Multiple sequence alignment - TraesCS7B01G464800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G464800 chr7B 100.000 3930 0 0 1 3930 721196663 721200592 0.000000e+00 7258.0
1 TraesCS7B01G464800 chr7B 93.694 111 4 2 1 110 535690843 535690735 3.140000e-36 163.0
2 TraesCS7B01G464800 chr7B 86.885 61 4 2 306 364 666637029 666637087 9.120000e-07 65.8
3 TraesCS7B01G464800 chr7A 89.901 2535 204 27 1412 3930 719565111 719567609 0.000000e+00 3216.0
4 TraesCS7B01G464800 chr7A 86.087 575 46 15 713 1266 719564379 719564940 4.370000e-164 588.0
5 TraesCS7B01G464800 chr7A 87.097 62 4 1 263 320 655373777 655373838 2.530000e-07 67.6
6 TraesCS7B01G464800 chr7D 91.300 2230 155 21 1712 3930 623533219 623535420 0.000000e+00 3007.0
7 TraesCS7B01G464800 chr7D 85.647 641 44 22 594 1215 623531993 623532604 7.170000e-177 630.0
8 TraesCS7B01G464800 chr7D 78.440 436 51 15 1287 1717 623532750 623533147 1.090000e-60 244.0
9 TraesCS7B01G464800 chr7D 89.474 190 16 4 92 279 623531602 623531789 1.830000e-58 237.0
10 TraesCS7B01G464800 chr7D 93.182 44 3 0 1223 1266 623532632 623532675 9.120000e-07 65.8
11 TraesCS7B01G464800 chr7D 96.970 33 1 0 332 364 588087706 588087738 5.490000e-04 56.5
12 TraesCS7B01G464800 chr2A 81.682 333 38 6 713 1027 759977675 759978002 5.040000e-64 255.0
13 TraesCS7B01G464800 chr2A 88.235 68 3 2 258 320 289727590 289727523 4.210000e-10 76.8
14 TraesCS7B01G464800 chr1B 84.942 259 28 9 1289 1547 650268285 650268532 6.520000e-63 252.0
15 TraesCS7B01G464800 chr1B 83.824 136 12 3 1135 1260 650265885 650266020 1.920000e-23 121.0
16 TraesCS7B01G464800 chr4B 84.556 259 29 8 1289 1547 648973164 648973411 3.030000e-61 246.0
17 TraesCS7B01G464800 chr4B 97.826 92 2 0 1 92 33622953 33623044 4.060000e-35 159.0
18 TraesCS7B01G464800 chr4B 97.826 92 2 0 1 92 653049581 653049672 4.060000e-35 159.0
19 TraesCS7B01G464800 chr4B 87.805 123 5 3 1154 1266 648972967 648973089 6.850000e-28 135.0
20 TraesCS7B01G464800 chr4B 100.000 28 0 0 335 362 66606995 66606968 7.000000e-03 52.8
21 TraesCS7B01G464800 chr6A 96.000 100 4 0 1 100 464513291 464513192 3.140000e-36 163.0
22 TraesCS7B01G464800 chr6A 88.732 71 3 2 255 320 610518790 610518860 9.050000e-12 82.4
23 TraesCS7B01G464800 chr3B 95.918 98 4 0 1 98 655032842 655032745 4.060000e-35 159.0
24 TraesCS7B01G464800 chr3B 94.059 101 6 0 1 101 667390099 667389999 1.890000e-33 154.0
25 TraesCS7B01G464800 chr2B 95.918 98 4 0 1 98 653633449 653633352 4.060000e-35 159.0
26 TraesCS7B01G464800 chr2B 93.333 105 6 1 1 105 321764770 321764667 1.890000e-33 154.0
27 TraesCS7B01G464800 chr2B 93.269 104 6 1 2 105 321769479 321769581 6.800000e-33 152.0
28 TraesCS7B01G464800 chr2B 94.595 37 1 1 330 366 556184634 556184599 5.490000e-04 56.5
29 TraesCS7B01G464800 chr5B 89.474 76 3 2 250 320 501957079 501957154 1.500000e-14 91.6
30 TraesCS7B01G464800 chr5D 86.076 79 6 2 251 324 334419898 334419976 3.260000e-11 80.5
31 TraesCS7B01G464800 chr5D 83.871 62 6 1 263 320 52265466 52265405 5.490000e-04 56.5
32 TraesCS7B01G464800 chr5D 96.970 33 1 0 332 364 68254589 68254621 5.490000e-04 56.5
33 TraesCS7B01G464800 chr1D 88.235 68 3 2 258 320 238693796 238693863 4.210000e-10 76.8
34 TraesCS7B01G464800 chr1D 96.970 33 1 0 332 364 384153360 384153392 5.490000e-04 56.5
35 TraesCS7B01G464800 chr4A 84.211 76 6 3 251 321 17382878 17382952 7.050000e-08 69.4
36 TraesCS7B01G464800 chr2D 75.714 140 26 6 458 596 11096439 11096307 3.280000e-06 63.9
37 TraesCS7B01G464800 chr4D 82.353 68 7 3 258 320 440018115 440018048 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G464800 chr7B 721196663 721200592 3929 False 7258.00 7258 100.0000 1 3930 1 chr7B.!!$F2 3929
1 TraesCS7B01G464800 chr7A 719564379 719567609 3230 False 1902.00 3216 87.9940 713 3930 2 chr7A.!!$F2 3217
2 TraesCS7B01G464800 chr7D 623531602 623535420 3818 False 836.76 3007 87.6086 92 3930 5 chr7D.!!$F2 3838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 497 0.036306 AAAAGACGCAATCCCTCCGT 59.964 50.0 0.00 0.00 37.99 4.69 F
549 609 0.040958 GTACATCCGTACGTAGCCCG 60.041 60.0 15.21 0.00 38.77 6.13 F
619 679 0.170561 ACAAGCGCTCTCGTATTCGT 59.829 50.0 12.06 0.00 38.14 3.85 F
1458 1625 0.031178 GCCTGCACAAACTTGTCTGG 59.969 55.0 0.00 3.63 39.91 3.86 F
1475 1644 0.179092 TGGTGATCTGCTGATCTGCG 60.179 55.0 27.48 13.30 46.84 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1598 0.031178 GTTTGTGCAGGCAAGAGGTG 59.969 55.0 0.00 0.00 0.00 4.00 R
1439 1606 0.031178 CCAGACAAGTTTGTGCAGGC 59.969 55.0 1.62 0.00 42.43 4.85 R
2125 2376 0.036577 GGCTCCCCATGAGATCATCG 60.037 60.0 0.00 0.00 44.42 3.84 R
2924 3175 0.037512 CACTCACTCAGGCCTCACAG 60.038 60.0 0.00 0.99 0.00 3.66 R
2944 3195 0.185175 AGGAGGGGTGACACCAAAAC 59.815 55.0 25.75 12.82 41.02 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.707624 ACTTGTCATTGAAATGGATGTATGT 57.292 32.000 3.31 0.00 37.03 2.29
25 26 8.806429 ACTTGTCATTGAAATGGATGTATGTA 57.194 30.769 3.31 0.00 37.03 2.29
26 27 8.896744 ACTTGTCATTGAAATGGATGTATGTAG 58.103 33.333 3.31 0.00 37.03 2.74
27 28 9.112725 CTTGTCATTGAAATGGATGTATGTAGA 57.887 33.333 3.31 0.00 37.03 2.59
28 29 9.631257 TTGTCATTGAAATGGATGTATGTAGAT 57.369 29.630 3.31 0.00 37.03 1.98
29 30 9.059260 TGTCATTGAAATGGATGTATGTAGATG 57.941 33.333 3.31 0.00 37.03 2.90
30 31 9.060347 GTCATTGAAATGGATGTATGTAGATGT 57.940 33.333 3.31 0.00 37.03 3.06
51 52 9.717942 AGATGTATTTTAGTTCTAGATGCATCC 57.282 33.333 23.06 7.42 39.26 3.51
52 53 9.494271 GATGTATTTTAGTTCTAGATGCATCCA 57.506 33.333 23.06 9.05 35.30 3.41
54 55 9.851686 TGTATTTTAGTTCTAGATGCATCCATT 57.148 29.630 23.06 7.62 0.00 3.16
58 59 8.806429 TTTAGTTCTAGATGCATCCATTTTCA 57.194 30.769 23.06 1.65 0.00 2.69
59 60 8.985315 TTAGTTCTAGATGCATCCATTTTCAT 57.015 30.769 23.06 4.58 0.00 2.57
60 61 7.507733 AGTTCTAGATGCATCCATTTTCATC 57.492 36.000 23.06 5.56 36.49 2.92
61 62 6.489361 AGTTCTAGATGCATCCATTTTCATCC 59.511 38.462 23.06 1.70 36.81 3.51
62 63 5.944135 TCTAGATGCATCCATTTTCATCCA 58.056 37.500 23.06 0.00 36.81 3.41
63 64 6.549242 TCTAGATGCATCCATTTTCATCCAT 58.451 36.000 23.06 2.35 36.81 3.41
64 65 7.008332 TCTAGATGCATCCATTTTCATCCATT 58.992 34.615 23.06 1.91 36.81 3.16
65 66 6.494666 AGATGCATCCATTTTCATCCATTT 57.505 33.333 23.06 0.00 36.81 2.32
66 67 6.895782 AGATGCATCCATTTTCATCCATTTT 58.104 32.000 23.06 0.00 36.81 1.82
67 68 6.765989 AGATGCATCCATTTTCATCCATTTTG 59.234 34.615 23.06 0.00 36.81 2.44
68 69 6.051179 TGCATCCATTTTCATCCATTTTGA 57.949 33.333 0.00 0.00 0.00 2.69
69 70 6.654959 TGCATCCATTTTCATCCATTTTGAT 58.345 32.000 0.00 0.00 0.00 2.57
70 71 6.540551 TGCATCCATTTTCATCCATTTTGATG 59.459 34.615 0.00 0.00 42.84 3.07
82 83 8.469200 TCATCCATTTTGATGACAAGTAATTCC 58.531 33.333 0.00 0.00 44.65 3.01
83 84 6.851609 TCCATTTTGATGACAAGTAATTCCG 58.148 36.000 0.00 0.00 37.32 4.30
84 85 6.035843 CCATTTTGATGACAAGTAATTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
85 86 6.127758 CCATTTTGATGACAAGTAATTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
86 87 5.873179 TTTGATGACAAGTAATTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
87 88 3.517602 TGATGACAAGTAATTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
88 89 2.373540 TGACAAGTAATTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
89 90 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
90 91 2.094390 TGACAAGTAATTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
97 98 1.492764 ATTCCGGACGGAGGTTGTAT 58.507 50.000 13.64 0.61 46.06 2.29
201 202 6.101332 TGATAGTGAAATCAAATGCCAAAGC 58.899 36.000 0.00 0.00 32.97 3.51
209 210 1.070445 CAAATGCCAAAGCTTGACCCA 59.930 47.619 0.00 0.00 40.80 4.51
213 214 1.767681 TGCCAAAGCTTGACCCAAAAT 59.232 42.857 0.00 0.00 40.80 1.82
214 215 2.145536 GCCAAAGCTTGACCCAAAATG 58.854 47.619 0.00 0.00 35.50 2.32
215 216 2.145536 CCAAAGCTTGACCCAAAATGC 58.854 47.619 0.00 0.00 0.00 3.56
216 217 2.485124 CCAAAGCTTGACCCAAAATGCA 60.485 45.455 0.00 0.00 0.00 3.96
223 225 4.450053 CTTGACCCAAAATGCAAAAAGGA 58.550 39.130 0.00 0.00 0.00 3.36
238 240 7.826690 TGCAAAAAGGACTAATAAATCCTGAC 58.173 34.615 0.00 0.00 44.97 3.51
245 247 5.537674 GGACTAATAAATCCTGACGGAGGTA 59.462 44.000 2.93 0.00 44.06 3.08
268 271 1.622312 ACAAAGAAGTACCCCTCCGTC 59.378 52.381 0.00 0.00 0.00 4.79
271 274 1.305549 GAAGTACCCCTCCGTCCCA 60.306 63.158 0.00 0.00 0.00 4.37
272 275 0.690077 GAAGTACCCCTCCGTCCCAT 60.690 60.000 0.00 0.00 0.00 4.00
277 280 2.735259 ACCCCTCCGTCCCATAATAT 57.265 50.000 0.00 0.00 0.00 1.28
279 282 4.363546 ACCCCTCCGTCCCATAATATAT 57.636 45.455 0.00 0.00 0.00 0.86
281 284 4.265124 ACCCCTCCGTCCCATAATATATGA 60.265 45.833 0.00 0.00 0.00 2.15
282 285 4.345257 CCCCTCCGTCCCATAATATATGAG 59.655 50.000 0.00 0.00 0.00 2.90
283 286 5.208890 CCCTCCGTCCCATAATATATGAGA 58.791 45.833 0.00 0.00 0.00 3.27
284 287 5.303078 CCCTCCGTCCCATAATATATGAGAG 59.697 48.000 0.00 0.00 0.00 3.20
288 291 8.202461 TCCGTCCCATAATATATGAGAGTTTT 57.798 34.615 0.00 0.00 0.00 2.43
289 292 8.656806 TCCGTCCCATAATATATGAGAGTTTTT 58.343 33.333 0.00 0.00 0.00 1.94
290 293 8.721478 CCGTCCCATAATATATGAGAGTTTTTG 58.279 37.037 0.00 0.00 0.00 2.44
291 294 9.273016 CGTCCCATAATATATGAGAGTTTTTGT 57.727 33.333 0.00 0.00 0.00 2.83
302 305 7.948278 ATGAGAGTTTTTGTACAGTAGTGTC 57.052 36.000 6.44 0.05 38.19 3.67
304 307 7.324935 TGAGAGTTTTTGTACAGTAGTGTCAA 58.675 34.615 6.44 8.68 38.19 3.18
305 308 7.820386 TGAGAGTTTTTGTACAGTAGTGTCAAA 59.180 33.333 6.44 13.67 38.19 2.69
307 310 9.005777 AGAGTTTTTGTACAGTAGTGTCAAAAA 57.994 29.630 27.64 27.64 42.88 1.94
309 312 7.867591 GTTTTTGTACAGTAGTGTCAAAAACG 58.132 34.615 33.48 6.42 46.82 3.60
312 315 4.505191 TGTACAGTAGTGTCAAAAACGCTC 59.495 41.667 6.44 0.00 45.69 5.03
313 316 3.793559 ACAGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
314 317 4.189231 ACAGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
315 318 5.353938 ACAGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
316 319 5.989777 ACAGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
319 322 8.656849 CAGTAGTGTCAAAAACGCTCTTATATT 58.343 33.333 0.00 0.00 45.69 1.28
320 323 9.216117 AGTAGTGTCAAAAACGCTCTTATATTT 57.784 29.630 0.00 0.00 45.69 1.40
321 324 9.474249 GTAGTGTCAAAAACGCTCTTATATTTC 57.526 33.333 0.00 0.00 45.69 2.17
322 325 8.094798 AGTGTCAAAAACGCTCTTATATTTCA 57.905 30.769 0.00 0.00 45.69 2.69
323 326 8.730680 AGTGTCAAAAACGCTCTTATATTTCAT 58.269 29.630 0.00 0.00 45.69 2.57
324 327 8.788813 GTGTCAAAAACGCTCTTATATTTCATG 58.211 33.333 0.00 0.00 35.42 3.07
325 328 8.511321 TGTCAAAAACGCTCTTATATTTCATGT 58.489 29.630 0.00 0.00 0.00 3.21
326 329 9.982291 GTCAAAAACGCTCTTATATTTCATGTA 57.018 29.630 0.00 0.00 0.00 2.29
372 432 5.424252 TGAAACAGAGGGAGTATTCGGTTAT 59.576 40.000 0.00 0.00 32.68 1.89
377 437 2.704065 AGGGAGTATTCGGTTATGTGGG 59.296 50.000 0.00 0.00 0.00 4.61
381 441 4.334481 GGAGTATTCGGTTATGTGGGTTTG 59.666 45.833 0.00 0.00 0.00 2.93
394 454 8.552865 GTTATGTGGGTTTGTTAAAATTTCACC 58.447 33.333 0.00 0.00 0.00 4.02
410 470 0.460284 CACCGAAATAGCTGGCTCGT 60.460 55.000 0.00 0.00 0.00 4.18
413 473 1.202371 CCGAAATAGCTGGCTCGTGTA 60.202 52.381 0.00 0.00 0.00 2.90
436 496 1.165270 AAAAAGACGCAATCCCTCCG 58.835 50.000 0.00 0.00 0.00 4.63
437 497 0.036306 AAAAGACGCAATCCCTCCGT 59.964 50.000 0.00 0.00 37.99 4.69
438 498 0.036306 AAAGACGCAATCCCTCCGTT 59.964 50.000 0.00 0.00 35.06 4.44
439 499 0.391263 AAGACGCAATCCCTCCGTTC 60.391 55.000 0.00 0.00 35.06 3.95
440 500 2.125673 ACGCAATCCCTCCGTTCG 60.126 61.111 0.00 0.00 0.00 3.95
441 501 2.125673 CGCAATCCCTCCGTTCGT 60.126 61.111 0.00 0.00 0.00 3.85
442 502 2.452813 CGCAATCCCTCCGTTCGTG 61.453 63.158 0.00 0.00 0.00 4.35
443 503 1.079405 GCAATCCCTCCGTTCGTGA 60.079 57.895 0.00 0.00 0.00 4.35
444 504 0.672401 GCAATCCCTCCGTTCGTGAA 60.672 55.000 0.00 0.00 0.00 3.18
445 505 2.012051 GCAATCCCTCCGTTCGTGAAT 61.012 52.381 0.00 0.00 0.00 2.57
446 506 2.740580 GCAATCCCTCCGTTCGTGAATA 60.741 50.000 0.00 0.00 0.00 1.75
447 507 2.864343 CAATCCCTCCGTTCGTGAATAC 59.136 50.000 0.00 0.00 0.00 1.89
448 508 1.548081 TCCCTCCGTTCGTGAATACA 58.452 50.000 0.00 0.00 0.00 2.29
449 509 1.894466 TCCCTCCGTTCGTGAATACAA 59.106 47.619 0.00 0.00 0.00 2.41
450 510 2.094390 TCCCTCCGTTCGTGAATACAAG 60.094 50.000 0.00 0.00 0.00 3.16
451 511 2.353406 CCCTCCGTTCGTGAATACAAGT 60.353 50.000 0.00 0.00 0.00 3.16
452 512 2.921754 CCTCCGTTCGTGAATACAAGTC 59.078 50.000 0.00 0.00 0.00 3.01
453 513 3.571571 CTCCGTTCGTGAATACAAGTCA 58.428 45.455 0.00 0.00 0.00 3.41
454 514 4.174009 CTCCGTTCGTGAATACAAGTCAT 58.826 43.478 0.00 0.00 0.00 3.06
455 515 4.562082 TCCGTTCGTGAATACAAGTCATT 58.438 39.130 0.00 0.00 0.00 2.57
456 516 4.387559 TCCGTTCGTGAATACAAGTCATTG 59.612 41.667 0.00 0.00 42.46 2.82
472 532 8.362860 CAAGTCATTGTAGAGAGTCCAATATG 57.637 38.462 0.00 0.00 0.00 1.78
473 533 7.060383 AGTCATTGTAGAGAGTCCAATATGG 57.940 40.000 0.00 0.00 39.43 2.74
474 534 6.613271 AGTCATTGTAGAGAGTCCAATATGGT 59.387 38.462 0.00 0.00 39.03 3.55
475 535 6.926272 GTCATTGTAGAGAGTCCAATATGGTC 59.074 42.308 0.00 0.00 39.03 4.02
476 536 6.841229 TCATTGTAGAGAGTCCAATATGGTCT 59.159 38.462 0.00 0.00 38.59 3.85
477 537 8.004801 TCATTGTAGAGAGTCCAATATGGTCTA 58.995 37.037 0.00 0.00 36.07 2.59
478 538 7.584122 TTGTAGAGAGTCCAATATGGTCTAC 57.416 40.000 13.75 13.75 40.23 2.59
479 539 6.669631 TGTAGAGAGTCCAATATGGTCTACA 58.330 40.000 17.09 17.09 43.81 2.74
480 540 7.298374 TGTAGAGAGTCCAATATGGTCTACAT 58.702 38.462 17.09 0.00 42.48 2.29
481 541 8.445588 TGTAGAGAGTCCAATATGGTCTACATA 58.554 37.037 17.09 0.00 42.48 2.29
482 542 7.768807 AGAGAGTCCAATATGGTCTACATAC 57.231 40.000 0.00 0.00 44.41 2.39
483 543 6.431543 AGAGAGTCCAATATGGTCTACATACG 59.568 42.308 0.00 0.00 44.41 3.06
484 544 5.477291 AGAGTCCAATATGGTCTACATACGG 59.523 44.000 0.00 0.00 44.41 4.02
485 545 5.391256 AGTCCAATATGGTCTACATACGGA 58.609 41.667 0.00 0.00 44.41 4.69
486 546 5.477291 AGTCCAATATGGTCTACATACGGAG 59.523 44.000 7.30 0.00 44.41 4.63
487 547 4.219944 TCCAATATGGTCTACATACGGAGC 59.780 45.833 0.00 0.00 44.41 4.70
488 548 4.021456 CCAATATGGTCTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
489 549 5.510690 CCAATATGGTCTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
490 550 5.801531 ATATGGTCTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
491 551 3.965379 TGGTCTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 37.09 2.44
492 552 4.274602 TGGTCTACATACGGAGCAAAAA 57.725 40.909 0.00 0.00 37.09 1.94
538 598 7.459394 AAAAATGTCTACATACGTACATCCG 57.541 36.000 0.00 0.00 35.10 4.18
539 599 5.762825 AATGTCTACATACGTACATCCGT 57.237 39.130 0.00 0.00 44.50 4.69
540 600 6.866010 AATGTCTACATACGTACATCCGTA 57.134 37.500 0.00 0.00 46.22 4.02
541 601 5.657470 TGTCTACATACGTACATCCGTAC 57.343 43.478 0.00 0.00 45.13 3.67
548 608 3.853623 GTACATCCGTACGTAGCCC 57.146 57.895 15.21 0.00 38.77 5.19
549 609 0.040958 GTACATCCGTACGTAGCCCG 60.041 60.000 15.21 0.00 38.77 6.13
562 622 4.050852 CGTAGCCCGTATTAAAACCTCT 57.949 45.455 0.00 0.00 0.00 3.69
563 623 5.186996 CGTAGCCCGTATTAAAACCTCTA 57.813 43.478 0.00 0.00 0.00 2.43
564 624 5.591099 CGTAGCCCGTATTAAAACCTCTAA 58.409 41.667 0.00 0.00 0.00 2.10
565 625 6.042143 CGTAGCCCGTATTAAAACCTCTAAA 58.958 40.000 0.00 0.00 0.00 1.85
566 626 6.534793 CGTAGCCCGTATTAAAACCTCTAAAA 59.465 38.462 0.00 0.00 0.00 1.52
567 627 7.064490 CGTAGCCCGTATTAAAACCTCTAAAAA 59.936 37.037 0.00 0.00 0.00 1.94
588 648 7.668525 AAAAAGACTTGTATCTAGAAACGGG 57.331 36.000 0.00 0.00 0.00 5.28
589 649 5.340439 AAGACTTGTATCTAGAAACGGGG 57.660 43.478 0.00 0.00 0.00 5.73
590 650 3.705072 AGACTTGTATCTAGAAACGGGGG 59.295 47.826 0.00 0.00 0.00 5.40
591 651 3.703052 GACTTGTATCTAGAAACGGGGGA 59.297 47.826 0.00 0.00 0.00 4.81
592 652 4.098894 ACTTGTATCTAGAAACGGGGGAA 58.901 43.478 0.00 0.00 0.00 3.97
612 672 2.263077 AGTATTCAACAAGCGCTCTCG 58.737 47.619 12.06 4.93 39.07 4.04
616 676 2.363788 TCAACAAGCGCTCTCGTATT 57.636 45.000 12.06 0.00 38.14 1.89
617 677 2.259618 TCAACAAGCGCTCTCGTATTC 58.740 47.619 12.06 0.00 38.14 1.75
618 678 1.007011 CAACAAGCGCTCTCGTATTCG 60.007 52.381 12.06 0.00 38.14 3.34
619 679 0.170561 ACAAGCGCTCTCGTATTCGT 59.829 50.000 12.06 0.00 38.14 3.85
620 680 1.399440 ACAAGCGCTCTCGTATTCGTA 59.601 47.619 12.06 0.00 38.14 3.43
621 681 2.033049 ACAAGCGCTCTCGTATTCGTAT 59.967 45.455 12.06 0.00 38.14 3.06
622 682 2.598000 AGCGCTCTCGTATTCGTATC 57.402 50.000 2.64 0.00 38.14 2.24
623 683 1.871676 AGCGCTCTCGTATTCGTATCA 59.128 47.619 2.64 0.00 38.14 2.15
633 693 5.998553 TCGTATTCGTATCATTGACTCCTC 58.001 41.667 0.00 0.00 38.33 3.71
641 701 5.163854 CGTATCATTGACTCCTCACAAAACC 60.164 44.000 0.00 0.00 0.00 3.27
643 703 4.389374 TCATTGACTCCTCACAAAACCTC 58.611 43.478 0.00 0.00 0.00 3.85
646 706 2.104792 TGACTCCTCACAAAACCTCCTG 59.895 50.000 0.00 0.00 0.00 3.86
698 758 1.559682 GTGTTCTTCCTGCCAGGGATA 59.440 52.381 11.68 0.00 35.59 2.59
699 759 1.839994 TGTTCTTCCTGCCAGGGATAG 59.160 52.381 11.68 6.51 35.59 2.08
703 763 4.759793 TCTTCCTGCCAGGGATAGTATA 57.240 45.455 11.68 0.00 35.59 1.47
704 764 5.087923 TCTTCCTGCCAGGGATAGTATAA 57.912 43.478 11.68 0.00 35.59 0.98
705 765 5.665701 TCTTCCTGCCAGGGATAGTATAAT 58.334 41.667 11.68 0.00 35.59 1.28
706 766 6.811574 TCTTCCTGCCAGGGATAGTATAATA 58.188 40.000 11.68 0.00 35.59 0.98
707 767 7.430844 TCTTCCTGCCAGGGATAGTATAATAT 58.569 38.462 11.68 0.00 35.59 1.28
708 768 8.574853 TCTTCCTGCCAGGGATAGTATAATATA 58.425 37.037 11.68 0.00 35.59 0.86
709 769 9.213777 CTTCCTGCCAGGGATAGTATAATATAA 57.786 37.037 11.68 0.00 35.59 0.98
710 770 9.569074 TTCCTGCCAGGGATAGTATAATATAAA 57.431 33.333 11.68 0.00 35.59 1.40
711 771 8.989131 TCCTGCCAGGGATAGTATAATATAAAC 58.011 37.037 11.68 0.00 35.59 2.01
797 857 4.451150 GCTCGCGTGACCCATCCA 62.451 66.667 13.13 0.00 0.00 3.41
834 916 1.003769 GCAGCGGAAAAGGAAAAGCG 61.004 55.000 0.00 0.00 0.00 4.68
945 1027 3.415087 GGGAGGCAGGTGCAGGAT 61.415 66.667 4.01 0.00 44.36 3.24
957 1049 2.408050 GTGCAGGATATACAGAAGGCG 58.592 52.381 0.00 0.00 0.00 5.52
958 1050 1.344438 TGCAGGATATACAGAAGGCGG 59.656 52.381 0.00 0.00 0.00 6.13
959 1051 1.941668 GCAGGATATACAGAAGGCGGC 60.942 57.143 0.00 0.00 0.00 6.53
1130 1223 2.902343 GGTAAGCGAGCATGCCCC 60.902 66.667 15.66 5.79 34.65 5.80
1268 1381 1.814527 CCGTCTCGGTTAGGAAGGG 59.185 63.158 0.00 0.00 42.73 3.95
1269 1382 0.682209 CCGTCTCGGTTAGGAAGGGA 60.682 60.000 0.00 0.00 42.73 4.20
1270 1383 1.400737 CGTCTCGGTTAGGAAGGGAT 58.599 55.000 0.00 0.00 0.00 3.85
1272 1385 2.553172 CGTCTCGGTTAGGAAGGGATAG 59.447 54.545 0.00 0.00 0.00 2.08
1273 1386 3.564264 GTCTCGGTTAGGAAGGGATAGT 58.436 50.000 0.00 0.00 0.00 2.12
1275 1388 2.628657 CTCGGTTAGGAAGGGATAGTGG 59.371 54.545 0.00 0.00 0.00 4.00
1278 1391 3.584294 GGTTAGGAAGGGATAGTGGCTA 58.416 50.000 0.00 0.00 0.00 3.93
1279 1392 3.579151 GGTTAGGAAGGGATAGTGGCTAG 59.421 52.174 0.00 0.00 0.00 3.42
1280 1393 4.224762 GTTAGGAAGGGATAGTGGCTAGT 58.775 47.826 0.00 0.00 0.00 2.57
1281 1394 5.392125 GTTAGGAAGGGATAGTGGCTAGTA 58.608 45.833 0.00 0.00 0.00 1.82
1282 1395 4.120946 AGGAAGGGATAGTGGCTAGTAG 57.879 50.000 0.00 0.00 0.00 2.57
1283 1396 2.563620 GGAAGGGATAGTGGCTAGTAGC 59.436 54.545 14.09 14.09 41.46 3.58
1284 1397 3.502356 GAAGGGATAGTGGCTAGTAGCT 58.498 50.000 21.20 4.91 41.99 3.32
1301 1468 5.418676 AGTAGCTTCTTCTTCTTCAGATGC 58.581 41.667 0.00 0.00 39.41 3.91
1327 1494 9.078990 CAAATCTACTCATAGTGGATAGTGGTA 57.921 37.037 6.38 0.00 44.23 3.25
1342 1509 1.214217 TGGTACCACAAACCAGACCA 58.786 50.000 11.60 0.00 42.10 4.02
1343 1510 1.142060 TGGTACCACAAACCAGACCAG 59.858 52.381 11.60 0.00 42.10 4.00
1344 1511 1.544759 GGTACCACAAACCAGACCAGG 60.545 57.143 7.15 0.00 36.96 4.45
1345 1512 0.768622 TACCACAAACCAGACCAGGG 59.231 55.000 0.00 0.00 0.00 4.45
1346 1513 1.286305 ACCACAAACCAGACCAGGGT 61.286 55.000 0.00 0.00 41.41 4.34
1347 1514 0.768622 CCACAAACCAGACCAGGGTA 59.231 55.000 0.00 0.00 37.77 3.69
1419 1586 2.216898 GACCAGTGCTGAATATCTGCC 58.783 52.381 0.02 0.00 40.10 4.85
1425 1592 4.213694 CAGTGCTGAATATCTGCCAAGATC 59.786 45.833 6.75 0.00 42.41 2.75
1431 1598 7.767659 TGCTGAATATCTGCCAAGATCATATAC 59.232 37.037 6.75 0.00 42.41 1.47
1433 1600 9.096160 CTGAATATCTGCCAAGATCATATACAC 57.904 37.037 0.00 0.00 42.41 2.90
1439 1606 5.614308 TGCCAAGATCATATACACCTCTTG 58.386 41.667 0.00 0.00 41.44 3.02
1458 1625 0.031178 GCCTGCACAAACTTGTCTGG 59.969 55.000 0.00 3.63 39.91 3.86
1475 1644 0.179092 TGGTGATCTGCTGATCTGCG 60.179 55.000 27.48 13.30 46.84 5.18
1476 1645 1.497223 GGTGATCTGCTGATCTGCGC 61.497 60.000 27.48 17.07 46.84 6.09
1488 1657 0.447801 ATCTGCGCAAACGAATGGAC 59.552 50.000 13.05 0.00 43.93 4.02
1494 1663 1.135972 CGCAAACGAATGGACAGAAGG 60.136 52.381 0.00 0.00 43.93 3.46
1495 1664 1.200020 GCAAACGAATGGACAGAAGGG 59.800 52.381 0.00 0.00 0.00 3.95
1496 1665 2.778299 CAAACGAATGGACAGAAGGGA 58.222 47.619 0.00 0.00 0.00 4.20
1502 1671 3.375299 CGAATGGACAGAAGGGATTGTTC 59.625 47.826 0.00 0.00 0.00 3.18
1509 1678 0.449388 GAAGGGATTGTTCGCTGCTG 59.551 55.000 0.00 0.00 43.78 4.41
1528 1697 3.496331 CTGGTTTCTTAGCCTGGGAAAA 58.504 45.455 0.00 0.00 32.00 2.29
1529 1698 3.227614 TGGTTTCTTAGCCTGGGAAAAC 58.772 45.455 0.00 0.00 37.23 2.43
1535 1704 1.616159 TAGCCTGGGAAAACAAGTGC 58.384 50.000 0.00 0.00 0.00 4.40
1598 1767 2.697761 GCTCGAGACACCCGCTGTA 61.698 63.158 18.75 0.00 31.03 2.74
1604 1773 2.007608 GAGACACCCGCTGTATTTTCC 58.992 52.381 0.00 0.00 31.03 3.13
1629 1801 1.308069 ACATCTGTCACCATTGCGGC 61.308 55.000 0.00 0.00 39.03 6.53
1630 1802 2.108514 ATCTGTCACCATTGCGGCG 61.109 57.895 0.51 0.51 39.03 6.46
1631 1803 3.803082 CTGTCACCATTGCGGCGG 61.803 66.667 9.78 0.00 39.03 6.13
1632 1804 4.634703 TGTCACCATTGCGGCGGT 62.635 61.111 9.78 0.00 39.03 5.68
1633 1805 2.435234 GTCACCATTGCGGCGGTA 60.435 61.111 9.78 0.00 39.03 4.02
1634 1806 2.125310 TCACCATTGCGGCGGTAG 60.125 61.111 9.78 0.00 39.03 3.18
1654 1826 3.507597 GGGGCACGAATTTGGTTTC 57.492 52.632 0.00 0.00 0.00 2.78
1671 1844 2.284754 TTCCAATTGGTAGCACAGCA 57.715 45.000 23.76 0.00 36.34 4.41
1685 1858 3.188048 AGCACAGCATTTTCTTCTTCTCG 59.812 43.478 0.00 0.00 0.00 4.04
1721 1972 4.307032 AGGCATGTTTTGTATCCTCTGT 57.693 40.909 0.00 0.00 0.00 3.41
1725 1976 6.041979 AGGCATGTTTTGTATCCTCTGTTTTT 59.958 34.615 0.00 0.00 0.00 1.94
1730 1981 9.912634 ATGTTTTGTATCCTCTGTTTTTATGTG 57.087 29.630 0.00 0.00 0.00 3.21
1753 2004 5.040635 GCATTTGGAAGACGACAAGAAAAA 58.959 37.500 0.00 0.00 0.00 1.94
1759 2010 4.348656 GAAGACGACAAGAAAAACCAACC 58.651 43.478 0.00 0.00 0.00 3.77
1766 2017 5.392165 CGACAAGAAAAACCAACCTGTGTTA 60.392 40.000 0.00 0.00 32.09 2.41
1770 2021 4.773149 AGAAAAACCAACCTGTGTTAACCA 59.227 37.500 2.48 0.00 32.09 3.67
1780 2031 2.808543 CTGTGTTAACCACTCTGCCTTC 59.191 50.000 2.48 0.00 44.81 3.46
1792 2043 5.486526 CACTCTGCCTTCTATTCTCTTTGT 58.513 41.667 0.00 0.00 0.00 2.83
1796 2047 5.702670 TCTGCCTTCTATTCTCTTTGTTGTG 59.297 40.000 0.00 0.00 0.00 3.33
1801 2052 7.148557 GCCTTCTATTCTCTTTGTTGTGTACTC 60.149 40.741 0.00 0.00 0.00 2.59
1825 2076 5.347342 CAGATAGACATCTTGAAGCGTCTT 58.653 41.667 18.00 9.33 39.62 3.01
1864 2115 2.216898 GACATAATGCAGCTGAGGGAC 58.783 52.381 20.43 0.00 0.00 4.46
1870 2121 2.268280 CAGCTGAGGGACAGGCAG 59.732 66.667 8.42 0.00 45.82 4.85
1897 2148 1.803519 CGAGAAGGTGCTCACGCTC 60.804 63.158 0.00 1.17 36.97 5.03
1903 2154 0.320247 AGGTGCTCACGCTCTTCAAG 60.320 55.000 0.00 0.00 36.97 3.02
1914 2165 3.309954 ACGCTCTTCAAGTCTCACAAAAC 59.690 43.478 0.00 0.00 0.00 2.43
1918 2169 1.305201 TCAAGTCTCACAAAACCGGC 58.695 50.000 0.00 0.00 0.00 6.13
1975 2226 2.438434 AATTTCGCCGGAGCCCTG 60.438 61.111 5.05 0.00 34.57 4.45
2016 2267 4.452733 GGAACCAGACGGCTCGGG 62.453 72.222 10.90 2.40 37.74 5.14
2111 2362 1.065928 GCCACCGACTCCAGATACG 59.934 63.158 0.00 0.00 0.00 3.06
2125 2376 6.145338 TCCAGATACGTCTATCAGGAAAAC 57.855 41.667 9.36 0.00 40.42 2.43
2126 2377 4.976731 CCAGATACGTCTATCAGGAAAACG 59.023 45.833 4.19 0.00 37.98 3.60
2127 2378 5.220989 CCAGATACGTCTATCAGGAAAACGA 60.221 44.000 4.19 0.00 37.98 3.85
2149 2400 0.473501 ATCTCATGGGGAGCCCTCTC 60.474 60.000 5.38 0.00 45.70 3.20
2171 2422 1.269166 GCTGTCGAAGGTGATGTACG 58.731 55.000 0.00 0.00 0.00 3.67
2176 2427 1.410737 CGAAGGTGATGTACGTGGCG 61.411 60.000 0.00 0.00 0.00 5.69
2239 2490 3.244976 GGCAAGGTGTGATGATTTTTCG 58.755 45.455 0.00 0.00 0.00 3.46
2257 2508 0.877649 CGACCGATCCAAGCATCCAG 60.878 60.000 0.00 0.00 0.00 3.86
2276 2527 5.428253 TCCAGGAGGTAATTGATTTCTTCG 58.572 41.667 0.00 0.00 35.89 3.79
2280 2531 5.045869 AGGAGGTAATTGATTTCTTCGTCCA 60.046 40.000 0.00 0.00 32.91 4.02
2364 2615 2.054453 GGCAATGGGTTCCCAGCTC 61.054 63.158 16.04 7.02 39.73 4.09
2440 2691 2.363680 CCTGATACTGAGGTCGCAGAAT 59.636 50.000 8.62 0.00 39.69 2.40
2533 2784 1.934463 CGGATTCGGGCAGATTTCG 59.066 57.895 0.00 0.00 0.00 3.46
2569 2820 2.676176 CGACATCAAGCTGACCATGTCT 60.676 50.000 18.28 0.00 33.84 3.41
2570 2821 3.429410 CGACATCAAGCTGACCATGTCTA 60.429 47.826 18.28 0.00 33.84 2.59
2575 2826 0.972983 AGCTGACCATGTCTACGGCT 60.973 55.000 0.00 0.00 33.15 5.52
2581 2832 1.369091 CCATGTCTACGGCTTGGCAC 61.369 60.000 0.00 0.00 0.00 5.01
2596 2847 2.795973 CACGGACCGTCTGCGATA 59.204 61.111 18.72 0.00 38.32 2.92
2620 2871 2.668550 AAGAGCAAACCGACCGCC 60.669 61.111 0.00 0.00 0.00 6.13
2713 2964 1.743252 GAACCCGAGGCAGCTGAAG 60.743 63.158 20.43 4.49 0.00 3.02
2719 2970 4.711949 AGGCAGCTGAAGTGGGCG 62.712 66.667 20.43 0.00 0.00 6.13
2827 3078 2.294512 GCTGGAAGGGTTTCTGAACTTG 59.705 50.000 0.00 0.00 36.03 3.16
2845 3096 0.841961 TGCATCTAGGCCAGAATGCT 59.158 50.000 26.52 1.21 38.03 3.79
2878 3129 1.880027 GGTGTCATGTTCAACCTGGAC 59.120 52.381 0.00 0.00 0.00 4.02
2924 3175 0.947660 GTTCCGGTCGAGTTGGTTCC 60.948 60.000 0.00 0.00 0.00 3.62
2944 3195 1.294780 GTGAGGCCTGAGTGAGTGG 59.705 63.158 12.00 0.00 0.00 4.00
2954 3205 2.614057 CTGAGTGAGTGGTTTTGGTGTC 59.386 50.000 0.00 0.00 0.00 3.67
2956 3207 2.354821 GAGTGAGTGGTTTTGGTGTCAC 59.645 50.000 0.00 0.00 35.57 3.67
3072 3323 7.439157 TGTATGATGCTATGATAGGTTTTGC 57.561 36.000 1.11 0.00 0.00 3.68
3081 3332 9.219603 TGCTATGATAGGTTTTGCTATCATTAC 57.780 33.333 7.88 1.40 45.58 1.89
3114 3366 6.849085 ATGCTATGATTGGTTTTGTTACCA 57.151 33.333 0.00 0.00 46.23 3.25
3154 3406 2.113860 TTCTTATGCTGCCCTGTGAC 57.886 50.000 0.00 0.00 0.00 3.67
3186 3438 9.952030 TTCAGAAACAGATATGTGTACCATTTA 57.048 29.630 5.85 0.00 34.86 1.40
3212 3465 6.770303 TGTATTTGATGAGTCAACCTGAAACA 59.230 34.615 0.00 0.00 43.72 2.83
3215 3468 5.233083 TGATGAGTCAACCTGAAACAGAT 57.767 39.130 0.00 0.00 32.44 2.90
3218 3471 8.078060 TGATGAGTCAACCTGAAACAGATATA 57.922 34.615 0.00 0.00 32.44 0.86
3219 3472 8.708378 TGATGAGTCAACCTGAAACAGATATAT 58.292 33.333 0.00 0.00 32.44 0.86
3220 3473 8.899427 ATGAGTCAACCTGAAACAGATATATG 57.101 34.615 0.00 0.00 32.44 1.78
3221 3474 6.763135 TGAGTCAACCTGAAACAGATATATGC 59.237 38.462 0.00 0.00 32.44 3.14
3265 3532 3.657398 TGATCCATTCCATGCTCAACT 57.343 42.857 0.00 0.00 0.00 3.16
3307 3574 7.330720 AGTTACAAGTTCGTCGTAAAGATTC 57.669 36.000 0.00 0.00 0.00 2.52
3324 3591 0.685097 TTCGGGCCTATAGTGCATCC 59.315 55.000 0.84 6.87 0.00 3.51
3351 3618 1.279846 TCATCTGCAGCAGAATCCACA 59.720 47.619 28.78 4.56 44.04 4.17
3408 3678 3.462205 ACCAAGAAAAGGGGTGTTCTACT 59.538 43.478 0.00 0.00 32.90 2.57
3428 3699 4.111916 ACTTTTGCACAACCAAAGAATCG 58.888 39.130 13.40 0.00 36.21 3.34
3479 3750 2.032377 TGCCTGCGAAGTTCTTTTTACG 60.032 45.455 0.56 0.00 0.00 3.18
3481 3752 2.546789 CCTGCGAAGTTCTTTTTACGGT 59.453 45.455 0.56 0.00 0.00 4.83
3491 3762 0.320946 TTTTTACGGTGGGGAGCTCG 60.321 55.000 7.83 0.00 0.00 5.03
3530 3801 2.682494 TACGGAGTCCACAGCCCC 60.682 66.667 10.49 0.00 43.93 5.80
3532 3803 4.087892 CGGAGTCCACAGCCCCAG 62.088 72.222 10.49 0.00 0.00 4.45
3725 3996 1.739562 GAAGCTGAGCTGGTCACGG 60.740 63.158 8.16 0.00 39.62 4.94
3770 4041 1.376942 CCAGAGGCAGCTGAACAGG 60.377 63.158 20.43 9.86 38.14 4.00
3780 4051 1.899814 AGCTGAACAGGTCCGTTATCA 59.100 47.619 0.47 0.00 33.18 2.15
3858 4129 6.279513 TGTTTAATTAGCACTGGGAATTGG 57.720 37.500 0.00 0.00 0.00 3.16
3877 4148 2.849943 TGGGGAACTATGGTAGCACAAT 59.150 45.455 0.00 0.00 0.00 2.71
3886 4157 9.542462 GAACTATGGTAGCACAATAGAAATACA 57.458 33.333 14.13 0.00 0.00 2.29
3913 4184 6.352516 AGAGGTGGAATGATTCATCAGTTAC 58.647 40.000 7.56 0.00 40.64 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.112725 TCTACATACATCCATTTCAATGACAAG 57.887 33.333 0.81 0.00 38.70 3.16
2 3 9.631257 ATCTACATACATCCATTTCAATGACAA 57.369 29.630 0.81 0.00 38.70 3.18
3 4 9.059260 CATCTACATACATCCATTTCAATGACA 57.941 33.333 0.81 0.00 38.70 3.58
4 5 9.060347 ACATCTACATACATCCATTTCAATGAC 57.940 33.333 0.81 0.00 38.70 3.06
25 26 9.717942 GGATGCATCTAGAACTAAAATACATCT 57.282 33.333 25.28 0.00 31.89 2.90
26 27 9.494271 TGGATGCATCTAGAACTAAAATACATC 57.506 33.333 25.28 3.59 0.00 3.06
28 29 9.851686 AATGGATGCATCTAGAACTAAAATACA 57.148 29.630 25.28 10.32 0.00 2.29
32 33 9.241919 TGAAAATGGATGCATCTAGAACTAAAA 57.758 29.630 25.28 0.68 0.00 1.52
33 34 8.806429 TGAAAATGGATGCATCTAGAACTAAA 57.194 30.769 25.28 2.10 0.00 1.85
34 35 8.985315 ATGAAAATGGATGCATCTAGAACTAA 57.015 30.769 25.28 6.62 0.00 2.24
35 36 7.663081 GGATGAAAATGGATGCATCTAGAACTA 59.337 37.037 25.28 8.78 37.77 2.24
36 37 6.489361 GGATGAAAATGGATGCATCTAGAACT 59.511 38.462 25.28 6.55 37.77 3.01
37 38 6.263842 TGGATGAAAATGGATGCATCTAGAAC 59.736 38.462 25.28 9.59 37.77 3.01
38 39 6.367161 TGGATGAAAATGGATGCATCTAGAA 58.633 36.000 25.28 10.04 37.77 2.10
39 40 5.944135 TGGATGAAAATGGATGCATCTAGA 58.056 37.500 25.28 10.86 37.77 2.43
40 41 6.835819 ATGGATGAAAATGGATGCATCTAG 57.164 37.500 25.28 0.00 37.77 2.43
41 42 7.606135 AAATGGATGAAAATGGATGCATCTA 57.394 32.000 25.28 20.79 37.77 1.98
42 43 6.494666 AAATGGATGAAAATGGATGCATCT 57.505 33.333 25.28 5.84 37.77 2.90
43 44 6.764085 TCAAAATGGATGAAAATGGATGCATC 59.236 34.615 18.81 18.81 37.11 3.91
44 45 6.654959 TCAAAATGGATGAAAATGGATGCAT 58.345 32.000 0.00 0.00 32.53 3.96
45 46 6.051179 TCAAAATGGATGAAAATGGATGCA 57.949 33.333 0.00 0.00 0.00 3.96
46 47 6.954944 CATCAAAATGGATGAAAATGGATGC 58.045 36.000 0.00 0.00 46.00 3.91
57 58 7.433131 CGGAATTACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
58 59 7.416664 CCGGAATTACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
59 60 6.127758 CCGGAATTACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
60 61 6.035843 CCGGAATTACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
61 62 6.747280 GTCCGGAATTACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
62 63 6.403200 CGTCCGGAATTACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
63 64 5.106869 CGTCCGGAATTACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
64 65 4.390603 CGTCCGGAATTACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
65 66 3.930229 CGTCCGGAATTACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
66 67 3.517602 CGTCCGGAATTACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
67 68 2.864343 CCGTCCGGAATTACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
68 69 2.498481 TCCGTCCGGAATTACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
69 70 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
70 71 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
71 72 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
72 73 1.206371 ACCTCCGTCCGGAATTACTTG 59.794 52.381 5.23 0.00 44.66 3.16
73 74 1.565067 ACCTCCGTCCGGAATTACTT 58.435 50.000 5.23 0.00 44.66 2.24
74 75 1.206371 CAACCTCCGTCCGGAATTACT 59.794 52.381 5.23 0.00 44.66 2.24
75 76 1.066645 ACAACCTCCGTCCGGAATTAC 60.067 52.381 5.23 0.00 44.66 1.89
76 77 1.269012 ACAACCTCCGTCCGGAATTA 58.731 50.000 5.23 0.00 44.66 1.40
77 78 1.269012 TACAACCTCCGTCCGGAATT 58.731 50.000 5.23 4.64 44.66 2.17
78 79 1.138266 CATACAACCTCCGTCCGGAAT 59.862 52.381 5.23 0.00 44.66 3.01
79 80 0.533491 CATACAACCTCCGTCCGGAA 59.467 55.000 5.23 0.00 44.66 4.30
80 81 0.612732 ACATACAACCTCCGTCCGGA 60.613 55.000 0.00 0.00 42.90 5.14
81 82 0.179119 GACATACAACCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
82 83 0.528924 TGACATACAACCTCCGTCCG 59.471 55.000 0.00 0.00 0.00 4.79
83 84 1.274167 TGTGACATACAACCTCCGTCC 59.726 52.381 0.00 0.00 36.06 4.79
84 85 2.736144 TGTGACATACAACCTCCGTC 57.264 50.000 0.00 0.00 36.06 4.79
97 98 9.959749 GAATCCAACTAAATAAGTTTTGTGACA 57.040 29.630 0.00 0.00 46.61 3.58
179 180 6.290294 AGCTTTGGCATTTGATTTCACTAT 57.710 33.333 0.00 0.00 41.70 2.12
184 185 4.152938 GGTCAAGCTTTGGCATTTGATTTC 59.847 41.667 0.00 0.00 41.70 2.17
201 202 4.273235 GTCCTTTTTGCATTTTGGGTCAAG 59.727 41.667 0.00 0.00 0.00 3.02
213 214 7.361713 CGTCAGGATTTATTAGTCCTTTTTGCA 60.362 37.037 0.00 0.00 42.09 4.08
214 215 6.967199 CGTCAGGATTTATTAGTCCTTTTTGC 59.033 38.462 0.00 0.00 42.09 3.68
215 216 7.335924 TCCGTCAGGATTTATTAGTCCTTTTTG 59.664 37.037 0.00 0.00 42.09 2.44
216 217 7.399634 TCCGTCAGGATTTATTAGTCCTTTTT 58.600 34.615 0.00 0.00 42.09 1.94
238 240 4.142293 GGGTACTTCTTTGTACTACCTCCG 60.142 50.000 5.50 0.00 41.64 4.63
245 247 2.830321 CGGAGGGGTACTTCTTTGTACT 59.170 50.000 0.00 0.00 41.64 2.73
277 280 8.635328 TGACACTACTGTACAAAAACTCTCATA 58.365 33.333 0.00 0.00 0.00 2.15
279 282 6.869695 TGACACTACTGTACAAAAACTCTCA 58.130 36.000 0.00 0.00 0.00 3.27
281 284 8.556213 TTTTGACACTACTGTACAAAAACTCT 57.444 30.769 10.02 0.00 37.96 3.24
288 291 4.871557 AGCGTTTTTGACACTACTGTACAA 59.128 37.500 0.00 0.00 0.00 2.41
289 292 4.435425 AGCGTTTTTGACACTACTGTACA 58.565 39.130 0.00 0.00 0.00 2.90
290 293 4.743644 AGAGCGTTTTTGACACTACTGTAC 59.256 41.667 0.00 0.00 0.00 2.90
291 294 4.940463 AGAGCGTTTTTGACACTACTGTA 58.060 39.130 0.00 0.00 0.00 2.74
293 296 4.795970 AAGAGCGTTTTTGACACTACTG 57.204 40.909 0.00 0.00 0.00 2.74
294 297 8.773404 AATATAAGAGCGTTTTTGACACTACT 57.227 30.769 0.00 0.00 0.00 2.57
295 298 9.474249 GAAATATAAGAGCGTTTTTGACACTAC 57.526 33.333 0.00 0.00 0.00 2.73
298 301 8.788813 CATGAAATATAAGAGCGTTTTTGACAC 58.211 33.333 0.00 0.00 0.00 3.67
299 302 8.511321 ACATGAAATATAAGAGCGTTTTTGACA 58.489 29.630 0.00 0.00 0.00 3.58
300 303 8.895932 ACATGAAATATAAGAGCGTTTTTGAC 57.104 30.769 0.00 0.00 0.00 3.18
314 317 9.817809 AGAGCGTCTTCTTTTACATGAAATATA 57.182 29.630 0.00 0.00 0.00 0.86
315 318 8.723942 AGAGCGTCTTCTTTTACATGAAATAT 57.276 30.769 0.00 0.00 0.00 1.28
316 319 8.547967 AAGAGCGTCTTCTTTTACATGAAATA 57.452 30.769 0.00 0.00 33.74 1.40
319 322 9.817809 ATATAAGAGCGTCTTCTTTTACATGAA 57.182 29.630 0.00 0.00 37.89 2.57
320 323 9.817809 AATATAAGAGCGTCTTCTTTTACATGA 57.182 29.630 0.00 0.00 37.89 3.07
328 331 9.817809 TGTTTCATAATATAAGAGCGTCTTCTT 57.182 29.630 3.94 4.38 37.89 2.52
330 333 9.464714 TCTGTTTCATAATATAAGAGCGTCTTC 57.535 33.333 3.94 0.00 37.89 2.87
332 335 8.085296 CCTCTGTTTCATAATATAAGAGCGTCT 58.915 37.037 0.00 0.00 0.00 4.18
333 336 7.329717 CCCTCTGTTTCATAATATAAGAGCGTC 59.670 40.741 0.00 0.00 0.00 5.19
334 337 7.015292 TCCCTCTGTTTCATAATATAAGAGCGT 59.985 37.037 0.00 0.00 0.00 5.07
335 338 7.378966 TCCCTCTGTTTCATAATATAAGAGCG 58.621 38.462 0.00 0.00 0.00 5.03
336 339 8.371699 ACTCCCTCTGTTTCATAATATAAGAGC 58.628 37.037 0.00 0.00 0.00 4.09
347 407 3.775316 ACCGAATACTCCCTCTGTTTCAT 59.225 43.478 0.00 0.00 0.00 2.57
348 408 3.170717 ACCGAATACTCCCTCTGTTTCA 58.829 45.455 0.00 0.00 0.00 2.69
350 410 5.189145 ACATAACCGAATACTCCCTCTGTTT 59.811 40.000 0.00 0.00 0.00 2.83
366 426 7.438459 TGAAATTTTAACAAACCCACATAACCG 59.562 33.333 0.00 0.00 0.00 4.44
372 432 5.105473 TCGGTGAAATTTTAACAAACCCACA 60.105 36.000 0.00 0.00 0.00 4.17
377 437 8.974408 AGCTATTTCGGTGAAATTTTAACAAAC 58.026 29.630 9.77 0.00 41.64 2.93
381 441 6.034577 GCCAGCTATTTCGGTGAAATTTTAAC 59.965 38.462 9.77 0.00 41.64 2.01
394 454 2.203800 TACACGAGCCAGCTATTTCG 57.796 50.000 10.30 10.30 38.88 3.46
425 485 0.672401 TTCACGAACGGAGGGATTGC 60.672 55.000 0.00 0.00 0.00 3.56
426 486 2.024176 ATTCACGAACGGAGGGATTG 57.976 50.000 0.00 0.00 0.00 2.67
427 487 2.498481 TGTATTCACGAACGGAGGGATT 59.502 45.455 0.00 0.00 0.00 3.01
428 488 2.104967 TGTATTCACGAACGGAGGGAT 58.895 47.619 0.00 0.00 0.00 3.85
429 489 1.548081 TGTATTCACGAACGGAGGGA 58.452 50.000 0.00 0.00 0.00 4.20
430 490 2.268298 CTTGTATTCACGAACGGAGGG 58.732 52.381 0.00 0.00 0.00 4.30
431 491 2.921754 GACTTGTATTCACGAACGGAGG 59.078 50.000 0.00 0.00 0.00 4.30
432 492 3.571571 TGACTTGTATTCACGAACGGAG 58.428 45.455 0.00 0.00 0.00 4.63
433 493 3.646611 TGACTTGTATTCACGAACGGA 57.353 42.857 0.00 0.00 0.00 4.69
434 494 4.151689 ACAATGACTTGTATTCACGAACGG 59.848 41.667 0.00 0.00 43.77 4.44
435 495 5.264060 ACAATGACTTGTATTCACGAACG 57.736 39.130 0.00 0.00 43.77 3.95
436 496 7.541091 TCTCTACAATGACTTGTATTCACGAAC 59.459 37.037 0.00 0.00 44.65 3.95
437 497 7.599171 TCTCTACAATGACTTGTATTCACGAA 58.401 34.615 0.00 0.00 44.65 3.85
438 498 7.094334 ACTCTCTACAATGACTTGTATTCACGA 60.094 37.037 0.00 0.00 44.65 4.35
439 499 7.030165 ACTCTCTACAATGACTTGTATTCACG 58.970 38.462 0.00 0.00 44.65 4.35
440 500 7.489757 GGACTCTCTACAATGACTTGTATTCAC 59.510 40.741 0.00 0.00 44.65 3.18
441 501 7.178451 TGGACTCTCTACAATGACTTGTATTCA 59.822 37.037 0.00 0.00 44.65 2.57
442 502 7.548097 TGGACTCTCTACAATGACTTGTATTC 58.452 38.462 0.00 0.00 44.65 1.75
443 503 7.482169 TGGACTCTCTACAATGACTTGTATT 57.518 36.000 0.00 0.00 44.65 1.89
444 504 7.482169 TTGGACTCTCTACAATGACTTGTAT 57.518 36.000 0.00 0.00 44.65 2.29
445 505 6.911250 TTGGACTCTCTACAATGACTTGTA 57.089 37.500 0.00 0.00 43.77 2.41
447 507 7.440556 CCATATTGGACTCTCTACAATGACTTG 59.559 40.741 0.00 0.00 40.96 3.16
448 508 7.126421 ACCATATTGGACTCTCTACAATGACTT 59.874 37.037 0.00 0.00 40.96 3.01
449 509 6.613271 ACCATATTGGACTCTCTACAATGACT 59.387 38.462 0.00 0.00 40.96 3.41
450 510 6.821388 ACCATATTGGACTCTCTACAATGAC 58.179 40.000 0.00 0.00 40.96 3.06
451 511 6.841229 AGACCATATTGGACTCTCTACAATGA 59.159 38.462 0.00 0.00 38.06 2.57
452 512 7.060383 AGACCATATTGGACTCTCTACAATG 57.940 40.000 0.00 0.00 38.06 2.82
453 513 7.785028 TGTAGACCATATTGGACTCTCTACAAT 59.215 37.037 16.34 0.00 43.43 2.71
454 514 7.123383 TGTAGACCATATTGGACTCTCTACAA 58.877 38.462 16.34 6.35 43.43 2.41
455 515 6.669631 TGTAGACCATATTGGACTCTCTACA 58.330 40.000 15.38 15.38 43.81 2.74
456 516 7.768807 ATGTAGACCATATTGGACTCTCTAC 57.231 40.000 11.99 11.99 41.43 2.59
457 517 7.606839 CGTATGTAGACCATATTGGACTCTCTA 59.393 40.741 0.00 0.00 41.43 2.43
458 518 6.431543 CGTATGTAGACCATATTGGACTCTCT 59.568 42.308 0.00 0.00 41.43 3.10
459 519 6.349445 CCGTATGTAGACCATATTGGACTCTC 60.349 46.154 0.00 0.00 41.43 3.20
460 520 5.477291 CCGTATGTAGACCATATTGGACTCT 59.523 44.000 0.00 0.00 41.43 3.24
461 521 5.475909 TCCGTATGTAGACCATATTGGACTC 59.524 44.000 0.00 0.00 41.43 3.36
462 522 5.391256 TCCGTATGTAGACCATATTGGACT 58.609 41.667 0.00 2.10 44.35 3.85
463 523 5.710984 CTCCGTATGTAGACCATATTGGAC 58.289 45.833 0.00 0.00 40.96 4.02
464 524 4.219944 GCTCCGTATGTAGACCATATTGGA 59.780 45.833 0.00 0.00 40.96 3.53
465 525 4.021456 TGCTCCGTATGTAGACCATATTGG 60.021 45.833 0.00 0.00 45.02 3.16
466 526 5.134202 TGCTCCGTATGTAGACCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
467 527 5.801531 TTGCTCCGTATGTAGACCATATT 57.198 39.130 0.00 0.00 38.29 1.28
468 528 5.801531 TTTGCTCCGTATGTAGACCATAT 57.198 39.130 0.00 0.00 38.29 1.78
469 529 5.601583 TTTTGCTCCGTATGTAGACCATA 57.398 39.130 0.00 0.00 34.86 2.74
470 530 4.481368 TTTTGCTCCGTATGTAGACCAT 57.519 40.909 0.00 0.00 37.58 3.55
471 531 3.965379 TTTTGCTCCGTATGTAGACCA 57.035 42.857 0.00 0.00 0.00 4.02
512 572 9.022915 CGGATGTACGTATGTAGACATTTTTAA 57.977 33.333 0.00 0.00 37.76 1.52
513 573 8.190122 ACGGATGTACGTATGTAGACATTTTTA 58.810 33.333 0.00 0.00 46.58 1.52
514 574 7.037438 ACGGATGTACGTATGTAGACATTTTT 58.963 34.615 0.00 0.00 46.58 1.94
515 575 6.567050 ACGGATGTACGTATGTAGACATTTT 58.433 36.000 0.00 0.00 46.58 1.82
516 576 6.140303 ACGGATGTACGTATGTAGACATTT 57.860 37.500 0.00 0.00 46.58 2.32
517 577 5.762825 ACGGATGTACGTATGTAGACATT 57.237 39.130 0.00 0.00 46.58 2.71
530 590 0.040958 CGGGCTACGTACGGATGTAC 60.041 60.000 21.06 4.40 46.09 2.90
531 591 2.320215 CGGGCTACGTACGGATGTA 58.680 57.895 21.06 0.00 37.93 2.29
532 592 3.113745 CGGGCTACGTACGGATGT 58.886 61.111 21.06 0.00 37.93 3.06
542 602 7.848223 TTTTAGAGGTTTTAATACGGGCTAC 57.152 36.000 0.00 0.00 0.00 3.58
564 624 6.653740 CCCCGTTTCTAGATACAAGTCTTTTT 59.346 38.462 12.92 0.00 0.00 1.94
565 625 6.171213 CCCCGTTTCTAGATACAAGTCTTTT 58.829 40.000 12.92 0.00 0.00 2.27
566 626 5.338137 CCCCCGTTTCTAGATACAAGTCTTT 60.338 44.000 12.92 0.00 0.00 2.52
567 627 4.161754 CCCCCGTTTCTAGATACAAGTCTT 59.838 45.833 12.92 0.00 0.00 3.01
568 628 3.705072 CCCCCGTTTCTAGATACAAGTCT 59.295 47.826 12.92 0.00 0.00 3.24
569 629 3.703052 TCCCCCGTTTCTAGATACAAGTC 59.297 47.826 12.92 0.00 0.00 3.01
570 630 3.716431 TCCCCCGTTTCTAGATACAAGT 58.284 45.455 12.92 0.00 0.00 3.16
571 631 4.161754 ACTTCCCCCGTTTCTAGATACAAG 59.838 45.833 12.92 10.20 0.00 3.16
572 632 4.098894 ACTTCCCCCGTTTCTAGATACAA 58.901 43.478 12.92 0.00 0.00 2.41
573 633 3.716431 ACTTCCCCCGTTTCTAGATACA 58.284 45.455 12.92 0.00 0.00 2.29
574 634 6.041296 TGAATACTTCCCCCGTTTCTAGATAC 59.959 42.308 3.43 3.43 0.00 2.24
575 635 6.138263 TGAATACTTCCCCCGTTTCTAGATA 58.862 40.000 0.00 0.00 0.00 1.98
576 636 4.966805 TGAATACTTCCCCCGTTTCTAGAT 59.033 41.667 0.00 0.00 0.00 1.98
577 637 4.355549 TGAATACTTCCCCCGTTTCTAGA 58.644 43.478 0.00 0.00 0.00 2.43
578 638 4.748277 TGAATACTTCCCCCGTTTCTAG 57.252 45.455 0.00 0.00 0.00 2.43
579 639 4.286549 TGTTGAATACTTCCCCCGTTTCTA 59.713 41.667 0.00 0.00 0.00 2.10
580 640 3.073356 TGTTGAATACTTCCCCCGTTTCT 59.927 43.478 0.00 0.00 0.00 2.52
581 641 3.414269 TGTTGAATACTTCCCCCGTTTC 58.586 45.455 0.00 0.00 0.00 2.78
582 642 3.512219 TGTTGAATACTTCCCCCGTTT 57.488 42.857 0.00 0.00 0.00 3.60
583 643 3.418047 CTTGTTGAATACTTCCCCCGTT 58.582 45.455 0.00 0.00 0.00 4.44
584 644 2.878526 GCTTGTTGAATACTTCCCCCGT 60.879 50.000 0.00 0.00 0.00 5.28
585 645 1.743394 GCTTGTTGAATACTTCCCCCG 59.257 52.381 0.00 0.00 0.00 5.73
586 646 1.743394 CGCTTGTTGAATACTTCCCCC 59.257 52.381 0.00 0.00 0.00 5.40
587 647 1.132453 GCGCTTGTTGAATACTTCCCC 59.868 52.381 0.00 0.00 0.00 4.81
588 648 2.084546 AGCGCTTGTTGAATACTTCCC 58.915 47.619 2.64 0.00 0.00 3.97
589 649 3.003480 AGAGCGCTTGTTGAATACTTCC 58.997 45.455 13.26 0.00 0.00 3.46
590 650 3.241804 CGAGAGCGCTTGTTGAATACTTC 60.242 47.826 13.26 0.00 0.00 3.01
591 651 2.668457 CGAGAGCGCTTGTTGAATACTT 59.332 45.455 13.26 0.00 0.00 2.24
592 652 2.263077 CGAGAGCGCTTGTTGAATACT 58.737 47.619 13.26 0.00 0.00 2.12
603 663 1.871676 TGATACGAATACGAGAGCGCT 59.128 47.619 11.27 11.27 42.48 5.92
612 672 6.504398 TGTGAGGAGTCAATGATACGAATAC 58.496 40.000 0.00 0.00 33.27 1.89
616 676 5.400066 TTTGTGAGGAGTCAATGATACGA 57.600 39.130 0.00 0.00 33.27 3.43
617 677 5.163854 GGTTTTGTGAGGAGTCAATGATACG 60.164 44.000 0.00 0.00 33.27 3.06
618 678 5.940470 AGGTTTTGTGAGGAGTCAATGATAC 59.060 40.000 0.00 0.00 33.27 2.24
619 679 6.126863 AGGTTTTGTGAGGAGTCAATGATA 57.873 37.500 0.00 0.00 33.27 2.15
620 680 4.990526 AGGTTTTGTGAGGAGTCAATGAT 58.009 39.130 0.00 0.00 33.27 2.45
621 681 4.389374 GAGGTTTTGTGAGGAGTCAATGA 58.611 43.478 0.00 0.00 33.27 2.57
622 682 3.503748 GGAGGTTTTGTGAGGAGTCAATG 59.496 47.826 0.00 0.00 33.27 2.82
623 683 3.395941 AGGAGGTTTTGTGAGGAGTCAAT 59.604 43.478 0.00 0.00 33.27 2.57
633 693 2.654863 ACAGGTTCAGGAGGTTTTGTG 58.345 47.619 0.00 0.00 0.00 3.33
661 721 9.912634 GGAAGAACACATTTTTGAATTCTATGA 57.087 29.630 7.05 0.00 0.00 2.15
672 732 3.070015 CCTGGCAGGAAGAACACATTTTT 59.930 43.478 29.96 0.00 37.67 1.94
678 738 0.329596 ATCCCTGGCAGGAAGAACAC 59.670 55.000 34.84 0.00 40.04 3.32
683 743 7.682787 ATATTATACTATCCCTGGCAGGAAG 57.317 40.000 34.84 26.96 40.04 3.46
703 763 9.206870 CAGCATCAACACCTTTTTGTTTATATT 57.793 29.630 0.00 0.00 37.62 1.28
704 764 8.584157 TCAGCATCAACACCTTTTTGTTTATAT 58.416 29.630 0.00 0.00 37.62 0.86
705 765 7.946207 TCAGCATCAACACCTTTTTGTTTATA 58.054 30.769 0.00 0.00 37.62 0.98
706 766 6.815089 TCAGCATCAACACCTTTTTGTTTAT 58.185 32.000 0.00 0.00 37.62 1.40
707 767 6.214191 TCAGCATCAACACCTTTTTGTTTA 57.786 33.333 0.00 0.00 37.62 2.01
708 768 5.083533 TCAGCATCAACACCTTTTTGTTT 57.916 34.783 0.00 0.00 37.62 2.83
709 769 4.734398 TCAGCATCAACACCTTTTTGTT 57.266 36.364 0.00 0.00 40.46 2.83
710 770 4.685924 CTTCAGCATCAACACCTTTTTGT 58.314 39.130 0.00 0.00 0.00 2.83
711 771 3.492011 GCTTCAGCATCAACACCTTTTTG 59.508 43.478 0.00 0.00 41.59 2.44
717 777 0.895100 TGGGCTTCAGCATCAACACC 60.895 55.000 0.30 0.00 44.36 4.16
796 856 3.248630 TTTCGCCTCGCCGCTTTTG 62.249 57.895 0.00 0.00 0.00 2.44
797 857 2.966309 CTTTCGCCTCGCCGCTTTT 61.966 57.895 0.00 0.00 0.00 2.27
936 1018 2.772287 GCCTTCTGTATATCCTGCACC 58.228 52.381 0.00 0.00 0.00 5.01
945 1027 2.420043 GCCGCCGCCTTCTGTATA 59.580 61.111 0.00 0.00 0.00 1.47
989 1081 2.174319 GCGTCCATCCTTTCCGCTC 61.174 63.158 0.00 0.00 41.06 5.03
992 1084 2.890474 CCGCGTCCATCCTTTCCG 60.890 66.667 4.92 0.00 0.00 4.30
1160 1253 1.313091 GGCCACAAACCCTCGGAATC 61.313 60.000 0.00 0.00 0.00 2.52
1266 1379 3.502356 AGAAGCTACTAGCCACTATCCC 58.498 50.000 4.32 0.00 43.77 3.85
1268 1381 6.264518 AGAAGAAGAAGCTACTAGCCACTATC 59.735 42.308 4.32 5.03 43.77 2.08
1269 1382 6.133356 AGAAGAAGAAGCTACTAGCCACTAT 58.867 40.000 4.32 0.00 43.77 2.12
1270 1383 5.511363 AGAAGAAGAAGCTACTAGCCACTA 58.489 41.667 4.32 0.00 43.77 2.74
1272 1385 4.729227 AGAAGAAGAAGCTACTAGCCAC 57.271 45.455 4.32 0.00 43.77 5.01
1273 1386 4.772624 TGAAGAAGAAGAAGCTACTAGCCA 59.227 41.667 4.32 0.00 43.77 4.75
1275 1388 6.202516 TCTGAAGAAGAAGAAGCTACTAGC 57.797 41.667 0.00 0.00 34.72 3.42
1278 1391 5.046735 TGCATCTGAAGAAGAAGAAGCTACT 60.047 40.000 0.00 0.00 38.79 2.57
1279 1392 5.174395 TGCATCTGAAGAAGAAGAAGCTAC 58.826 41.667 0.00 0.00 38.79 3.58
1280 1393 5.411831 TGCATCTGAAGAAGAAGAAGCTA 57.588 39.130 0.00 0.00 38.79 3.32
1281 1394 4.283363 TGCATCTGAAGAAGAAGAAGCT 57.717 40.909 0.00 0.00 38.79 3.74
1282 1395 5.368256 TTTGCATCTGAAGAAGAAGAAGC 57.632 39.130 0.00 0.00 38.79 3.86
1283 1396 7.380431 AGATTTGCATCTGAAGAAGAAGAAG 57.620 36.000 0.00 0.00 38.44 2.85
1284 1397 8.099537 AGTAGATTTGCATCTGAAGAAGAAGAA 58.900 33.333 0.00 0.00 40.28 2.52
1301 1468 7.957002 ACCACTATCCACTATGAGTAGATTTG 58.043 38.462 0.00 0.00 29.64 2.32
1327 1494 1.286305 ACCCTGGTCTGGTTTGTGGT 61.286 55.000 0.00 0.00 29.75 4.16
1339 1506 3.306613 GCAGGTTATCTACTACCCTGGT 58.693 50.000 6.17 0.00 42.37 4.00
1340 1507 3.305720 TGCAGGTTATCTACTACCCTGG 58.694 50.000 6.17 0.00 42.37 4.45
1341 1508 5.353394 TTTGCAGGTTATCTACTACCCTG 57.647 43.478 0.00 0.00 44.43 4.45
1342 1509 4.409247 CCTTTGCAGGTTATCTACTACCCT 59.591 45.833 0.00 0.00 35.06 4.34
1343 1510 4.407945 TCCTTTGCAGGTTATCTACTACCC 59.592 45.833 0.00 0.00 41.69 3.69
1344 1511 5.453480 CCTCCTTTGCAGGTTATCTACTACC 60.453 48.000 0.00 0.00 41.69 3.18
1345 1512 5.602628 CCTCCTTTGCAGGTTATCTACTAC 58.397 45.833 0.00 0.00 41.69 2.73
1346 1513 4.101119 GCCTCCTTTGCAGGTTATCTACTA 59.899 45.833 0.00 0.00 41.69 1.82
1347 1514 3.118223 GCCTCCTTTGCAGGTTATCTACT 60.118 47.826 0.00 0.00 41.69 2.57
1396 1563 1.202580 AGATATTCAGCACTGGTCGGC 60.203 52.381 0.00 0.00 0.00 5.54
1405 1572 4.426736 TGATCTTGGCAGATATTCAGCA 57.573 40.909 0.00 0.00 40.14 4.41
1406 1573 7.767659 TGTATATGATCTTGGCAGATATTCAGC 59.232 37.037 0.00 0.00 40.14 4.26
1419 1586 5.699915 CAGGCAAGAGGTGTATATGATCTTG 59.300 44.000 8.50 8.50 46.12 3.02
1425 1592 2.874701 GTGCAGGCAAGAGGTGTATATG 59.125 50.000 0.00 0.00 0.00 1.78
1431 1598 0.031178 GTTTGTGCAGGCAAGAGGTG 59.969 55.000 0.00 0.00 0.00 4.00
1433 1600 1.035139 AAGTTTGTGCAGGCAAGAGG 58.965 50.000 0.00 0.00 0.00 3.69
1439 1606 0.031178 CCAGACAAGTTTGTGCAGGC 59.969 55.000 1.62 0.00 42.43 4.85
1475 1644 1.200020 CCCTTCTGTCCATTCGTTTGC 59.800 52.381 0.00 0.00 0.00 3.68
1476 1645 2.778299 TCCCTTCTGTCCATTCGTTTG 58.222 47.619 0.00 0.00 0.00 2.93
1488 1657 0.449388 GCAGCGAACAATCCCTTCTG 59.551 55.000 0.00 0.00 0.00 3.02
1494 1663 0.598065 AAACCAGCAGCGAACAATCC 59.402 50.000 0.00 0.00 0.00 3.01
1495 1664 1.537202 AGAAACCAGCAGCGAACAATC 59.463 47.619 0.00 0.00 0.00 2.67
1496 1665 1.609208 AGAAACCAGCAGCGAACAAT 58.391 45.000 0.00 0.00 0.00 2.71
1502 1671 0.674895 AGGCTAAGAAACCAGCAGCG 60.675 55.000 0.00 0.00 39.63 5.18
1509 1678 3.227614 TGTTTTCCCAGGCTAAGAAACC 58.772 45.455 9.85 5.20 0.00 3.27
1598 1767 4.641989 GGTGACAGATGTATGCTGGAAAAT 59.358 41.667 0.00 0.00 37.69 1.82
1629 1801 4.524318 ATTCGTGCCCCGCTACCG 62.524 66.667 0.00 0.00 36.19 4.02
1630 1802 1.747745 AAATTCGTGCCCCGCTACC 60.748 57.895 0.00 0.00 36.19 3.18
1631 1803 1.427819 CAAATTCGTGCCCCGCTAC 59.572 57.895 0.00 0.00 36.19 3.58
1632 1804 1.747367 CCAAATTCGTGCCCCGCTA 60.747 57.895 0.00 0.00 36.19 4.26
1633 1805 3.061848 CCAAATTCGTGCCCCGCT 61.062 61.111 0.00 0.00 36.19 5.52
1634 1806 2.428960 AAACCAAATTCGTGCCCCGC 62.429 55.000 0.00 0.00 36.19 6.13
1654 1826 3.598019 AAATGCTGTGCTACCAATTGG 57.402 42.857 23.31 23.31 42.17 3.16
1671 1844 7.568199 TCAAAGGAAACGAGAAGAAGAAAAT 57.432 32.000 0.00 0.00 0.00 1.82
1685 1858 5.391312 ACATGCCTATGTTCAAAGGAAAC 57.609 39.130 0.00 0.00 45.01 2.78
1721 1972 5.918011 GTCGTCTTCCAAATGCACATAAAAA 59.082 36.000 0.00 0.00 0.00 1.94
1725 1976 3.669536 TGTCGTCTTCCAAATGCACATA 58.330 40.909 0.00 0.00 0.00 2.29
1730 1981 3.896648 TTCTTGTCGTCTTCCAAATGC 57.103 42.857 0.00 0.00 0.00 3.56
1766 2017 4.100373 AGAGAATAGAAGGCAGAGTGGTT 58.900 43.478 0.00 0.00 0.00 3.67
1770 2021 5.753721 ACAAAGAGAATAGAAGGCAGAGT 57.246 39.130 0.00 0.00 0.00 3.24
1780 2031 7.378966 TCTGGAGTACACAACAAAGAGAATAG 58.621 38.462 0.00 0.00 0.00 1.73
1792 2043 6.663523 TCAAGATGTCTATCTGGAGTACACAA 59.336 38.462 0.00 0.00 42.80 3.33
1796 2047 6.212955 GCTTCAAGATGTCTATCTGGAGTAC 58.787 44.000 0.00 0.00 42.81 2.73
1801 2052 4.047822 GACGCTTCAAGATGTCTATCTGG 58.952 47.826 3.59 0.00 42.80 3.86
1825 2076 1.954146 GTGGAACGCTTGTCGCTGA 60.954 57.895 0.00 0.00 43.23 4.26
1841 2092 1.596260 CCTCAGCTGCATTATGTCGTG 59.404 52.381 9.47 0.00 0.00 4.35
1864 2115 0.967887 TCTCGACCTTCTCCTGCCTG 60.968 60.000 0.00 0.00 0.00 4.85
1870 2121 0.108567 GCACCTTCTCGACCTTCTCC 60.109 60.000 0.00 0.00 0.00 3.71
1897 2148 2.287009 GCCGGTTTTGTGAGACTTGAAG 60.287 50.000 1.90 0.00 0.00 3.02
1903 2154 2.613506 CGGGCCGGTTTTGTGAGAC 61.614 63.158 20.56 0.00 0.00 3.36
1918 2169 2.391389 GCTCTCTTCGGCAAACGGG 61.391 63.158 0.00 0.00 44.45 5.28
1927 2178 3.358076 GACCCGGGTGCTCTCTTCG 62.358 68.421 36.01 0.00 0.00 3.79
1983 2234 4.766088 CCGCGCCTTCTTTGCTGC 62.766 66.667 0.00 0.00 0.00 5.25
2016 2267 1.937391 CTGATGCCGGAATTCGCTC 59.063 57.895 5.05 0.00 37.59 5.03
2020 2271 0.659957 GTGAGCTGATGCCGGAATTC 59.340 55.000 5.05 0.00 40.80 2.17
2026 2277 0.167470 CAAACTGTGAGCTGATGCCG 59.833 55.000 0.00 0.00 40.80 5.69
2077 2328 2.438075 GCAAGCTCTGCCAGGAGG 60.438 66.667 9.03 0.00 46.13 4.30
2111 2362 6.507900 TGAGATCATCGTTTTCCTGATAGAC 58.492 40.000 0.00 0.00 30.00 2.59
2125 2376 0.036577 GGCTCCCCATGAGATCATCG 60.037 60.000 0.00 0.00 44.42 3.84
2126 2377 0.327591 GGGCTCCCCATGAGATCATC 59.672 60.000 0.00 0.00 44.65 2.92
2127 2378 2.472614 GGGCTCCCCATGAGATCAT 58.527 57.895 0.00 0.00 44.65 2.45
2149 2400 0.667487 ACATCACCTTCGACAGCACG 60.667 55.000 0.00 0.00 0.00 5.34
2187 2438 1.154338 GCAGCAACAGACATGTCGC 60.154 57.895 19.85 16.44 39.78 5.19
2212 2463 0.744414 CATCACACCTTGCCCCTACG 60.744 60.000 0.00 0.00 0.00 3.51
2218 2469 3.057596 TCGAAAAATCATCACACCTTGCC 60.058 43.478 0.00 0.00 0.00 4.52
2239 2490 0.533755 CCTGGATGCTTGGATCGGTC 60.534 60.000 0.00 0.00 0.00 4.79
2257 2508 5.183228 TGGACGAAGAAATCAATTACCTCC 58.817 41.667 0.00 0.00 0.00 4.30
2296 2547 0.248289 AGCAGGCAAAATGATGGTGC 59.752 50.000 0.00 0.00 37.55 5.01
2413 2664 1.068753 CCTCAGTATCAGGCCAGCG 59.931 63.158 5.01 0.00 0.00 5.18
2440 2691 1.811266 GGCGAGAGATGCTGCGAAA 60.811 57.895 0.00 0.00 0.00 3.46
2476 2727 1.330306 CTTCACCATTGCTTTTCGCG 58.670 50.000 0.00 0.00 43.27 5.87
2533 2784 1.217001 TGTCGTCACACATCTTGCAC 58.783 50.000 0.00 0.00 0.00 4.57
2554 2805 1.645034 CCGTAGACATGGTCAGCTTG 58.355 55.000 0.00 0.00 34.60 4.01
2569 2820 4.382320 GGTCCGTGCCAAGCCGTA 62.382 66.667 0.00 0.00 0.00 4.02
2575 2826 4.980805 GCAGACGGTCCGTGCCAA 62.981 66.667 24.45 0.00 41.37 4.52
2581 2832 2.025727 GGTATCGCAGACGGTCCG 59.974 66.667 10.48 10.48 42.51 4.79
2596 2847 1.004918 CGGTTTGCTCTTCCGAGGT 60.005 57.895 0.00 0.00 46.05 3.85
2620 2871 3.966026 GAAGTCGACGCACCCTCCG 62.966 68.421 10.46 0.00 0.00 4.63
2719 2970 2.733593 GTGTCCGACAGCGTGACC 60.734 66.667 0.08 0.00 37.10 4.02
2734 2985 0.317103 CTAGATCGTTCTCCGGCGTG 60.317 60.000 6.01 0.00 37.11 5.34
2749 3000 2.759973 CTCACGCCCCAGCCTAGA 60.760 66.667 0.00 0.00 34.57 2.43
2794 3045 3.687321 TTCCAGCTGCATCCGCTCC 62.687 63.158 8.66 0.00 39.64 4.70
2803 3054 0.250901 TCAGAAACCCTTCCAGCTGC 60.251 55.000 8.66 0.00 31.28 5.25
2809 3060 2.306847 TGCAAGTTCAGAAACCCTTCC 58.693 47.619 0.00 0.00 35.92 3.46
2827 3078 2.421619 GTAGCATTCTGGCCTAGATGC 58.578 52.381 22.16 22.16 38.81 3.91
2845 3096 2.529136 ACACCAGGCTGCAGGGTA 60.529 61.111 17.12 0.00 32.55 3.69
2914 3165 0.606673 GGCCTCACAGGAACCAACTC 60.607 60.000 0.00 0.00 37.67 3.01
2924 3175 0.037512 CACTCACTCAGGCCTCACAG 60.038 60.000 0.00 0.99 0.00 3.66
2944 3195 0.185175 AGGAGGGGTGACACCAAAAC 59.815 55.000 25.75 12.82 41.02 2.43
3045 3296 9.888878 CAAAACCTATCATAGCATCATACAAAG 57.111 33.333 0.00 0.00 0.00 2.77
3081 3332 6.889301 ACCAATCATAGCATTAGACAATGG 57.111 37.500 0.01 0.00 41.64 3.16
3154 3406 5.177511 ACACATATCTGTTTCTGAACGTGTG 59.822 40.000 0.00 0.00 38.65 3.82
3186 3438 7.448161 TGTTTCAGGTTGACTCATCAAATACAT 59.552 33.333 0.00 0.00 46.40 2.29
3196 3448 6.763135 GCATATATCTGTTTCAGGTTGACTCA 59.237 38.462 0.00 0.00 31.51 3.41
3197 3449 6.763135 TGCATATATCTGTTTCAGGTTGACTC 59.237 38.462 0.00 0.00 31.51 3.36
3198 3450 6.540189 GTGCATATATCTGTTTCAGGTTGACT 59.460 38.462 0.00 0.00 31.51 3.41
3212 3465 5.300286 GCTTTTCCAAGTGGTGCATATATCT 59.700 40.000 0.00 0.00 36.34 1.98
3215 3468 4.339748 TGCTTTTCCAAGTGGTGCATATA 58.660 39.130 0.00 0.00 36.34 0.86
3218 3471 1.412079 TGCTTTTCCAAGTGGTGCAT 58.588 45.000 0.00 0.00 36.34 3.96
3219 3472 1.189752 TTGCTTTTCCAAGTGGTGCA 58.810 45.000 0.00 2.25 36.34 4.57
3220 3473 2.307934 TTTGCTTTTCCAAGTGGTGC 57.692 45.000 0.00 0.00 36.34 5.01
3277 3544 5.817616 ACGACGAACTTGTAACTACATTG 57.182 39.130 0.00 0.00 35.89 2.82
3307 3574 1.296715 GGGATGCACTATAGGCCCG 59.703 63.158 0.00 0.00 0.00 6.13
3324 3591 1.415289 TCTGCTGCAGATGACATAGGG 59.585 52.381 27.35 0.00 35.39 3.53
3351 3618 7.016296 TCAGGGGAAAATTTCTGTAATTTCCT 58.984 34.615 13.89 5.72 43.84 3.36
3408 3678 3.862267 CACGATTCTTTGGTTGTGCAAAA 59.138 39.130 0.00 0.00 0.00 2.44
3491 3762 2.183046 GCAGACCTCAGCTCCGTC 59.817 66.667 0.00 0.00 0.00 4.79
3530 3801 3.478274 GAGAGCAGGGGAGGGCTG 61.478 72.222 0.00 0.00 41.22 4.85
3532 3803 4.814041 AGGAGAGCAGGGGAGGGC 62.814 72.222 0.00 0.00 0.00 5.19
3641 3912 0.034337 TCCCCAACTGCGAGTACAAC 59.966 55.000 0.00 0.00 0.00 3.32
3725 3996 0.250338 AAGTCAACCTCTTCACGCCC 60.250 55.000 0.00 0.00 0.00 6.13
3770 4041 1.852895 GAGCACACGATGATAACGGAC 59.147 52.381 0.00 0.00 34.93 4.79
3780 4051 0.463204 CTGATCAGGGAGCACACGAT 59.537 55.000 15.38 0.00 0.00 3.73
3858 4129 5.546621 TCTATTGTGCTACCATAGTTCCC 57.453 43.478 0.00 0.00 0.00 3.97
3877 4148 7.252612 TCATTCCACCTCTTGTGTATTTCTA 57.747 36.000 0.00 0.00 43.85 2.10
3886 4157 5.183530 TGATGAATCATTCCACCTCTTGT 57.816 39.130 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.