Multiple sequence alignment - TraesCS7B01G464400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G464400 chr7B 100.000 3647 0 0 906 4552 720977532 720981178 0.000000e+00 6735.0
1 TraesCS7B01G464400 chr7B 100.000 589 0 0 1 589 720976627 720977215 0.000000e+00 1088.0
2 TraesCS7B01G464400 chr7B 86.164 318 16 3 4149 4455 668478592 668478892 7.350000e-83 318.0
3 TraesCS7B01G464400 chr7D 91.359 2060 119 27 1573 3611 622712747 622710726 0.000000e+00 2763.0
4 TraesCS7B01G464400 chr7D 90.244 861 61 10 3610 4456 160632623 160633474 0.000000e+00 1103.0
5 TraesCS7B01G464400 chr7D 88.744 613 30 17 1 589 622713963 622713366 0.000000e+00 713.0
6 TraesCS7B01G464400 chr7D 85.985 264 29 5 922 1180 622713372 622713112 4.490000e-70 276.0
7 TraesCS7B01G464400 chr7D 96.939 98 3 0 4455 4552 622710734 622710637 1.010000e-36 165.0
8 TraesCS7B01G464400 chr7A 89.406 2171 162 41 1481 3611 719363557 719365699 0.000000e+00 2673.0
9 TraesCS7B01G464400 chr7A 82.866 642 39 26 1 589 719362562 719363185 1.130000e-140 510.0
10 TraesCS7B01G464400 chr7A 89.928 278 23 3 906 1180 719363181 719363456 2.010000e-93 353.0
11 TraesCS7B01G464400 chr7A 91.837 98 8 0 4455 4552 719365691 719365788 2.210000e-28 137.0
12 TraesCS7B01G464400 chr6B 92.005 863 54 4 3612 4459 610810662 610811524 0.000000e+00 1197.0
13 TraesCS7B01G464400 chr6B 93.452 168 7 1 1190 1353 147089438 147089605 3.520000e-61 246.0
14 TraesCS7B01G464400 chr5B 91.549 852 50 10 3612 4447 661237377 661236532 0.000000e+00 1155.0
15 TraesCS7B01G464400 chr5B 91.549 852 50 10 3612 4447 661238576 661237731 0.000000e+00 1155.0
16 TraesCS7B01G464400 chr5D 91.249 857 54 10 3615 4456 307362231 307361381 0.000000e+00 1147.0
17 TraesCS7B01G464400 chr2A 91.078 863 54 10 3609 4456 582952626 582953480 0.000000e+00 1146.0
18 TraesCS7B01G464400 chr2A 90.551 381 25 3 4087 4456 694456281 694455901 1.140000e-135 494.0
19 TraesCS7B01G464400 chr6D 91.142 858 53 11 3615 4455 136701738 136700887 0.000000e+00 1142.0
20 TraesCS7B01G464400 chr1B 90.592 861 62 7 3612 4456 683466242 683467099 0.000000e+00 1123.0
21 TraesCS7B01G464400 chr4D 89.898 881 75 6 3604 4471 138278062 138277183 0.000000e+00 1122.0
22 TraesCS7B01G464400 chr1A 90.187 856 68 7 3615 4455 226433890 226433036 0.000000e+00 1101.0
23 TraesCS7B01G464400 chr1A 92.727 165 8 1 1192 1352 11628336 11628172 7.610000e-58 235.0
24 TraesCS7B01G464400 chr1A 93.333 45 3 0 1347 1391 551550108 551550064 2.940000e-07 67.6
25 TraesCS7B01G464400 chr4A 94.012 167 6 1 1190 1352 665604120 665604286 2.720000e-62 250.0
26 TraesCS7B01G464400 chr4B 92.814 167 8 1 1192 1354 429241920 429242086 5.890000e-59 239.0
27 TraesCS7B01G464400 chr2B 92.814 167 8 1 1190 1352 472909786 472909620 5.890000e-59 239.0
28 TraesCS7B01G464400 chr3B 92.771 166 8 1 1192 1353 558565426 558565591 2.120000e-58 237.0
29 TraesCS7B01G464400 chr3B 92.727 165 8 1 1192 1352 372838606 372838442 7.610000e-58 235.0
30 TraesCS7B01G464400 chr3B 81.111 90 9 6 1631 1719 586857084 586857002 1.060000e-06 65.8
31 TraesCS7B01G464400 chrUn 92.216 167 9 1 1191 1353 321005422 321005256 2.740000e-57 233.0
32 TraesCS7B01G464400 chr3D 89.247 186 13 4 1192 1370 550509432 550509617 4.580000e-55 226.0
33 TraesCS7B01G464400 chr1D 95.556 45 2 0 1347 1391 459856256 459856212 6.320000e-09 73.1
34 TraesCS7B01G464400 chr3A 88.235 51 4 2 1631 1680 589316358 589316309 4.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G464400 chr7B 720976627 720981178 4551 False 3911.50 6735 100.00000 1 4552 2 chr7B.!!$F2 4551
1 TraesCS7B01G464400 chr7D 160632623 160633474 851 False 1103.00 1103 90.24400 3610 4456 1 chr7D.!!$F1 846
2 TraesCS7B01G464400 chr7D 622710637 622713963 3326 True 979.25 2763 90.75675 1 4552 4 chr7D.!!$R1 4551
3 TraesCS7B01G464400 chr7A 719362562 719365788 3226 False 918.25 2673 88.50925 1 4552 4 chr7A.!!$F1 4551
4 TraesCS7B01G464400 chr6B 610810662 610811524 862 False 1197.00 1197 92.00500 3612 4459 1 chr6B.!!$F2 847
5 TraesCS7B01G464400 chr5B 661236532 661238576 2044 True 1155.00 1155 91.54900 3612 4447 2 chr5B.!!$R1 835
6 TraesCS7B01G464400 chr5D 307361381 307362231 850 True 1147.00 1147 91.24900 3615 4456 1 chr5D.!!$R1 841
7 TraesCS7B01G464400 chr2A 582952626 582953480 854 False 1146.00 1146 91.07800 3609 4456 1 chr2A.!!$F1 847
8 TraesCS7B01G464400 chr6D 136700887 136701738 851 True 1142.00 1142 91.14200 3615 4455 1 chr6D.!!$R1 840
9 TraesCS7B01G464400 chr1B 683466242 683467099 857 False 1123.00 1123 90.59200 3612 4456 1 chr1B.!!$F1 844
10 TraesCS7B01G464400 chr4D 138277183 138278062 879 True 1122.00 1122 89.89800 3604 4471 1 chr4D.!!$R1 867
11 TraesCS7B01G464400 chr1A 226433036 226433890 854 True 1101.00 1101 90.18700 3615 4455 1 chr1A.!!$R2 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 376 0.111253 ACCAAGAAAGAGCCCAGTGG 59.889 55.0 0.63 0.63 0.00 4.00 F
1090 1154 0.033796 CCACCTCCATCCACTGCAAT 60.034 55.0 0.00 0.00 0.00 3.56 F
1202 1269 0.113776 TTGAGGTGTACTCCCTCCGT 59.886 55.0 21.93 1.87 46.64 4.69 F
2709 3010 0.036388 AAGGTGACGGCGATGACAAT 60.036 50.0 16.62 0.00 0.00 2.71 F
2712 3013 0.928229 GTGACGGCGATGACAATACC 59.072 55.0 16.62 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2328 0.239347 CTTGCGACTTTTGGGAGCAG 59.761 55.000 0.0 0.0 39.11 4.24 R
2295 2593 1.070786 GGACCTGGACTTGAACGCA 59.929 57.895 0.0 0.0 0.00 5.24 R
3132 3433 1.515954 CCCAACGATGTACGCTCCT 59.484 57.895 0.0 0.0 46.94 3.69 R
3533 3834 0.104120 TTCGTCATGCCACTATCCCG 59.896 55.000 0.0 0.0 0.00 5.14 R
4288 5810 0.258774 ATTTTGGATACGGCCCAGCT 59.741 50.000 0.0 0.0 42.51 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.899437 ATCATCGACACCTTGGCCGT 61.899 55.000 0.00 0.00 0.00 5.68
44 45 3.041940 GACACCTTGGCCGTCGTG 61.042 66.667 12.84 12.84 0.00 4.35
47 48 4.329545 ACCTTGGCCGTCGTGCAT 62.330 61.111 0.00 0.00 0.00 3.96
48 49 3.803082 CCTTGGCCGTCGTGCATG 61.803 66.667 0.00 0.00 0.00 4.06
74 75 2.640989 CATGTGTGCACGCAAGCT 59.359 55.556 34.42 17.63 45.62 3.74
130 131 1.514657 TACGCACGTCGGCACATAC 60.515 57.895 0.00 0.00 43.86 2.39
171 180 3.008157 TGGAATTACCGGAACTGTGCTAA 59.992 43.478 9.46 0.00 42.61 3.09
215 228 2.918345 GCAAATGGCACGGCACAGA 61.918 57.895 0.00 0.00 43.97 3.41
256 278 3.070302 TGTTGTACATGTGTGTGCTCCTA 59.930 43.478 9.11 0.00 41.01 2.94
261 283 3.820557 ACATGTGTGTGCTCCTACTTTT 58.179 40.909 0.00 0.00 37.14 2.27
262 284 3.815401 ACATGTGTGTGCTCCTACTTTTC 59.185 43.478 0.00 0.00 37.14 2.29
279 301 5.063880 ACTTTTCTGAGTGTTCCGCTTTAT 58.936 37.500 0.00 0.00 0.00 1.40
280 302 6.228258 ACTTTTCTGAGTGTTCCGCTTTATA 58.772 36.000 0.00 0.00 0.00 0.98
281 303 6.879458 ACTTTTCTGAGTGTTCCGCTTTATAT 59.121 34.615 0.00 0.00 0.00 0.86
282 304 6.903883 TTTCTGAGTGTTCCGCTTTATATC 57.096 37.500 0.00 0.00 0.00 1.63
283 305 5.854010 TCTGAGTGTTCCGCTTTATATCT 57.146 39.130 0.00 0.00 0.00 1.98
346 368 1.136336 GTGCGCGTTACCAAGAAAGAG 60.136 52.381 8.43 0.00 0.00 2.85
350 372 1.880646 GCGTTACCAAGAAAGAGCCCA 60.881 52.381 0.00 0.00 0.00 5.36
351 373 2.076863 CGTTACCAAGAAAGAGCCCAG 58.923 52.381 0.00 0.00 0.00 4.45
352 374 2.550208 CGTTACCAAGAAAGAGCCCAGT 60.550 50.000 0.00 0.00 0.00 4.00
354 376 0.111253 ACCAAGAAAGAGCCCAGTGG 59.889 55.000 0.63 0.63 0.00 4.00
433 486 2.011947 TGCCTTGCAAGATCTTCATCG 58.988 47.619 28.05 8.52 34.76 3.84
513 574 4.763793 GGGGTCACATTCATCTTCATATGG 59.236 45.833 2.13 0.00 0.00 2.74
581 642 6.460537 CCAAGTGCACATATACATCTGCAATT 60.461 38.462 21.04 0.00 45.84 2.32
582 643 6.068473 AGTGCACATATACATCTGCAATTG 57.932 37.500 21.04 0.00 41.17 2.32
583 644 5.824097 AGTGCACATATACATCTGCAATTGA 59.176 36.000 21.04 0.00 41.17 2.57
586 647 6.204108 TGCACATATACATCTGCAATTGAGAG 59.796 38.462 10.34 4.05 36.71 3.20
587 648 6.426025 GCACATATACATCTGCAATTGAGAGA 59.574 38.462 10.34 9.74 0.00 3.10
588 649 7.360185 GCACATATACATCTGCAATTGAGAGAG 60.360 40.741 10.34 8.58 0.00 3.20
967 1028 1.984288 GAAGATTCCCCCTCCCACCG 61.984 65.000 0.00 0.00 0.00 4.94
1026 1090 2.615493 GCCCTTTTCATCGTCTCCTTCA 60.615 50.000 0.00 0.00 0.00 3.02
1069 1133 4.262510 GCATCGACACTCGTAAGTTCTAAC 59.737 45.833 0.00 0.00 41.35 2.34
1084 1148 2.467880 TCTAACTCCACCTCCATCCAC 58.532 52.381 0.00 0.00 0.00 4.02
1088 1152 1.538629 TCCACCTCCATCCACTGCA 60.539 57.895 0.00 0.00 0.00 4.41
1090 1154 0.033796 CCACCTCCATCCACTGCAAT 60.034 55.000 0.00 0.00 0.00 3.56
1095 1159 5.132502 CACCTCCATCCACTGCAATAATTA 58.867 41.667 0.00 0.00 0.00 1.40
1101 1166 8.537728 TCCATCCACTGCAATAATTAATTTCT 57.462 30.769 5.91 0.00 0.00 2.52
1193 1260 3.074504 CATGCATGCATTGAGGTGTAC 57.925 47.619 30.32 0.00 33.90 2.90
1194 1261 2.495155 TGCATGCATTGAGGTGTACT 57.505 45.000 18.46 0.00 0.00 2.73
1195 1262 2.358957 TGCATGCATTGAGGTGTACTC 58.641 47.619 18.46 0.00 46.78 2.59
1196 1263 1.672881 GCATGCATTGAGGTGTACTCC 59.327 52.381 14.21 5.81 46.01 3.85
1197 1264 2.292267 CATGCATTGAGGTGTACTCCC 58.708 52.381 10.36 2.27 46.01 4.30
1198 1265 1.656587 TGCATTGAGGTGTACTCCCT 58.343 50.000 10.36 7.33 46.01 4.20
1199 1266 1.555075 TGCATTGAGGTGTACTCCCTC 59.445 52.381 19.49 19.49 46.01 4.30
1200 1267 1.134371 GCATTGAGGTGTACTCCCTCC 60.134 57.143 21.93 9.56 46.64 4.30
1201 1268 1.137086 CATTGAGGTGTACTCCCTCCG 59.863 57.143 21.93 11.63 46.64 4.63
1202 1269 0.113776 TTGAGGTGTACTCCCTCCGT 59.886 55.000 21.93 1.87 46.64 4.69
1203 1270 0.113776 TGAGGTGTACTCCCTCCGTT 59.886 55.000 21.93 1.24 46.64 4.44
1204 1271 0.816373 GAGGTGTACTCCCTCCGTTC 59.184 60.000 16.88 2.80 42.29 3.95
1205 1272 0.614134 AGGTGTACTCCCTCCGTTCC 60.614 60.000 10.36 0.00 0.00 3.62
1206 1273 0.614134 GGTGTACTCCCTCCGTTCCT 60.614 60.000 2.33 0.00 0.00 3.36
1207 1274 1.341383 GGTGTACTCCCTCCGTTCCTA 60.341 57.143 2.33 0.00 0.00 2.94
1208 1275 2.450476 GTGTACTCCCTCCGTTCCTAA 58.550 52.381 0.00 0.00 0.00 2.69
1209 1276 2.827921 GTGTACTCCCTCCGTTCCTAAA 59.172 50.000 0.00 0.00 0.00 1.85
1210 1277 3.450096 GTGTACTCCCTCCGTTCCTAAAT 59.550 47.826 0.00 0.00 0.00 1.40
1211 1278 3.449737 TGTACTCCCTCCGTTCCTAAATG 59.550 47.826 0.00 0.00 0.00 2.32
1212 1279 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
1213 1280 2.500504 ACTCCCTCCGTTCCTAAATGTC 59.499 50.000 0.00 0.00 0.00 3.06
1214 1281 2.766828 CTCCCTCCGTTCCTAAATGTCT 59.233 50.000 0.00 0.00 0.00 3.41
1215 1282 3.178865 TCCCTCCGTTCCTAAATGTCTT 58.821 45.455 0.00 0.00 0.00 3.01
1216 1283 3.585732 TCCCTCCGTTCCTAAATGTCTTT 59.414 43.478 0.00 0.00 0.00 2.52
1217 1284 4.042435 TCCCTCCGTTCCTAAATGTCTTTT 59.958 41.667 0.00 0.00 0.00 2.27
1218 1285 4.765339 CCCTCCGTTCCTAAATGTCTTTTT 59.235 41.667 0.00 0.00 0.00 1.94
1219 1286 5.941647 CCCTCCGTTCCTAAATGTCTTTTTA 59.058 40.000 0.00 0.00 0.00 1.52
1220 1287 6.093633 CCCTCCGTTCCTAAATGTCTTTTTAG 59.906 42.308 0.00 0.00 38.40 1.85
1221 1288 6.877322 CCTCCGTTCCTAAATGTCTTTTTAGA 59.123 38.462 5.71 0.00 40.20 2.10
1222 1289 7.064728 CCTCCGTTCCTAAATGTCTTTTTAGAG 59.935 40.741 5.71 0.00 40.20 2.43
1223 1290 6.877322 TCCGTTCCTAAATGTCTTTTTAGAGG 59.123 38.462 5.71 4.45 40.20 3.69
1224 1291 6.653740 CCGTTCCTAAATGTCTTTTTAGAGGT 59.346 38.462 5.71 0.00 40.20 3.85
1225 1292 7.174426 CCGTTCCTAAATGTCTTTTTAGAGGTT 59.826 37.037 5.71 0.00 40.20 3.50
1226 1293 8.565416 CGTTCCTAAATGTCTTTTTAGAGGTTT 58.435 33.333 5.71 0.00 40.20 3.27
1227 1294 9.894783 GTTCCTAAATGTCTTTTTAGAGGTTTC 57.105 33.333 5.71 0.00 40.20 2.78
1228 1295 9.635404 TTCCTAAATGTCTTTTTAGAGGTTTCA 57.365 29.630 5.71 0.00 40.20 2.69
1229 1296 9.635404 TCCTAAATGTCTTTTTAGAGGTTTCAA 57.365 29.630 5.71 0.00 40.20 2.69
1235 1302 9.750125 ATGTCTTTTTAGAGGTTTCAAATGAAC 57.250 29.630 0.00 0.00 33.13 3.18
1236 1303 8.966868 TGTCTTTTTAGAGGTTTCAAATGAACT 58.033 29.630 0.00 0.00 33.13 3.01
1242 1309 8.740123 TTAGAGGTTTCAAATGAACTACAACA 57.260 30.769 0.00 0.00 33.13 3.33
1243 1310 7.823745 AGAGGTTTCAAATGAACTACAACAT 57.176 32.000 0.00 0.00 33.13 2.71
1244 1311 8.918202 AGAGGTTTCAAATGAACTACAACATA 57.082 30.769 0.00 0.00 33.13 2.29
1245 1312 8.784043 AGAGGTTTCAAATGAACTACAACATAC 58.216 33.333 0.00 0.00 33.13 2.39
1246 1313 7.581476 AGGTTTCAAATGAACTACAACATACG 58.419 34.615 0.00 0.00 33.13 3.06
1247 1314 6.799925 GGTTTCAAATGAACTACAACATACGG 59.200 38.462 0.00 0.00 33.13 4.02
1248 1315 7.308109 GGTTTCAAATGAACTACAACATACGGA 60.308 37.037 0.00 0.00 33.13 4.69
1249 1316 7.915293 TTCAAATGAACTACAACATACGGAT 57.085 32.000 0.00 0.00 0.00 4.18
1250 1317 7.302350 TCAAATGAACTACAACATACGGATG 57.698 36.000 5.94 5.94 39.16 3.51
1252 1319 8.035984 TCAAATGAACTACAACATACGGATGTA 58.964 33.333 15.10 0.00 45.93 2.29
1253 1320 8.826710 CAAATGAACTACAACATACGGATGTAT 58.173 33.333 15.10 8.21 45.93 2.29
1260 1327 9.511272 ACTACAACATACGGATGTATATAGACA 57.489 33.333 23.06 2.07 45.93 3.41
1293 1360 6.970484 AGTGTGGATTCACTCATTTTGTTAC 58.030 36.000 5.55 0.00 44.07 2.50
1294 1361 5.851177 GTGTGGATTCACTCATTTTGTTACG 59.149 40.000 5.55 0.00 43.94 3.18
1295 1362 5.529430 TGTGGATTCACTCATTTTGTTACGT 59.471 36.000 5.55 0.00 43.94 3.57
1296 1363 6.706716 TGTGGATTCACTCATTTTGTTACGTA 59.293 34.615 5.55 0.00 43.94 3.57
1297 1364 7.389330 TGTGGATTCACTCATTTTGTTACGTAT 59.611 33.333 5.55 0.00 43.94 3.06
1298 1365 7.692291 GTGGATTCACTCATTTTGTTACGTATG 59.308 37.037 0.00 0.00 40.58 2.39
1299 1366 7.389330 TGGATTCACTCATTTTGTTACGTATGT 59.611 33.333 0.00 0.00 0.00 2.29
1300 1367 8.875803 GGATTCACTCATTTTGTTACGTATGTA 58.124 33.333 0.00 0.00 0.00 2.29
1301 1368 9.901724 GATTCACTCATTTTGTTACGTATGTAG 57.098 33.333 0.00 0.00 0.00 2.74
1302 1369 8.821147 TTCACTCATTTTGTTACGTATGTAGT 57.179 30.769 0.00 0.00 0.00 2.73
1303 1370 8.456904 TCACTCATTTTGTTACGTATGTAGTC 57.543 34.615 0.00 0.00 0.00 2.59
1304 1371 7.543172 TCACTCATTTTGTTACGTATGTAGTCC 59.457 37.037 0.00 0.00 0.00 3.85
1305 1372 6.815142 ACTCATTTTGTTACGTATGTAGTCCC 59.185 38.462 0.00 0.00 0.00 4.46
1306 1373 6.938507 TCATTTTGTTACGTATGTAGTCCCT 58.061 36.000 0.00 0.00 0.00 4.20
1307 1374 7.388437 TCATTTTGTTACGTATGTAGTCCCTT 58.612 34.615 0.00 0.00 0.00 3.95
1308 1375 7.332430 TCATTTTGTTACGTATGTAGTCCCTTG 59.668 37.037 0.00 0.00 0.00 3.61
1309 1376 5.726980 TTGTTACGTATGTAGTCCCTTGT 57.273 39.130 0.00 0.00 0.00 3.16
1310 1377 5.726980 TGTTACGTATGTAGTCCCTTGTT 57.273 39.130 0.00 0.00 0.00 2.83
1311 1378 5.472148 TGTTACGTATGTAGTCCCTTGTTG 58.528 41.667 0.00 0.00 0.00 3.33
1312 1379 5.243507 TGTTACGTATGTAGTCCCTTGTTGA 59.756 40.000 0.00 0.00 0.00 3.18
1313 1380 4.877378 ACGTATGTAGTCCCTTGTTGAA 57.123 40.909 0.00 0.00 0.00 2.69
1314 1381 5.217978 ACGTATGTAGTCCCTTGTTGAAA 57.782 39.130 0.00 0.00 0.00 2.69
1315 1382 5.801380 ACGTATGTAGTCCCTTGTTGAAAT 58.199 37.500 0.00 0.00 0.00 2.17
1316 1383 5.873164 ACGTATGTAGTCCCTTGTTGAAATC 59.127 40.000 0.00 0.00 0.00 2.17
1317 1384 6.106673 CGTATGTAGTCCCTTGTTGAAATCT 58.893 40.000 0.00 0.00 0.00 2.40
1318 1385 6.255887 CGTATGTAGTCCCTTGTTGAAATCTC 59.744 42.308 0.00 0.00 0.00 2.75
1319 1386 5.825593 TGTAGTCCCTTGTTGAAATCTCT 57.174 39.130 0.00 0.00 0.00 3.10
1320 1387 6.928348 TGTAGTCCCTTGTTGAAATCTCTA 57.072 37.500 0.00 0.00 0.00 2.43
1321 1388 7.311092 TGTAGTCCCTTGTTGAAATCTCTAA 57.689 36.000 0.00 0.00 0.00 2.10
1322 1389 7.741785 TGTAGTCCCTTGTTGAAATCTCTAAA 58.258 34.615 0.00 0.00 0.00 1.85
1323 1390 8.215050 TGTAGTCCCTTGTTGAAATCTCTAAAA 58.785 33.333 0.00 0.00 0.00 1.52
1324 1391 9.063615 GTAGTCCCTTGTTGAAATCTCTAAAAA 57.936 33.333 0.00 0.00 0.00 1.94
1325 1392 8.171164 AGTCCCTTGTTGAAATCTCTAAAAAG 57.829 34.615 0.00 0.00 0.00 2.27
1326 1393 7.998964 AGTCCCTTGTTGAAATCTCTAAAAAGA 59.001 33.333 0.00 0.00 0.00 2.52
1327 1394 8.076781 GTCCCTTGTTGAAATCTCTAAAAAGAC 58.923 37.037 0.00 0.00 0.00 3.01
1328 1395 7.998964 TCCCTTGTTGAAATCTCTAAAAAGACT 59.001 33.333 0.00 0.00 0.00 3.24
1329 1396 8.633561 CCCTTGTTGAAATCTCTAAAAAGACTT 58.366 33.333 0.00 0.00 0.00 3.01
1346 1413 7.625828 AAAGACTTATATTTTGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
1347 1414 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1348 1415 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1349 1416 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1350 1417 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1351 1418 6.384886 ACTTATATTTTGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1352 1419 5.906772 ATATTTTGGAACGGAGGGAGTAT 57.093 39.130 0.00 0.00 0.00 2.12
1353 1420 3.343941 TTTTGGAACGGAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
1354 1421 1.946984 TTGGAACGGAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
1355 1422 1.191535 TGGAACGGAGGGAGTATGTG 58.808 55.000 0.00 0.00 0.00 3.21
1356 1423 0.464452 GGAACGGAGGGAGTATGTGG 59.536 60.000 0.00 0.00 0.00 4.17
1357 1424 1.192428 GAACGGAGGGAGTATGTGGT 58.808 55.000 0.00 0.00 0.00 4.16
1358 1425 2.381911 GAACGGAGGGAGTATGTGGTA 58.618 52.381 0.00 0.00 0.00 3.25
1359 1426 2.537633 ACGGAGGGAGTATGTGGTAA 57.462 50.000 0.00 0.00 0.00 2.85
1360 1427 2.105766 ACGGAGGGAGTATGTGGTAAC 58.894 52.381 0.00 0.00 0.00 2.50
1361 1428 1.411612 CGGAGGGAGTATGTGGTAACC 59.588 57.143 0.00 0.00 0.00 2.85
1362 1429 2.474112 GGAGGGAGTATGTGGTAACCA 58.526 52.381 0.00 0.00 0.00 3.67
1363 1430 2.841881 GGAGGGAGTATGTGGTAACCAA 59.158 50.000 0.00 0.00 34.18 3.67
1364 1431 3.458487 GGAGGGAGTATGTGGTAACCAAT 59.542 47.826 0.00 0.00 34.18 3.16
1365 1432 4.444449 GGAGGGAGTATGTGGTAACCAATC 60.444 50.000 0.00 0.00 34.18 2.67
1366 1433 4.371681 AGGGAGTATGTGGTAACCAATCT 58.628 43.478 0.00 0.00 34.18 2.40
1367 1434 4.409247 AGGGAGTATGTGGTAACCAATCTC 59.591 45.833 0.00 0.00 34.18 2.75
1368 1435 4.163458 GGGAGTATGTGGTAACCAATCTCA 59.837 45.833 0.00 0.00 34.18 3.27
1369 1436 5.338871 GGGAGTATGTGGTAACCAATCTCAA 60.339 44.000 0.00 0.00 34.18 3.02
1370 1437 6.177610 GGAGTATGTGGTAACCAATCTCAAA 58.822 40.000 0.00 0.00 34.18 2.69
1371 1438 6.657541 GGAGTATGTGGTAACCAATCTCAAAA 59.342 38.462 0.00 0.00 34.18 2.44
1372 1439 7.361799 GGAGTATGTGGTAACCAATCTCAAAAC 60.362 40.741 0.00 0.00 34.18 2.43
1373 1440 7.001674 AGTATGTGGTAACCAATCTCAAAACA 58.998 34.615 0.00 0.00 34.18 2.83
1374 1441 6.723298 ATGTGGTAACCAATCTCAAAACAA 57.277 33.333 0.00 0.00 34.18 2.83
1375 1442 6.531503 TGTGGTAACCAATCTCAAAACAAA 57.468 33.333 0.00 0.00 34.18 2.83
1376 1443 6.334202 TGTGGTAACCAATCTCAAAACAAAC 58.666 36.000 0.00 0.00 34.18 2.93
1377 1444 6.071334 TGTGGTAACCAATCTCAAAACAAACA 60.071 34.615 0.00 0.00 34.18 2.83
1378 1445 6.814146 GTGGTAACCAATCTCAAAACAAACAA 59.186 34.615 0.00 0.00 34.18 2.83
1379 1446 7.494298 GTGGTAACCAATCTCAAAACAAACAAT 59.506 33.333 0.00 0.00 34.18 2.71
1380 1447 7.493971 TGGTAACCAATCTCAAAACAAACAATG 59.506 33.333 0.00 0.00 0.00 2.82
1381 1448 7.494298 GGTAACCAATCTCAAAACAAACAATGT 59.506 33.333 0.00 0.00 46.82 2.71
1382 1449 7.538303 AACCAATCTCAAAACAAACAATGTC 57.462 32.000 0.00 0.00 42.99 3.06
1383 1450 6.638610 ACCAATCTCAAAACAAACAATGTCA 58.361 32.000 0.00 0.00 42.99 3.58
1384 1451 7.102346 ACCAATCTCAAAACAAACAATGTCAA 58.898 30.769 0.00 0.00 42.99 3.18
1385 1452 7.064490 ACCAATCTCAAAACAAACAATGTCAAC 59.936 33.333 0.00 0.00 42.99 3.18
1386 1453 7.064371 CCAATCTCAAAACAAACAATGTCAACA 59.936 33.333 0.00 0.00 42.99 3.33
1387 1454 8.441608 CAATCTCAAAACAAACAATGTCAACAA 58.558 29.630 0.00 0.00 42.99 2.83
1388 1455 7.953158 TCTCAAAACAAACAATGTCAACAAA 57.047 28.000 0.00 0.00 42.99 2.83
1389 1456 8.370493 TCTCAAAACAAACAATGTCAACAAAA 57.630 26.923 0.00 0.00 42.99 2.44
1390 1457 8.830580 TCTCAAAACAAACAATGTCAACAAAAA 58.169 25.926 0.00 0.00 42.99 1.94
1391 1458 9.609950 CTCAAAACAAACAATGTCAACAAAAAT 57.390 25.926 0.00 0.00 42.99 1.82
1392 1459 9.390795 TCAAAACAAACAATGTCAACAAAAATG 57.609 25.926 0.00 0.00 42.99 2.32
1393 1460 7.793907 AAACAAACAATGTCAACAAAAATGC 57.206 28.000 0.00 0.00 42.99 3.56
1394 1461 6.492007 ACAAACAATGTCAACAAAAATGCA 57.508 29.167 0.00 0.00 37.96 3.96
1395 1462 7.086230 ACAAACAATGTCAACAAAAATGCAT 57.914 28.000 0.00 0.00 37.96 3.96
1396 1463 6.967767 ACAAACAATGTCAACAAAAATGCATG 59.032 30.769 0.00 0.00 37.96 4.06
1397 1464 5.098218 ACAATGTCAACAAAAATGCATGC 57.902 34.783 11.82 11.82 0.00 4.06
1398 1465 4.575236 ACAATGTCAACAAAAATGCATGCA 59.425 33.333 25.04 25.04 0.00 3.96
1399 1466 5.239744 ACAATGTCAACAAAAATGCATGCAT 59.760 32.000 27.46 27.46 38.46 3.96
1425 1492 4.154195 AGGCTTTACGCTTGAAGTAATGTG 59.846 41.667 0.00 0.00 39.13 3.21
1461 1549 6.238049 CGGTGACATTTTTCTTTTGCAATGAA 60.238 34.615 0.00 5.62 32.07 2.57
1473 1561 1.225855 GCAATGAACGTCAGGTGACA 58.774 50.000 10.63 0.00 44.99 3.58
1474 1562 1.069906 GCAATGAACGTCAGGTGACAC 60.070 52.381 10.63 0.00 44.99 3.67
1475 1563 1.192312 CAATGAACGTCAGGTGACACG 59.808 52.381 10.63 0.66 44.99 4.49
1523 1611 6.035327 GCAAAATTATCACTGGAATCAAGTGC 59.965 38.462 12.82 0.00 33.93 4.40
1546 1634 7.252708 TGCTAATTAAGAAGCACATCATGTTG 58.747 34.615 9.77 2.12 43.56 3.33
1548 1636 5.909621 ATTAAGAAGCACATCATGTTGCT 57.090 34.783 11.78 11.78 36.70 3.91
1573 1661 7.118496 TCAAGGTTTTGAATTCCAGCTTTAA 57.882 32.000 2.27 0.00 40.26 1.52
1576 1664 8.839343 CAAGGTTTTGAATTCCAGCTTTAAAAT 58.161 29.630 2.27 0.00 36.36 1.82
1582 1670 9.796120 TTTGAATTCCAGCTTTAAAATATACCG 57.204 29.630 2.27 0.00 0.00 4.02
1584 1672 5.761165 TTCCAGCTTTAAAATATACCGGC 57.239 39.130 0.00 0.00 0.00 6.13
1587 1675 4.215613 CCAGCTTTAAAATATACCGGCCTC 59.784 45.833 0.00 0.00 0.00 4.70
1591 1848 5.390567 GCTTTAAAATATACCGGCCTCGATG 60.391 44.000 0.00 0.00 39.00 3.84
1646 1909 4.599047 ATCGGTTTTCATTTCAGCCAAA 57.401 36.364 0.00 0.00 0.00 3.28
1776 2043 8.233868 TGTTATGACAGAACCGATGTTATTTTG 58.766 33.333 10.31 0.00 33.97 2.44
1785 2052 6.930667 ACCGATGTTATTTTGGTATGTACC 57.069 37.500 2.18 2.18 46.62 3.34
1825 2095 7.658179 TGCAAATTTTTGATAATTTACGCCA 57.342 28.000 7.21 0.00 40.55 5.69
1831 2101 7.659652 TTTTTGATAATTTACGCCAAAAGGG 57.340 32.000 0.00 0.00 37.79 3.95
1939 2234 2.993471 GCCATGCGTGTTTCCCTGG 61.993 63.158 4.96 0.00 0.00 4.45
2082 2377 4.825085 TCTTGACGCCTTGTATTTTCCTTT 59.175 37.500 0.00 0.00 0.00 3.11
2126 2421 3.822594 ATTATTTCTTGACGCGTTGCA 57.177 38.095 15.53 4.47 0.00 4.08
2127 2422 3.822594 TTATTTCTTGACGCGTTGCAT 57.177 38.095 15.53 2.87 0.00 3.96
2129 2424 2.483583 TTTCTTGACGCGTTGCATTT 57.516 40.000 15.53 0.00 0.00 2.32
2130 2425 2.483583 TTCTTGACGCGTTGCATTTT 57.516 40.000 15.53 0.00 0.00 1.82
2131 2426 2.031037 TCTTGACGCGTTGCATTTTC 57.969 45.000 15.53 0.00 0.00 2.29
2132 2427 1.052287 CTTGACGCGTTGCATTTTCC 58.948 50.000 15.53 0.00 0.00 3.13
2133 2428 0.382158 TTGACGCGTTGCATTTTCCA 59.618 45.000 15.53 0.00 0.00 3.53
2134 2429 0.595588 TGACGCGTTGCATTTTCCAT 59.404 45.000 15.53 0.00 0.00 3.41
2135 2430 1.807142 TGACGCGTTGCATTTTCCATA 59.193 42.857 15.53 0.00 0.00 2.74
2136 2431 2.421775 TGACGCGTTGCATTTTCCATAT 59.578 40.909 15.53 0.00 0.00 1.78
2137 2432 3.623510 TGACGCGTTGCATTTTCCATATA 59.376 39.130 15.53 0.00 0.00 0.86
2138 2433 3.947626 ACGCGTTGCATTTTCCATATAC 58.052 40.909 5.58 0.00 0.00 1.47
2146 2441 7.095060 CGTTGCATTTTCCATATACTATGCTCT 60.095 37.037 0.00 0.00 39.19 4.09
2238 2533 3.050876 AGCAGCTCGTCGTCGTCT 61.051 61.111 1.33 0.00 38.33 4.18
2241 2536 1.794003 CAGCTCGTCGTCGTCTGTG 60.794 63.158 14.47 2.21 38.33 3.66
2246 2541 1.507302 CGTCGTCGTCTGTGACTCG 60.507 63.158 0.00 0.00 36.71 4.18
2295 2593 3.130160 GACGAGGAGTACGGCCGT 61.130 66.667 36.01 36.01 36.08 5.68
2363 2661 4.586618 CCTCAGGCAGACGTTCAG 57.413 61.111 0.00 0.00 0.00 3.02
2370 2668 1.803519 GCAGACGTTCAGGCTCTCG 60.804 63.158 0.00 0.00 34.57 4.04
2373 2671 3.759544 ACGTTCAGGCTCTCGTCA 58.240 55.556 2.99 0.00 30.71 4.35
2456 2757 2.271800 GTGCTCCTACACAATTCTCGG 58.728 52.381 0.00 0.00 40.40 4.63
2478 2779 2.303549 ATTTCGAGCTGGAGCCGAGG 62.304 60.000 0.00 0.00 41.80 4.63
2709 3010 0.036388 AAGGTGACGGCGATGACAAT 60.036 50.000 16.62 0.00 0.00 2.71
2712 3013 0.928229 GTGACGGCGATGACAATACC 59.072 55.000 16.62 0.00 0.00 2.73
2717 3018 1.745232 GGCGATGACAATACCACCAA 58.255 50.000 0.00 0.00 0.00 3.67
2724 3025 1.063972 CAATACCACCAATGCCGCG 59.936 57.895 0.00 0.00 0.00 6.46
3279 3580 4.388499 GAAGAGGTGGCGCGGGAA 62.388 66.667 8.83 0.00 0.00 3.97
3460 3761 7.386851 CCAAGACTAGTTCATTTTAGTGGAGA 58.613 38.462 0.00 0.00 30.58 3.71
3496 3797 9.840427 GCTAGTGTGTTGTTGTTGATTAATTAT 57.160 29.630 0.00 0.00 0.00 1.28
3530 3831 9.180678 GTTTATGTGTAGTTTTTCCTTGTGATG 57.819 33.333 0.00 0.00 0.00 3.07
3533 3834 4.976116 GTGTAGTTTTTCCTTGTGATGCAC 59.024 41.667 0.00 0.00 34.56 4.57
3650 3955 4.081642 CGGAAATGGGTATCAGTATCGGAT 60.082 45.833 0.00 0.00 0.00 4.18
3657 3962 6.014012 TGGGTATCAGTATCGGATCAATACA 58.986 40.000 15.79 1.94 33.00 2.29
3805 4117 5.048504 CCTGTCTTCTTTAGCAAATGAGCAA 60.049 40.000 0.00 0.00 36.85 3.91
3874 4187 4.668138 TTCTATTTAGTGTTGCCCCCTT 57.332 40.909 0.00 0.00 0.00 3.95
3875 4188 4.668138 TCTATTTAGTGTTGCCCCCTTT 57.332 40.909 0.00 0.00 0.00 3.11
3878 4191 4.668138 ATTTAGTGTTGCCCCCTTTAGA 57.332 40.909 0.00 0.00 0.00 2.10
3937 4250 5.493809 GTGCCCTTAGATTTGTAGGTACAA 58.506 41.667 0.00 0.00 43.80 2.41
3963 4276 0.034670 GTTCAGCAGGAGGAGCCATT 60.035 55.000 0.00 0.00 40.02 3.16
3978 4297 2.438763 AGCCATTTGGAGGAGATGAGAG 59.561 50.000 0.00 0.00 37.39 3.20
4058 4378 6.154363 CAGGAGAAAGGAGAAGAGAAGTGTAT 59.846 42.308 0.00 0.00 0.00 2.29
4213 5734 3.245622 GGGAGGGAGGAAAGAAAATTGGA 60.246 47.826 0.00 0.00 0.00 3.53
4230 5751 0.784495 GGAAGGAAAAGGAAGGGGGT 59.216 55.000 0.00 0.00 0.00 4.95
4263 5785 3.100671 AGGGTTGCTGTCTACCTCTTAG 58.899 50.000 0.00 0.00 38.05 2.18
4288 5810 3.027412 GGCTGAGTGGTCTCTTAGATGA 58.973 50.000 0.00 0.00 40.98 2.92
4459 5992 3.764434 AGTATCGGTGCATTCGAGGATAT 59.236 43.478 17.51 6.14 40.09 1.63
4460 5993 2.438868 TCGGTGCATTCGAGGATATG 57.561 50.000 10.38 0.00 32.51 1.78
4463 5996 2.029918 CGGTGCATTCGAGGATATGAGA 60.030 50.000 6.57 0.00 0.00 3.27
4465 5998 3.243873 GGTGCATTCGAGGATATGAGACA 60.244 47.826 0.00 0.00 0.00 3.41
4471 6004 2.887783 TCGAGGATATGAGACAAGCTCC 59.112 50.000 0.00 0.00 43.26 4.70
4472 6005 2.625314 CGAGGATATGAGACAAGCTCCA 59.375 50.000 0.00 0.00 43.26 3.86
4473 6006 3.551863 CGAGGATATGAGACAAGCTCCAC 60.552 52.174 0.00 0.00 43.26 4.02
4511 6044 1.200020 GGCATTCCTCCGAAAGTGTTG 59.800 52.381 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.512484 GCTGTTCTGGAAAGAGATTAGCT 58.488 43.478 0.00 0.00 32.57 3.32
72 73 3.625313 GGCTGTTCTGGAAAGAGATTAGC 59.375 47.826 0.00 0.00 33.64 3.09
73 74 3.868077 CGGCTGTTCTGGAAAGAGATTAG 59.132 47.826 0.00 0.00 0.00 1.73
74 75 3.513912 TCGGCTGTTCTGGAAAGAGATTA 59.486 43.478 0.00 0.00 0.00 1.75
215 228 0.321671 ATATATTGGCTCGCGGCTGT 59.678 50.000 17.07 7.87 41.46 4.40
223 236 7.012327 ACACACATGTACAACATATATTGGCTC 59.988 37.037 0.00 0.00 36.53 4.70
227 240 7.696755 AGCACACACATGTACAACATATATTG 58.303 34.615 0.00 0.00 36.53 1.90
256 278 2.622064 AGCGGAACACTCAGAAAAGT 57.378 45.000 0.00 0.00 0.00 2.66
261 283 5.854010 AGATATAAAGCGGAACACTCAGA 57.146 39.130 0.00 0.00 0.00 3.27
262 284 6.809196 GGATAGATATAAAGCGGAACACTCAG 59.191 42.308 0.00 0.00 0.00 3.35
279 301 2.302733 ACGGCATGCACATGGATAGATA 59.697 45.455 21.36 0.00 39.16 1.98
280 302 1.072806 ACGGCATGCACATGGATAGAT 59.927 47.619 21.36 0.00 39.16 1.98
281 303 0.469494 ACGGCATGCACATGGATAGA 59.531 50.000 21.36 0.00 39.16 1.98
282 304 0.589708 CACGGCATGCACATGGATAG 59.410 55.000 21.36 1.31 39.16 2.08
283 305 0.107263 ACACGGCATGCACATGGATA 60.107 50.000 21.36 0.00 39.16 2.59
363 416 8.598075 GCCAAAATGATGAATGAAGACATAAAC 58.402 33.333 0.00 0.00 35.50 2.01
428 481 1.137479 GTGTTAACCCGGATCCGATGA 59.863 52.381 35.42 13.49 42.83 2.92
433 486 2.285977 GTCATGTGTTAACCCGGATCC 58.714 52.381 0.73 0.00 0.00 3.36
468 521 6.728164 CCCCCTCTCACATATATATAGGGATG 59.272 46.154 21.97 12.63 44.18 3.51
513 574 6.119144 AGCAACGAATGTATTTGGACATAC 57.881 37.500 0.00 0.00 39.16 2.39
967 1028 1.743394 CTCAAATTAACCGGGAGCACC 59.257 52.381 6.32 0.00 0.00 5.01
973 1034 4.020543 TCAAATCCCTCAAATTAACCGGG 58.979 43.478 6.32 0.00 36.21 5.73
1069 1133 1.222936 GCAGTGGATGGAGGTGGAG 59.777 63.158 0.00 0.00 0.00 3.86
1131 1196 5.080337 TCTATGACATCCCTAGCTCGATTT 58.920 41.667 0.00 0.00 0.00 2.17
1132 1197 4.667573 TCTATGACATCCCTAGCTCGATT 58.332 43.478 0.00 0.00 0.00 3.34
1133 1198 4.308526 TCTATGACATCCCTAGCTCGAT 57.691 45.455 0.00 0.00 0.00 3.59
1135 1200 3.761218 ACATCTATGACATCCCTAGCTCG 59.239 47.826 0.00 0.00 0.00 5.03
1136 1201 5.736951 AACATCTATGACATCCCTAGCTC 57.263 43.478 0.00 0.00 0.00 4.09
1143 1208 7.615582 TCAGAACAAAACATCTATGACATCC 57.384 36.000 0.00 0.00 0.00 3.51
1186 1253 0.614134 GGAACGGAGGGAGTACACCT 60.614 60.000 9.34 9.01 42.18 4.00
1187 1254 0.614134 AGGAACGGAGGGAGTACACC 60.614 60.000 0.00 0.00 0.00 4.16
1188 1255 2.134789 TAGGAACGGAGGGAGTACAC 57.865 55.000 0.00 0.00 0.00 2.90
1189 1256 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
1190 1257 3.450096 ACATTTAGGAACGGAGGGAGTAC 59.550 47.826 0.00 0.00 0.00 2.73
1191 1258 3.703052 GACATTTAGGAACGGAGGGAGTA 59.297 47.826 0.00 0.00 0.00 2.59
1192 1259 2.500504 GACATTTAGGAACGGAGGGAGT 59.499 50.000 0.00 0.00 0.00 3.85
1193 1260 2.766828 AGACATTTAGGAACGGAGGGAG 59.233 50.000 0.00 0.00 0.00 4.30
1194 1261 2.829023 AGACATTTAGGAACGGAGGGA 58.171 47.619 0.00 0.00 0.00 4.20
1195 1262 3.629142 AAGACATTTAGGAACGGAGGG 57.371 47.619 0.00 0.00 0.00 4.30
1196 1263 5.959618 AAAAAGACATTTAGGAACGGAGG 57.040 39.130 0.00 0.00 0.00 4.30
1197 1264 7.064728 CCTCTAAAAAGACATTTAGGAACGGAG 59.935 40.741 6.89 0.00 41.25 4.63
1198 1265 6.877322 CCTCTAAAAAGACATTTAGGAACGGA 59.123 38.462 6.89 0.00 41.25 4.69
1199 1266 6.653740 ACCTCTAAAAAGACATTTAGGAACGG 59.346 38.462 6.89 5.80 41.25 4.44
1200 1267 7.668525 ACCTCTAAAAAGACATTTAGGAACG 57.331 36.000 6.89 0.00 41.25 3.95
1201 1268 9.894783 GAAACCTCTAAAAAGACATTTAGGAAC 57.105 33.333 6.89 0.00 41.25 3.62
1202 1269 9.635404 TGAAACCTCTAAAAAGACATTTAGGAA 57.365 29.630 6.89 0.00 41.25 3.36
1203 1270 9.635404 TTGAAACCTCTAAAAAGACATTTAGGA 57.365 29.630 6.89 0.00 41.25 2.94
1209 1276 9.750125 GTTCATTTGAAACCTCTAAAAAGACAT 57.250 29.630 0.00 0.00 35.58 3.06
1210 1277 8.966868 AGTTCATTTGAAACCTCTAAAAAGACA 58.033 29.630 0.00 0.00 35.58 3.41
1216 1283 9.179909 TGTTGTAGTTCATTTGAAACCTCTAAA 57.820 29.630 0.00 0.00 35.58 1.85
1217 1284 8.740123 TGTTGTAGTTCATTTGAAACCTCTAA 57.260 30.769 0.00 0.00 35.58 2.10
1218 1285 8.918202 ATGTTGTAGTTCATTTGAAACCTCTA 57.082 30.769 0.00 0.00 35.58 2.43
1219 1286 7.823745 ATGTTGTAGTTCATTTGAAACCTCT 57.176 32.000 0.00 0.00 35.58 3.69
1220 1287 7.744715 CGTATGTTGTAGTTCATTTGAAACCTC 59.255 37.037 0.00 0.00 35.58 3.85
1221 1288 7.308348 CCGTATGTTGTAGTTCATTTGAAACCT 60.308 37.037 0.00 0.00 35.58 3.50
1222 1289 6.799925 CCGTATGTTGTAGTTCATTTGAAACC 59.200 38.462 0.00 0.00 35.58 3.27
1223 1290 7.577979 TCCGTATGTTGTAGTTCATTTGAAAC 58.422 34.615 0.00 0.00 35.58 2.78
1224 1291 7.731882 TCCGTATGTTGTAGTTCATTTGAAA 57.268 32.000 0.00 0.00 35.58 2.69
1225 1292 7.389330 ACATCCGTATGTTGTAGTTCATTTGAA 59.611 33.333 0.00 0.00 44.07 2.69
1226 1293 6.876789 ACATCCGTATGTTGTAGTTCATTTGA 59.123 34.615 0.00 0.00 44.07 2.69
1227 1294 7.072177 ACATCCGTATGTTGTAGTTCATTTG 57.928 36.000 0.00 0.00 44.07 2.32
1228 1295 8.958119 ATACATCCGTATGTTGTAGTTCATTT 57.042 30.769 0.00 0.00 44.07 2.32
1234 1301 9.511272 TGTCTATATACATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 44.07 2.73
1256 1323 9.373450 AGTGAATCCACACTCTATAATATGTCT 57.627 33.333 0.00 0.00 46.36 3.41
1270 1337 5.851177 CGTAACAAAATGAGTGAATCCACAC 59.149 40.000 0.00 0.00 45.54 3.82
1271 1338 5.529430 ACGTAACAAAATGAGTGAATCCACA 59.471 36.000 0.00 0.00 45.54 4.17
1272 1339 5.997385 ACGTAACAAAATGAGTGAATCCAC 58.003 37.500 0.00 0.00 43.50 4.02
1273 1340 7.389330 ACATACGTAACAAAATGAGTGAATCCA 59.611 33.333 0.00 0.00 0.00 3.41
1274 1341 7.748847 ACATACGTAACAAAATGAGTGAATCC 58.251 34.615 0.00 0.00 0.00 3.01
1275 1342 9.901724 CTACATACGTAACAAAATGAGTGAATC 57.098 33.333 0.00 0.00 0.00 2.52
1276 1343 9.431887 ACTACATACGTAACAAAATGAGTGAAT 57.568 29.630 0.00 0.00 0.00 2.57
1277 1344 8.821147 ACTACATACGTAACAAAATGAGTGAA 57.179 30.769 0.00 0.00 0.00 3.18
1278 1345 7.543172 GGACTACATACGTAACAAAATGAGTGA 59.457 37.037 0.00 0.00 0.00 3.41
1279 1346 7.201496 GGGACTACATACGTAACAAAATGAGTG 60.201 40.741 0.00 0.00 0.00 3.51
1280 1347 6.815142 GGGACTACATACGTAACAAAATGAGT 59.185 38.462 0.00 0.00 0.00 3.41
1281 1348 7.039882 AGGGACTACATACGTAACAAAATGAG 58.960 38.462 0.00 0.00 36.02 2.90
1282 1349 6.938507 AGGGACTACATACGTAACAAAATGA 58.061 36.000 0.00 0.00 36.02 2.57
1283 1350 7.118680 ACAAGGGACTACATACGTAACAAAATG 59.881 37.037 0.00 0.00 38.49 2.32
1284 1351 7.163441 ACAAGGGACTACATACGTAACAAAAT 58.837 34.615 0.00 0.00 38.49 1.82
1285 1352 6.523840 ACAAGGGACTACATACGTAACAAAA 58.476 36.000 0.00 0.00 38.49 2.44
1286 1353 6.100404 ACAAGGGACTACATACGTAACAAA 57.900 37.500 0.00 0.00 38.49 2.83
1287 1354 5.726980 ACAAGGGACTACATACGTAACAA 57.273 39.130 0.00 0.00 38.49 2.83
1288 1355 5.243507 TCAACAAGGGACTACATACGTAACA 59.756 40.000 0.00 0.00 38.49 2.41
1289 1356 5.713025 TCAACAAGGGACTACATACGTAAC 58.287 41.667 0.00 0.00 38.49 2.50
1290 1357 5.981088 TCAACAAGGGACTACATACGTAA 57.019 39.130 0.00 0.00 38.49 3.18
1291 1358 5.981088 TTCAACAAGGGACTACATACGTA 57.019 39.130 0.00 0.00 38.49 3.57
1292 1359 4.877378 TTCAACAAGGGACTACATACGT 57.123 40.909 0.00 0.00 38.49 3.57
1293 1360 6.106673 AGATTTCAACAAGGGACTACATACG 58.893 40.000 0.00 0.00 38.49 3.06
1294 1361 7.331791 AGAGATTTCAACAAGGGACTACATAC 58.668 38.462 0.00 0.00 38.49 2.39
1295 1362 7.496346 AGAGATTTCAACAAGGGACTACATA 57.504 36.000 0.00 0.00 38.49 2.29
1296 1363 6.380079 AGAGATTTCAACAAGGGACTACAT 57.620 37.500 0.00 0.00 38.49 2.29
1297 1364 5.825593 AGAGATTTCAACAAGGGACTACA 57.174 39.130 0.00 0.00 38.49 2.74
1298 1365 8.617290 TTTTAGAGATTTCAACAAGGGACTAC 57.383 34.615 0.00 0.00 38.49 2.73
1299 1366 9.284968 CTTTTTAGAGATTTCAACAAGGGACTA 57.715 33.333 0.00 0.00 38.49 2.59
1301 1368 8.076781 GTCTTTTTAGAGATTTCAACAAGGGAC 58.923 37.037 0.00 0.00 0.00 4.46
1302 1369 7.998964 AGTCTTTTTAGAGATTTCAACAAGGGA 59.001 33.333 0.00 0.00 0.00 4.20
1303 1370 8.171164 AGTCTTTTTAGAGATTTCAACAAGGG 57.829 34.615 0.00 0.00 0.00 3.95
1320 1387 8.520351 CCTCCGTTCCAAAATATAAGTCTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
1321 1388 7.122204 CCCTCCGTTCCAAAATATAAGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
1322 1389 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
1323 1390 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
1324 1391 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
1325 1392 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
1326 1393 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
1327 1394 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
1328 1395 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
1329 1396 6.328148 ACATACTCCCTCCGTTCCAAAATATA 59.672 38.462 0.00 0.00 0.00 0.86
1330 1397 5.132144 ACATACTCCCTCCGTTCCAAAATAT 59.868 40.000 0.00 0.00 0.00 1.28
1331 1398 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
1332 1399 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
1333 1400 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
1334 1401 2.027561 CACATACTCCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
1335 1402 1.553248 CACATACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
1336 1403 1.191535 CACATACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
1337 1404 0.464452 CCACATACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
1338 1405 1.192428 ACCACATACTCCCTCCGTTC 58.808 55.000 0.00 0.00 0.00 3.95
1339 1406 2.498885 GTTACCACATACTCCCTCCGTT 59.501 50.000 0.00 0.00 0.00 4.44
1340 1407 2.105766 GTTACCACATACTCCCTCCGT 58.894 52.381 0.00 0.00 0.00 4.69
1341 1408 1.411612 GGTTACCACATACTCCCTCCG 59.588 57.143 0.00 0.00 0.00 4.63
1342 1409 2.474112 TGGTTACCACATACTCCCTCC 58.526 52.381 0.00 0.00 0.00 4.30
1343 1410 4.409247 AGATTGGTTACCACATACTCCCTC 59.591 45.833 2.39 0.00 30.78 4.30
1344 1411 4.371681 AGATTGGTTACCACATACTCCCT 58.628 43.478 2.39 0.00 30.78 4.20
1345 1412 4.163458 TGAGATTGGTTACCACATACTCCC 59.837 45.833 2.39 0.00 30.78 4.30
1346 1413 5.353394 TGAGATTGGTTACCACATACTCC 57.647 43.478 2.39 0.00 30.78 3.85
1347 1414 7.174253 TGTTTTGAGATTGGTTACCACATACTC 59.826 37.037 2.39 10.81 30.78 2.59
1348 1415 7.001674 TGTTTTGAGATTGGTTACCACATACT 58.998 34.615 2.39 0.95 30.78 2.12
1349 1416 7.209471 TGTTTTGAGATTGGTTACCACATAC 57.791 36.000 2.39 1.69 30.78 2.39
1350 1417 7.825331 TTGTTTTGAGATTGGTTACCACATA 57.175 32.000 2.39 0.00 30.78 2.29
1351 1418 6.723298 TTGTTTTGAGATTGGTTACCACAT 57.277 33.333 2.39 0.93 30.78 3.21
1352 1419 6.071334 TGTTTGTTTTGAGATTGGTTACCACA 60.071 34.615 2.39 0.00 30.78 4.17
1353 1420 6.334202 TGTTTGTTTTGAGATTGGTTACCAC 58.666 36.000 2.39 0.00 30.78 4.16
1354 1421 6.531503 TGTTTGTTTTGAGATTGGTTACCA 57.468 33.333 0.00 0.00 0.00 3.25
1355 1422 7.494298 ACATTGTTTGTTTTGAGATTGGTTACC 59.506 33.333 0.00 0.00 33.74 2.85
1356 1423 8.419076 ACATTGTTTGTTTTGAGATTGGTTAC 57.581 30.769 0.00 0.00 33.74 2.50
1357 1424 8.253810 TGACATTGTTTGTTTTGAGATTGGTTA 58.746 29.630 0.00 0.00 39.18 2.85
1358 1425 7.102346 TGACATTGTTTGTTTTGAGATTGGTT 58.898 30.769 0.00 0.00 39.18 3.67
1359 1426 6.638610 TGACATTGTTTGTTTTGAGATTGGT 58.361 32.000 0.00 0.00 39.18 3.67
1360 1427 7.064371 TGTTGACATTGTTTGTTTTGAGATTGG 59.936 33.333 0.00 0.00 39.18 3.16
1361 1428 7.961855 TGTTGACATTGTTTGTTTTGAGATTG 58.038 30.769 0.00 0.00 39.18 2.67
1362 1429 8.545229 TTGTTGACATTGTTTGTTTTGAGATT 57.455 26.923 0.00 0.00 39.18 2.40
1363 1430 8.545229 TTTGTTGACATTGTTTGTTTTGAGAT 57.455 26.923 0.00 0.00 39.18 2.75
1364 1431 7.953158 TTTGTTGACATTGTTTGTTTTGAGA 57.047 28.000 0.00 0.00 39.18 3.27
1365 1432 9.609950 ATTTTTGTTGACATTGTTTGTTTTGAG 57.390 25.926 0.00 0.00 39.18 3.02
1366 1433 9.390795 CATTTTTGTTGACATTGTTTGTTTTGA 57.609 25.926 0.00 0.00 39.18 2.69
1367 1434 8.154666 GCATTTTTGTTGACATTGTTTGTTTTG 58.845 29.630 0.00 0.00 39.18 2.44
1368 1435 7.864379 TGCATTTTTGTTGACATTGTTTGTTTT 59.136 25.926 0.00 0.00 39.18 2.43
1369 1436 7.365741 TGCATTTTTGTTGACATTGTTTGTTT 58.634 26.923 0.00 0.00 39.18 2.83
1370 1437 6.906659 TGCATTTTTGTTGACATTGTTTGTT 58.093 28.000 0.00 0.00 39.18 2.83
1371 1438 6.492007 TGCATTTTTGTTGACATTGTTTGT 57.508 29.167 0.00 0.00 42.79 2.83
1372 1439 6.075310 GCATGCATTTTTGTTGACATTGTTTG 60.075 34.615 14.21 0.00 0.00 2.93
1373 1440 5.972382 GCATGCATTTTTGTTGACATTGTTT 59.028 32.000 14.21 0.00 0.00 2.83
1374 1441 5.066117 TGCATGCATTTTTGTTGACATTGTT 59.934 32.000 18.46 0.00 0.00 2.83
1375 1442 4.575236 TGCATGCATTTTTGTTGACATTGT 59.425 33.333 18.46 0.00 0.00 2.71
1376 1443 5.096954 TGCATGCATTTTTGTTGACATTG 57.903 34.783 18.46 0.00 0.00 2.82
1377 1444 5.950758 ATGCATGCATTTTTGTTGACATT 57.049 30.435 27.46 0.58 31.82 2.71
1378 1445 5.950758 AATGCATGCATTTTTGTTGACAT 57.049 30.435 34.78 13.06 43.32 3.06
1379 1446 6.073167 CCTTAATGCATGCATTTTTGTTGACA 60.073 34.615 41.74 23.14 43.32 3.58
1380 1447 6.308675 CCTTAATGCATGCATTTTTGTTGAC 58.691 36.000 41.74 1.15 43.32 3.18
1381 1448 5.106634 GCCTTAATGCATGCATTTTTGTTGA 60.107 36.000 41.74 24.46 43.32 3.18
1382 1449 5.090083 GCCTTAATGCATGCATTTTTGTTG 58.910 37.500 41.74 26.55 43.32 3.33
1383 1450 5.005094 AGCCTTAATGCATGCATTTTTGTT 58.995 33.333 41.74 26.85 43.32 2.83
1384 1451 4.581868 AGCCTTAATGCATGCATTTTTGT 58.418 34.783 41.74 25.28 43.32 2.83
1385 1452 5.554822 AAGCCTTAATGCATGCATTTTTG 57.445 34.783 41.74 30.50 43.32 2.44
1386 1453 6.183360 CGTAAAGCCTTAATGCATGCATTTTT 60.183 34.615 41.74 34.41 43.32 1.94
1387 1454 5.291614 CGTAAAGCCTTAATGCATGCATTTT 59.708 36.000 41.74 31.20 43.32 1.82
1388 1455 4.805192 CGTAAAGCCTTAATGCATGCATTT 59.195 37.500 41.74 28.04 43.32 2.32
1389 1456 4.362279 CGTAAAGCCTTAATGCATGCATT 58.638 39.130 39.40 39.40 46.85 3.56
1390 1457 3.796504 GCGTAAAGCCTTAATGCATGCAT 60.797 43.478 27.46 27.46 40.81 3.96
1391 1458 2.479389 GCGTAAAGCCTTAATGCATGCA 60.479 45.455 25.04 25.04 40.81 3.96
1392 1459 2.119457 GCGTAAAGCCTTAATGCATGC 58.881 47.619 11.82 11.82 40.81 4.06
1433 1500 3.735746 GCAAAAGAAAAATGTCACCGAGG 59.264 43.478 0.00 0.00 0.00 4.63
1447 1514 3.380004 ACCTGACGTTCATTGCAAAAGAA 59.620 39.130 1.71 8.45 30.16 2.52
1449 1516 3.044986 CACCTGACGTTCATTGCAAAAG 58.955 45.455 1.71 0.00 0.00 2.27
1500 1588 7.472334 AGCACTTGATTCCAGTGATAATTTT 57.528 32.000 19.16 0.00 35.75 1.82
1507 1595 7.394016 TCTTAATTAGCACTTGATTCCAGTGA 58.606 34.615 19.16 1.96 35.75 3.41
1509 1597 7.148171 GCTTCTTAATTAGCACTTGATTCCAGT 60.148 37.037 4.56 0.00 37.35 4.00
1511 1599 6.658816 TGCTTCTTAATTAGCACTTGATTCCA 59.341 34.615 7.37 0.00 42.12 3.53
1523 1611 7.478322 AGCAACATGATGTGCTTCTTAATTAG 58.522 34.615 13.99 0.00 33.29 1.73
1568 1656 5.121768 CCATCGAGGCCGGTATATTTTAAAG 59.878 44.000 1.90 0.00 36.24 1.85
1573 1661 2.762535 CCATCGAGGCCGGTATATTT 57.237 50.000 1.90 0.00 36.24 1.40
1584 1672 3.273434 TCAGAAATTTCAGCCATCGAGG 58.727 45.455 19.99 0.00 41.84 4.63
1619 1876 6.071672 TGGCTGAAATGAAAACCGATTCAATA 60.072 34.615 3.06 0.00 42.22 1.90
1625 1884 4.559153 CTTTGGCTGAAATGAAAACCGAT 58.441 39.130 0.00 0.00 0.00 4.18
1628 1891 4.058124 GTCCTTTGGCTGAAATGAAAACC 58.942 43.478 0.00 0.00 0.00 3.27
1713 1976 6.016610 ACGGCAGTATACACAACTTCAATTTT 60.017 34.615 5.50 0.00 0.00 1.82
1734 2001 6.970043 TGTCATAACATTTTAGCAATTACGGC 59.030 34.615 0.00 0.00 0.00 5.68
1802 2070 8.941127 TTTGGCGTAAATTATCAAAAATTTGC 57.059 26.923 0.98 3.27 38.98 3.68
1822 2092 0.249120 GCATGGTTACCCCTTTTGGC 59.751 55.000 0.00 0.00 38.58 4.52
1825 2095 6.087276 AGTATAAGCATGGTTACCCCTTTT 57.913 37.500 19.03 4.89 0.00 2.27
1830 2100 7.771927 TCTACTAGTATAAGCATGGTTACCC 57.228 40.000 19.03 12.29 0.00 3.69
1831 2101 9.075678 TCTTCTACTAGTATAAGCATGGTTACC 57.924 37.037 19.03 12.62 0.00 2.85
1881 2167 5.336531 CCTGTAGCTCTCTCTTTCGGTAAAA 60.337 44.000 0.00 0.00 0.00 1.52
2033 2328 0.239347 CTTGCGACTTTTGGGAGCAG 59.761 55.000 0.00 0.00 39.11 4.24
2082 2377 9.838339 AATTCTCTTCAAACTTAGTCAGAAAGA 57.162 29.630 0.00 0.00 0.00 2.52
2129 2424 8.253810 GCTACATTCAGAGCATAGTATATGGAA 58.746 37.037 0.00 0.00 38.62 3.53
2130 2425 7.617329 AGCTACATTCAGAGCATAGTATATGGA 59.383 37.037 0.00 0.00 41.36 3.41
2131 2426 7.780064 AGCTACATTCAGAGCATAGTATATGG 58.220 38.462 0.00 0.00 41.36 2.74
2206 2501 2.512515 GCTGCTCCCGTCCATCAC 60.513 66.667 0.00 0.00 0.00 3.06
2271 2569 1.712663 GTACTCCTCGTCGACGTCC 59.287 63.158 34.40 13.53 40.80 4.79
2295 2593 1.070786 GGACCTGGACTTGAACGCA 59.929 57.895 0.00 0.00 0.00 5.24
2363 2661 3.672295 CTGGGCCTTGACGAGAGCC 62.672 68.421 4.53 11.79 39.57 4.70
2370 2668 2.674380 CTGGTGCTGGGCCTTGAC 60.674 66.667 4.53 0.00 0.00 3.18
2456 2757 2.529619 GGCTCCAGCTCGAAATCGC 61.530 63.158 0.00 0.00 41.70 4.58
2709 3010 2.125310 CTCGCGGCATTGGTGGTA 60.125 61.111 6.13 0.00 0.00 3.25
2712 3013 4.776322 TCCCTCGCGGCATTGGTG 62.776 66.667 6.13 0.00 0.00 4.17
3043 3344 2.383527 CGGACAGCTTCTTGACGGC 61.384 63.158 0.00 0.00 0.00 5.68
3132 3433 1.515954 CCCAACGATGTACGCTCCT 59.484 57.895 0.00 0.00 46.94 3.69
3279 3580 3.670629 CTCCCCGCACTCCTCCTCT 62.671 68.421 0.00 0.00 0.00 3.69
3460 3761 6.037830 ACAACAACACACTAGCGTCTTATTTT 59.962 34.615 0.00 0.00 0.00 1.82
3501 3802 9.360093 CACAAGGAAAAACTACACATAAACAAA 57.640 29.630 0.00 0.00 0.00 2.83
3502 3803 8.740906 TCACAAGGAAAAACTACACATAAACAA 58.259 29.630 0.00 0.00 0.00 2.83
3510 3811 4.976116 GTGCATCACAAGGAAAAACTACAC 59.024 41.667 0.00 0.00 34.08 2.90
3530 3831 1.146041 TCATGCCACTATCCCGTGC 59.854 57.895 0.00 0.00 33.60 5.34
3533 3834 0.104120 TTCGTCATGCCACTATCCCG 59.896 55.000 0.00 0.00 0.00 5.14
3631 3936 6.627087 ATTGATCCGATACTGATACCCATT 57.373 37.500 0.00 0.00 0.00 3.16
3730 4042 4.001618 TCACGGTTGACATTCTGAATCA 57.998 40.909 0.00 0.00 0.00 2.57
3878 4191 8.358148 GCCATGTTCAAATCATAGAGAAATCAT 58.642 33.333 0.00 0.00 0.00 2.45
3937 4250 1.292242 TCCTCCTGCTGAACCTCCTAT 59.708 52.381 0.00 0.00 0.00 2.57
3963 4276 5.275630 TCTCATTTCTCTCATCTCCTCCAA 58.724 41.667 0.00 0.00 0.00 3.53
3978 4297 6.702723 CCTCTGATCTGTGAAGATCTCATTTC 59.297 42.308 14.89 0.00 43.66 2.17
4058 4378 1.374631 CACGCAGCAAGCAGGTAGA 60.375 57.895 0.00 0.00 46.13 2.59
4081 4401 1.348036 GCTACTCCTCACCAACACCTT 59.652 52.381 0.00 0.00 0.00 3.50
4085 4405 0.321671 GCTGCTACTCCTCACCAACA 59.678 55.000 0.00 0.00 0.00 3.33
4186 5707 2.687566 TTTCCTCCCTCCCGAGCC 60.688 66.667 0.00 0.00 0.00 4.70
4213 5734 3.245984 CCAATACCCCCTTCCTTTTCCTT 60.246 47.826 0.00 0.00 0.00 3.36
4230 5751 2.775384 CAGCAACCCTAGTACCCCAATA 59.225 50.000 0.00 0.00 0.00 1.90
4263 5785 1.835927 AAGAGACCACTCAGCCCAGC 61.836 60.000 0.00 0.00 44.79 4.85
4288 5810 0.258774 ATTTTGGATACGGCCCAGCT 59.741 50.000 0.00 0.00 42.51 4.24
4459 5992 3.165071 TCACATAGTGGAGCTTGTCTCA 58.835 45.455 0.00 0.00 43.70 3.27
4460 5993 3.876274 TCACATAGTGGAGCTTGTCTC 57.124 47.619 0.00 0.00 41.15 3.36
4463 5996 3.441572 GCAAATCACATAGTGGAGCTTGT 59.558 43.478 0.00 0.00 33.87 3.16
4465 5998 3.960571 AGCAAATCACATAGTGGAGCTT 58.039 40.909 0.00 0.00 33.87 3.74
4471 6004 3.928375 GCCCAAAAGCAAATCACATAGTG 59.072 43.478 0.00 0.00 34.45 2.74
4472 6005 3.577848 TGCCCAAAAGCAAATCACATAGT 59.422 39.130 0.00 0.00 40.56 2.12
4473 6006 4.191033 TGCCCAAAAGCAAATCACATAG 57.809 40.909 0.00 0.00 40.56 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.