Multiple sequence alignment - TraesCS7B01G466800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G466800 chr7B 100.000 3300 0 0 1 3300 724284382 724287681 0.000000e+00 6095.0
1 TraesCS7B01G466800 chr7B 94.887 2386 106 8 923 3300 724791085 724793462 0.000000e+00 3716.0
2 TraesCS7B01G466800 chr7B 82.513 1584 208 33 953 2518 724401349 724402881 0.000000e+00 1327.0
3 TraesCS7B01G466800 chr7B 83.855 991 130 12 962 1926 724982813 724981827 0.000000e+00 917.0
4 TraesCS7B01G466800 chr7B 80.991 989 149 16 971 1947 724168473 724169434 0.000000e+00 749.0
5 TraesCS7B01G466800 chr7B 86.402 478 62 2 1907 2384 724981798 724981324 1.360000e-143 520.0
6 TraesCS7B01G466800 chr7B 89.529 382 18 2 1 382 724790105 724790464 6.450000e-127 464.0
7 TraesCS7B01G466800 chr7B 90.455 220 16 3 646 864 724790864 724791079 5.390000e-73 285.0
8 TraesCS7B01G466800 chr7B 76.680 506 85 14 2256 2734 723972393 723972892 1.970000e-62 250.0
9 TraesCS7B01G466800 chr7B 93.077 130 9 0 529 658 724790559 724790688 1.210000e-44 191.0
10 TraesCS7B01G466800 chr7B 74.745 491 54 39 2537 3001 724466424 724466870 4.410000e-34 156.0
11 TraesCS7B01G466800 chr7B 89.744 78 4 1 433 506 724790540 724790463 2.710000e-16 97.1
12 TraesCS7B01G466800 chr7A 84.455 2020 212 42 1103 3070 721024766 721022797 0.000000e+00 1897.0
13 TraesCS7B01G466800 chr7A 81.288 994 146 23 971 1945 720953597 720954569 0.000000e+00 769.0
14 TraesCS7B01G466800 chr7A 85.120 457 41 14 2381 2820 720955059 720955505 3.020000e-120 442.0
15 TraesCS7B01G466800 chrUn 81.972 1653 216 40 915 2518 93228029 93229648 0.000000e+00 1327.0
16 TraesCS7B01G466800 chrUn 83.300 994 138 11 953 1923 87733985 87734973 0.000000e+00 891.0
17 TraesCS7B01G466800 chrUn 85.345 464 64 2 1912 2375 87735010 87735469 8.280000e-131 477.0
18 TraesCS7B01G466800 chr7D 84.643 840 110 7 1103 1926 625369964 625369128 0.000000e+00 819.0
19 TraesCS7B01G466800 chr7D 81.307 995 142 21 971 1947 625121537 625120569 0.000000e+00 767.0
20 TraesCS7B01G466800 chr7D 80.722 970 128 35 1889 2820 625369117 625368169 0.000000e+00 701.0
21 TraesCS7B01G466800 chr7D 84.480 741 72 26 2381 3082 625120081 625119345 0.000000e+00 691.0
22 TraesCS7B01G466800 chr7D 82.979 141 18 3 2867 3005 625109656 625109520 4.470000e-24 122.0
23 TraesCS7B01G466800 chr7D 91.111 45 3 1 2734 2777 581273807 581273851 3.560000e-05 60.2
24 TraesCS7B01G466800 chr4D 88.804 652 65 5 1 646 39298267 39298916 0.000000e+00 793.0
25 TraesCS7B01G466800 chr2B 88.661 635 44 18 1 634 14966516 14965909 0.000000e+00 749.0
26 TraesCS7B01G466800 chr2B 85.955 356 47 3 301 654 740546228 740545874 8.640000e-101 377.0
27 TraesCS7B01G466800 chr2B 100.000 33 0 0 204 236 432124455 432124423 9.890000e-06 62.1
28 TraesCS7B01G466800 chr2D 81.219 607 79 18 100 677 498322373 498321773 1.080000e-124 457.0
29 TraesCS7B01G466800 chr6A 78.462 455 63 18 2381 2820 493360712 493360278 7.020000e-67 265.0
30 TraesCS7B01G466800 chr2A 80.556 288 37 11 2385 2668 223888548 223888820 1.550000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G466800 chr7B 724284382 724287681 3299 False 6095.0 6095 100.0000 1 3300 1 chr7B.!!$F3 3299
1 TraesCS7B01G466800 chr7B 724401349 724402881 1532 False 1327.0 1327 82.5130 953 2518 1 chr7B.!!$F4 1565
2 TraesCS7B01G466800 chr7B 724790105 724793462 3357 False 1164.0 3716 91.9870 1 3300 4 chr7B.!!$F6 3299
3 TraesCS7B01G466800 chr7B 724168473 724169434 961 False 749.0 749 80.9910 971 1947 1 chr7B.!!$F2 976
4 TraesCS7B01G466800 chr7B 724981324 724982813 1489 True 718.5 917 85.1285 962 2384 2 chr7B.!!$R2 1422
5 TraesCS7B01G466800 chr7A 721022797 721024766 1969 True 1897.0 1897 84.4550 1103 3070 1 chr7A.!!$R1 1967
6 TraesCS7B01G466800 chr7A 720953597 720955505 1908 False 605.5 769 83.2040 971 2820 2 chr7A.!!$F1 1849
7 TraesCS7B01G466800 chrUn 93228029 93229648 1619 False 1327.0 1327 81.9720 915 2518 1 chrUn.!!$F1 1603
8 TraesCS7B01G466800 chrUn 87733985 87735469 1484 False 684.0 891 84.3225 953 2375 2 chrUn.!!$F2 1422
9 TraesCS7B01G466800 chr7D 625368169 625369964 1795 True 760.0 819 82.6825 1103 2820 2 chr7D.!!$R3 1717
10 TraesCS7B01G466800 chr7D 625119345 625121537 2192 True 729.0 767 82.8935 971 3082 2 chr7D.!!$R2 2111
11 TraesCS7B01G466800 chr4D 39298267 39298916 649 False 793.0 793 88.8040 1 646 1 chr4D.!!$F1 645
12 TraesCS7B01G466800 chr2B 14965909 14966516 607 True 749.0 749 88.6610 1 634 1 chr2B.!!$R1 633
13 TraesCS7B01G466800 chr2D 498321773 498322373 600 True 457.0 457 81.2190 100 677 1 chr2D.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 345 0.179000 CAGCTGTCCCTATGGTCCAC 59.821 60.0 5.25 0.0 0.00 4.02 F
601 654 0.322816 GTGCATGTGGACCCTCATGT 60.323 55.0 23.77 0.0 44.77 3.21 F
1676 1964 0.034756 ACATGAGCACAAGTACGGCA 59.965 50.0 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1810 0.930310 CGGGATTGCACACGACATAG 59.070 55.000 0.0 0.0 39.16 2.23 R
1767 2064 0.938713 CGAGGAGTGCCGACTAGTAG 59.061 60.000 0.0 0.0 39.96 2.57 R
2528 2934 6.373774 AGAAATGCATGAAGGTAGAAGTTGAG 59.626 38.462 0.0 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.410004 TAGGCGCTGGTAGTAGCAAT 58.590 50.000 7.64 0.00 43.87 3.56
93 94 1.539827 GTAGCAATCCAAAACGCCAGT 59.460 47.619 0.00 0.00 0.00 4.00
281 327 1.680989 TGATTCTCCTCCGTCCGCA 60.681 57.895 0.00 0.00 0.00 5.69
284 330 4.742649 TCTCCTCCGTCCGCAGCT 62.743 66.667 0.00 0.00 0.00 4.24
299 345 0.179000 CAGCTGTCCCTATGGTCCAC 59.821 60.000 5.25 0.00 0.00 4.02
365 411 1.542187 AAAGGGCCGACGAGCTAAGT 61.542 55.000 0.00 0.00 0.00 2.24
366 412 2.202756 GGGCCGACGAGCTAAGTG 60.203 66.667 0.00 0.00 0.00 3.16
494 545 2.441164 GAGAGAGAGGGGCGAGCA 60.441 66.667 0.00 0.00 0.00 4.26
526 578 7.308348 GGAGATGTGTGAGAATTTAAAAACGGA 60.308 37.037 0.00 0.00 0.00 4.69
527 579 8.110860 AGATGTGTGAGAATTTAAAAACGGAT 57.889 30.769 0.00 0.00 0.00 4.18
531 583 7.646130 TGTGTGAGAATTTAAAAACGGATTGTC 59.354 33.333 0.00 0.00 0.00 3.18
551 604 2.484651 TCGAGTAGAGGATAAGATGCGC 59.515 50.000 0.00 0.00 0.00 6.09
601 654 0.322816 GTGCATGTGGACCCTCATGT 60.323 55.000 23.77 0.00 44.77 3.21
671 912 1.429825 CCGCACACAAACGTTTCCA 59.570 52.632 11.37 0.00 0.00 3.53
682 923 6.532302 ACACAAACGTTTCCATTTTAGAAACC 59.468 34.615 11.37 0.00 46.71 3.27
684 925 3.892522 ACGTTTCCATTTTAGAAACCGC 58.107 40.909 9.98 0.00 46.71 5.68
691 932 4.398044 TCCATTTTAGAAACCGCTGGAATC 59.602 41.667 1.50 0.27 0.00 2.52
699 940 4.910956 CGCTGGAATCGGAAGACA 57.089 55.556 0.00 0.00 46.97 3.41
701 942 1.084370 CGCTGGAATCGGAAGACACC 61.084 60.000 0.00 0.00 46.97 4.16
702 943 0.744771 GCTGGAATCGGAAGACACCC 60.745 60.000 0.00 0.00 46.97 4.61
723 964 2.923605 TTTTTCAGCGAACCAAACGT 57.076 40.000 0.00 0.00 0.00 3.99
733 974 2.669434 CGAACCAAACGTGTCGGAATAT 59.331 45.455 5.25 0.00 0.00 1.28
734 975 3.858812 CGAACCAAACGTGTCGGAATATA 59.141 43.478 5.25 0.00 0.00 0.86
735 976 4.505191 CGAACCAAACGTGTCGGAATATAT 59.495 41.667 5.25 0.00 0.00 0.86
810 1051 4.096382 GCATTTTCTTTTGAGATAGGCCGA 59.904 41.667 0.00 0.00 0.00 5.54
811 1052 5.573146 CATTTTCTTTTGAGATAGGCCGAC 58.427 41.667 0.00 0.00 0.00 4.79
843 1084 6.769822 AGATGTGATAGTTAGCCCATTTTCTG 59.230 38.462 0.00 0.00 0.00 3.02
849 1090 2.885113 GCCCATTTTCTGGCGGAC 59.115 61.111 0.00 0.00 44.46 4.79
864 1105 4.090588 GACCCACGGGCCATTCGA 62.091 66.667 4.39 0.00 39.32 3.71
866 1107 2.591715 CCCACGGGCCATTCGATC 60.592 66.667 4.39 0.00 0.00 3.69
867 1108 2.967076 CCACGGGCCATTCGATCG 60.967 66.667 9.36 9.36 0.00 3.69
868 1109 3.640000 CACGGGCCATTCGATCGC 61.640 66.667 11.09 0.00 0.00 4.58
869 1110 3.849951 ACGGGCCATTCGATCGCT 61.850 61.111 11.09 0.00 0.00 4.93
870 1111 2.338620 CGGGCCATTCGATCGCTA 59.661 61.111 11.09 0.64 0.00 4.26
871 1112 1.300620 CGGGCCATTCGATCGCTAA 60.301 57.895 11.09 0.10 0.00 3.09
872 1113 1.284982 CGGGCCATTCGATCGCTAAG 61.285 60.000 11.09 0.23 0.00 2.18
873 1114 0.951040 GGGCCATTCGATCGCTAAGG 60.951 60.000 11.09 10.51 0.00 2.69
874 1115 1.569479 GGCCATTCGATCGCTAAGGC 61.569 60.000 23.41 23.41 39.86 4.35
875 1116 0.880278 GCCATTCGATCGCTAAGGCA 60.880 55.000 25.25 1.69 40.29 4.75
876 1117 1.143305 CCATTCGATCGCTAAGGCAG 58.857 55.000 11.09 0.00 38.60 4.85
877 1118 1.143305 CATTCGATCGCTAAGGCAGG 58.857 55.000 11.09 0.00 38.60 4.85
878 1119 1.040646 ATTCGATCGCTAAGGCAGGA 58.959 50.000 11.09 0.00 38.60 3.86
879 1120 0.385751 TTCGATCGCTAAGGCAGGAG 59.614 55.000 11.09 0.00 38.60 3.69
880 1121 1.006805 CGATCGCTAAGGCAGGAGG 60.007 63.158 0.26 0.00 38.60 4.30
881 1122 1.301322 GATCGCTAAGGCAGGAGGC 60.301 63.158 0.00 0.00 43.74 4.70
882 1123 3.157217 ATCGCTAAGGCAGGAGGCG 62.157 63.158 0.00 0.00 46.16 5.52
883 1124 4.899239 CGCTAAGGCAGGAGGCGG 62.899 72.222 0.00 0.00 46.16 6.13
884 1125 3.470888 GCTAAGGCAGGAGGCGGA 61.471 66.667 0.00 0.00 46.16 5.54
885 1126 3.031417 GCTAAGGCAGGAGGCGGAA 62.031 63.158 0.00 0.00 46.16 4.30
886 1127 1.144936 CTAAGGCAGGAGGCGGAAG 59.855 63.158 0.00 0.00 46.16 3.46
920 1161 2.991540 AAAAAGGCAGGAGGCGGC 60.992 61.111 0.00 0.00 46.16 6.53
1116 1385 1.493861 CTTGGCTGATCTCTCCTCCA 58.506 55.000 0.00 0.00 0.00 3.86
1275 1551 4.838152 CGGCCTCATCCACCACCG 62.838 72.222 0.00 0.00 0.00 4.94
1276 1552 4.489771 GGCCTCATCCACCACCGG 62.490 72.222 0.00 0.00 0.00 5.28
1320 1596 2.352805 CCTGGCCGGCTTCTTCTT 59.647 61.111 28.56 0.00 0.00 2.52
1522 1810 3.351416 GGGGTTGTCGCGTTCCAC 61.351 66.667 5.77 1.86 0.00 4.02
1573 1861 1.227853 GGTCGTGTTGCCCAACTCT 60.228 57.895 11.91 0.00 41.67 3.24
1575 1863 0.814010 GTCGTGTTGCCCAACTCTGT 60.814 55.000 11.91 0.00 41.67 3.41
1630 1918 1.971695 CTTTGACCCCGCCTTGTCC 60.972 63.158 0.00 0.00 0.00 4.02
1676 1964 0.034756 ACATGAGCACAAGTACGGCA 59.965 50.000 0.00 0.00 0.00 5.69
1677 1965 0.723414 CATGAGCACAAGTACGGCAG 59.277 55.000 0.00 0.00 0.00 4.85
1681 1975 0.107831 AGCACAAGTACGGCAGGAAA 59.892 50.000 5.04 0.00 0.00 3.13
1682 1976 0.517316 GCACAAGTACGGCAGGAAAG 59.483 55.000 0.00 0.00 0.00 2.62
1723 2017 0.602562 TGTATTCGTCCGAAACCGGT 59.397 50.000 0.00 0.00 46.77 5.28
1762 2059 1.025812 AGAGATGGAACGGAGCTACG 58.974 55.000 19.02 19.02 40.31 3.51
1769 2066 2.044650 ACGGAGCTACGTGGCCTA 60.045 61.111 26.27 0.00 46.64 3.93
1788 2097 2.439701 TAGTCGGCACTCCTCGGG 60.440 66.667 0.00 0.00 33.62 5.14
1867 2176 2.809601 GTAGCTGCGGTGGACACG 60.810 66.667 0.00 0.00 0.00 4.49
1934 2309 5.114764 TGATGATTTTGGTCTGGCTGATA 57.885 39.130 0.00 0.00 0.00 2.15
1971 2346 2.438434 GGGCCGCTTGCACTATGT 60.438 61.111 0.00 0.00 41.53 2.29
1972 2347 1.153249 GGGCCGCTTGCACTATGTA 60.153 57.895 0.00 0.00 41.53 2.29
1973 2348 1.160329 GGGCCGCTTGCACTATGTAG 61.160 60.000 0.00 0.00 41.53 2.74
1993 2369 6.947464 TGTAGGTTTTCAGAGGGATAAAGAG 58.053 40.000 0.00 0.00 0.00 2.85
2266 2645 2.951642 GCTATTTCTGCCTTATGTGCCA 59.048 45.455 0.00 0.00 0.00 4.92
2356 2735 1.265635 GTGGATCTCTGATCGGAGTCG 59.734 57.143 27.07 7.15 35.11 4.18
2528 2934 5.414454 TCATATGTACTGGTTTCTGGTTTGC 59.586 40.000 1.90 0.00 0.00 3.68
2948 3402 8.345565 TCTTTTTAGATCACAAAAGTGCTCTTC 58.654 33.333 20.48 0.00 39.84 2.87
3263 3724 2.285488 GCGATTTTCAAGGGAGATCGAC 59.715 50.000 8.07 0.00 40.42 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.878769 ACATTTTTGCTACAATCGTTTCTTTTT 58.121 25.926 0.00 0.00 0.00 1.94
80 81 1.345089 TGCTACTACTGGCGTTTTGGA 59.655 47.619 0.00 0.00 0.00 3.53
93 94 4.528920 ACTGGTGTTTTGGTTTGCTACTA 58.471 39.130 0.00 0.00 0.00 1.82
190 213 1.078497 CTACAATGGGCAGGCGACA 60.078 57.895 0.00 0.00 0.00 4.35
281 327 0.983378 GGTGGACCATAGGGACAGCT 60.983 60.000 0.00 0.00 38.81 4.24
284 330 0.326238 GGAGGTGGACCATAGGGACA 60.326 60.000 0.00 0.00 38.89 4.02
299 345 2.109229 ATCCCCACAGATACTGGAGG 57.891 55.000 0.00 0.00 35.51 4.30
365 411 8.601845 TTTGACGAGATTTCTCTTTTATGTCA 57.398 30.769 6.06 7.56 40.75 3.58
366 412 8.926710 TCTTTGACGAGATTTCTCTTTTATGTC 58.073 33.333 6.06 5.39 40.75 3.06
388 435 4.202609 TGCTCCTCTTTTTCATCCCTCTTT 60.203 41.667 0.00 0.00 0.00 2.52
494 545 5.954153 AATTCTCACACATCTCCATCTCT 57.046 39.130 0.00 0.00 0.00 3.10
526 578 5.335269 CGCATCTTATCCTCTACTCGACAAT 60.335 44.000 0.00 0.00 0.00 2.71
527 579 4.023963 CGCATCTTATCCTCTACTCGACAA 60.024 45.833 0.00 0.00 0.00 3.18
531 583 2.726373 CGCGCATCTTATCCTCTACTCG 60.726 54.545 8.75 0.00 0.00 4.18
551 604 1.683917 CTTATCCTCTCCTCCACCACG 59.316 57.143 0.00 0.00 0.00 4.94
671 912 3.377172 CCGATTCCAGCGGTTTCTAAAAT 59.623 43.478 0.00 0.00 43.66 1.82
682 923 1.084370 GGTGTCTTCCGATTCCAGCG 61.084 60.000 0.00 0.00 0.00 5.18
684 925 0.905357 AGGGTGTCTTCCGATTCCAG 59.095 55.000 0.00 0.00 0.00 3.86
766 1007 2.029470 CCGCCCACAACATTTACAACAT 60.029 45.455 0.00 0.00 0.00 2.71
767 1008 1.338337 CCGCCCACAACATTTACAACA 59.662 47.619 0.00 0.00 0.00 3.33
810 1051 3.895232 AACTATCACATCTTCAGGCGT 57.105 42.857 0.00 0.00 0.00 5.68
811 1052 3.738282 GCTAACTATCACATCTTCAGGCG 59.262 47.826 0.00 0.00 0.00 5.52
849 1090 2.591715 GATCGAATGGCCCGTGGG 60.592 66.667 0.00 0.00 38.57 4.61
864 1105 2.825264 GCCTCCTGCCTTAGCGAT 59.175 61.111 0.00 0.00 44.31 4.58
866 1107 4.899239 CCGCCTCCTGCCTTAGCG 62.899 72.222 0.00 0.00 46.04 4.26
867 1108 2.932130 CTTCCGCCTCCTGCCTTAGC 62.932 65.000 0.00 0.00 36.24 3.09
868 1109 1.144936 CTTCCGCCTCCTGCCTTAG 59.855 63.158 0.00 0.00 36.24 2.18
869 1110 3.031417 GCTTCCGCCTCCTGCCTTA 62.031 63.158 0.00 0.00 36.24 2.69
870 1111 4.416738 GCTTCCGCCTCCTGCCTT 62.417 66.667 0.00 0.00 36.24 4.35
882 1123 1.795170 TTTTGAGTGCTGCCGCTTCC 61.795 55.000 0.70 0.00 36.97 3.46
883 1124 0.030638 TTTTTGAGTGCTGCCGCTTC 59.969 50.000 0.70 0.14 36.97 3.86
884 1125 2.114638 TTTTTGAGTGCTGCCGCTT 58.885 47.368 0.70 0.00 36.97 4.68
885 1126 3.840437 TTTTTGAGTGCTGCCGCT 58.160 50.000 0.70 0.00 36.97 5.52
903 1144 2.991540 GCCGCCTCCTGCCTTTTT 60.992 61.111 0.00 0.00 36.24 1.94
904 1145 4.284550 TGCCGCCTCCTGCCTTTT 62.285 61.111 0.00 0.00 36.24 2.27
905 1146 4.729918 CTGCCGCCTCCTGCCTTT 62.730 66.667 0.00 0.00 36.24 3.11
931 1172 0.605589 GAAAACTAGGGCTGCGTGGT 60.606 55.000 0.00 0.00 0.00 4.16
1043 1298 2.508439 GGGCACGAATCGAAGCGA 60.508 61.111 10.55 0.00 41.13 4.93
1275 1551 3.680786 GCCTTTTGCGGTGGTCCC 61.681 66.667 0.00 0.00 0.00 4.46
1448 1736 3.875727 CCATTGCAGGAGTCAAGTAGATG 59.124 47.826 0.00 0.00 0.00 2.90
1522 1810 0.930310 CGGGATTGCACACGACATAG 59.070 55.000 0.00 0.00 39.16 2.23
1593 1881 1.667151 CCCAAACATGTGGTGGCTG 59.333 57.895 19.19 6.90 36.90 4.85
1594 1882 2.209315 GCCCAAACATGTGGTGGCT 61.209 57.895 19.19 0.00 36.90 4.75
1630 1918 4.959723 ACTCAAACACATGGAAATTTGGG 58.040 39.130 0.00 4.76 38.29 4.12
1633 1921 5.988287 ACCAACTCAAACACATGGAAATTT 58.012 33.333 0.00 0.00 35.16 1.82
1634 1922 5.612725 ACCAACTCAAACACATGGAAATT 57.387 34.783 0.00 0.00 35.16 1.82
1681 1975 1.517832 CACTCCGGAAAGATCGGCT 59.482 57.895 5.23 0.00 46.43 5.52
1682 1976 1.521681 CCACTCCGGAAAGATCGGC 60.522 63.158 5.23 0.00 46.43 5.54
1701 1995 3.135414 CGGTTTCGGACGAATACACTA 57.865 47.619 8.06 0.00 33.79 2.74
1723 2017 5.060427 TCTTCTCCTTGAAAACCCATTCA 57.940 39.130 0.00 0.00 37.53 2.57
1734 2028 2.497675 CCGTTCCATCTCTTCTCCTTGA 59.502 50.000 0.00 0.00 0.00 3.02
1767 2064 0.938713 CGAGGAGTGCCGACTAGTAG 59.061 60.000 0.00 0.00 39.96 2.57
1769 2066 1.749638 CCGAGGAGTGCCGACTAGT 60.750 63.158 0.00 0.00 39.96 2.57
1788 2097 7.604545 ACAGAAGGCTATTAAGAAAGACACTTC 59.395 37.037 0.00 0.00 0.00 3.01
1867 2176 2.762535 TCATCCACGTTTCTCCCTTC 57.237 50.000 0.00 0.00 0.00 3.46
1904 2213 4.763793 CAGACCAAAATCATCAACCTGACT 59.236 41.667 0.00 0.00 0.00 3.41
1934 2309 1.732259 CTGCGACCGCTGAATAAAACT 59.268 47.619 15.61 0.00 41.63 2.66
1971 2346 5.428783 CCCTCTTTATCCCTCTGAAAACCTA 59.571 44.000 0.00 0.00 0.00 3.08
1972 2347 4.228438 CCCTCTTTATCCCTCTGAAAACCT 59.772 45.833 0.00 0.00 0.00 3.50
1973 2348 4.018324 ACCCTCTTTATCCCTCTGAAAACC 60.018 45.833 0.00 0.00 0.00 3.27
2266 2645 5.237996 CAGTGATTGTGACTCTGTGAACAAT 59.762 40.000 12.05 12.05 43.91 2.71
2425 2828 3.521531 TCCATACTGAACCACCATTGCTA 59.478 43.478 0.00 0.00 0.00 3.49
2528 2934 6.373774 AGAAATGCATGAAGGTAGAAGTTGAG 59.626 38.462 0.00 0.00 0.00 3.02
2948 3402 7.722363 ACCTAACTGAAAAATACCCACAAAAG 58.278 34.615 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.