Multiple sequence alignment - TraesCS7B01G464500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G464500 chr7B 100.000 2549 0 0 1 2549 720989758 720987210 0.000000e+00 4708
1 TraesCS7B01G464500 chr4A 96.367 1982 68 4 569 2549 705529252 705527274 0.000000e+00 3258
2 TraesCS7B01G464500 chr1B 96.326 1987 66 5 568 2549 581717562 581715578 0.000000e+00 3258
3 TraesCS7B01G464500 chr1B 96.115 1982 71 6 569 2549 520844119 520842143 0.000000e+00 3229
4 TraesCS7B01G464500 chr2B 96.084 1992 71 6 560 2549 692955889 692957875 0.000000e+00 3240
5 TraesCS7B01G464500 chr2B 95.884 1992 75 6 559 2549 458657415 458659400 0.000000e+00 3217
6 TraesCS7B01G464500 chr2B 95.628 1990 78 8 561 2549 667899793 667897812 0.000000e+00 3184
7 TraesCS7B01G464500 chr5B 95.917 1984 75 4 569 2549 497276165 497278145 0.000000e+00 3210
8 TraesCS7B01G464500 chr3B 95.674 1988 79 7 567 2549 19701235 19703220 0.000000e+00 3188
9 TraesCS7B01G464500 chr3B 95.491 1996 83 7 558 2549 108092323 108090331 0.000000e+00 3181
10 TraesCS7B01G464500 chr7D 91.579 570 42 6 2 568 622709909 622710475 0.000000e+00 782
11 TraesCS7B01G464500 chr7D 78.571 252 40 7 16 267 259844473 259844236 1.220000e-33 154
12 TraesCS7B01G464500 chr7D 79.558 181 33 3 87 266 45097720 45097897 2.660000e-25 126
13 TraesCS7B01G464500 chr3D 85.020 247 32 3 22 266 16494686 16494929 1.960000e-61 246
14 TraesCS7B01G464500 chr3D 82.397 267 41 4 2 266 261777231 261777493 7.090000e-56 228
15 TraesCS7B01G464500 chr3D 82.403 233 35 4 2 232 261771026 261771254 5.560000e-47 198
16 TraesCS7B01G464500 chr3D 79.457 258 43 9 10 266 11357698 11357946 9.370000e-40 174
17 TraesCS7B01G464500 chr3D 75.758 264 47 12 7 267 43898545 43898794 1.600000e-22 117
18 TraesCS7B01G464500 chrUn 87.333 150 15 3 2 149 311986807 311986954 4.360000e-38 169
19 TraesCS7B01G464500 chr3A 79.500 200 39 2 68 267 56053747 56053944 9.510000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G464500 chr7B 720987210 720989758 2548 True 4708 4708 100.000 1 2549 1 chr7B.!!$R1 2548
1 TraesCS7B01G464500 chr4A 705527274 705529252 1978 True 3258 3258 96.367 569 2549 1 chr4A.!!$R1 1980
2 TraesCS7B01G464500 chr1B 581715578 581717562 1984 True 3258 3258 96.326 568 2549 1 chr1B.!!$R2 1981
3 TraesCS7B01G464500 chr1B 520842143 520844119 1976 True 3229 3229 96.115 569 2549 1 chr1B.!!$R1 1980
4 TraesCS7B01G464500 chr2B 692955889 692957875 1986 False 3240 3240 96.084 560 2549 1 chr2B.!!$F2 1989
5 TraesCS7B01G464500 chr2B 458657415 458659400 1985 False 3217 3217 95.884 559 2549 1 chr2B.!!$F1 1990
6 TraesCS7B01G464500 chr2B 667897812 667899793 1981 True 3184 3184 95.628 561 2549 1 chr2B.!!$R1 1988
7 TraesCS7B01G464500 chr5B 497276165 497278145 1980 False 3210 3210 95.917 569 2549 1 chr5B.!!$F1 1980
8 TraesCS7B01G464500 chr3B 19701235 19703220 1985 False 3188 3188 95.674 567 2549 1 chr3B.!!$F1 1982
9 TraesCS7B01G464500 chr3B 108090331 108092323 1992 True 3181 3181 95.491 558 2549 1 chr3B.!!$R1 1991
10 TraesCS7B01G464500 chr7D 622709909 622710475 566 False 782 782 91.579 2 568 1 chr7D.!!$F2 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 177 0.032815 GACATCTTCCGCTCCTAGCC 59.967 60.0 0.0 0.0 38.18 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 2042 0.178068 CCTAGTGGTTACCAGCGCAT 59.822 55.0 11.47 0.0 32.34 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.988832 TCCCAGTGGGTGATACCAAC 59.011 55.000 27.87 0.00 42.74 3.77
48 49 0.325765 AACTGGGACTAGAGGGGCTC 60.326 60.000 0.00 0.00 0.00 4.70
54 55 2.443016 CTAGAGGGGCTCGCAGGT 60.443 66.667 0.00 0.00 35.36 4.00
88 90 3.443045 CCTGCCACCACCGCATTC 61.443 66.667 0.00 0.00 35.25 2.67
95 97 2.350895 CCACCGCATTCAGTCCCA 59.649 61.111 0.00 0.00 0.00 4.37
99 101 0.606401 ACCGCATTCAGTCCCAGTTG 60.606 55.000 0.00 0.00 0.00 3.16
130 132 3.516911 GGGACTAGAGGTCACGGAT 57.483 57.895 0.00 0.00 46.16 4.18
131 133 1.033574 GGGACTAGAGGTCACGGATG 58.966 60.000 0.00 0.00 46.16 3.51
132 134 1.409802 GGGACTAGAGGTCACGGATGA 60.410 57.143 0.00 0.00 46.16 2.92
133 135 2.376109 GGACTAGAGGTCACGGATGAA 58.624 52.381 0.00 0.00 46.16 2.57
134 136 2.959707 GGACTAGAGGTCACGGATGAAT 59.040 50.000 0.00 0.00 46.16 2.57
135 137 3.004944 GGACTAGAGGTCACGGATGAATC 59.995 52.174 0.00 0.00 46.16 2.52
136 138 2.619177 ACTAGAGGTCACGGATGAATCG 59.381 50.000 0.00 0.00 36.31 3.34
137 139 0.747255 AGAGGTCACGGATGAATCGG 59.253 55.000 0.00 0.00 36.31 4.18
138 140 0.249489 GAGGTCACGGATGAATCGGG 60.249 60.000 3.32 0.00 36.31 5.14
139 141 0.686441 AGGTCACGGATGAATCGGGA 60.686 55.000 3.32 0.00 37.75 5.14
141 143 2.896278 TCACGGATGAATCGGGACT 58.104 52.632 3.32 0.00 34.91 3.85
142 144 2.061509 TCACGGATGAATCGGGACTA 57.938 50.000 3.32 0.00 34.91 2.59
143 145 1.954382 TCACGGATGAATCGGGACTAG 59.046 52.381 3.32 0.00 34.91 2.57
144 146 1.954382 CACGGATGAATCGGGACTAGA 59.046 52.381 0.00 0.00 31.91 2.43
145 147 2.030717 CACGGATGAATCGGGACTAGAG 60.031 54.545 0.00 0.00 31.91 2.43
146 148 1.542030 CGGATGAATCGGGACTAGAGG 59.458 57.143 0.00 0.00 0.00 3.69
147 149 2.599677 GGATGAATCGGGACTAGAGGT 58.400 52.381 0.00 0.00 0.00 3.85
148 150 2.297597 GGATGAATCGGGACTAGAGGTG 59.702 54.545 0.00 0.00 0.00 4.00
149 151 2.820728 TGAATCGGGACTAGAGGTGA 57.179 50.000 0.00 0.00 0.00 4.02
150 152 2.376109 TGAATCGGGACTAGAGGTGAC 58.624 52.381 0.00 0.00 0.00 3.67
151 153 1.682323 GAATCGGGACTAGAGGTGACC 59.318 57.143 0.00 0.00 0.00 4.02
152 154 0.465824 ATCGGGACTAGAGGTGACCG 60.466 60.000 0.00 0.00 42.65 4.79
153 155 1.378250 CGGGACTAGAGGTGACCGT 60.378 63.158 0.00 0.00 39.04 4.83
154 156 1.654954 CGGGACTAGAGGTGACCGTG 61.655 65.000 0.00 0.00 39.04 4.94
155 157 0.611340 GGGACTAGAGGTGACCGTGT 60.611 60.000 0.00 0.00 0.00 4.49
156 158 0.526662 GGACTAGAGGTGACCGTGTG 59.473 60.000 0.00 0.00 0.00 3.82
157 159 1.531423 GACTAGAGGTGACCGTGTGA 58.469 55.000 0.00 0.00 0.00 3.58
158 160 1.199558 GACTAGAGGTGACCGTGTGAC 59.800 57.143 0.00 0.00 0.00 3.67
159 161 1.244816 CTAGAGGTGACCGTGTGACA 58.755 55.000 0.00 0.00 0.00 3.58
160 162 1.819288 CTAGAGGTGACCGTGTGACAT 59.181 52.381 0.00 0.00 0.00 3.06
161 163 0.603569 AGAGGTGACCGTGTGACATC 59.396 55.000 0.00 1.42 31.35 3.06
162 164 0.603569 GAGGTGACCGTGTGACATCT 59.396 55.000 0.00 0.00 28.95 2.90
163 165 1.000955 GAGGTGACCGTGTGACATCTT 59.999 52.381 0.00 0.00 28.95 2.40
164 166 1.000955 AGGTGACCGTGTGACATCTTC 59.999 52.381 0.00 0.00 0.00 2.87
165 167 1.429463 GTGACCGTGTGACATCTTCC 58.571 55.000 0.00 0.00 0.00 3.46
166 168 0.038618 TGACCGTGTGACATCTTCCG 60.039 55.000 0.00 0.00 0.00 4.30
167 169 1.352156 GACCGTGTGACATCTTCCGC 61.352 60.000 0.00 0.00 0.00 5.54
168 170 1.079819 CCGTGTGACATCTTCCGCT 60.080 57.895 0.00 0.00 0.00 5.52
169 171 1.078759 CCGTGTGACATCTTCCGCTC 61.079 60.000 0.00 0.00 0.00 5.03
170 172 1.078759 CGTGTGACATCTTCCGCTCC 61.079 60.000 0.00 0.00 0.00 4.70
171 173 0.247736 GTGTGACATCTTCCGCTCCT 59.752 55.000 0.00 0.00 0.00 3.69
172 174 1.476891 GTGTGACATCTTCCGCTCCTA 59.523 52.381 0.00 0.00 0.00 2.94
173 175 1.751351 TGTGACATCTTCCGCTCCTAG 59.249 52.381 0.00 0.00 0.00 3.02
174 176 0.747255 TGACATCTTCCGCTCCTAGC 59.253 55.000 0.00 0.00 38.02 3.42
175 177 0.032815 GACATCTTCCGCTCCTAGCC 59.967 60.000 0.00 0.00 38.18 3.93
176 178 0.687757 ACATCTTCCGCTCCTAGCCA 60.688 55.000 0.00 0.00 38.18 4.75
177 179 0.683973 CATCTTCCGCTCCTAGCCAT 59.316 55.000 0.00 0.00 38.18 4.40
178 180 1.071385 CATCTTCCGCTCCTAGCCATT 59.929 52.381 0.00 0.00 38.18 3.16
179 181 0.465705 TCTTCCGCTCCTAGCCATTG 59.534 55.000 0.00 0.00 38.18 2.82
180 182 0.533755 CTTCCGCTCCTAGCCATTGG 60.534 60.000 0.00 0.00 38.18 3.16
181 183 0.980754 TTCCGCTCCTAGCCATTGGA 60.981 55.000 6.95 0.00 38.18 3.53
182 184 0.980754 TCCGCTCCTAGCCATTGGAA 60.981 55.000 6.95 0.00 38.18 3.53
183 185 0.815615 CCGCTCCTAGCCATTGGAAC 60.816 60.000 6.95 0.00 38.18 3.62
184 186 0.179000 CGCTCCTAGCCATTGGAACT 59.821 55.000 6.95 0.00 38.18 3.01
185 187 1.407437 CGCTCCTAGCCATTGGAACTT 60.407 52.381 6.95 0.00 38.18 2.66
186 188 2.019984 GCTCCTAGCCATTGGAACTTG 58.980 52.381 6.95 0.00 34.48 3.16
187 189 2.648059 CTCCTAGCCATTGGAACTTGG 58.352 52.381 6.95 5.73 35.83 3.61
188 190 2.239654 CTCCTAGCCATTGGAACTTGGA 59.760 50.000 6.95 9.68 34.94 3.53
189 191 2.026262 TCCTAGCCATTGGAACTTGGAC 60.026 50.000 6.95 0.00 34.94 4.02
190 192 2.025887 CCTAGCCATTGGAACTTGGACT 60.026 50.000 6.95 0.00 34.94 3.85
191 193 3.199946 CCTAGCCATTGGAACTTGGACTA 59.800 47.826 6.95 0.00 34.94 2.59
192 194 3.356529 AGCCATTGGAACTTGGACTAG 57.643 47.619 6.95 0.00 34.94 2.57
193 195 2.644798 AGCCATTGGAACTTGGACTAGT 59.355 45.455 6.95 0.00 34.94 2.57
194 196 2.749621 GCCATTGGAACTTGGACTAGTG 59.250 50.000 6.95 0.00 34.94 2.74
195 197 3.347216 CCATTGGAACTTGGACTAGTGG 58.653 50.000 0.00 0.00 34.94 4.00
196 198 3.244911 CCATTGGAACTTGGACTAGTGGT 60.245 47.826 0.00 0.00 34.94 4.16
197 199 3.764237 TTGGAACTTGGACTAGTGGTC 57.236 47.619 0.00 0.00 43.79 4.02
209 211 3.288964 ACTAGTGGTCCCATTAGTCTCG 58.711 50.000 13.91 0.00 43.01 4.04
210 212 1.486211 AGTGGTCCCATTAGTCTCGG 58.514 55.000 0.00 0.00 0.00 4.63
211 213 1.192428 GTGGTCCCATTAGTCTCGGT 58.808 55.000 0.00 0.00 0.00 4.69
212 214 1.136500 GTGGTCCCATTAGTCTCGGTC 59.864 57.143 0.00 0.00 0.00 4.79
213 215 0.751452 GGTCCCATTAGTCTCGGTCC 59.249 60.000 0.00 0.00 0.00 4.46
214 216 1.481871 GTCCCATTAGTCTCGGTCCA 58.518 55.000 0.00 0.00 0.00 4.02
215 217 1.829222 GTCCCATTAGTCTCGGTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
216 218 2.235402 GTCCCATTAGTCTCGGTCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
217 219 2.907696 TCCCATTAGTCTCGGTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
218 220 3.007635 CCCATTAGTCTCGGTCCAAAAC 58.992 50.000 0.00 0.00 0.00 2.43
219 221 3.307480 CCCATTAGTCTCGGTCCAAAACT 60.307 47.826 0.00 0.00 0.00 2.66
220 222 3.933332 CCATTAGTCTCGGTCCAAAACTC 59.067 47.826 0.00 0.00 0.00 3.01
221 223 3.293311 TTAGTCTCGGTCCAAAACTCG 57.707 47.619 0.00 0.00 0.00 4.18
222 224 0.317479 AGTCTCGGTCCAAAACTCGG 59.683 55.000 0.00 0.00 0.00 4.63
223 225 0.033090 GTCTCGGTCCAAAACTCGGT 59.967 55.000 0.00 0.00 0.00 4.69
224 226 0.316204 TCTCGGTCCAAAACTCGGTC 59.684 55.000 0.00 0.00 0.00 4.79
225 227 1.007038 TCGGTCCAAAACTCGGTCG 60.007 57.895 0.00 0.00 0.00 4.79
226 228 2.025418 CGGTCCAAAACTCGGTCGG 61.025 63.158 0.00 0.00 0.00 4.79
227 229 1.670083 GGTCCAAAACTCGGTCGGG 60.670 63.158 0.00 0.00 0.00 5.14
228 230 1.368579 GTCCAAAACTCGGTCGGGA 59.631 57.895 0.00 0.00 0.00 5.14
229 231 0.947660 GTCCAAAACTCGGTCGGGAC 60.948 60.000 0.00 0.00 38.15 4.46
230 232 1.117142 TCCAAAACTCGGTCGGGACT 61.117 55.000 0.00 0.00 0.00 3.85
231 233 0.604578 CCAAAACTCGGTCGGGACTA 59.395 55.000 0.00 0.00 0.00 2.59
232 234 1.206371 CCAAAACTCGGTCGGGACTAT 59.794 52.381 0.00 0.00 0.00 2.12
233 235 2.354403 CCAAAACTCGGTCGGGACTATT 60.354 50.000 0.00 0.00 0.00 1.73
234 236 2.667473 AAACTCGGTCGGGACTATTG 57.333 50.000 0.00 0.00 0.00 1.90
235 237 0.175073 AACTCGGTCGGGACTATTGC 59.825 55.000 0.00 0.00 0.00 3.56
236 238 0.683504 ACTCGGTCGGGACTATTGCT 60.684 55.000 0.00 0.00 0.00 3.91
237 239 0.460311 CTCGGTCGGGACTATTGCTT 59.540 55.000 0.00 0.00 0.00 3.91
238 240 0.458669 TCGGTCGGGACTATTGCTTC 59.541 55.000 0.00 0.00 0.00 3.86
239 241 0.174845 CGGTCGGGACTATTGCTTCA 59.825 55.000 0.00 0.00 0.00 3.02
240 242 1.802880 CGGTCGGGACTATTGCTTCAG 60.803 57.143 0.00 0.00 0.00 3.02
241 243 1.480954 GGTCGGGACTATTGCTTCAGA 59.519 52.381 0.00 0.00 0.00 3.27
242 244 2.541556 GTCGGGACTATTGCTTCAGAC 58.458 52.381 0.00 0.00 0.00 3.51
243 245 2.094182 GTCGGGACTATTGCTTCAGACA 60.094 50.000 0.00 0.00 0.00 3.41
244 246 2.565391 TCGGGACTATTGCTTCAGACAA 59.435 45.455 0.00 0.00 0.00 3.18
245 247 3.007506 TCGGGACTATTGCTTCAGACAAA 59.992 43.478 0.00 0.00 0.00 2.83
246 248 3.751175 CGGGACTATTGCTTCAGACAAAA 59.249 43.478 0.00 0.00 0.00 2.44
247 249 4.142816 CGGGACTATTGCTTCAGACAAAAG 60.143 45.833 0.00 0.00 0.00 2.27
248 250 4.156739 GGGACTATTGCTTCAGACAAAAGG 59.843 45.833 0.00 0.00 0.00 3.11
249 251 4.379918 GGACTATTGCTTCAGACAAAAGGC 60.380 45.833 0.00 0.00 0.00 4.35
250 252 3.507622 ACTATTGCTTCAGACAAAAGGCC 59.492 43.478 0.00 0.00 0.00 5.19
251 253 2.071778 TTGCTTCAGACAAAAGGCCT 57.928 45.000 0.00 0.00 0.00 5.19
252 254 1.321474 TGCTTCAGACAAAAGGCCTG 58.679 50.000 5.69 0.00 0.00 4.85
253 255 1.322442 GCTTCAGACAAAAGGCCTGT 58.678 50.000 5.69 0.00 0.00 4.00
254 256 1.683385 GCTTCAGACAAAAGGCCTGTT 59.317 47.619 5.69 3.08 0.00 3.16
255 257 2.101415 GCTTCAGACAAAAGGCCTGTTT 59.899 45.455 5.69 6.56 0.00 2.83
256 258 3.430790 GCTTCAGACAAAAGGCCTGTTTT 60.431 43.478 5.69 0.00 0.00 2.43
257 259 4.363138 CTTCAGACAAAAGGCCTGTTTTC 58.637 43.478 13.22 13.22 0.00 2.29
258 260 3.631250 TCAGACAAAAGGCCTGTTTTCT 58.369 40.909 17.29 17.29 0.00 2.52
259 261 4.787551 TCAGACAAAAGGCCTGTTTTCTA 58.212 39.130 21.56 9.60 0.00 2.10
260 262 4.578928 TCAGACAAAAGGCCTGTTTTCTAC 59.421 41.667 21.56 5.36 0.00 2.59
261 263 4.580580 CAGACAAAAGGCCTGTTTTCTACT 59.419 41.667 21.56 7.35 0.00 2.57
262 264 5.763204 CAGACAAAAGGCCTGTTTTCTACTA 59.237 40.000 21.56 0.00 0.00 1.82
263 265 5.998363 AGACAAAAGGCCTGTTTTCTACTAG 59.002 40.000 20.83 3.38 0.00 2.57
264 266 5.691896 ACAAAAGGCCTGTTTTCTACTAGT 58.308 37.500 5.69 0.00 0.00 2.57
265 267 5.531287 ACAAAAGGCCTGTTTTCTACTAGTG 59.469 40.000 5.69 0.00 0.00 2.74
266 268 3.983044 AGGCCTGTTTTCTACTAGTGG 57.017 47.619 3.11 1.87 0.00 4.00
267 269 3.517612 AGGCCTGTTTTCTACTAGTGGA 58.482 45.455 3.11 4.58 0.00 4.02
268 270 3.908103 AGGCCTGTTTTCTACTAGTGGAA 59.092 43.478 16.90 16.90 0.00 3.53
269 271 4.536489 AGGCCTGTTTTCTACTAGTGGAAT 59.464 41.667 20.78 2.45 30.18 3.01
270 272 5.724854 AGGCCTGTTTTCTACTAGTGGAATA 59.275 40.000 20.78 14.14 30.18 1.75
271 273 6.049790 GGCCTGTTTTCTACTAGTGGAATAG 58.950 44.000 20.78 17.58 30.18 1.73
272 274 5.524281 GCCTGTTTTCTACTAGTGGAATAGC 59.476 44.000 20.78 14.97 30.18 2.97
273 275 6.640518 CCTGTTTTCTACTAGTGGAATAGCA 58.359 40.000 20.78 17.20 30.18 3.49
274 276 7.103641 CCTGTTTTCTACTAGTGGAATAGCAA 58.896 38.462 20.78 10.43 30.18 3.91
275 277 7.606456 CCTGTTTTCTACTAGTGGAATAGCAAA 59.394 37.037 20.78 10.10 30.18 3.68
276 278 9.167311 CTGTTTTCTACTAGTGGAATAGCAAAT 57.833 33.333 20.78 0.00 30.18 2.32
277 279 9.162764 TGTTTTCTACTAGTGGAATAGCAAATC 57.837 33.333 20.78 6.41 30.18 2.17
278 280 8.613482 GTTTTCTACTAGTGGAATAGCAAATCC 58.387 37.037 20.78 1.40 36.21 3.01
279 281 7.432148 TTCTACTAGTGGAATAGCAAATCCA 57.568 36.000 16.90 0.71 43.32 3.41
280 282 7.618019 TCTACTAGTGGAATAGCAAATCCAT 57.382 36.000 6.45 1.50 46.78 3.41
281 283 8.721133 TCTACTAGTGGAATAGCAAATCCATA 57.279 34.615 6.45 2.37 46.78 2.74
282 284 9.154632 TCTACTAGTGGAATAGCAAATCCATAA 57.845 33.333 6.45 0.08 46.78 1.90
283 285 9.950496 CTACTAGTGGAATAGCAAATCCATAAT 57.050 33.333 5.39 1.57 46.78 1.28
285 287 9.646522 ACTAGTGGAATAGCAAATCCATAATTT 57.353 29.630 7.51 0.00 46.78 1.82
287 289 8.537728 AGTGGAATAGCAAATCCATAATTTCA 57.462 30.769 7.51 0.00 46.78 2.69
288 290 8.980596 AGTGGAATAGCAAATCCATAATTTCAA 58.019 29.630 7.51 0.00 46.78 2.69
289 291 9.598517 GTGGAATAGCAAATCCATAATTTCAAA 57.401 29.630 7.51 0.00 46.78 2.69
290 292 9.598517 TGGAATAGCAAATCCATAATTTCAAAC 57.401 29.630 0.71 0.00 40.74 2.93
291 293 9.598517 GGAATAGCAAATCCATAATTTCAAACA 57.401 29.630 0.00 0.00 35.32 2.83
350 352 9.959749 TGTATTATTTCCAAGAACAAAGTTCAC 57.040 29.630 11.92 0.00 0.00 3.18
351 353 9.113876 GTATTATTTCCAAGAACAAAGTTCACG 57.886 33.333 11.92 2.88 0.00 4.35
352 354 5.828299 ATTTCCAAGAACAAAGTTCACGA 57.172 34.783 11.92 2.08 0.00 4.35
353 355 4.609691 TTCCAAGAACAAAGTTCACGAC 57.390 40.909 11.92 0.00 0.00 4.34
354 356 3.601435 TCCAAGAACAAAGTTCACGACA 58.399 40.909 11.92 0.00 0.00 4.35
355 357 4.196193 TCCAAGAACAAAGTTCACGACAT 58.804 39.130 11.92 0.00 0.00 3.06
356 358 4.638421 TCCAAGAACAAAGTTCACGACATT 59.362 37.500 11.92 0.00 0.00 2.71
357 359 5.818336 TCCAAGAACAAAGTTCACGACATTA 59.182 36.000 11.92 0.00 0.00 1.90
358 360 6.485313 TCCAAGAACAAAGTTCACGACATTAT 59.515 34.615 11.92 0.00 0.00 1.28
359 361 7.012894 TCCAAGAACAAAGTTCACGACATTATT 59.987 33.333 11.92 0.00 0.00 1.40
360 362 8.286800 CCAAGAACAAAGTTCACGACATTATTA 58.713 33.333 11.92 0.00 0.00 0.98
361 363 9.318041 CAAGAACAAAGTTCACGACATTATTAG 57.682 33.333 11.92 0.00 0.00 1.73
362 364 8.029642 AGAACAAAGTTCACGACATTATTAGG 57.970 34.615 11.92 0.00 0.00 2.69
363 365 7.876068 AGAACAAAGTTCACGACATTATTAGGA 59.124 33.333 11.92 0.00 0.00 2.94
364 366 7.360575 ACAAAGTTCACGACATTATTAGGAC 57.639 36.000 0.00 0.00 0.00 3.85
365 367 6.370718 ACAAAGTTCACGACATTATTAGGACC 59.629 38.462 0.00 0.00 0.00 4.46
366 368 5.670792 AGTTCACGACATTATTAGGACCA 57.329 39.130 0.00 0.00 0.00 4.02
367 369 6.235231 AGTTCACGACATTATTAGGACCAT 57.765 37.500 0.00 0.00 0.00 3.55
368 370 6.281405 AGTTCACGACATTATTAGGACCATC 58.719 40.000 0.00 0.00 0.00 3.51
369 371 5.862678 TCACGACATTATTAGGACCATCA 57.137 39.130 0.00 0.00 0.00 3.07
370 372 6.228616 TCACGACATTATTAGGACCATCAA 57.771 37.500 0.00 0.00 0.00 2.57
371 373 6.645306 TCACGACATTATTAGGACCATCAAA 58.355 36.000 0.00 0.00 0.00 2.69
372 374 7.106890 TCACGACATTATTAGGACCATCAAAA 58.893 34.615 0.00 0.00 0.00 2.44
373 375 7.279981 TCACGACATTATTAGGACCATCAAAAG 59.720 37.037 0.00 0.00 0.00 2.27
374 376 7.065803 CACGACATTATTAGGACCATCAAAAGT 59.934 37.037 0.00 0.00 0.00 2.66
375 377 8.262227 ACGACATTATTAGGACCATCAAAAGTA 58.738 33.333 0.00 0.00 0.00 2.24
376 378 9.104965 CGACATTATTAGGACCATCAAAAGTAA 57.895 33.333 0.00 0.00 0.00 2.24
383 385 5.810095 AGGACCATCAAAAGTAAAGAGAGG 58.190 41.667 0.00 0.00 0.00 3.69
384 386 5.548056 AGGACCATCAAAAGTAAAGAGAGGA 59.452 40.000 0.00 0.00 0.00 3.71
385 387 6.044404 AGGACCATCAAAAGTAAAGAGAGGAA 59.956 38.462 0.00 0.00 0.00 3.36
386 388 6.887002 GGACCATCAAAAGTAAAGAGAGGAAT 59.113 38.462 0.00 0.00 0.00 3.01
387 389 7.148171 GGACCATCAAAAGTAAAGAGAGGAATG 60.148 40.741 0.00 0.00 0.00 2.67
388 390 6.151817 ACCATCAAAAGTAAAGAGAGGAATGC 59.848 38.462 0.00 0.00 0.00 3.56
389 391 5.862924 TCAAAAGTAAAGAGAGGAATGCG 57.137 39.130 0.00 0.00 0.00 4.73
390 392 4.695455 TCAAAAGTAAAGAGAGGAATGCGG 59.305 41.667 0.00 0.00 0.00 5.69
391 393 4.553330 AAAGTAAAGAGAGGAATGCGGA 57.447 40.909 0.00 0.00 0.00 5.54
392 394 3.528597 AGTAAAGAGAGGAATGCGGAC 57.471 47.619 0.00 0.00 0.00 4.79
393 395 2.832129 AGTAAAGAGAGGAATGCGGACA 59.168 45.455 0.00 0.00 0.00 4.02
394 396 3.452627 AGTAAAGAGAGGAATGCGGACAT 59.547 43.478 0.00 0.00 38.49 3.06
396 398 2.322355 AGAGAGGAATGCGGACATTG 57.678 50.000 0.00 0.00 46.59 2.82
397 399 1.833630 AGAGAGGAATGCGGACATTGA 59.166 47.619 0.00 0.00 46.59 2.57
398 400 2.158986 AGAGAGGAATGCGGACATTGAG 60.159 50.000 0.00 0.00 46.59 3.02
399 401 0.659957 GAGGAATGCGGACATTGAGC 59.340 55.000 0.00 0.00 46.59 4.26
400 402 0.035152 AGGAATGCGGACATTGAGCA 60.035 50.000 8.17 8.17 46.59 4.26
405 407 2.689553 TGCGGACATTGAGCATCTAA 57.310 45.000 0.00 0.00 35.81 2.10
406 408 3.198409 TGCGGACATTGAGCATCTAAT 57.802 42.857 0.00 0.00 35.81 1.73
407 409 3.133691 TGCGGACATTGAGCATCTAATC 58.866 45.455 0.00 0.00 35.81 1.75
408 410 2.481952 GCGGACATTGAGCATCTAATCC 59.518 50.000 0.00 0.00 34.92 3.01
409 411 3.732212 CGGACATTGAGCATCTAATCCA 58.268 45.455 0.00 0.00 31.71 3.41
410 412 3.744942 CGGACATTGAGCATCTAATCCAG 59.255 47.826 0.00 0.00 31.71 3.86
411 413 4.502087 CGGACATTGAGCATCTAATCCAGA 60.502 45.833 0.00 0.00 37.79 3.86
412 414 4.996122 GGACATTGAGCATCTAATCCAGAG 59.004 45.833 0.00 0.00 36.48 3.35
413 415 4.387598 ACATTGAGCATCTAATCCAGAGC 58.612 43.478 0.00 0.00 36.48 4.09
414 416 4.141551 ACATTGAGCATCTAATCCAGAGCA 60.142 41.667 0.00 0.00 36.48 4.26
415 417 3.747854 TGAGCATCTAATCCAGAGCAG 57.252 47.619 0.00 0.00 36.48 4.24
416 418 3.303049 TGAGCATCTAATCCAGAGCAGA 58.697 45.455 0.00 0.00 36.48 4.26
417 419 3.708121 TGAGCATCTAATCCAGAGCAGAA 59.292 43.478 0.00 0.00 36.48 3.02
418 420 4.162888 TGAGCATCTAATCCAGAGCAGAAA 59.837 41.667 0.00 0.00 36.48 2.52
419 421 5.163227 TGAGCATCTAATCCAGAGCAGAAAT 60.163 40.000 0.00 0.00 36.48 2.17
420 422 5.064558 AGCATCTAATCCAGAGCAGAAATG 58.935 41.667 0.00 0.00 36.48 2.32
421 423 4.320348 GCATCTAATCCAGAGCAGAAATGC 60.320 45.833 0.00 0.00 36.48 3.56
422 424 4.492494 TCTAATCCAGAGCAGAAATGCA 57.508 40.909 2.73 0.00 37.25 3.96
423 425 4.194640 TCTAATCCAGAGCAGAAATGCAC 58.805 43.478 2.73 0.00 37.25 4.57
424 426 2.502142 ATCCAGAGCAGAAATGCACA 57.498 45.000 2.73 0.00 37.25 4.57
425 427 2.502142 TCCAGAGCAGAAATGCACAT 57.498 45.000 2.73 0.00 37.25 3.21
426 428 2.089201 TCCAGAGCAGAAATGCACATG 58.911 47.619 2.73 0.00 37.25 3.21
427 429 1.469251 CCAGAGCAGAAATGCACATGC 60.469 52.381 2.73 6.23 42.50 4.06
444 446 7.990541 GCACATGCATCAATAGTAAATTTCA 57.009 32.000 0.00 0.00 41.59 2.69
445 447 8.410030 GCACATGCATCAATAGTAAATTTCAA 57.590 30.769 0.00 0.00 41.59 2.69
446 448 8.871862 GCACATGCATCAATAGTAAATTTCAAA 58.128 29.630 0.00 0.00 41.59 2.69
507 509 9.959749 TTTGTGTAGGAACATCAACTTAAAATC 57.040 29.630 0.00 0.00 38.08 2.17
508 510 8.918202 TGTGTAGGAACATCAACTTAAAATCT 57.082 30.769 0.00 0.00 38.08 2.40
515 517 9.788960 GGAACATCAACTTAAAATCTAACATCC 57.211 33.333 0.00 0.00 0.00 3.51
535 537 8.398878 ACATCCTACAAAATTTAACTTTCGGA 57.601 30.769 0.00 0.00 0.00 4.55
536 538 8.852135 ACATCCTACAAAATTTAACTTTCGGAA 58.148 29.630 0.00 0.00 0.00 4.30
537 539 9.341899 CATCCTACAAAATTTAACTTTCGGAAG 57.658 33.333 0.58 0.58 38.87 3.46
538 540 8.680039 TCCTACAAAATTTAACTTTCGGAAGA 57.320 30.769 11.34 0.00 36.69 2.87
539 541 8.562052 TCCTACAAAATTTAACTTTCGGAAGAC 58.438 33.333 11.34 0.00 41.84 3.01
540 542 8.347035 CCTACAAAATTTAACTTTCGGAAGACA 58.653 33.333 11.34 0.00 41.84 3.41
541 543 9.893305 CTACAAAATTTAACTTTCGGAAGACAT 57.107 29.630 11.34 0.00 41.84 3.06
542 544 8.797266 ACAAAATTTAACTTTCGGAAGACATC 57.203 30.769 11.34 0.00 41.84 3.06
543 545 7.865889 ACAAAATTTAACTTTCGGAAGACATCC 59.134 33.333 11.34 0.00 45.57 3.51
551 553 1.153349 GGAAGACATCCGTGGAGGC 60.153 63.158 0.00 0.00 38.79 4.70
552 554 1.617947 GGAAGACATCCGTGGAGGCT 61.618 60.000 0.00 0.00 38.79 4.58
553 555 0.250513 GAAGACATCCGTGGAGGCTT 59.749 55.000 0.00 5.36 40.77 4.35
554 556 1.480954 GAAGACATCCGTGGAGGCTTA 59.519 52.381 0.00 0.00 40.77 3.09
555 557 1.794714 AGACATCCGTGGAGGCTTAT 58.205 50.000 0.00 0.00 40.77 1.73
556 558 2.958818 AGACATCCGTGGAGGCTTATA 58.041 47.619 0.00 0.00 40.77 0.98
557 559 2.628657 AGACATCCGTGGAGGCTTATAC 59.371 50.000 0.00 0.00 40.77 1.47
558 560 2.364324 GACATCCGTGGAGGCTTATACA 59.636 50.000 0.00 0.00 40.77 2.29
559 561 2.769663 ACATCCGTGGAGGCTTATACAA 59.230 45.455 0.00 0.00 40.77 2.41
560 562 3.199071 ACATCCGTGGAGGCTTATACAAA 59.801 43.478 0.00 0.00 40.77 2.83
561 563 3.985019 TCCGTGGAGGCTTATACAAAA 57.015 42.857 0.00 0.00 40.77 2.44
562 564 4.289238 TCCGTGGAGGCTTATACAAAAA 57.711 40.909 0.00 0.00 40.77 1.94
563 565 4.850680 TCCGTGGAGGCTTATACAAAAAT 58.149 39.130 0.00 0.00 40.77 1.82
564 566 5.991861 TCCGTGGAGGCTTATACAAAAATA 58.008 37.500 0.00 0.00 40.77 1.40
565 567 6.597562 TCCGTGGAGGCTTATACAAAAATAT 58.402 36.000 0.00 0.00 40.77 1.28
572 574 9.011095 GGAGGCTTATACAAAAATATAAGGGTC 57.989 37.037 12.27 0.07 42.07 4.46
634 636 3.084536 TGCCCTCAGATGCAAATTGTA 57.915 42.857 0.00 0.00 33.87 2.41
646 648 5.261209 TGCAAATTGTACTCAGTTTTGCT 57.739 34.783 20.25 0.00 44.81 3.91
691 693 1.412710 TCTGTGAACTTTGGCGTCTCT 59.587 47.619 0.00 0.00 0.00 3.10
693 695 0.235926 GTGAACTTTGGCGTCTCTGC 59.764 55.000 0.00 0.00 0.00 4.26
737 739 3.533079 TACAGGTGGGACCAGGCGA 62.533 63.158 0.00 0.00 41.95 5.54
769 771 3.851403 CCAATTTTATTCAGACCGTTGCG 59.149 43.478 0.00 0.00 0.00 4.85
1004 1010 2.490148 CGGCTCCGAGCTCCATGTA 61.490 63.158 19.68 0.00 41.99 2.29
1041 1047 3.071206 ACCTCGCGGATGCAGAGT 61.071 61.111 6.13 0.00 42.97 3.24
1105 1111 2.490217 CGAGCGTTGATCGGAGGT 59.510 61.111 0.00 0.00 37.82 3.85
1117 1123 3.007940 TGATCGGAGGTTTTCTCACACAT 59.992 43.478 0.00 0.00 44.19 3.21
1218 1224 3.541632 GGGATCTTTGAGCAATCGGTTA 58.458 45.455 0.00 0.00 0.00 2.85
1236 1242 4.201685 CGGTTAATCTGTTCCGTGTTCATC 60.202 45.833 0.00 0.00 38.45 2.92
2029 2042 2.372837 GTGGGTTAGTGGTGTTTAGGGA 59.627 50.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.938585 CACTGGGACTAGAGGTGGAA 58.061 55.000 0.00 0.00 0.00 3.53
16 17 0.991920 CCCAGTTGGTATCACCCACT 59.008 55.000 0.00 0.00 44.19 4.00
31 32 1.830408 CGAGCCCCTCTAGTCCCAG 60.830 68.421 0.00 0.00 0.00 4.45
32 33 2.279073 CGAGCCCCTCTAGTCCCA 59.721 66.667 0.00 0.00 0.00 4.37
48 49 2.262915 GTCAGACTGGGACCTGCG 59.737 66.667 1.81 0.00 0.00 5.18
54 55 3.695606 GCTGGCGTCAGACTGGGA 61.696 66.667 23.78 0.00 43.49 4.37
83 85 2.489938 TACCAACTGGGACTGAATGC 57.510 50.000 0.00 0.00 41.15 3.56
85 87 3.054361 GGTGATACCAACTGGGACTGAAT 60.054 47.826 0.00 0.00 38.42 2.57
88 90 2.403252 GGTGATACCAACTGGGACTG 57.597 55.000 0.00 0.00 38.42 3.51
99 101 1.411612 CTAGTCCCGGTTGGTGATACC 59.588 57.143 0.00 0.00 39.22 2.73
127 129 2.297597 CACCTCTAGTCCCGATTCATCC 59.702 54.545 0.00 0.00 0.00 3.51
129 131 2.959707 GTCACCTCTAGTCCCGATTCAT 59.040 50.000 0.00 0.00 0.00 2.57
130 132 2.376109 GTCACCTCTAGTCCCGATTCA 58.624 52.381 0.00 0.00 0.00 2.57
131 133 1.682323 GGTCACCTCTAGTCCCGATTC 59.318 57.143 0.00 0.00 0.00 2.52
132 134 1.777941 GGTCACCTCTAGTCCCGATT 58.222 55.000 0.00 0.00 0.00 3.34
133 135 0.465824 CGGTCACCTCTAGTCCCGAT 60.466 60.000 0.00 0.00 40.79 4.18
134 136 1.077930 CGGTCACCTCTAGTCCCGA 60.078 63.158 0.00 0.00 40.79 5.14
135 137 1.378250 ACGGTCACCTCTAGTCCCG 60.378 63.158 0.00 0.00 42.90 5.14
136 138 0.611340 ACACGGTCACCTCTAGTCCC 60.611 60.000 0.00 0.00 0.00 4.46
137 139 0.526662 CACACGGTCACCTCTAGTCC 59.473 60.000 0.00 0.00 0.00 3.85
138 140 1.199558 GTCACACGGTCACCTCTAGTC 59.800 57.143 0.00 0.00 0.00 2.59
139 141 1.245732 GTCACACGGTCACCTCTAGT 58.754 55.000 0.00 0.00 0.00 2.57
140 142 1.244816 TGTCACACGGTCACCTCTAG 58.755 55.000 0.00 0.00 0.00 2.43
141 143 1.816835 GATGTCACACGGTCACCTCTA 59.183 52.381 0.00 0.00 0.00 2.43
142 144 0.603569 GATGTCACACGGTCACCTCT 59.396 55.000 0.00 0.00 0.00 3.69
143 145 0.603569 AGATGTCACACGGTCACCTC 59.396 55.000 0.00 0.00 0.00 3.85
144 146 1.000955 GAAGATGTCACACGGTCACCT 59.999 52.381 0.00 0.00 0.00 4.00
145 147 1.429463 GAAGATGTCACACGGTCACC 58.571 55.000 0.00 0.00 0.00 4.02
146 148 1.429463 GGAAGATGTCACACGGTCAC 58.571 55.000 0.00 0.00 0.00 3.67
147 149 0.038618 CGGAAGATGTCACACGGTCA 60.039 55.000 0.00 0.00 0.00 4.02
148 150 1.352156 GCGGAAGATGTCACACGGTC 61.352 60.000 0.00 0.00 0.00 4.79
149 151 1.374252 GCGGAAGATGTCACACGGT 60.374 57.895 0.00 0.00 0.00 4.83
150 152 1.078759 GAGCGGAAGATGTCACACGG 61.079 60.000 0.00 0.00 0.00 4.94
151 153 1.078759 GGAGCGGAAGATGTCACACG 61.079 60.000 0.00 0.00 0.00 4.49
152 154 0.247736 AGGAGCGGAAGATGTCACAC 59.752 55.000 0.00 0.00 0.00 3.82
153 155 1.751351 CTAGGAGCGGAAGATGTCACA 59.249 52.381 0.00 0.00 0.00 3.58
154 156 1.537135 GCTAGGAGCGGAAGATGTCAC 60.537 57.143 0.00 0.00 0.00 3.67
155 157 0.747255 GCTAGGAGCGGAAGATGTCA 59.253 55.000 0.00 0.00 0.00 3.58
156 158 0.032815 GGCTAGGAGCGGAAGATGTC 59.967 60.000 0.00 0.00 43.62 3.06
157 159 0.687757 TGGCTAGGAGCGGAAGATGT 60.688 55.000 0.00 0.00 43.62 3.06
158 160 0.683973 ATGGCTAGGAGCGGAAGATG 59.316 55.000 0.00 0.00 43.62 2.90
159 161 1.071385 CAATGGCTAGGAGCGGAAGAT 59.929 52.381 0.00 0.00 43.62 2.40
160 162 0.465705 CAATGGCTAGGAGCGGAAGA 59.534 55.000 0.00 0.00 43.62 2.87
161 163 0.533755 CCAATGGCTAGGAGCGGAAG 60.534 60.000 0.00 0.00 43.62 3.46
162 164 0.980754 TCCAATGGCTAGGAGCGGAA 60.981 55.000 0.00 0.00 43.62 4.30
163 165 0.980754 TTCCAATGGCTAGGAGCGGA 60.981 55.000 0.00 0.00 43.62 5.54
164 166 0.815615 GTTCCAATGGCTAGGAGCGG 60.816 60.000 0.00 0.00 43.62 5.52
165 167 0.179000 AGTTCCAATGGCTAGGAGCG 59.821 55.000 0.00 0.00 43.62 5.03
166 168 2.019984 CAAGTTCCAATGGCTAGGAGC 58.980 52.381 0.00 0.00 41.46 4.70
167 169 2.239654 TCCAAGTTCCAATGGCTAGGAG 59.760 50.000 0.00 0.00 36.62 3.69
168 170 2.026262 GTCCAAGTTCCAATGGCTAGGA 60.026 50.000 0.00 0.00 36.62 2.94
169 171 2.025887 AGTCCAAGTTCCAATGGCTAGG 60.026 50.000 0.00 0.00 36.62 3.02
170 172 3.356529 AGTCCAAGTTCCAATGGCTAG 57.643 47.619 0.00 0.00 36.62 3.42
171 173 3.844211 ACTAGTCCAAGTTCCAATGGCTA 59.156 43.478 0.00 0.00 36.62 3.93
172 174 2.644798 ACTAGTCCAAGTTCCAATGGCT 59.355 45.455 0.00 0.00 36.62 4.75
173 175 2.749621 CACTAGTCCAAGTTCCAATGGC 59.250 50.000 0.00 0.00 36.62 4.40
174 176 3.244911 ACCACTAGTCCAAGTTCCAATGG 60.245 47.826 0.00 0.00 38.09 3.16
175 177 4.003648 GACCACTAGTCCAAGTTCCAATG 58.996 47.826 0.00 0.00 39.84 2.82
176 178 4.287766 GACCACTAGTCCAAGTTCCAAT 57.712 45.455 0.00 0.00 39.84 3.16
177 179 3.764237 GACCACTAGTCCAAGTTCCAA 57.236 47.619 0.00 0.00 39.84 3.53
188 190 3.288964 CGAGACTAATGGGACCACTAGT 58.711 50.000 11.86 11.86 40.97 2.57
189 191 2.623889 CCGAGACTAATGGGACCACTAG 59.376 54.545 5.36 5.36 32.68 2.57
190 192 2.024655 ACCGAGACTAATGGGACCACTA 60.025 50.000 0.00 0.00 0.00 2.74
191 193 1.273098 ACCGAGACTAATGGGACCACT 60.273 52.381 0.00 0.00 0.00 4.00
192 194 1.136500 GACCGAGACTAATGGGACCAC 59.864 57.143 0.00 0.00 0.00 4.16
193 195 1.481871 GACCGAGACTAATGGGACCA 58.518 55.000 0.00 0.00 0.00 4.02
194 196 0.751452 GGACCGAGACTAATGGGACC 59.249 60.000 0.00 0.00 0.00 4.46
195 197 1.481871 TGGACCGAGACTAATGGGAC 58.518 55.000 0.00 0.00 0.00 4.46
196 198 2.241281 TTGGACCGAGACTAATGGGA 57.759 50.000 0.00 0.00 0.00 4.37
197 199 3.007635 GTTTTGGACCGAGACTAATGGG 58.992 50.000 0.00 0.00 0.00 4.00
198 200 3.933332 GAGTTTTGGACCGAGACTAATGG 59.067 47.826 4.88 0.00 0.00 3.16
199 201 3.612860 CGAGTTTTGGACCGAGACTAATG 59.387 47.826 4.88 0.00 0.00 1.90
200 202 3.368116 CCGAGTTTTGGACCGAGACTAAT 60.368 47.826 4.88 0.00 0.00 1.73
201 203 2.029649 CCGAGTTTTGGACCGAGACTAA 60.030 50.000 4.88 0.00 0.00 2.24
202 204 1.542915 CCGAGTTTTGGACCGAGACTA 59.457 52.381 4.88 0.00 0.00 2.59
203 205 0.317479 CCGAGTTTTGGACCGAGACT 59.683 55.000 4.55 4.55 0.00 3.24
204 206 0.033090 ACCGAGTTTTGGACCGAGAC 59.967 55.000 0.00 0.00 0.00 3.36
205 207 0.316204 GACCGAGTTTTGGACCGAGA 59.684 55.000 0.00 0.00 0.00 4.04
206 208 1.007336 CGACCGAGTTTTGGACCGAG 61.007 60.000 0.00 0.00 0.00 4.63
207 209 1.007038 CGACCGAGTTTTGGACCGA 60.007 57.895 0.00 0.00 0.00 4.69
208 210 2.025418 CCGACCGAGTTTTGGACCG 61.025 63.158 0.00 0.00 0.00 4.79
209 211 1.670083 CCCGACCGAGTTTTGGACC 60.670 63.158 0.00 0.00 0.00 4.46
210 212 0.947660 GTCCCGACCGAGTTTTGGAC 60.948 60.000 0.00 0.00 35.91 4.02
211 213 1.117142 AGTCCCGACCGAGTTTTGGA 61.117 55.000 0.00 0.00 0.00 3.53
212 214 0.604578 TAGTCCCGACCGAGTTTTGG 59.395 55.000 0.00 0.00 0.00 3.28
213 215 2.667473 ATAGTCCCGACCGAGTTTTG 57.333 50.000 0.00 0.00 0.00 2.44
214 216 2.933928 GCAATAGTCCCGACCGAGTTTT 60.934 50.000 0.00 0.00 0.00 2.43
215 217 1.405121 GCAATAGTCCCGACCGAGTTT 60.405 52.381 0.00 0.00 0.00 2.66
216 218 0.175073 GCAATAGTCCCGACCGAGTT 59.825 55.000 0.00 0.00 0.00 3.01
217 219 0.683504 AGCAATAGTCCCGACCGAGT 60.684 55.000 0.00 0.00 0.00 4.18
218 220 0.460311 AAGCAATAGTCCCGACCGAG 59.540 55.000 0.00 0.00 0.00 4.63
219 221 0.458669 GAAGCAATAGTCCCGACCGA 59.541 55.000 0.00 0.00 0.00 4.69
220 222 0.174845 TGAAGCAATAGTCCCGACCG 59.825 55.000 0.00 0.00 0.00 4.79
221 223 1.480954 TCTGAAGCAATAGTCCCGACC 59.519 52.381 0.00 0.00 0.00 4.79
222 224 2.094182 TGTCTGAAGCAATAGTCCCGAC 60.094 50.000 0.00 0.00 0.00 4.79
223 225 2.176045 TGTCTGAAGCAATAGTCCCGA 58.824 47.619 0.00 0.00 0.00 5.14
224 226 2.672961 TGTCTGAAGCAATAGTCCCG 57.327 50.000 0.00 0.00 0.00 5.14
225 227 4.156739 CCTTTTGTCTGAAGCAATAGTCCC 59.843 45.833 0.00 0.00 0.00 4.46
226 228 4.379918 GCCTTTTGTCTGAAGCAATAGTCC 60.380 45.833 0.00 0.00 0.00 3.85
227 229 4.379918 GGCCTTTTGTCTGAAGCAATAGTC 60.380 45.833 0.00 0.00 0.00 2.59
228 230 3.507622 GGCCTTTTGTCTGAAGCAATAGT 59.492 43.478 0.00 0.00 0.00 2.12
229 231 3.760684 AGGCCTTTTGTCTGAAGCAATAG 59.239 43.478 0.00 0.00 0.00 1.73
230 232 3.507233 CAGGCCTTTTGTCTGAAGCAATA 59.493 43.478 0.00 0.00 0.00 1.90
231 233 2.298163 CAGGCCTTTTGTCTGAAGCAAT 59.702 45.455 0.00 0.00 0.00 3.56
232 234 1.682854 CAGGCCTTTTGTCTGAAGCAA 59.317 47.619 0.00 0.00 0.00 3.91
233 235 1.321474 CAGGCCTTTTGTCTGAAGCA 58.679 50.000 0.00 0.00 0.00 3.91
234 236 1.322442 ACAGGCCTTTTGTCTGAAGC 58.678 50.000 0.00 0.00 33.19 3.86
235 237 4.098501 AGAAAACAGGCCTTTTGTCTGAAG 59.901 41.667 21.40 0.68 33.19 3.02
236 238 4.023291 AGAAAACAGGCCTTTTGTCTGAA 58.977 39.130 21.40 0.00 33.19 3.02
237 239 3.631250 AGAAAACAGGCCTTTTGTCTGA 58.369 40.909 21.40 0.00 33.19 3.27
238 240 4.580580 AGTAGAAAACAGGCCTTTTGTCTG 59.419 41.667 27.90 9.26 34.91 3.51
239 241 4.793201 AGTAGAAAACAGGCCTTTTGTCT 58.207 39.130 24.49 24.49 0.00 3.41
240 242 5.763698 ACTAGTAGAAAACAGGCCTTTTGTC 59.236 40.000 13.22 13.22 0.00 3.18
241 243 5.531287 CACTAGTAGAAAACAGGCCTTTTGT 59.469 40.000 0.00 0.00 0.00 2.83
242 244 5.048713 CCACTAGTAGAAAACAGGCCTTTTG 60.049 44.000 0.00 0.00 0.00 2.44
243 245 5.070685 CCACTAGTAGAAAACAGGCCTTTT 58.929 41.667 0.00 1.07 0.00 2.27
244 246 4.349930 TCCACTAGTAGAAAACAGGCCTTT 59.650 41.667 0.00 0.00 0.00 3.11
245 247 3.908103 TCCACTAGTAGAAAACAGGCCTT 59.092 43.478 0.00 0.00 0.00 4.35
246 248 3.517612 TCCACTAGTAGAAAACAGGCCT 58.482 45.455 0.00 0.00 0.00 5.19
247 249 3.975168 TCCACTAGTAGAAAACAGGCC 57.025 47.619 3.59 0.00 0.00 5.19
248 250 5.524281 GCTATTCCACTAGTAGAAAACAGGC 59.476 44.000 7.84 5.02 0.00 4.85
249 251 6.640518 TGCTATTCCACTAGTAGAAAACAGG 58.359 40.000 7.84 0.00 0.00 4.00
250 252 8.547967 TTTGCTATTCCACTAGTAGAAAACAG 57.452 34.615 7.84 6.98 0.00 3.16
251 253 9.162764 GATTTGCTATTCCACTAGTAGAAAACA 57.837 33.333 7.84 4.30 28.49 2.83
252 254 8.613482 GGATTTGCTATTCCACTAGTAGAAAAC 58.387 37.037 7.84 1.91 28.49 2.43
253 255 8.325787 TGGATTTGCTATTCCACTAGTAGAAAA 58.674 33.333 7.84 3.28 37.10 2.29
254 256 7.857456 TGGATTTGCTATTCCACTAGTAGAAA 58.143 34.615 7.84 0.00 37.10 2.52
255 257 7.432148 TGGATTTGCTATTCCACTAGTAGAA 57.568 36.000 6.20 6.20 37.10 2.10
256 258 7.618019 ATGGATTTGCTATTCCACTAGTAGA 57.382 36.000 12.89 0.00 44.49 2.59
257 259 9.950496 ATTATGGATTTGCTATTCCACTAGTAG 57.050 33.333 12.89 0.00 44.49 2.57
259 261 9.646522 AAATTATGGATTTGCTATTCCACTAGT 57.353 29.630 12.89 0.00 44.49 2.57
261 263 9.639563 TGAAATTATGGATTTGCTATTCCACTA 57.360 29.630 12.89 5.88 44.49 2.74
262 264 8.537728 TGAAATTATGGATTTGCTATTCCACT 57.462 30.769 12.89 6.59 44.49 4.00
263 265 9.598517 TTTGAAATTATGGATTTGCTATTCCAC 57.401 29.630 12.89 2.18 44.49 4.02
264 266 9.598517 GTTTGAAATTATGGATTTGCTATTCCA 57.401 29.630 12.98 12.98 45.69 3.53
265 267 9.598517 TGTTTGAAATTATGGATTTGCTATTCC 57.401 29.630 2.58 2.58 38.06 3.01
324 326 9.959749 GTGAACTTTGTTCTTGGAAATAATACA 57.040 29.630 11.06 0.00 0.00 2.29
325 327 9.113876 CGTGAACTTTGTTCTTGGAAATAATAC 57.886 33.333 11.06 0.00 0.00 1.89
326 328 9.058174 TCGTGAACTTTGTTCTTGGAAATAATA 57.942 29.630 11.06 0.00 0.00 0.98
327 329 7.860872 GTCGTGAACTTTGTTCTTGGAAATAAT 59.139 33.333 11.06 0.00 0.00 1.28
328 330 7.148222 TGTCGTGAACTTTGTTCTTGGAAATAA 60.148 33.333 11.06 0.00 0.00 1.40
329 331 6.316640 TGTCGTGAACTTTGTTCTTGGAAATA 59.683 34.615 11.06 0.00 0.00 1.40
330 332 5.124776 TGTCGTGAACTTTGTTCTTGGAAAT 59.875 36.000 11.06 0.00 0.00 2.17
331 333 4.456222 TGTCGTGAACTTTGTTCTTGGAAA 59.544 37.500 11.06 0.32 0.00 3.13
332 334 4.004314 TGTCGTGAACTTTGTTCTTGGAA 58.996 39.130 11.06 0.00 0.00 3.53
333 335 3.601435 TGTCGTGAACTTTGTTCTTGGA 58.399 40.909 11.06 4.11 0.00 3.53
334 336 4.552166 ATGTCGTGAACTTTGTTCTTGG 57.448 40.909 11.06 2.18 0.00 3.61
335 337 9.318041 CTAATAATGTCGTGAACTTTGTTCTTG 57.682 33.333 11.06 4.66 31.65 3.02
336 338 8.504005 CCTAATAATGTCGTGAACTTTGTTCTT 58.496 33.333 11.06 0.42 31.65 2.52
337 339 7.876068 TCCTAATAATGTCGTGAACTTTGTTCT 59.124 33.333 11.06 0.00 31.65 3.01
338 340 7.955864 GTCCTAATAATGTCGTGAACTTTGTTC 59.044 37.037 3.74 3.74 31.65 3.18
339 341 7.094933 GGTCCTAATAATGTCGTGAACTTTGTT 60.095 37.037 0.00 0.00 33.13 2.83
340 342 6.370718 GGTCCTAATAATGTCGTGAACTTTGT 59.629 38.462 0.00 0.00 0.00 2.83
341 343 6.370442 TGGTCCTAATAATGTCGTGAACTTTG 59.630 38.462 0.00 0.00 0.00 2.77
342 344 6.469410 TGGTCCTAATAATGTCGTGAACTTT 58.531 36.000 0.00 0.00 0.00 2.66
343 345 6.045072 TGGTCCTAATAATGTCGTGAACTT 57.955 37.500 0.00 0.00 0.00 2.66
344 346 5.670792 TGGTCCTAATAATGTCGTGAACT 57.329 39.130 0.00 0.00 0.00 3.01
345 347 6.046593 TGATGGTCCTAATAATGTCGTGAAC 58.953 40.000 0.00 0.00 0.00 3.18
346 348 6.228616 TGATGGTCCTAATAATGTCGTGAA 57.771 37.500 0.00 0.00 0.00 3.18
347 349 5.862678 TGATGGTCCTAATAATGTCGTGA 57.137 39.130 0.00 0.00 0.00 4.35
348 350 6.918892 TTTGATGGTCCTAATAATGTCGTG 57.081 37.500 0.00 0.00 0.00 4.35
349 351 7.110155 ACTTTTGATGGTCCTAATAATGTCGT 58.890 34.615 0.00 0.00 0.00 4.34
350 352 7.553881 ACTTTTGATGGTCCTAATAATGTCG 57.446 36.000 0.00 0.00 0.00 4.35
357 359 8.049721 CCTCTCTTTACTTTTGATGGTCCTAAT 58.950 37.037 0.00 0.00 0.00 1.73
358 360 7.236847 TCCTCTCTTTACTTTTGATGGTCCTAA 59.763 37.037 0.00 0.00 0.00 2.69
359 361 6.729100 TCCTCTCTTTACTTTTGATGGTCCTA 59.271 38.462 0.00 0.00 0.00 2.94
360 362 5.548056 TCCTCTCTTTACTTTTGATGGTCCT 59.452 40.000 0.00 0.00 0.00 3.85
361 363 5.805728 TCCTCTCTTTACTTTTGATGGTCC 58.194 41.667 0.00 0.00 0.00 4.46
362 364 7.627300 GCATTCCTCTCTTTACTTTTGATGGTC 60.627 40.741 0.00 0.00 0.00 4.02
363 365 6.151817 GCATTCCTCTCTTTACTTTTGATGGT 59.848 38.462 0.00 0.00 0.00 3.55
364 366 6.558909 GCATTCCTCTCTTTACTTTTGATGG 58.441 40.000 0.00 0.00 0.00 3.51
365 367 6.253746 CGCATTCCTCTCTTTACTTTTGATG 58.746 40.000 0.00 0.00 0.00 3.07
366 368 5.355350 CCGCATTCCTCTCTTTACTTTTGAT 59.645 40.000 0.00 0.00 0.00 2.57
367 369 4.695455 CCGCATTCCTCTCTTTACTTTTGA 59.305 41.667 0.00 0.00 0.00 2.69
368 370 4.695455 TCCGCATTCCTCTCTTTACTTTTG 59.305 41.667 0.00 0.00 0.00 2.44
369 371 4.695928 GTCCGCATTCCTCTCTTTACTTTT 59.304 41.667 0.00 0.00 0.00 2.27
370 372 4.254492 GTCCGCATTCCTCTCTTTACTTT 58.746 43.478 0.00 0.00 0.00 2.66
371 373 3.260884 TGTCCGCATTCCTCTCTTTACTT 59.739 43.478 0.00 0.00 0.00 2.24
372 374 2.832129 TGTCCGCATTCCTCTCTTTACT 59.168 45.455 0.00 0.00 0.00 2.24
373 375 3.247006 TGTCCGCATTCCTCTCTTTAC 57.753 47.619 0.00 0.00 0.00 2.01
374 376 4.081142 TCAATGTCCGCATTCCTCTCTTTA 60.081 41.667 0.00 0.00 42.91 1.85
375 377 3.012518 CAATGTCCGCATTCCTCTCTTT 58.987 45.455 0.00 0.00 42.91 2.52
376 378 2.237143 TCAATGTCCGCATTCCTCTCTT 59.763 45.455 0.00 0.00 42.91 2.85
377 379 1.833630 TCAATGTCCGCATTCCTCTCT 59.166 47.619 0.00 0.00 42.91 3.10
378 380 2.208431 CTCAATGTCCGCATTCCTCTC 58.792 52.381 0.00 0.00 42.91 3.20
379 381 1.745141 GCTCAATGTCCGCATTCCTCT 60.745 52.381 0.00 0.00 42.91 3.69
380 382 0.659957 GCTCAATGTCCGCATTCCTC 59.340 55.000 0.00 0.00 42.91 3.71
381 383 0.035152 TGCTCAATGTCCGCATTCCT 60.035 50.000 0.00 0.00 42.91 3.36
382 384 1.002033 GATGCTCAATGTCCGCATTCC 60.002 52.381 8.27 0.00 43.77 3.01
383 385 1.945394 AGATGCTCAATGTCCGCATTC 59.055 47.619 8.27 4.00 43.77 2.67
384 386 2.048444 AGATGCTCAATGTCCGCATT 57.952 45.000 8.27 0.00 43.77 3.56
385 387 2.916702 TAGATGCTCAATGTCCGCAT 57.083 45.000 7.01 7.01 46.15 4.73
386 388 2.689553 TTAGATGCTCAATGTCCGCA 57.310 45.000 0.00 0.00 38.14 5.69
387 389 2.481952 GGATTAGATGCTCAATGTCCGC 59.518 50.000 0.00 0.00 0.00 5.54
388 390 3.732212 TGGATTAGATGCTCAATGTCCG 58.268 45.455 0.00 0.00 0.00 4.79
389 391 4.965814 TCTGGATTAGATGCTCAATGTCC 58.034 43.478 0.00 0.00 0.00 4.02
390 392 4.451774 GCTCTGGATTAGATGCTCAATGTC 59.548 45.833 0.00 0.00 34.21 3.06
391 393 4.141551 TGCTCTGGATTAGATGCTCAATGT 60.142 41.667 0.00 0.00 34.21 2.71
392 394 4.386711 TGCTCTGGATTAGATGCTCAATG 58.613 43.478 0.00 0.00 34.21 2.82
393 395 4.347292 TCTGCTCTGGATTAGATGCTCAAT 59.653 41.667 0.00 0.00 34.21 2.57
394 396 3.708121 TCTGCTCTGGATTAGATGCTCAA 59.292 43.478 0.00 0.00 34.21 3.02
395 397 3.303049 TCTGCTCTGGATTAGATGCTCA 58.697 45.455 0.00 0.00 34.21 4.26
396 398 4.333913 TTCTGCTCTGGATTAGATGCTC 57.666 45.455 0.00 0.00 34.21 4.26
397 399 4.767578 TTTCTGCTCTGGATTAGATGCT 57.232 40.909 0.00 0.00 34.21 3.79
398 400 4.320348 GCATTTCTGCTCTGGATTAGATGC 60.320 45.833 0.00 0.00 45.32 3.91
399 401 5.359716 GCATTTCTGCTCTGGATTAGATG 57.640 43.478 0.00 0.00 45.32 2.90
420 422 7.990541 TGAAATTTACTATTGATGCATGTGC 57.009 32.000 2.46 0.00 42.50 4.57
481 483 9.959749 GATTTTAAGTTGATGTTCCTACACAAA 57.040 29.630 0.00 0.00 37.03 2.83
482 484 9.349713 AGATTTTAAGTTGATGTTCCTACACAA 57.650 29.630 0.00 0.00 37.03 3.33
483 485 8.918202 AGATTTTAAGTTGATGTTCCTACACA 57.082 30.769 0.00 0.00 37.03 3.72
489 491 9.788960 GGATGTTAGATTTTAAGTTGATGTTCC 57.211 33.333 0.00 0.00 0.00 3.62
509 511 8.852135 TCCGAAAGTTAAATTTTGTAGGATGTT 58.148 29.630 13.15 0.00 0.00 2.71
510 512 8.398878 TCCGAAAGTTAAATTTTGTAGGATGT 57.601 30.769 13.15 0.00 0.00 3.06
511 513 9.341899 CTTCCGAAAGTTAAATTTTGTAGGATG 57.658 33.333 13.15 11.85 0.00 3.51
512 514 9.292195 TCTTCCGAAAGTTAAATTTTGTAGGAT 57.708 29.630 13.15 0.00 33.95 3.24
513 515 8.562052 GTCTTCCGAAAGTTAAATTTTGTAGGA 58.438 33.333 13.15 11.36 33.95 2.94
514 516 8.347035 TGTCTTCCGAAAGTTAAATTTTGTAGG 58.653 33.333 13.15 9.65 33.95 3.18
515 517 9.893305 ATGTCTTCCGAAAGTTAAATTTTGTAG 57.107 29.630 13.15 10.26 33.95 2.74
516 518 9.887406 GATGTCTTCCGAAAGTTAAATTTTGTA 57.113 29.630 13.15 0.00 33.95 2.41
517 519 7.865889 GGATGTCTTCCGAAAGTTAAATTTTGT 59.134 33.333 13.15 0.00 33.93 2.83
518 520 8.227731 GGATGTCTTCCGAAAGTTAAATTTTG 57.772 34.615 8.38 8.38 33.93 2.44
533 535 1.153349 GCCTCCACGGATGTCTTCC 60.153 63.158 0.00 0.00 41.59 3.46
534 536 0.250513 AAGCCTCCACGGATGTCTTC 59.749 55.000 0.00 0.00 33.16 2.87
535 537 1.568504 TAAGCCTCCACGGATGTCTT 58.431 50.000 0.00 0.00 33.16 3.01
536 538 1.794714 ATAAGCCTCCACGGATGTCT 58.205 50.000 0.00 0.00 33.16 3.41
537 539 2.364324 TGTATAAGCCTCCACGGATGTC 59.636 50.000 0.00 0.00 33.16 3.06
538 540 2.394632 TGTATAAGCCTCCACGGATGT 58.605 47.619 0.00 0.00 33.16 3.06
539 541 3.469008 TTGTATAAGCCTCCACGGATG 57.531 47.619 0.00 0.00 33.16 3.51
540 542 4.497291 TTTTGTATAAGCCTCCACGGAT 57.503 40.909 0.00 0.00 33.16 4.18
541 543 3.985019 TTTTGTATAAGCCTCCACGGA 57.015 42.857 0.00 0.00 33.16 4.69
542 544 6.877611 ATATTTTTGTATAAGCCTCCACGG 57.122 37.500 0.00 0.00 0.00 4.94
543 545 8.504005 CCTTATATTTTTGTATAAGCCTCCACG 58.496 37.037 7.74 0.00 40.71 4.94
544 546 8.793592 CCCTTATATTTTTGTATAAGCCTCCAC 58.206 37.037 7.74 0.00 40.71 4.02
545 547 8.507761 ACCCTTATATTTTTGTATAAGCCTCCA 58.492 33.333 7.74 0.00 40.71 3.86
546 548 8.935614 ACCCTTATATTTTTGTATAAGCCTCC 57.064 34.615 7.74 0.00 40.71 4.30
547 549 9.569122 TGACCCTTATATTTTTGTATAAGCCTC 57.431 33.333 7.74 5.59 40.71 4.70
548 550 9.930158 TTGACCCTTATATTTTTGTATAAGCCT 57.070 29.630 7.74 0.00 40.71 4.58
561 563 8.870116 GGCAAAAGGATAATTGACCCTTATATT 58.130 33.333 7.85 0.00 39.21 1.28
562 564 8.422577 GGCAAAAGGATAATTGACCCTTATAT 57.577 34.615 7.85 0.00 39.21 0.86
563 565 7.833285 GGCAAAAGGATAATTGACCCTTATA 57.167 36.000 7.85 0.00 39.21 0.98
564 566 6.731292 GGCAAAAGGATAATTGACCCTTAT 57.269 37.500 7.85 0.00 39.21 1.73
572 574 5.422012 ACCACTAAGGGCAAAAGGATAATTG 59.578 40.000 0.00 0.00 43.89 2.32
634 636 2.028930 CGGACTAGGAGCAAAACTGAGT 60.029 50.000 0.00 0.00 0.00 3.41
646 648 3.755628 GGTGCGCACGGACTAGGA 61.756 66.667 32.35 0.00 36.67 2.94
737 739 2.143876 ATAAAATTGGCCGCCTCTGT 57.856 45.000 11.61 0.00 0.00 3.41
781 783 3.005539 GCTCTCTGCTGGGTCCCA 61.006 66.667 11.11 11.11 38.95 4.37
853 859 2.126307 CTCTCTGTCGCCGTGGTG 60.126 66.667 0.00 0.00 0.00 4.17
880 886 4.421479 CGCTCTCTCGCCGTGGTT 62.421 66.667 0.00 0.00 0.00 3.67
972 978 2.212327 AGCCGAACGGGATCTCAAT 58.788 52.632 15.01 0.00 38.47 2.57
1061 1067 1.902508 ACCATGGACAGACGAAGACAT 59.097 47.619 21.47 0.00 0.00 3.06
1105 1111 3.181459 TGGTTCCTCGATGTGTGAGAAAA 60.181 43.478 0.00 0.00 35.43 2.29
1117 1123 1.667756 CGAACGATTGTGGTTCCTCGA 60.668 52.381 0.00 0.00 40.46 4.04
1218 1224 3.338249 CTGGATGAACACGGAACAGATT 58.662 45.455 0.00 0.00 0.00 2.40
1236 1242 2.787994 AGAAAGAAGCATGTCACCTGG 58.212 47.619 0.00 0.00 0.00 4.45
1366 1372 1.988107 TGCTTCACCCTCCATCTCTTT 59.012 47.619 0.00 0.00 0.00 2.52
1670 1679 8.362639 TGAATTCCTCATTTCTTCTCCTTTTTG 58.637 33.333 2.27 0.00 0.00 2.44
1829 1841 7.774625 ACATTTTCCATGACATTTTGGTCTTTT 59.225 29.630 0.00 0.00 38.61 2.27
2029 2042 0.178068 CCTAGTGGTTACCAGCGCAT 59.822 55.000 11.47 0.00 32.34 4.73
2221 2239 3.490439 TGTCAAACTCTTGCCATCTGA 57.510 42.857 0.00 0.00 32.14 3.27
2296 2314 2.226437 GTGCAAACATTCACGGTCTCAT 59.774 45.455 0.00 0.00 0.00 2.90
2322 2340 6.340522 CAAAACAAAGGAAAACCACTCTCAT 58.659 36.000 0.00 0.00 0.00 2.90
2433 2452 2.154462 CCTAAACCAAGTGCCACTCTG 58.846 52.381 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.