Multiple sequence alignment - TraesCS7B01G465800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G465800 chr7B 100.000 3093 0 0 1 3093 723007929 723011021 0.000000e+00 5712.0
1 TraesCS7B01G465800 chr7B 96.854 1812 51 2 1 1812 710512110 710513915 0.000000e+00 3025.0
2 TraesCS7B01G465800 chr7B 96.689 1812 50 4 1 1812 684910824 684912625 0.000000e+00 3005.0
3 TraesCS7B01G465800 chr7B 92.333 1226 78 8 961 2181 455519185 455520399 0.000000e+00 1729.0
4 TraesCS7B01G465800 chr7B 94.940 830 37 4 1806 2632 94172260 94171433 0.000000e+00 1295.0
5 TraesCS7B01G465800 chr7B 96.970 462 14 0 2632 3093 107418682 107419143 0.000000e+00 776.0
6 TraesCS7B01G465800 chr5B 97.461 1812 46 0 1 1812 563671436 563673247 0.000000e+00 3092.0
7 TraesCS7B01G465800 chr4A 97.130 1812 52 0 1 1812 742666029 742667840 0.000000e+00 3059.0
8 TraesCS7B01G465800 chr4A 95.531 828 34 3 1806 2632 652593047 652593872 0.000000e+00 1321.0
9 TraesCS7B01G465800 chr4A 95.290 828 36 3 1806 2632 663517760 663518585 0.000000e+00 1310.0
10 TraesCS7B01G465800 chr4A 96.544 463 15 1 2631 3093 668046513 668046052 0.000000e+00 765.0
11 TraesCS7B01G465800 chr2B 97.020 1812 50 3 1 1812 294332513 294334320 0.000000e+00 3044.0
12 TraesCS7B01G465800 chr2B 96.799 1812 54 3 1 1812 294286367 294288174 0.000000e+00 3022.0
13 TraesCS7B01G465800 chr2B 96.529 1815 60 1 1 1812 110474627 110476441 0.000000e+00 3000.0
14 TraesCS7B01G465800 chr2B 96.498 828 28 1 1806 2632 419834077 419834904 0.000000e+00 1367.0
15 TraesCS7B01G465800 chr1B 96.731 1805 58 1 8 1812 638837417 638839220 0.000000e+00 3005.0
16 TraesCS7B01G465800 chr1B 94.928 828 38 4 1806 2632 680828938 680828114 0.000000e+00 1293.0
17 TraesCS7B01G465800 chr1B 94.813 829 39 4 1806 2633 380347978 380348803 0.000000e+00 1290.0
18 TraesCS7B01G465800 chr1B 97.403 462 10 2 2632 3093 630982814 630982355 0.000000e+00 785.0
19 TraesCS7B01G465800 chr1B 96.970 462 13 1 2632 3093 111924512 111924052 0.000000e+00 774.0
20 TraesCS7B01G465800 chrUn 96.578 1812 52 4 1 1812 87493821 87492020 0.000000e+00 2994.0
21 TraesCS7B01G465800 chrUn 95.238 42 1 1 1771 1812 418600499 418600459 7.160000e-07 65.8
22 TraesCS7B01G465800 chr4B 96.256 828 29 2 1806 2632 387101310 387100484 0.000000e+00 1356.0
23 TraesCS7B01G465800 chr3B 95.894 828 33 1 1806 2632 738453018 738453845 0.000000e+00 1339.0
24 TraesCS7B01G465800 chr3B 94.934 829 40 2 1806 2632 292989377 292990205 0.000000e+00 1297.0
25 TraesCS7B01G465800 chr3B 97.414 464 10 2 2631 3093 304304905 304305367 0.000000e+00 789.0
26 TraesCS7B01G465800 chr3B 97.192 463 11 2 2632 3093 743036912 743036451 0.000000e+00 782.0
27 TraesCS7B01G465800 chr3B 96.970 462 13 1 2632 3093 25639992 25640452 0.000000e+00 774.0
28 TraesCS7B01G465800 chr3B 96.970 462 13 1 2632 3093 685716211 685715751 0.000000e+00 774.0
29 TraesCS7B01G465800 chr6B 96.753 462 13 2 2632 3093 125463784 125463325 0.000000e+00 769.0
30 TraesCS7B01G465800 chr7D 93.333 45 2 1 1768 1812 2985885 2985928 7.160000e-07 65.8
31 TraesCS7B01G465800 chr7D 93.333 45 2 1 1768 1812 3027596 3027639 7.160000e-07 65.8
32 TraesCS7B01G465800 chr7D 93.333 45 2 1 1768 1812 3054260 3054303 7.160000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G465800 chr7B 723007929 723011021 3092 False 5712 5712 100.000 1 3093 1 chr7B.!!$F5 3092
1 TraesCS7B01G465800 chr7B 710512110 710513915 1805 False 3025 3025 96.854 1 1812 1 chr7B.!!$F4 1811
2 TraesCS7B01G465800 chr7B 684910824 684912625 1801 False 3005 3005 96.689 1 1812 1 chr7B.!!$F3 1811
3 TraesCS7B01G465800 chr7B 455519185 455520399 1214 False 1729 1729 92.333 961 2181 1 chr7B.!!$F2 1220
4 TraesCS7B01G465800 chr7B 94171433 94172260 827 True 1295 1295 94.940 1806 2632 1 chr7B.!!$R1 826
5 TraesCS7B01G465800 chr5B 563671436 563673247 1811 False 3092 3092 97.461 1 1812 1 chr5B.!!$F1 1811
6 TraesCS7B01G465800 chr4A 742666029 742667840 1811 False 3059 3059 97.130 1 1812 1 chr4A.!!$F3 1811
7 TraesCS7B01G465800 chr4A 652593047 652593872 825 False 1321 1321 95.531 1806 2632 1 chr4A.!!$F1 826
8 TraesCS7B01G465800 chr4A 663517760 663518585 825 False 1310 1310 95.290 1806 2632 1 chr4A.!!$F2 826
9 TraesCS7B01G465800 chr2B 294332513 294334320 1807 False 3044 3044 97.020 1 1812 1 chr2B.!!$F3 1811
10 TraesCS7B01G465800 chr2B 294286367 294288174 1807 False 3022 3022 96.799 1 1812 1 chr2B.!!$F2 1811
11 TraesCS7B01G465800 chr2B 110474627 110476441 1814 False 3000 3000 96.529 1 1812 1 chr2B.!!$F1 1811
12 TraesCS7B01G465800 chr2B 419834077 419834904 827 False 1367 1367 96.498 1806 2632 1 chr2B.!!$F4 826
13 TraesCS7B01G465800 chr1B 638837417 638839220 1803 False 3005 3005 96.731 8 1812 1 chr1B.!!$F2 1804
14 TraesCS7B01G465800 chr1B 680828114 680828938 824 True 1293 1293 94.928 1806 2632 1 chr1B.!!$R3 826
15 TraesCS7B01G465800 chr1B 380347978 380348803 825 False 1290 1290 94.813 1806 2633 1 chr1B.!!$F1 827
16 TraesCS7B01G465800 chrUn 87492020 87493821 1801 True 2994 2994 96.578 1 1812 1 chrUn.!!$R1 1811
17 TraesCS7B01G465800 chr4B 387100484 387101310 826 True 1356 1356 96.256 1806 2632 1 chr4B.!!$R1 826
18 TraesCS7B01G465800 chr3B 738453018 738453845 827 False 1339 1339 95.894 1806 2632 1 chr3B.!!$F4 826
19 TraesCS7B01G465800 chr3B 292989377 292990205 828 False 1297 1297 94.934 1806 2632 1 chr3B.!!$F2 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 574 2.285668 CCTTCTCCCTCCTGCCCA 60.286 66.667 0.0 0.0 0.0 5.36 F
1570 1582 0.105194 TGAGGAGGAGGTGTCCAACA 60.105 55.000 0.0 0.0 46.8 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 1892 0.739112 GTCCAGCTGAGCCTTCTTCG 60.739 60.0 17.39 0.0 0.0 3.79 R
2800 2820 0.107263 TCTGCCTTGATGCGCCAATA 60.107 50.0 4.18 0.0 0.0 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.420022 CTGTAAAATAAGGCGCTGCTGT 59.580 45.455 7.64 0.00 0.00 4.40
160 161 3.446184 CTAGTTATAGCAGCAATGCGC 57.554 47.619 12.63 12.63 40.27 6.09
250 251 9.036671 GCTAAATTTACTACAAAAGTTTTGCCA 57.963 29.630 24.86 13.88 39.80 4.92
304 305 2.495270 CACACACTAGCTCACTGGATCT 59.505 50.000 0.00 0.00 0.00 2.75
305 306 2.495270 ACACACTAGCTCACTGGATCTG 59.505 50.000 0.00 0.00 0.00 2.90
569 574 2.285668 CCTTCTCCCTCCTGCCCA 60.286 66.667 0.00 0.00 0.00 5.36
992 1001 8.355169 TCATTAATCCTTTGCTCATATTGCTTC 58.645 33.333 0.00 0.00 0.00 3.86
1191 1203 5.572511 TGCATTGTGTCATTTCGCTTATTTC 59.427 36.000 0.00 0.00 0.00 2.17
1298 1310 3.432378 ACACTATGGAGGTCGAGAAAGT 58.568 45.455 0.00 0.00 0.00 2.66
1391 1403 2.909006 AGTTGATCAGCTTCTCCTTCCA 59.091 45.455 6.20 0.00 0.00 3.53
1537 1549 2.299993 TGAAGCCATCGTAGCTCAAG 57.700 50.000 0.00 0.00 40.49 3.02
1541 1553 1.765314 AGCCATCGTAGCTCAAGGAAT 59.235 47.619 0.00 0.00 34.91 3.01
1570 1582 0.105194 TGAGGAGGAGGTGTCCAACA 60.105 55.000 0.00 0.00 46.80 3.33
1603 1615 1.666553 CCGCCACGTGCTGACTTTA 60.667 57.895 10.91 0.00 38.05 1.85
1876 1892 3.318275 TGAGTTATGGTATCGAGCCTGAC 59.682 47.826 9.75 6.18 0.00 3.51
1988 2004 1.213430 ACTCGGTTGGGTGGAAGAAAA 59.787 47.619 0.00 0.00 0.00 2.29
1994 2010 3.496331 GTTGGGTGGAAGAAAATCCTCA 58.504 45.455 0.00 0.00 40.35 3.86
2149 2167 7.716612 AGAACTACATATGATGATTGTCGTCA 58.283 34.615 10.38 4.51 45.40 4.35
2187 2205 4.005650 ACATATGATGATGGCCGTTGATC 58.994 43.478 10.38 4.93 0.00 2.92
2198 2216 2.420129 GGCCGTTGATCTGACCTTGTAT 60.420 50.000 0.00 0.00 0.00 2.29
2207 2225 4.890158 TCTGACCTTGTATTGCTTGAGA 57.110 40.909 0.00 0.00 0.00 3.27
2473 2493 4.455190 GCTACAGCTAGGTAATAGTAGCGT 59.545 45.833 19.92 4.30 45.35 5.07
2479 2499 6.204301 CAGCTAGGTAATAGTAGCGTGTTCTA 59.796 42.308 0.00 0.00 45.35 2.10
2516 2536 5.237996 TGATATCGTAAACAGTAGTAGCGCT 59.762 40.000 17.26 17.26 0.00 5.92
2609 2629 1.669760 CCTCAAAACCCGCGCTACA 60.670 57.895 5.56 0.00 0.00 2.74
2613 2633 0.309612 CAAAACCCGCGCTACAACTT 59.690 50.000 5.56 0.00 0.00 2.66
2636 2656 4.904895 GGTTTTCCCTAGTAGTGGTCTT 57.095 45.455 0.00 0.00 0.00 3.01
2637 2657 5.238624 GGTTTTCCCTAGTAGTGGTCTTT 57.761 43.478 0.00 0.00 0.00 2.52
2638 2658 5.628130 GGTTTTCCCTAGTAGTGGTCTTTT 58.372 41.667 0.00 0.00 0.00 2.27
2639 2659 5.472478 GGTTTTCCCTAGTAGTGGTCTTTTG 59.528 44.000 0.00 0.00 0.00 2.44
2640 2660 6.293698 GTTTTCCCTAGTAGTGGTCTTTTGA 58.706 40.000 0.00 0.00 0.00 2.69
2641 2661 6.503560 TTTCCCTAGTAGTGGTCTTTTGAA 57.496 37.500 0.00 0.00 0.00 2.69
2642 2662 6.697641 TTCCCTAGTAGTGGTCTTTTGAAT 57.302 37.500 0.00 0.00 0.00 2.57
2643 2663 6.697641 TCCCTAGTAGTGGTCTTTTGAATT 57.302 37.500 0.00 0.00 0.00 2.17
2644 2664 6.708285 TCCCTAGTAGTGGTCTTTTGAATTC 58.292 40.000 0.00 0.00 0.00 2.17
2645 2665 5.581085 CCCTAGTAGTGGTCTTTTGAATTCG 59.419 44.000 0.04 0.00 0.00 3.34
2646 2666 5.581085 CCTAGTAGTGGTCTTTTGAATTCGG 59.419 44.000 0.04 0.00 0.00 4.30
2647 2667 5.223449 AGTAGTGGTCTTTTGAATTCGGA 57.777 39.130 0.04 0.00 0.00 4.55
2648 2668 5.238583 AGTAGTGGTCTTTTGAATTCGGAG 58.761 41.667 0.04 0.00 0.00 4.63
2649 2669 4.351874 AGTGGTCTTTTGAATTCGGAGA 57.648 40.909 0.04 1.35 0.00 3.71
2650 2670 4.065789 AGTGGTCTTTTGAATTCGGAGAC 58.934 43.478 19.42 19.42 34.32 3.36
2651 2671 4.065789 GTGGTCTTTTGAATTCGGAGACT 58.934 43.478 23.40 0.00 37.48 3.24
2652 2672 5.011738 AGTGGTCTTTTGAATTCGGAGACTA 59.988 40.000 23.40 18.87 37.48 2.59
2653 2673 5.699458 GTGGTCTTTTGAATTCGGAGACTAA 59.301 40.000 23.40 15.19 37.48 2.24
2654 2674 6.371825 GTGGTCTTTTGAATTCGGAGACTAAT 59.628 38.462 23.40 0.00 37.48 1.73
2655 2675 7.548075 GTGGTCTTTTGAATTCGGAGACTAATA 59.452 37.037 23.40 12.44 37.48 0.98
2656 2676 8.265055 TGGTCTTTTGAATTCGGAGACTAATAT 58.735 33.333 23.40 0.00 37.48 1.28
2657 2677 8.552034 GGTCTTTTGAATTCGGAGACTAATATG 58.448 37.037 23.40 0.98 37.48 1.78
2658 2678 9.314321 GTCTTTTGAATTCGGAGACTAATATGA 57.686 33.333 19.94 0.13 34.32 2.15
2661 2681 9.830975 TTTTGAATTCGGAGACTAATATGATGA 57.169 29.630 0.04 0.00 34.32 2.92
2662 2682 9.830975 TTTGAATTCGGAGACTAATATGATGAA 57.169 29.630 0.04 0.00 34.32 2.57
2666 2686 9.784531 AATTCGGAGACTAATATGATGAATTGT 57.215 29.630 0.00 0.00 34.32 2.71
2670 2690 9.307121 CGGAGACTAATATGATGAATTGTATCC 57.693 37.037 0.00 0.00 0.00 2.59
2671 2691 9.307121 GGAGACTAATATGATGAATTGTATCCG 57.693 37.037 0.00 0.00 0.00 4.18
2672 2692 9.307121 GAGACTAATATGATGAATTGTATCCGG 57.693 37.037 0.00 0.00 0.00 5.14
2673 2693 9.035890 AGACTAATATGATGAATTGTATCCGGA 57.964 33.333 6.61 6.61 0.00 5.14
2674 2694 9.088512 GACTAATATGATGAATTGTATCCGGAC 57.911 37.037 6.12 0.00 0.00 4.79
2675 2695 8.593679 ACTAATATGATGAATTGTATCCGGACA 58.406 33.333 6.12 0.00 0.00 4.02
2676 2696 7.672983 AATATGATGAATTGTATCCGGACAC 57.327 36.000 6.12 5.91 0.00 3.67
2677 2697 4.753516 TGATGAATTGTATCCGGACACT 57.246 40.909 15.13 0.00 0.00 3.55
2678 2698 5.862678 TGATGAATTGTATCCGGACACTA 57.137 39.130 15.13 7.00 0.00 2.74
2679 2699 6.228616 TGATGAATTGTATCCGGACACTAA 57.771 37.500 15.13 7.28 0.00 2.24
2680 2700 6.826668 TGATGAATTGTATCCGGACACTAAT 58.173 36.000 15.13 9.29 0.00 1.73
2681 2701 6.929049 TGATGAATTGTATCCGGACACTAATC 59.071 38.462 15.13 9.88 0.00 1.75
2682 2702 6.479972 TGAATTGTATCCGGACACTAATCT 57.520 37.500 15.13 4.09 0.00 2.40
2683 2703 6.884832 TGAATTGTATCCGGACACTAATCTT 58.115 36.000 15.13 0.00 0.00 2.40
2684 2704 6.984474 TGAATTGTATCCGGACACTAATCTTC 59.016 38.462 15.13 8.14 0.00 2.87
2685 2705 6.732896 ATTGTATCCGGACACTAATCTTCT 57.267 37.500 15.13 0.00 0.00 2.85
2686 2706 7.834881 ATTGTATCCGGACACTAATCTTCTA 57.165 36.000 15.13 0.00 0.00 2.10
2687 2707 7.834881 TTGTATCCGGACACTAATCTTCTAT 57.165 36.000 15.13 0.00 0.00 1.98
2688 2708 7.834881 TGTATCCGGACACTAATCTTCTATT 57.165 36.000 15.13 0.00 0.00 1.73
2689 2709 7.658261 TGTATCCGGACACTAATCTTCTATTG 58.342 38.462 15.13 0.00 0.00 1.90
2690 2710 6.732896 ATCCGGACACTAATCTTCTATTGT 57.267 37.500 6.12 0.00 0.00 2.71
2691 2711 7.834881 ATCCGGACACTAATCTTCTATTGTA 57.165 36.000 6.12 0.00 0.00 2.41
2692 2712 7.834881 TCCGGACACTAATCTTCTATTGTAT 57.165 36.000 0.00 0.00 0.00 2.29
2693 2713 8.246430 TCCGGACACTAATCTTCTATTGTATT 57.754 34.615 0.00 0.00 0.00 1.89
2694 2714 8.358148 TCCGGACACTAATCTTCTATTGTATTC 58.642 37.037 0.00 0.00 0.00 1.75
2695 2715 7.326305 CCGGACACTAATCTTCTATTGTATTCG 59.674 40.741 0.00 0.00 0.00 3.34
2696 2716 8.074370 CGGACACTAATCTTCTATTGTATTCGA 58.926 37.037 0.00 0.00 0.00 3.71
2697 2717 9.915629 GGACACTAATCTTCTATTGTATTCGAT 57.084 33.333 0.00 0.00 0.00 3.59
2705 2725 8.526218 TCTTCTATTGTATTCGATGAATCTGC 57.474 34.615 0.00 0.00 33.95 4.26
2706 2726 8.363390 TCTTCTATTGTATTCGATGAATCTGCT 58.637 33.333 0.00 0.00 33.95 4.24
2707 2727 7.880059 TCTATTGTATTCGATGAATCTGCTG 57.120 36.000 0.00 0.00 33.95 4.41
2708 2728 7.436933 TCTATTGTATTCGATGAATCTGCTGT 58.563 34.615 0.00 0.00 33.95 4.40
2709 2729 6.932356 ATTGTATTCGATGAATCTGCTGTT 57.068 33.333 0.00 0.00 33.95 3.16
2710 2730 5.723492 TGTATTCGATGAATCTGCTGTTG 57.277 39.130 0.00 0.00 33.95 3.33
2711 2731 3.687572 ATTCGATGAATCTGCTGTTGC 57.312 42.857 0.00 0.00 40.20 4.17
2712 2732 2.391616 TCGATGAATCTGCTGTTGCT 57.608 45.000 0.00 0.00 40.48 3.91
2713 2733 2.004733 TCGATGAATCTGCTGTTGCTG 58.995 47.619 0.00 0.00 40.48 4.41
2714 2734 1.736126 CGATGAATCTGCTGTTGCTGT 59.264 47.619 0.00 0.00 40.48 4.40
2715 2735 2.475685 CGATGAATCTGCTGTTGCTGTG 60.476 50.000 0.00 0.00 40.48 3.66
2716 2736 1.971481 TGAATCTGCTGTTGCTGTGT 58.029 45.000 0.00 0.00 40.48 3.72
2717 2737 3.124578 TGAATCTGCTGTTGCTGTGTA 57.875 42.857 0.00 0.00 40.48 2.90
2718 2738 2.807967 TGAATCTGCTGTTGCTGTGTAC 59.192 45.455 0.00 0.00 40.48 2.90
2719 2739 2.847327 ATCTGCTGTTGCTGTGTACT 57.153 45.000 0.00 0.00 40.48 2.73
2720 2740 1.869774 TCTGCTGTTGCTGTGTACTG 58.130 50.000 0.00 0.00 40.48 2.74
2721 2741 0.236711 CTGCTGTTGCTGTGTACTGC 59.763 55.000 6.90 6.90 40.48 4.40
2722 2742 0.179048 TGCTGTTGCTGTGTACTGCT 60.179 50.000 13.71 0.00 40.79 4.24
2723 2743 0.236711 GCTGTTGCTGTGTACTGCTG 59.763 55.000 13.71 0.00 40.79 4.41
2724 2744 1.586422 CTGTTGCTGTGTACTGCTGT 58.414 50.000 13.71 0.66 40.79 4.40
2725 2745 1.528586 CTGTTGCTGTGTACTGCTGTC 59.471 52.381 13.71 6.18 40.79 3.51
2726 2746 1.138859 TGTTGCTGTGTACTGCTGTCT 59.861 47.619 13.71 0.00 40.79 3.41
2727 2747 2.364002 TGTTGCTGTGTACTGCTGTCTA 59.636 45.455 13.71 0.00 40.79 2.59
2728 2748 3.006859 TGTTGCTGTGTACTGCTGTCTAT 59.993 43.478 13.71 0.00 40.79 1.98
2729 2749 4.219725 TGTTGCTGTGTACTGCTGTCTATA 59.780 41.667 13.71 0.00 40.79 1.31
2730 2750 5.105351 TGTTGCTGTGTACTGCTGTCTATAT 60.105 40.000 13.71 0.00 40.79 0.86
2731 2751 5.598416 TGCTGTGTACTGCTGTCTATATT 57.402 39.130 13.71 0.00 40.79 1.28
2732 2752 5.592054 TGCTGTGTACTGCTGTCTATATTC 58.408 41.667 13.71 0.00 40.79 1.75
2733 2753 5.360999 TGCTGTGTACTGCTGTCTATATTCT 59.639 40.000 13.71 0.00 40.79 2.40
2734 2754 5.689514 GCTGTGTACTGCTGTCTATATTCTG 59.310 44.000 0.00 0.00 37.75 3.02
2735 2755 6.681616 GCTGTGTACTGCTGTCTATATTCTGT 60.682 42.308 0.00 0.00 37.75 3.41
2736 2756 6.796426 TGTGTACTGCTGTCTATATTCTGTC 58.204 40.000 0.00 0.00 0.00 3.51
2737 2757 6.183360 TGTGTACTGCTGTCTATATTCTGTCC 60.183 42.308 0.00 0.00 0.00 4.02
2738 2758 5.891551 TGTACTGCTGTCTATATTCTGTCCA 59.108 40.000 0.00 0.00 0.00 4.02
2739 2759 5.939764 ACTGCTGTCTATATTCTGTCCAA 57.060 39.130 0.00 0.00 0.00 3.53
2740 2760 6.491714 ACTGCTGTCTATATTCTGTCCAAT 57.508 37.500 0.00 0.00 0.00 3.16
2741 2761 7.603180 ACTGCTGTCTATATTCTGTCCAATA 57.397 36.000 0.00 0.00 0.00 1.90
2742 2762 8.023021 ACTGCTGTCTATATTCTGTCCAATAA 57.977 34.615 0.00 0.00 0.00 1.40
2743 2763 8.654997 ACTGCTGTCTATATTCTGTCCAATAAT 58.345 33.333 0.00 0.00 0.00 1.28
2770 2790 6.900568 TTTTGTAACCTGTGCAAAAATCAG 57.099 33.333 0.00 0.00 38.59 2.90
2771 2791 5.843673 TTGTAACCTGTGCAAAAATCAGA 57.156 34.783 2.98 0.00 0.00 3.27
2772 2792 5.843673 TGTAACCTGTGCAAAAATCAGAA 57.156 34.783 2.98 0.00 0.00 3.02
2773 2793 6.214191 TGTAACCTGTGCAAAAATCAGAAA 57.786 33.333 2.98 0.00 0.00 2.52
2774 2794 6.634805 TGTAACCTGTGCAAAAATCAGAAAA 58.365 32.000 2.98 0.00 0.00 2.29
2775 2795 6.756074 TGTAACCTGTGCAAAAATCAGAAAAG 59.244 34.615 2.98 0.00 0.00 2.27
2776 2796 4.122046 ACCTGTGCAAAAATCAGAAAAGC 58.878 39.130 2.98 0.00 0.00 3.51
2777 2797 4.121317 CCTGTGCAAAAATCAGAAAAGCA 58.879 39.130 2.98 0.00 0.00 3.91
2778 2798 4.571580 CCTGTGCAAAAATCAGAAAAGCAA 59.428 37.500 2.98 0.00 31.78 3.91
2779 2799 5.064962 CCTGTGCAAAAATCAGAAAAGCAAA 59.935 36.000 2.98 0.00 31.78 3.68
2780 2800 6.403418 CCTGTGCAAAAATCAGAAAAGCAAAA 60.403 34.615 2.98 0.00 31.78 2.44
2781 2801 6.906659 TGTGCAAAAATCAGAAAAGCAAAAA 58.093 28.000 0.00 0.00 31.78 1.94
2808 2828 8.574196 AAAACAAATATTCATACTATTGGCGC 57.426 30.769 0.00 0.00 0.00 6.53
2809 2829 6.875948 ACAAATATTCATACTATTGGCGCA 57.124 33.333 10.83 0.00 0.00 6.09
2810 2830 7.452880 ACAAATATTCATACTATTGGCGCAT 57.547 32.000 10.83 0.00 0.00 4.73
2811 2831 7.530010 ACAAATATTCATACTATTGGCGCATC 58.470 34.615 10.83 0.00 0.00 3.91
2812 2832 7.174772 ACAAATATTCATACTATTGGCGCATCA 59.825 33.333 10.83 0.00 0.00 3.07
2813 2833 7.686438 AATATTCATACTATTGGCGCATCAA 57.314 32.000 10.83 5.49 0.00 2.57
2814 2834 5.618056 ATTCATACTATTGGCGCATCAAG 57.382 39.130 10.83 3.38 0.00 3.02
2815 2835 3.402110 TCATACTATTGGCGCATCAAGG 58.598 45.455 10.83 5.29 0.00 3.61
2816 2836 1.593196 TACTATTGGCGCATCAAGGC 58.407 50.000 10.83 0.00 0.00 4.35
2817 2837 0.394216 ACTATTGGCGCATCAAGGCA 60.394 50.000 10.83 0.00 42.55 4.75
2818 2838 0.309922 CTATTGGCGCATCAAGGCAG 59.690 55.000 10.83 0.77 44.87 4.85
2819 2839 0.107263 TATTGGCGCATCAAGGCAGA 60.107 50.000 10.83 0.00 44.87 4.26
2820 2840 1.381928 ATTGGCGCATCAAGGCAGAG 61.382 55.000 10.83 0.00 44.87 3.35
2821 2841 2.437359 GGCGCATCAAGGCAGAGT 60.437 61.111 10.83 0.00 0.00 3.24
2822 2842 2.758089 GGCGCATCAAGGCAGAGTG 61.758 63.158 10.83 0.00 0.00 3.51
2823 2843 2.789917 CGCATCAAGGCAGAGTGC 59.210 61.111 0.00 0.00 44.08 4.40
2824 2844 2.789917 GCATCAAGGCAGAGTGCG 59.210 61.111 0.00 0.00 46.21 5.34
2825 2845 2.789917 CATCAAGGCAGAGTGCGC 59.210 61.111 0.00 0.00 46.21 6.09
2832 2852 4.208632 GCAGAGTGCGCCATTAGT 57.791 55.556 4.18 0.00 31.71 2.24
2833 2853 3.362581 GCAGAGTGCGCCATTAGTA 57.637 52.632 4.18 0.00 31.71 1.82
2834 2854 1.871080 GCAGAGTGCGCCATTAGTAT 58.129 50.000 4.18 0.00 31.71 2.12
2835 2855 1.528586 GCAGAGTGCGCCATTAGTATG 59.471 52.381 4.18 0.00 31.71 2.39
2836 2856 1.528586 CAGAGTGCGCCATTAGTATGC 59.471 52.381 4.18 0.00 0.00 3.14
2837 2857 0.868406 GAGTGCGCCATTAGTATGCC 59.132 55.000 4.18 0.00 0.00 4.40
2838 2858 0.180171 AGTGCGCCATTAGTATGCCA 59.820 50.000 4.18 0.00 0.00 4.92
2839 2859 1.021202 GTGCGCCATTAGTATGCCAA 58.979 50.000 4.18 0.00 0.00 4.52
2840 2860 1.403679 GTGCGCCATTAGTATGCCAAA 59.596 47.619 4.18 0.00 0.00 3.28
2841 2861 1.675483 TGCGCCATTAGTATGCCAAAG 59.325 47.619 4.18 0.00 0.00 2.77
2842 2862 1.001378 GCGCCATTAGTATGCCAAAGG 60.001 52.381 0.00 0.00 0.00 3.11
2843 2863 2.571212 CGCCATTAGTATGCCAAAGGA 58.429 47.619 0.00 0.00 0.00 3.36
2844 2864 3.149196 CGCCATTAGTATGCCAAAGGAT 58.851 45.455 0.00 0.00 0.00 3.24
2845 2865 4.323417 CGCCATTAGTATGCCAAAGGATA 58.677 43.478 0.00 0.00 0.00 2.59
2846 2866 4.154195 CGCCATTAGTATGCCAAAGGATAC 59.846 45.833 0.00 0.00 0.00 2.24
2862 2882 2.744202 GGATACTAATGGCGCATCAAGG 59.256 50.000 10.83 0.00 0.00 3.61
2863 2883 1.593196 TACTAATGGCGCATCAAGGC 58.407 50.000 10.83 0.00 0.00 4.35
2867 2887 2.437180 TGGCGCATCAAGGCAGAG 60.437 61.111 10.83 0.00 39.30 3.35
2868 2888 2.437359 GGCGCATCAAGGCAGAGT 60.437 61.111 10.83 0.00 0.00 3.24
2869 2889 2.758089 GGCGCATCAAGGCAGAGTG 61.758 63.158 10.83 0.00 0.00 3.51
2870 2890 2.789917 CGCATCAAGGCAGAGTGC 59.210 61.111 0.00 0.00 44.08 4.40
2871 2891 2.789917 GCATCAAGGCAGAGTGCG 59.210 61.111 0.00 0.00 46.21 5.34
2872 2892 2.789917 CATCAAGGCAGAGTGCGC 59.210 61.111 0.00 0.00 46.21 6.09
2879 2899 4.208632 GCAGAGTGCGCCATTAGT 57.791 55.556 4.18 0.00 31.71 2.24
2880 2900 3.362581 GCAGAGTGCGCCATTAGTA 57.637 52.632 4.18 0.00 31.71 1.82
2881 2901 1.871080 GCAGAGTGCGCCATTAGTAT 58.129 50.000 4.18 0.00 31.71 2.12
2882 2902 1.528586 GCAGAGTGCGCCATTAGTATG 59.471 52.381 4.18 0.00 31.71 2.39
2883 2903 2.803133 GCAGAGTGCGCCATTAGTATGA 60.803 50.000 4.18 0.00 31.71 2.15
2884 2904 2.797156 CAGAGTGCGCCATTAGTATGAC 59.203 50.000 4.18 0.00 33.37 3.06
2885 2905 2.430694 AGAGTGCGCCATTAGTATGACA 59.569 45.455 4.18 0.00 33.37 3.58
2886 2906 3.118775 AGAGTGCGCCATTAGTATGACAA 60.119 43.478 4.18 0.00 33.37 3.18
2887 2907 3.605634 AGTGCGCCATTAGTATGACAAA 58.394 40.909 4.18 0.00 33.37 2.83
2888 2908 3.623060 AGTGCGCCATTAGTATGACAAAG 59.377 43.478 4.18 0.00 33.37 2.77
2889 2909 2.354510 TGCGCCATTAGTATGACAAAGC 59.645 45.455 4.18 0.00 33.37 3.51
2890 2910 2.354510 GCGCCATTAGTATGACAAAGCA 59.645 45.455 0.00 0.00 33.37 3.91
2891 2911 3.788797 GCGCCATTAGTATGACAAAGCAC 60.789 47.826 0.00 0.00 33.37 4.40
2892 2912 3.373748 CGCCATTAGTATGACAAAGCACA 59.626 43.478 0.00 0.00 33.37 4.57
2893 2913 4.035558 CGCCATTAGTATGACAAAGCACAT 59.964 41.667 0.00 0.00 33.37 3.21
2894 2914 5.276270 GCCATTAGTATGACAAAGCACATG 58.724 41.667 0.00 0.00 33.37 3.21
2895 2915 5.734220 GCCATTAGTATGACAAAGCACATGG 60.734 44.000 0.00 0.00 33.37 3.66
2896 2916 5.357878 CCATTAGTATGACAAAGCACATGGT 59.642 40.000 0.00 0.00 33.37 3.55
2897 2917 6.127647 CCATTAGTATGACAAAGCACATGGTT 60.128 38.462 0.00 0.00 33.81 3.67
2898 2918 7.066887 CCATTAGTATGACAAAGCACATGGTTA 59.933 37.037 0.00 0.00 32.81 2.85
2899 2919 5.880054 AGTATGACAAAGCACATGGTTAC 57.120 39.130 0.00 0.00 35.00 2.50
2900 2920 5.312895 AGTATGACAAAGCACATGGTTACA 58.687 37.500 0.00 0.00 35.00 2.41
2901 2921 5.945784 AGTATGACAAAGCACATGGTTACAT 59.054 36.000 0.00 6.54 37.99 2.29
2902 2922 7.109501 AGTATGACAAAGCACATGGTTACATA 58.890 34.615 0.00 5.73 34.99 2.29
2903 2923 7.775093 AGTATGACAAAGCACATGGTTACATAT 59.225 33.333 14.81 5.72 34.99 1.78
2904 2924 6.193514 TGACAAAGCACATGGTTACATATG 57.806 37.500 0.00 0.00 34.63 1.78
2905 2925 5.125257 TGACAAAGCACATGGTTACATATGG 59.875 40.000 7.80 0.00 32.15 2.74
2906 2926 4.142182 ACAAAGCACATGGTTACATATGGC 60.142 41.667 7.80 0.00 32.15 4.40
2907 2927 2.586425 AGCACATGGTTACATATGGCC 58.414 47.619 7.80 0.00 32.15 5.36
2908 2928 1.613437 GCACATGGTTACATATGGCCC 59.387 52.381 7.80 4.27 32.15 5.80
2909 2929 2.238521 CACATGGTTACATATGGCCCC 58.761 52.381 7.80 3.91 34.99 5.80
2910 2930 1.146982 ACATGGTTACATATGGCCCCC 59.853 52.381 7.80 2.13 34.99 5.40
2936 2956 1.238439 GCATACTAATGGCGCATGGT 58.762 50.000 10.83 5.48 33.38 3.55
2937 2957 1.069022 GCATACTAATGGCGCATGGTG 60.069 52.381 10.83 0.00 33.38 4.17
2938 2958 2.221169 CATACTAATGGCGCATGGTGT 58.779 47.619 10.83 4.70 0.00 4.16
2939 2959 2.411628 TACTAATGGCGCATGGTGTT 57.588 45.000 10.83 0.00 0.00 3.32
2940 2960 2.411628 ACTAATGGCGCATGGTGTTA 57.588 45.000 10.83 0.00 0.00 2.41
2941 2961 2.014128 ACTAATGGCGCATGGTGTTAC 58.986 47.619 10.83 0.00 0.00 2.50
2942 2962 2.013400 CTAATGGCGCATGGTGTTACA 58.987 47.619 10.83 0.00 0.00 2.41
2943 2963 1.473258 AATGGCGCATGGTGTTACAT 58.527 45.000 10.83 0.00 0.00 2.29
2944 2964 2.340210 ATGGCGCATGGTGTTACATA 57.660 45.000 10.83 0.00 0.00 2.29
2945 2965 1.374560 TGGCGCATGGTGTTACATAC 58.625 50.000 10.83 0.00 0.00 2.39
2946 2966 1.065782 TGGCGCATGGTGTTACATACT 60.066 47.619 10.83 0.00 0.00 2.12
2947 2967 2.168728 TGGCGCATGGTGTTACATACTA 59.831 45.455 10.83 0.00 0.00 1.82
2948 2968 3.199677 GGCGCATGGTGTTACATACTAA 58.800 45.455 10.83 0.00 0.00 2.24
2949 2969 3.813166 GGCGCATGGTGTTACATACTAAT 59.187 43.478 10.83 0.00 0.00 1.73
2950 2970 4.319477 GGCGCATGGTGTTACATACTAATG 60.319 45.833 10.83 0.00 39.17 1.90
2951 2971 4.319477 GCGCATGGTGTTACATACTAATGG 60.319 45.833 0.30 0.00 37.43 3.16
2952 2972 4.319477 CGCATGGTGTTACATACTAATGGC 60.319 45.833 0.00 0.00 37.43 4.40
2953 2973 4.319477 GCATGGTGTTACATACTAATGGCG 60.319 45.833 0.00 0.00 37.43 5.69
2954 2974 3.199677 TGGTGTTACATACTAATGGCGC 58.800 45.455 0.00 0.00 37.43 6.53
2955 2975 3.199677 GGTGTTACATACTAATGGCGCA 58.800 45.455 10.83 0.00 37.43 6.09
2956 2976 3.001939 GGTGTTACATACTAATGGCGCAC 59.998 47.826 10.83 0.00 37.43 5.34
2957 2977 3.869246 GTGTTACATACTAATGGCGCACT 59.131 43.478 10.83 0.00 37.43 4.40
2958 2978 3.868661 TGTTACATACTAATGGCGCACTG 59.131 43.478 10.83 0.00 37.43 3.66
2959 2979 1.299541 ACATACTAATGGCGCACTGC 58.700 50.000 10.83 0.00 45.38 4.40
2960 2980 1.134401 ACATACTAATGGCGCACTGCT 60.134 47.619 10.83 0.00 45.43 4.24
2961 2981 1.942657 CATACTAATGGCGCACTGCTT 59.057 47.619 10.83 0.00 45.43 3.91
2962 2982 1.368641 TACTAATGGCGCACTGCTTG 58.631 50.000 10.83 0.00 45.43 4.01
2963 2983 1.308069 ACTAATGGCGCACTGCTTGG 61.308 55.000 10.83 0.00 45.43 3.61
2964 2984 1.303236 TAATGGCGCACTGCTTGGT 60.303 52.632 10.83 0.00 45.43 3.67
2965 2985 1.585267 TAATGGCGCACTGCTTGGTG 61.585 55.000 10.83 0.00 45.43 4.17
2971 2991 3.367743 CACTGCTTGGTGCGCCAT 61.368 61.111 21.95 0.61 45.56 4.40
2972 2992 2.598394 ACTGCTTGGTGCGCCATT 60.598 55.556 21.95 0.00 45.56 3.16
2973 2993 1.303236 ACTGCTTGGTGCGCCATTA 60.303 52.632 21.95 4.95 45.56 1.90
2974 2994 1.308069 ACTGCTTGGTGCGCCATTAG 61.308 55.000 21.95 16.74 45.56 1.73
2975 2995 1.303236 TGCTTGGTGCGCCATTAGT 60.303 52.632 21.95 0.00 45.56 2.24
2976 2996 0.035915 TGCTTGGTGCGCCATTAGTA 60.036 50.000 21.95 12.42 45.56 1.82
2977 2997 1.308998 GCTTGGTGCGCCATTAGTAT 58.691 50.000 21.95 0.00 45.56 2.12
2978 2998 2.158885 TGCTTGGTGCGCCATTAGTATA 60.159 45.455 21.95 1.53 45.56 1.47
2979 2999 2.223377 GCTTGGTGCGCCATTAGTATAC 59.777 50.000 21.95 0.00 45.56 1.47
2980 3000 2.536761 TGGTGCGCCATTAGTATACC 57.463 50.000 16.89 2.32 40.46 2.73
2981 3001 1.763545 TGGTGCGCCATTAGTATACCA 59.236 47.619 16.89 5.52 40.46 3.25
2982 3002 2.224185 TGGTGCGCCATTAGTATACCAG 60.224 50.000 16.89 0.00 40.46 4.00
2983 3003 2.036733 GGTGCGCCATTAGTATACCAGA 59.963 50.000 12.58 0.00 34.09 3.86
2984 3004 3.306780 GGTGCGCCATTAGTATACCAGAT 60.307 47.826 12.58 0.00 34.09 2.90
2985 3005 4.081862 GGTGCGCCATTAGTATACCAGATA 60.082 45.833 12.58 0.00 34.09 1.98
2986 3006 4.863131 GTGCGCCATTAGTATACCAGATAC 59.137 45.833 4.18 0.00 0.00 2.24
2987 3007 4.770531 TGCGCCATTAGTATACCAGATACT 59.229 41.667 4.18 2.98 38.32 2.12
2988 3008 5.947566 TGCGCCATTAGTATACCAGATACTA 59.052 40.000 4.18 1.20 36.38 1.82
2989 3009 6.434965 TGCGCCATTAGTATACCAGATACTAA 59.565 38.462 15.81 15.81 45.52 2.24
2995 3015 5.326200 AGTATACCAGATACTAATGGCGC 57.674 43.478 0.00 0.00 40.45 6.53
2996 3016 4.770531 AGTATACCAGATACTAATGGCGCA 59.229 41.667 10.83 0.00 40.45 6.09
2997 3017 2.240493 ACCAGATACTAATGGCGCAC 57.760 50.000 10.83 0.00 40.45 5.34
2998 3018 1.202651 ACCAGATACTAATGGCGCACC 60.203 52.381 10.83 0.00 40.45 5.01
3039 3059 4.680171 AAAAATTCTAGTGGCGTGCTAC 57.320 40.909 0.00 0.00 0.00 3.58
3040 3060 3.611766 AAATTCTAGTGGCGTGCTACT 57.388 42.857 15.27 15.27 40.78 2.57
3041 3061 4.730949 AAATTCTAGTGGCGTGCTACTA 57.269 40.909 15.85 15.85 38.66 1.82
3042 3062 4.730949 AATTCTAGTGGCGTGCTACTAA 57.269 40.909 17.10 7.59 39.04 2.24
3043 3063 4.939052 ATTCTAGTGGCGTGCTACTAAT 57.061 40.909 17.10 9.35 39.04 1.73
3044 3064 3.710326 TCTAGTGGCGTGCTACTAATG 57.290 47.619 17.10 8.44 39.04 1.90
3045 3065 2.361119 TCTAGTGGCGTGCTACTAATGG 59.639 50.000 17.10 7.83 39.04 3.16
3046 3066 0.462047 AGTGGCGTGCTACTAATGGC 60.462 55.000 9.25 0.00 35.98 4.40
3047 3067 1.520564 TGGCGTGCTACTAATGGCG 60.521 57.895 0.00 0.00 34.35 5.69
3048 3068 2.626455 GCGTGCTACTAATGGCGC 59.374 61.111 0.00 0.00 39.31 6.53
3049 3069 2.171079 GCGTGCTACTAATGGCGCA 61.171 57.895 10.83 0.00 42.60 6.09
3050 3070 1.636340 CGTGCTACTAATGGCGCAC 59.364 57.895 10.83 0.00 46.74 5.34
3051 3071 2.014594 GTGCTACTAATGGCGCACC 58.985 57.895 10.83 0.00 45.08 5.01
3052 3072 1.520564 TGCTACTAATGGCGCACCG 60.521 57.895 10.83 0.00 39.70 4.94
3053 3073 2.244651 GCTACTAATGGCGCACCGG 61.245 63.158 10.83 0.00 39.70 5.28
3054 3074 1.143183 CTACTAATGGCGCACCGGT 59.857 57.895 10.83 0.00 39.70 5.28
3055 3075 0.386476 CTACTAATGGCGCACCGGTA 59.614 55.000 6.87 4.59 39.70 4.02
3056 3076 0.386476 TACTAATGGCGCACCGGTAG 59.614 55.000 6.87 5.70 39.70 3.18
3057 3077 1.143183 CTAATGGCGCACCGGTAGT 59.857 57.895 6.87 0.00 39.70 2.73
3065 3085 2.435938 CACCGGTAGTGCGCCATT 60.436 61.111 6.87 0.00 40.28 3.16
3066 3086 1.153529 CACCGGTAGTGCGCCATTA 60.154 57.895 6.87 0.00 40.28 1.90
3067 3087 1.143183 ACCGGTAGTGCGCCATTAG 59.857 57.895 4.49 0.00 0.00 1.73
3068 3088 1.143183 CCGGTAGTGCGCCATTAGT 59.857 57.895 4.18 0.00 0.00 2.24
3069 3089 0.386476 CCGGTAGTGCGCCATTAGTA 59.614 55.000 4.18 0.00 0.00 1.82
3070 3090 1.602165 CCGGTAGTGCGCCATTAGTAG 60.602 57.143 4.18 0.00 0.00 2.57
3071 3091 1.602165 CGGTAGTGCGCCATTAGTAGG 60.602 57.143 4.18 0.00 0.00 3.18
3081 3101 2.718563 CCATTAGTAGGCAAAACCGGT 58.281 47.619 0.00 0.00 46.52 5.28
3082 3102 2.422127 CCATTAGTAGGCAAAACCGGTG 59.578 50.000 8.52 0.00 46.52 4.94
3083 3103 2.934886 TTAGTAGGCAAAACCGGTGT 57.065 45.000 8.52 0.00 46.52 4.16
3084 3104 2.172851 TAGTAGGCAAAACCGGTGTG 57.827 50.000 8.52 11.44 46.52 3.82
3085 3105 1.170290 AGTAGGCAAAACCGGTGTGC 61.170 55.000 27.53 27.53 46.52 4.57
3088 3108 2.733945 GCAAAACCGGTGTGCCAT 59.266 55.556 25.95 0.05 31.94 4.40
3089 3109 1.068921 GCAAAACCGGTGTGCCATT 59.931 52.632 25.95 6.68 31.94 3.16
3090 3110 0.315568 GCAAAACCGGTGTGCCATTA 59.684 50.000 25.95 0.00 31.94 1.90
3091 3111 1.668628 GCAAAACCGGTGTGCCATTAG 60.669 52.381 25.95 4.65 31.94 1.73
3092 3112 1.611491 CAAAACCGGTGTGCCATTAGT 59.389 47.619 8.52 0.00 34.09 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.223572 GCAGCGCCTTATTTTACAGCAT 60.224 45.455 2.29 0.00 0.00 3.79
6 7 1.132262 GCAGCGCCTTATTTTACAGCA 59.868 47.619 2.29 0.00 0.00 4.41
156 157 2.278989 GCCCGTCGTTATAGCGCA 60.279 61.111 11.47 0.00 0.00 6.09
160 161 0.590195 AGTAGCGCCCGTCGTTATAG 59.410 55.000 2.29 0.00 41.07 1.31
250 251 3.181428 TGTGGATCGGATAGAGGAGATGT 60.181 47.826 0.00 0.00 0.00 3.06
304 305 4.161295 CGCGGGGGATTGAGAGCA 62.161 66.667 0.00 0.00 0.00 4.26
569 574 8.487028 AGCCTAGCTACTAAATCAAAATGTAGT 58.513 33.333 0.00 0.00 39.01 2.73
968 977 8.241497 TGAAGCAATATGAGCAAAGGATTAAT 57.759 30.769 3.57 0.00 0.00 1.40
992 1001 1.079888 GGTGGCGCCATTTTTCCTG 60.080 57.895 35.23 0.00 37.17 3.86
1014 1026 0.246635 ACAGTCGACATAGTGGTGGC 59.753 55.000 19.50 0.00 0.00 5.01
1148 1160 5.119931 TGCAGTAATGCCAACACTAAAAG 57.880 39.130 13.34 0.00 0.00 2.27
1182 1194 3.000322 GGACGATCTGTGTGAAATAAGCG 60.000 47.826 0.00 0.00 0.00 4.68
1191 1203 0.391528 TGCATGGGACGATCTGTGTG 60.392 55.000 0.00 0.00 0.00 3.82
1273 1285 1.002684 CTCGACCTCCATAGTGTACGC 60.003 57.143 0.00 0.00 0.00 4.42
1298 1310 2.799978 CCAATCTGCGACATATTGCGTA 59.200 45.455 10.37 0.00 38.17 4.42
1391 1403 2.877708 GCTAGCTTGGGTCTTTCTGCTT 60.878 50.000 7.70 0.00 32.72 3.91
1537 1549 2.103941 CCTCCTCACTCAGCCTTATTCC 59.896 54.545 0.00 0.00 0.00 3.01
1541 1553 1.342474 CCTCCTCCTCACTCAGCCTTA 60.342 57.143 0.00 0.00 0.00 2.69
1570 1582 1.214175 TGGCGGAATTATGTCCCACAT 59.786 47.619 0.00 0.00 42.35 3.21
1603 1615 2.124736 CACGAATGGCACCCCGAT 60.125 61.111 11.11 0.00 0.00 4.18
1688 1700 7.121611 TGGACTGTACACTAAGTAATTCATCGA 59.878 37.037 0.00 0.00 33.72 3.59
1876 1892 0.739112 GTCCAGCTGAGCCTTCTTCG 60.739 60.000 17.39 0.00 0.00 3.79
1956 1972 2.940410 CCAACCGAGTTTAAGTGTGTGT 59.060 45.455 0.00 0.00 0.00 3.72
1988 2004 3.881688 CGAAGATTCTTGCCATTGAGGAT 59.118 43.478 3.03 0.00 41.22 3.24
1994 2010 3.057315 CCAACACGAAGATTCTTGCCATT 60.057 43.478 3.03 0.00 30.36 3.16
2142 2160 8.446599 TGTAGTTCTAGATGATATTGACGACA 57.553 34.615 0.00 0.00 0.00 4.35
2187 2205 5.675575 GCATTCTCAAGCAATACAAGGTCAG 60.676 44.000 0.00 0.00 0.00 3.51
2198 2216 3.570975 AGTCAACATGCATTCTCAAGCAA 59.429 39.130 0.00 0.00 44.88 3.91
2251 2269 3.061322 CCACGACGAGTAATTTGGAACA 58.939 45.455 0.00 0.00 0.00 3.18
2516 2536 4.151582 GTAGCGCGGCCCTTACCA 62.152 66.667 8.83 0.00 0.00 3.25
2581 2601 1.247567 GGTTTTGAGGCTAGCAGCAA 58.752 50.000 18.24 16.36 44.75 3.91
2609 2629 4.202535 CCACTACTAGGGAAAACCCAAGTT 60.203 45.833 8.05 0.00 41.63 2.66
2613 2633 2.908351 GACCACTACTAGGGAAAACCCA 59.092 50.000 8.05 0.00 41.63 4.51
2635 2655 9.830975 TCATCATATTAGTCTCCGAATTCAAAA 57.169 29.630 6.22 0.00 0.00 2.44
2636 2656 9.830975 TTCATCATATTAGTCTCCGAATTCAAA 57.169 29.630 6.22 0.00 0.00 2.69
2640 2660 9.784531 ACAATTCATCATATTAGTCTCCGAATT 57.215 29.630 0.00 0.00 32.37 2.17
2644 2664 9.307121 GGATACAATTCATCATATTAGTCTCCG 57.693 37.037 0.32 0.00 0.00 4.63
2645 2665 9.307121 CGGATACAATTCATCATATTAGTCTCC 57.693 37.037 0.00 0.00 0.00 3.71
2646 2666 9.307121 CCGGATACAATTCATCATATTAGTCTC 57.693 37.037 0.00 0.00 0.00 3.36
2647 2667 9.035890 TCCGGATACAATTCATCATATTAGTCT 57.964 33.333 0.00 0.00 0.00 3.24
2648 2668 9.088512 GTCCGGATACAATTCATCATATTAGTC 57.911 37.037 7.81 0.00 0.00 2.59
2649 2669 8.593679 TGTCCGGATACAATTCATCATATTAGT 58.406 33.333 7.81 0.00 0.00 2.24
2650 2670 8.873830 GTGTCCGGATACAATTCATCATATTAG 58.126 37.037 24.84 0.00 0.00 1.73
2651 2671 8.593679 AGTGTCCGGATACAATTCATCATATTA 58.406 33.333 30.04 0.00 0.00 0.98
2652 2672 7.453393 AGTGTCCGGATACAATTCATCATATT 58.547 34.615 30.04 4.72 0.00 1.28
2653 2673 7.009179 AGTGTCCGGATACAATTCATCATAT 57.991 36.000 30.04 4.92 0.00 1.78
2654 2674 6.419484 AGTGTCCGGATACAATTCATCATA 57.581 37.500 30.04 0.00 0.00 2.15
2655 2675 5.296151 AGTGTCCGGATACAATTCATCAT 57.704 39.130 30.04 6.15 0.00 2.45
2656 2676 4.753516 AGTGTCCGGATACAATTCATCA 57.246 40.909 30.04 7.03 0.00 3.07
2657 2677 7.155328 AGATTAGTGTCCGGATACAATTCATC 58.845 38.462 30.04 21.07 0.00 2.92
2658 2678 7.067496 AGATTAGTGTCCGGATACAATTCAT 57.933 36.000 30.04 15.10 0.00 2.57
2659 2679 6.479972 AGATTAGTGTCCGGATACAATTCA 57.520 37.500 30.04 9.31 0.00 2.57
2660 2680 7.210873 AGAAGATTAGTGTCCGGATACAATTC 58.789 38.462 30.04 22.79 0.00 2.17
2661 2681 7.125792 AGAAGATTAGTGTCCGGATACAATT 57.874 36.000 30.04 17.17 0.00 2.32
2662 2682 6.732896 AGAAGATTAGTGTCCGGATACAAT 57.267 37.500 30.04 24.60 0.00 2.71
2663 2683 7.834881 ATAGAAGATTAGTGTCCGGATACAA 57.165 36.000 30.04 21.66 0.00 2.41
2664 2684 7.287005 ACAATAGAAGATTAGTGTCCGGATACA 59.713 37.037 30.04 12.98 26.36 2.29
2665 2685 7.659186 ACAATAGAAGATTAGTGTCCGGATAC 58.341 38.462 22.69 22.69 26.36 2.24
2666 2686 7.834881 ACAATAGAAGATTAGTGTCCGGATA 57.165 36.000 7.81 0.10 26.36 2.59
2667 2687 6.732896 ACAATAGAAGATTAGTGTCCGGAT 57.267 37.500 7.81 0.00 26.36 4.18
2668 2688 7.834881 ATACAATAGAAGATTAGTGTCCGGA 57.165 36.000 0.00 0.00 34.18 5.14
2669 2689 7.326305 CGAATACAATAGAAGATTAGTGTCCGG 59.674 40.741 0.00 0.00 34.18 5.14
2670 2690 8.074370 TCGAATACAATAGAAGATTAGTGTCCG 58.926 37.037 0.00 0.00 34.18 4.79
2671 2691 9.915629 ATCGAATACAATAGAAGATTAGTGTCC 57.084 33.333 0.00 0.00 34.18 4.02
2679 2699 9.149225 GCAGATTCATCGAATACAATAGAAGAT 57.851 33.333 0.00 0.00 31.89 2.40
2680 2700 8.363390 AGCAGATTCATCGAATACAATAGAAGA 58.637 33.333 0.00 0.00 31.89 2.87
2681 2701 8.433893 CAGCAGATTCATCGAATACAATAGAAG 58.566 37.037 0.00 0.00 31.89 2.85
2682 2702 7.928167 ACAGCAGATTCATCGAATACAATAGAA 59.072 33.333 0.00 0.00 31.89 2.10
2683 2703 7.436933 ACAGCAGATTCATCGAATACAATAGA 58.563 34.615 0.00 0.00 31.89 1.98
2684 2704 7.649370 ACAGCAGATTCATCGAATACAATAG 57.351 36.000 0.00 0.00 31.89 1.73
2685 2705 7.518848 GCAACAGCAGATTCATCGAATACAATA 60.519 37.037 0.00 0.00 31.89 1.90
2686 2706 6.722301 CAACAGCAGATTCATCGAATACAAT 58.278 36.000 0.00 0.00 31.89 2.71
2687 2707 5.447683 GCAACAGCAGATTCATCGAATACAA 60.448 40.000 0.00 0.00 31.89 2.41
2688 2708 4.034394 GCAACAGCAGATTCATCGAATACA 59.966 41.667 0.00 0.00 31.89 2.29
2689 2709 4.272018 AGCAACAGCAGATTCATCGAATAC 59.728 41.667 0.00 0.00 31.89 1.89
2690 2710 4.271776 CAGCAACAGCAGATTCATCGAATA 59.728 41.667 0.00 0.00 31.89 1.75
2691 2711 3.064958 CAGCAACAGCAGATTCATCGAAT 59.935 43.478 0.00 0.00 34.71 3.34
2692 2712 2.417586 CAGCAACAGCAGATTCATCGAA 59.582 45.455 0.00 0.00 0.00 3.71
2693 2713 2.004733 CAGCAACAGCAGATTCATCGA 58.995 47.619 0.00 0.00 0.00 3.59
2694 2714 1.736126 ACAGCAACAGCAGATTCATCG 59.264 47.619 0.00 0.00 0.00 3.84
2695 2715 2.486982 ACACAGCAACAGCAGATTCATC 59.513 45.455 0.00 0.00 0.00 2.92
2696 2716 2.511659 ACACAGCAACAGCAGATTCAT 58.488 42.857 0.00 0.00 0.00 2.57
2697 2717 1.971481 ACACAGCAACAGCAGATTCA 58.029 45.000 0.00 0.00 0.00 2.57
2698 2718 3.070018 AGTACACAGCAACAGCAGATTC 58.930 45.455 0.00 0.00 0.00 2.52
2699 2719 2.810274 CAGTACACAGCAACAGCAGATT 59.190 45.455 0.00 0.00 0.00 2.40
2700 2720 2.420642 CAGTACACAGCAACAGCAGAT 58.579 47.619 0.00 0.00 0.00 2.90
2701 2721 1.869774 CAGTACACAGCAACAGCAGA 58.130 50.000 0.00 0.00 0.00 4.26
2702 2722 0.236711 GCAGTACACAGCAACAGCAG 59.763 55.000 0.00 0.00 0.00 4.24
2703 2723 0.179048 AGCAGTACACAGCAACAGCA 60.179 50.000 0.00 0.00 31.20 4.41
2704 2724 0.236711 CAGCAGTACACAGCAACAGC 59.763 55.000 0.00 0.00 0.00 4.40
2705 2725 1.528586 GACAGCAGTACACAGCAACAG 59.471 52.381 0.00 0.00 0.00 3.16
2706 2726 1.138859 AGACAGCAGTACACAGCAACA 59.861 47.619 0.00 0.00 0.00 3.33
2707 2727 1.871080 AGACAGCAGTACACAGCAAC 58.129 50.000 0.00 0.00 0.00 4.17
2708 2728 3.961480 ATAGACAGCAGTACACAGCAA 57.039 42.857 0.00 0.00 0.00 3.91
2709 2729 5.360999 AGAATATAGACAGCAGTACACAGCA 59.639 40.000 0.00 0.00 0.00 4.41
2710 2730 5.689514 CAGAATATAGACAGCAGTACACAGC 59.310 44.000 0.00 0.00 0.00 4.40
2711 2731 6.800543 ACAGAATATAGACAGCAGTACACAG 58.199 40.000 0.00 0.00 0.00 3.66
2712 2732 6.183360 GGACAGAATATAGACAGCAGTACACA 60.183 42.308 0.00 0.00 0.00 3.72
2713 2733 6.183360 TGGACAGAATATAGACAGCAGTACAC 60.183 42.308 0.00 0.00 0.00 2.90
2714 2734 5.891551 TGGACAGAATATAGACAGCAGTACA 59.108 40.000 0.00 0.00 0.00 2.90
2715 2735 6.392625 TGGACAGAATATAGACAGCAGTAC 57.607 41.667 0.00 0.00 0.00 2.73
2716 2736 7.603180 ATTGGACAGAATATAGACAGCAGTA 57.397 36.000 0.00 0.00 0.00 2.74
2717 2737 5.939764 TTGGACAGAATATAGACAGCAGT 57.060 39.130 0.00 0.00 0.00 4.40
2744 2764 9.206870 CTGATTTTTGCACAGGTTACAAAATAT 57.793 29.630 9.59 7.36 41.44 1.28
2745 2765 8.417106 TCTGATTTTTGCACAGGTTACAAAATA 58.583 29.630 9.59 4.27 41.44 1.40
2746 2766 7.271511 TCTGATTTTTGCACAGGTTACAAAAT 58.728 30.769 9.59 2.04 41.44 1.82
2747 2767 6.634805 TCTGATTTTTGCACAGGTTACAAAA 58.365 32.000 1.84 6.18 40.47 2.44
2748 2768 6.214191 TCTGATTTTTGCACAGGTTACAAA 57.786 33.333 1.84 0.00 33.19 2.83
2749 2769 5.843673 TCTGATTTTTGCACAGGTTACAA 57.156 34.783 1.84 0.00 33.19 2.41
2750 2770 5.843673 TTCTGATTTTTGCACAGGTTACA 57.156 34.783 1.84 0.00 33.19 2.41
2751 2771 6.292328 GCTTTTCTGATTTTTGCACAGGTTAC 60.292 38.462 1.84 0.00 33.19 2.50
2752 2772 5.752955 GCTTTTCTGATTTTTGCACAGGTTA 59.247 36.000 1.84 0.00 33.19 2.85
2753 2773 4.571984 GCTTTTCTGATTTTTGCACAGGTT 59.428 37.500 1.84 0.00 33.19 3.50
2754 2774 4.122046 GCTTTTCTGATTTTTGCACAGGT 58.878 39.130 1.84 0.00 33.19 4.00
2755 2775 4.121317 TGCTTTTCTGATTTTTGCACAGG 58.879 39.130 1.84 0.00 33.19 4.00
2756 2776 5.721876 TTGCTTTTCTGATTTTTGCACAG 57.278 34.783 0.00 0.00 0.00 3.66
2757 2777 6.492007 TTTTGCTTTTCTGATTTTTGCACA 57.508 29.167 0.00 0.00 0.00 4.57
2782 2802 9.030301 GCGCCAATAGTATGAATATTTGTTTTT 57.970 29.630 0.00 0.00 0.00 1.94
2783 2803 8.194104 TGCGCCAATAGTATGAATATTTGTTTT 58.806 29.630 4.18 0.00 0.00 2.43
2784 2804 7.711846 TGCGCCAATAGTATGAATATTTGTTT 58.288 30.769 4.18 0.00 0.00 2.83
2785 2805 7.270757 TGCGCCAATAGTATGAATATTTGTT 57.729 32.000 4.18 0.00 0.00 2.83
2786 2806 6.875948 TGCGCCAATAGTATGAATATTTGT 57.124 33.333 4.18 0.00 0.00 2.83
2787 2807 7.529158 TGATGCGCCAATAGTATGAATATTTG 58.471 34.615 4.18 0.00 0.00 2.32
2788 2808 7.686438 TGATGCGCCAATAGTATGAATATTT 57.314 32.000 4.18 0.00 0.00 1.40
2789 2809 7.148188 CCTTGATGCGCCAATAGTATGAATATT 60.148 37.037 4.18 0.00 0.00 1.28
2790 2810 6.317140 CCTTGATGCGCCAATAGTATGAATAT 59.683 38.462 4.18 0.00 0.00 1.28
2791 2811 5.643348 CCTTGATGCGCCAATAGTATGAATA 59.357 40.000 4.18 0.00 0.00 1.75
2792 2812 4.456911 CCTTGATGCGCCAATAGTATGAAT 59.543 41.667 4.18 0.00 0.00 2.57
2793 2813 3.814842 CCTTGATGCGCCAATAGTATGAA 59.185 43.478 4.18 0.00 0.00 2.57
2794 2814 3.402110 CCTTGATGCGCCAATAGTATGA 58.598 45.455 4.18 0.00 0.00 2.15
2795 2815 2.095567 GCCTTGATGCGCCAATAGTATG 60.096 50.000 4.18 0.00 0.00 2.39
2796 2816 2.154462 GCCTTGATGCGCCAATAGTAT 58.846 47.619 4.18 0.00 0.00 2.12
2797 2817 1.134250 TGCCTTGATGCGCCAATAGTA 60.134 47.619 4.18 0.00 0.00 1.82
2798 2818 0.394216 TGCCTTGATGCGCCAATAGT 60.394 50.000 4.18 0.00 0.00 2.12
2799 2819 0.309922 CTGCCTTGATGCGCCAATAG 59.690 55.000 4.18 0.00 0.00 1.73
2800 2820 0.107263 TCTGCCTTGATGCGCCAATA 60.107 50.000 4.18 0.00 0.00 1.90
2801 2821 1.378911 TCTGCCTTGATGCGCCAAT 60.379 52.632 4.18 0.00 0.00 3.16
2802 2822 2.033911 TCTGCCTTGATGCGCCAA 59.966 55.556 4.18 1.18 0.00 4.52
2803 2823 2.437180 CTCTGCCTTGATGCGCCA 60.437 61.111 4.18 0.00 0.00 5.69
2804 2824 2.437359 ACTCTGCCTTGATGCGCC 60.437 61.111 4.18 0.00 0.00 6.53
2805 2825 2.789917 CACTCTGCCTTGATGCGC 59.210 61.111 0.00 0.00 0.00 6.09
2806 2826 2.789917 GCACTCTGCCTTGATGCG 59.210 61.111 0.00 0.00 37.42 4.73
2807 2827 2.789917 CGCACTCTGCCTTGATGC 59.210 61.111 0.00 0.00 41.12 3.91
2808 2828 2.789917 GCGCACTCTGCCTTGATG 59.210 61.111 0.30 0.00 41.12 3.07
2815 2835 1.528586 CATACTAATGGCGCACTCTGC 59.471 52.381 10.83 0.00 40.69 4.26
2816 2836 1.528586 GCATACTAATGGCGCACTCTG 59.471 52.381 10.83 0.00 33.38 3.35
2817 2837 1.871080 GCATACTAATGGCGCACTCT 58.129 50.000 10.83 0.00 33.38 3.24
2828 2848 6.940298 GCCATTAGTATCCTTTGGCATACTAA 59.060 38.462 15.98 15.98 45.55 2.24
2829 2849 6.472887 GCCATTAGTATCCTTTGGCATACTA 58.527 40.000 7.34 1.73 43.29 1.82
2830 2850 5.316987 GCCATTAGTATCCTTTGGCATACT 58.683 41.667 7.34 3.47 43.29 2.12
2831 2851 4.154195 CGCCATTAGTATCCTTTGGCATAC 59.846 45.833 12.24 0.00 43.67 2.39
2832 2852 4.323417 CGCCATTAGTATCCTTTGGCATA 58.677 43.478 12.24 0.00 43.67 3.14
2833 2853 3.149196 CGCCATTAGTATCCTTTGGCAT 58.851 45.455 12.24 0.00 43.67 4.40
2834 2854 2.571212 CGCCATTAGTATCCTTTGGCA 58.429 47.619 12.24 0.00 43.67 4.92
2835 2855 1.266989 GCGCCATTAGTATCCTTTGGC 59.733 52.381 0.00 2.19 41.71 4.52
2836 2856 2.571212 TGCGCCATTAGTATCCTTTGG 58.429 47.619 4.18 0.00 0.00 3.28
2837 2857 3.814842 TGATGCGCCATTAGTATCCTTTG 59.185 43.478 4.18 0.00 31.13 2.77
2838 2858 4.085357 TGATGCGCCATTAGTATCCTTT 57.915 40.909 4.18 0.00 31.13 3.11
2839 2859 3.769739 TGATGCGCCATTAGTATCCTT 57.230 42.857 4.18 0.00 31.13 3.36
2840 2860 3.557898 CCTTGATGCGCCATTAGTATCCT 60.558 47.826 4.18 0.00 31.13 3.24
2841 2861 2.744202 CCTTGATGCGCCATTAGTATCC 59.256 50.000 4.18 0.00 31.13 2.59
2842 2862 2.160417 GCCTTGATGCGCCATTAGTATC 59.840 50.000 4.18 0.00 0.00 2.24
2843 2863 2.154462 GCCTTGATGCGCCATTAGTAT 58.846 47.619 4.18 0.00 0.00 2.12
2844 2864 1.134250 TGCCTTGATGCGCCATTAGTA 60.134 47.619 4.18 0.00 0.00 1.82
2845 2865 0.394216 TGCCTTGATGCGCCATTAGT 60.394 50.000 4.18 0.00 0.00 2.24
2846 2866 0.309922 CTGCCTTGATGCGCCATTAG 59.690 55.000 4.18 0.00 0.00 1.73
2847 2867 0.107263 TCTGCCTTGATGCGCCATTA 60.107 50.000 4.18 0.00 0.00 1.90
2848 2868 1.378911 TCTGCCTTGATGCGCCATT 60.379 52.632 4.18 0.00 0.00 3.16
2849 2869 1.822613 CTCTGCCTTGATGCGCCAT 60.823 57.895 4.18 0.00 0.00 4.40
2850 2870 2.437180 CTCTGCCTTGATGCGCCA 60.437 61.111 4.18 0.00 0.00 5.69
2851 2871 2.437359 ACTCTGCCTTGATGCGCC 60.437 61.111 4.18 0.00 0.00 6.53
2852 2872 2.789917 CACTCTGCCTTGATGCGC 59.210 61.111 0.00 0.00 0.00 6.09
2853 2873 2.789917 GCACTCTGCCTTGATGCG 59.210 61.111 0.00 0.00 37.42 4.73
2854 2874 2.789917 CGCACTCTGCCTTGATGC 59.210 61.111 0.00 0.00 41.12 3.91
2855 2875 2.789917 GCGCACTCTGCCTTGATG 59.210 61.111 0.30 0.00 41.12 3.07
2862 2882 1.528586 CATACTAATGGCGCACTCTGC 59.471 52.381 10.83 0.00 40.69 4.26
2863 2883 2.797156 GTCATACTAATGGCGCACTCTG 59.203 50.000 10.83 0.00 33.61 3.35
2864 2884 2.430694 TGTCATACTAATGGCGCACTCT 59.569 45.455 10.83 0.00 40.81 3.24
2865 2885 2.821546 TGTCATACTAATGGCGCACTC 58.178 47.619 10.83 0.00 40.81 3.51
2866 2886 2.979814 TGTCATACTAATGGCGCACT 57.020 45.000 10.83 0.00 40.81 4.40
2867 2887 3.788797 GCTTTGTCATACTAATGGCGCAC 60.789 47.826 10.83 0.00 40.81 5.34
2868 2888 2.354510 GCTTTGTCATACTAATGGCGCA 59.645 45.455 10.83 0.00 40.81 6.09
2869 2889 2.354510 TGCTTTGTCATACTAATGGCGC 59.645 45.455 0.00 0.00 40.81 6.53
2870 2890 3.373748 TGTGCTTTGTCATACTAATGGCG 59.626 43.478 0.00 0.00 40.81 5.69
2871 2891 4.963276 TGTGCTTTGTCATACTAATGGC 57.037 40.909 0.00 0.00 38.26 4.40
2872 2892 5.357878 ACCATGTGCTTTGTCATACTAATGG 59.642 40.000 0.00 0.00 33.61 3.16
2873 2893 6.441093 ACCATGTGCTTTGTCATACTAATG 57.559 37.500 0.00 0.00 0.00 1.90
2874 2894 7.609918 TGTAACCATGTGCTTTGTCATACTAAT 59.390 33.333 0.00 0.00 0.00 1.73
2875 2895 6.937465 TGTAACCATGTGCTTTGTCATACTAA 59.063 34.615 0.00 0.00 0.00 2.24
2876 2896 6.468543 TGTAACCATGTGCTTTGTCATACTA 58.531 36.000 0.00 0.00 0.00 1.82
2877 2897 5.312895 TGTAACCATGTGCTTTGTCATACT 58.687 37.500 0.00 0.00 0.00 2.12
2878 2898 5.621197 TGTAACCATGTGCTTTGTCATAC 57.379 39.130 0.00 0.00 0.00 2.39
2879 2899 7.013178 CCATATGTAACCATGTGCTTTGTCATA 59.987 37.037 1.24 0.00 38.48 2.15
2880 2900 6.183360 CCATATGTAACCATGTGCTTTGTCAT 60.183 38.462 1.24 0.00 38.48 3.06
2881 2901 5.125257 CCATATGTAACCATGTGCTTTGTCA 59.875 40.000 1.24 0.00 38.48 3.58
2882 2902 5.581605 CCATATGTAACCATGTGCTTTGTC 58.418 41.667 1.24 0.00 38.48 3.18
2883 2903 4.142182 GCCATATGTAACCATGTGCTTTGT 60.142 41.667 1.24 0.00 38.48 2.83
2884 2904 4.362279 GCCATATGTAACCATGTGCTTTG 58.638 43.478 1.24 0.00 38.48 2.77
2885 2905 3.384467 GGCCATATGTAACCATGTGCTTT 59.616 43.478 0.00 0.00 38.48 3.51
2886 2906 2.958355 GGCCATATGTAACCATGTGCTT 59.042 45.455 0.00 0.00 38.48 3.91
2887 2907 2.586425 GGCCATATGTAACCATGTGCT 58.414 47.619 0.00 0.00 38.48 4.40
2888 2908 1.613437 GGGCCATATGTAACCATGTGC 59.387 52.381 4.39 0.00 38.48 4.57
2889 2909 2.238521 GGGGCCATATGTAACCATGTG 58.761 52.381 4.39 0.00 39.24 3.21
2890 2910 1.146982 GGGGGCCATATGTAACCATGT 59.853 52.381 4.39 0.00 32.29 3.21
2891 2911 1.923356 GGGGGCCATATGTAACCATG 58.077 55.000 4.39 0.00 32.29 3.66
2907 2927 0.840722 ATTAGTATGCCTCCCGGGGG 60.841 60.000 23.50 19.89 35.12 5.40
2908 2928 0.324943 CATTAGTATGCCTCCCGGGG 59.675 60.000 23.50 6.77 35.12 5.73
2909 2929 0.324943 CCATTAGTATGCCTCCCGGG 59.675 60.000 16.85 16.85 38.36 5.73
2910 2930 0.321653 GCCATTAGTATGCCTCCCGG 60.322 60.000 0.00 0.00 0.00 5.73
2911 2931 0.670546 CGCCATTAGTATGCCTCCCG 60.671 60.000 0.00 0.00 0.00 5.14
2912 2932 0.955919 GCGCCATTAGTATGCCTCCC 60.956 60.000 0.00 0.00 0.00 4.30
2913 2933 0.250295 TGCGCCATTAGTATGCCTCC 60.250 55.000 4.18 0.00 0.00 4.30
2914 2934 1.466167 CATGCGCCATTAGTATGCCTC 59.534 52.381 4.18 0.00 0.00 4.70
2915 2935 1.527034 CATGCGCCATTAGTATGCCT 58.473 50.000 4.18 0.00 0.00 4.75
2916 2936 0.523072 CCATGCGCCATTAGTATGCC 59.477 55.000 4.18 0.00 31.70 4.40
2917 2937 1.069022 CACCATGCGCCATTAGTATGC 60.069 52.381 4.18 0.00 31.70 3.14
2918 2938 2.221169 ACACCATGCGCCATTAGTATG 58.779 47.619 4.18 0.00 0.00 2.39
2919 2939 2.638480 ACACCATGCGCCATTAGTAT 57.362 45.000 4.18 0.00 0.00 2.12
2920 2940 2.411628 AACACCATGCGCCATTAGTA 57.588 45.000 4.18 0.00 0.00 1.82
2921 2941 2.014128 GTAACACCATGCGCCATTAGT 58.986 47.619 4.18 0.00 0.00 2.24
2922 2942 2.013400 TGTAACACCATGCGCCATTAG 58.987 47.619 4.18 0.00 0.00 1.73
2923 2943 2.115343 TGTAACACCATGCGCCATTA 57.885 45.000 4.18 0.00 0.00 1.90
2924 2944 1.473258 ATGTAACACCATGCGCCATT 58.527 45.000 4.18 0.00 0.00 3.16
2925 2945 1.946768 GTATGTAACACCATGCGCCAT 59.053 47.619 4.18 0.00 0.00 4.40
2926 2946 1.065782 AGTATGTAACACCATGCGCCA 60.066 47.619 4.18 0.00 33.29 5.69
2927 2947 1.663695 AGTATGTAACACCATGCGCC 58.336 50.000 4.18 0.00 33.29 6.53
2928 2948 4.319477 CCATTAGTATGTAACACCATGCGC 60.319 45.833 0.00 0.00 33.29 6.09
2929 2949 4.319477 GCCATTAGTATGTAACACCATGCG 60.319 45.833 0.00 0.00 33.29 4.73
2930 2950 4.319477 CGCCATTAGTATGTAACACCATGC 60.319 45.833 0.00 0.00 0.00 4.06
2931 2951 4.319477 GCGCCATTAGTATGTAACACCATG 60.319 45.833 0.00 0.00 0.00 3.66
2932 2952 3.813166 GCGCCATTAGTATGTAACACCAT 59.187 43.478 0.00 0.00 0.00 3.55
2933 2953 3.199677 GCGCCATTAGTATGTAACACCA 58.800 45.455 0.00 0.00 0.00 4.17
2934 2954 3.001939 GTGCGCCATTAGTATGTAACACC 59.998 47.826 4.18 0.00 0.00 4.16
2935 2955 3.869246 AGTGCGCCATTAGTATGTAACAC 59.131 43.478 4.18 0.00 0.00 3.32
2936 2956 3.868661 CAGTGCGCCATTAGTATGTAACA 59.131 43.478 4.18 0.00 0.00 2.41
2937 2957 3.303132 GCAGTGCGCCATTAGTATGTAAC 60.303 47.826 4.18 0.00 32.94 2.50
2938 2958 2.869801 GCAGTGCGCCATTAGTATGTAA 59.130 45.455 4.18 0.00 32.94 2.41
2939 2959 2.102420 AGCAGTGCGCCATTAGTATGTA 59.898 45.455 10.00 0.00 44.04 2.29
2940 2960 1.134401 AGCAGTGCGCCATTAGTATGT 60.134 47.619 10.00 0.00 44.04 2.29
2941 2961 1.586422 AGCAGTGCGCCATTAGTATG 58.414 50.000 10.00 0.00 44.04 2.39
2942 2962 1.942657 CAAGCAGTGCGCCATTAGTAT 59.057 47.619 10.00 0.00 44.04 2.12
2943 2963 1.368641 CAAGCAGTGCGCCATTAGTA 58.631 50.000 10.00 0.00 44.04 1.82
2944 2964 1.308069 CCAAGCAGTGCGCCATTAGT 61.308 55.000 10.00 0.00 44.04 2.24
2945 2965 1.308069 ACCAAGCAGTGCGCCATTAG 61.308 55.000 10.00 0.00 44.04 1.73
2946 2966 1.303236 ACCAAGCAGTGCGCCATTA 60.303 52.632 10.00 0.00 44.04 1.90
2947 2967 2.598394 ACCAAGCAGTGCGCCATT 60.598 55.556 10.00 0.00 44.04 3.16
2948 2968 3.367743 CACCAAGCAGTGCGCCAT 61.368 61.111 10.00 0.00 44.04 4.40
2962 2982 2.036733 TCTGGTATACTAATGGCGCACC 59.963 50.000 10.83 5.12 0.00 5.01
2963 2983 3.380479 TCTGGTATACTAATGGCGCAC 57.620 47.619 10.83 0.00 0.00 5.34
2964 2984 4.770531 AGTATCTGGTATACTAATGGCGCA 59.229 41.667 10.83 0.00 33.45 6.09
2965 2985 5.326200 AGTATCTGGTATACTAATGGCGC 57.674 43.478 0.00 0.00 33.45 6.53
2971 2991 6.434965 TGCGCCATTAGTATCTGGTATACTAA 59.565 38.462 16.03 16.03 45.52 2.24
2972 2992 5.947566 TGCGCCATTAGTATCTGGTATACTA 59.052 40.000 4.18 0.00 36.38 1.82
2973 2993 4.770531 TGCGCCATTAGTATCTGGTATACT 59.229 41.667 4.18 3.40 38.32 2.12
2974 2994 4.863131 GTGCGCCATTAGTATCTGGTATAC 59.137 45.833 4.18 0.00 34.86 1.47
2975 2995 4.081862 GGTGCGCCATTAGTATCTGGTATA 60.082 45.833 12.58 0.00 34.86 1.47
2976 2996 3.306780 GGTGCGCCATTAGTATCTGGTAT 60.307 47.826 12.58 0.00 34.86 2.73
2977 2997 2.036733 GGTGCGCCATTAGTATCTGGTA 59.963 50.000 12.58 0.00 34.86 3.25
2978 2998 1.202651 GGTGCGCCATTAGTATCTGGT 60.203 52.381 12.58 0.00 34.86 4.00
2979 2999 1.202639 TGGTGCGCCATTAGTATCTGG 60.203 52.381 16.89 0.00 40.46 3.86
2980 3000 2.138320 CTGGTGCGCCATTAGTATCTG 58.862 52.381 21.54 0.01 45.05 2.90
2981 3001 1.541233 GCTGGTGCGCCATTAGTATCT 60.541 52.381 21.54 0.00 45.05 1.98
2982 3002 0.868406 GCTGGTGCGCCATTAGTATC 59.132 55.000 21.54 0.00 45.05 2.24
2983 3003 3.006672 GCTGGTGCGCCATTAGTAT 57.993 52.632 21.54 0.00 45.05 2.12
2984 3004 4.532490 GCTGGTGCGCCATTAGTA 57.468 55.556 21.54 0.00 45.05 1.82
3018 3038 4.324267 AGTAGCACGCCACTAGAATTTTT 58.676 39.130 0.00 0.00 0.00 1.94
3019 3039 3.939066 AGTAGCACGCCACTAGAATTTT 58.061 40.909 0.00 0.00 0.00 1.82
3020 3040 3.611766 AGTAGCACGCCACTAGAATTT 57.388 42.857 0.00 0.00 0.00 1.82
3021 3041 4.730949 TTAGTAGCACGCCACTAGAATT 57.269 40.909 0.00 0.00 0.00 2.17
3022 3042 4.501571 CCATTAGTAGCACGCCACTAGAAT 60.502 45.833 0.00 0.00 0.00 2.40
3023 3043 3.181479 CCATTAGTAGCACGCCACTAGAA 60.181 47.826 0.00 0.00 0.00 2.10
3024 3044 2.361119 CCATTAGTAGCACGCCACTAGA 59.639 50.000 0.00 0.00 0.00 2.43
3025 3045 2.743938 CCATTAGTAGCACGCCACTAG 58.256 52.381 0.00 0.00 0.00 2.57
3026 3046 1.202486 GCCATTAGTAGCACGCCACTA 60.202 52.381 0.00 0.00 0.00 2.74
3027 3047 0.462047 GCCATTAGTAGCACGCCACT 60.462 55.000 0.00 0.00 0.00 4.00
3028 3048 1.762222 CGCCATTAGTAGCACGCCAC 61.762 60.000 0.00 0.00 0.00 5.01
3029 3049 1.520564 CGCCATTAGTAGCACGCCA 60.521 57.895 0.00 0.00 0.00 5.69
3030 3050 2.882366 GCGCCATTAGTAGCACGCC 61.882 63.158 0.00 0.00 40.43 5.68
3031 3051 2.171079 TGCGCCATTAGTAGCACGC 61.171 57.895 4.18 0.00 46.05 5.34
3032 3052 4.102561 TGCGCCATTAGTAGCACG 57.897 55.556 4.18 0.00 34.39 5.34
3034 3054 1.520564 CGGTGCGCCATTAGTAGCA 60.521 57.895 18.18 0.00 37.26 3.49
3035 3055 2.244651 CCGGTGCGCCATTAGTAGC 61.245 63.158 18.18 0.00 34.09 3.58
3036 3056 0.386476 TACCGGTGCGCCATTAGTAG 59.614 55.000 19.93 0.00 34.09 2.57
3037 3057 0.386476 CTACCGGTGCGCCATTAGTA 59.614 55.000 19.93 10.70 34.09 1.82
3038 3058 1.143183 CTACCGGTGCGCCATTAGT 59.857 57.895 19.93 10.09 34.09 2.24
3039 3059 1.143183 ACTACCGGTGCGCCATTAG 59.857 57.895 19.93 17.03 34.09 1.73
3040 3060 1.153529 CACTACCGGTGCGCCATTA 60.154 57.895 19.93 5.39 39.22 1.90
3041 3061 2.435938 CACTACCGGTGCGCCATT 60.436 61.111 19.93 4.33 39.22 3.16
3049 3069 1.143183 CTAATGGCGCACTACCGGT 59.857 57.895 13.98 13.98 0.00 5.28
3050 3070 0.386476 TACTAATGGCGCACTACCGG 59.614 55.000 10.83 0.00 0.00 5.28
3051 3071 1.602165 CCTACTAATGGCGCACTACCG 60.602 57.143 10.83 0.00 0.00 4.02
3052 3072 1.872653 GCCTACTAATGGCGCACTACC 60.873 57.143 10.83 0.00 41.03 3.18
3053 3073 1.499049 GCCTACTAATGGCGCACTAC 58.501 55.000 10.83 0.00 41.03 2.73
3054 3074 3.980583 GCCTACTAATGGCGCACTA 57.019 52.632 10.83 0.00 41.03 2.74
3055 3075 4.857251 GCCTACTAATGGCGCACT 57.143 55.556 10.83 0.00 41.03 4.40
3061 3081 2.422127 CACCGGTTTTGCCTACTAATGG 59.578 50.000 2.97 0.00 34.25 3.16
3062 3082 3.078837 ACACCGGTTTTGCCTACTAATG 58.921 45.455 2.97 0.00 34.25 1.90
3063 3083 3.078837 CACACCGGTTTTGCCTACTAAT 58.921 45.455 2.97 0.00 34.25 1.73
3064 3084 2.496111 CACACCGGTTTTGCCTACTAA 58.504 47.619 2.97 0.00 34.25 2.24
3065 3085 1.878948 GCACACCGGTTTTGCCTACTA 60.879 52.381 22.49 0.00 34.25 1.82
3066 3086 1.170290 GCACACCGGTTTTGCCTACT 61.170 55.000 22.49 0.00 34.25 2.57
3067 3087 1.284715 GCACACCGGTTTTGCCTAC 59.715 57.895 22.49 0.65 34.25 3.18
3068 3088 3.752704 GCACACCGGTTTTGCCTA 58.247 55.556 22.49 0.00 34.25 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.