AutoCloner

Multiple sequence alignment - TraesCS7B01G464000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G464000	chr7B	100.000	2333	0	0	1	2333	720829998	720827666	0.000000e+00	4309.0
1	TraesCS7B01G464000	chr7B	81.794	1494	162	48	1	1420	720933600	720932143	0.000000e+00	1151.0
2	TraesCS7B01G464000	chr7B	97.782	496	9	2	1	495	720874348	720873854	0.000000e+00	854.0
3	TraesCS7B01G464000	chr7B	82.313	588	74	22	795	1357	720948743	720948161	1.250000e-132	483.0
4	TraesCS7B01G464000	chr7B	88.889	117	13	0	1069	1185	720706408	720706292	6.720000e-31	145.0
5	TraesCS7B01G464000	chr7B	87.234	94	11	1	1422	1514	443341444	443341351	3.170000e-19	106.0
6	TraesCS7B01G464000	chr7B	84.906	106	15	1	1411	1515	504190092	504190197	3.170000e-19	106.0
7	TraesCS7B01G464000	chr7B	85.294	102	10	4	1421	1517	704247211	704247312	1.480000e-17	100.0
8	TraesCS7B01G464000	chr7B	81.111	90	11	5	109	196	720933680	720933765	1.500000e-07	67.6
9	TraesCS7B01G464000	chr7D	88.144	1670	144	24	693	2333	623358968	623360612	0.000000e+00	1938.0
10	TraesCS7B01G464000	chr7D	87.268	377	33	7	1	372	623357907	623358273	1.290000e-112	416.0
11	TraesCS7B01G464000	chr7D	85.083	362	47	6	926	1282	622995372	622995731	1.700000e-96	363.0
12	TraesCS7B01G464000	chr7D	84.229	279	21	9	428	698	623358659	623358922	1.380000e-62	250.0
13	TraesCS7B01G464000	chr7D	77.941	204	27	10	665	853	622995081	622995281	6.810000e-21	111.0
14	TraesCS7B01G464000	chr7A	82.792	2278	208	39	130	2333	718344755	718342588	0.000000e+00	1866.0
15	TraesCS7B01G464000	chr7A	89.255	1061	95	13	767	1815	718265427	718264374	0.000000e+00	1310.0
16	TraesCS7B01G464000	chr7A	82.935	879	103	23	570	1420	718427589	718426730	0.000000e+00	749.0
17	TraesCS7B01G464000	chr7A	85.478	544	43	12	5	522	718428139	718427606	3.410000e-148	534.0
18	TraesCS7B01G464000	chr7A	86.179	492	45	6	1844	2333	718264383	718263913	5.750000e-141	510.0
19	TraesCS7B01G464000	chr7A	81.391	575	79	17	795	1357	718440911	718440353	5.920000e-121	444.0
20	TraesCS7B01G464000	chr7A	87.798	377	32	6	1	372	718266539	718266172	1.660000e-116	429.0
21	TraesCS7B01G464000	chr7A	83.154	279	22	16	428	698	718265785	718265524	5.010000e-57	231.0
22	TraesCS7B01G464000	chr7A	75.960	495	86	23	927	1405	718518082	718517605	8.390000e-55	224.0
23	TraesCS7B01G464000	chr7A	90.000	60	4	2	376	433	718266150	718266091	2.490000e-10	76.8
24	TraesCS7B01G464000	chr7A	80.220	91	14	3	109	198	718266616	718266703	5.380000e-07	65.8
25	TraesCS7B01G464000	chr7A	97.143	35	1	0	109	143	718345031	718345065	2.500000e-05	60.2
26	TraesCS7B01G464000	chr5D	87.755	98	11	1	1419	1515	443258199	443258102	1.890000e-21	113.0
27	TraesCS7B01G464000	chr3D	86.598	97	12	1	1420	1515	9066350	9066254	3.170000e-19	106.0
28	TraesCS7B01G464000	chr4D	84.158	101	15	1	1417	1516	26900913	26900813	1.910000e-16	97.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G464000	chr7B	720827666	720829998	2332	True	4309.00	4309	100.0000	1	2333	1	chr7B.!!$R3	2332
1	TraesCS7B01G464000	chr7B	720932143	720933600	1457	True	1151.00	1151	81.7940	1	1420	1	chr7B.!!$R5	1419
2	TraesCS7B01G464000	chr7B	720948161	720948743	582	True	483.00	483	82.3130	795	1357	1	chr7B.!!$R6	562
3	TraesCS7B01G464000	chr7D	623357907	623360612	2705	False	868.00	1938	86.5470	1	2333	3	chr7D.!!$F2	2332
4	TraesCS7B01G464000	chr7D	622995081	622995731	650	False	237.00	363	81.5120	665	1282	2	chr7D.!!$F1	617
5	TraesCS7B01G464000	chr7A	718342588	718344755	2167	True	1866.00	1866	82.7920	130	2333	1	chr7A.!!$R1	2203
6	TraesCS7B01G464000	chr7A	718426730	718428139	1409	True	641.50	749	84.2065	5	1420	2	chr7A.!!$R5	1415
7	TraesCS7B01G464000	chr7A	718263913	718266539	2626	True	511.36	1310	87.2772	1	2333	5	chr7A.!!$R4	2332
8	TraesCS7B01G464000	chr7A	718440353	718440911	558	True	444.00	444	81.3910	795	1357	1	chr7A.!!$R2	562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
302	310	0.268869	AGGGAGTAGGGATCCATGCA	59.731	55.0	16.98	0.0	38.7	3.96	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1931	2446	0.106894	GGCCAAATAGGACGAGGAGG	59.893	60.0	0.0	0.0	41.22	4.3	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
74	78	2.094854	GGAAGAGAAGCCTTGCACATTG	60.095	50.000	0.00	0.00	35.04	2.82
101	105	4.806342	ACTTACGTTTGGCAAACTACAG	57.194	40.909	33.01	26.48	39.23	2.74
163	168	7.425595	GTCGATAACATTGCTACTTTTACAAGC	59.574	37.037	0.00	0.00	36.77	4.01
169	174	4.488126	TGCTACTTTTACAAGCAAGCTG	57.512	40.909	14.28	0.00	42.96	4.24
174	179	3.699038	ACTTTTACAAGCAAGCTGACCAA	59.301	39.130	0.00	0.00	32.57	3.67
209	214	6.390504	TGGAGATACCCTTATTAGGTGTCAT	58.609	40.000	9.02	0.00	45.28	3.06
230	236	1.499049	GTCTTGTGACGTGGAGAACC	58.501	55.000	0.00	0.00	33.15	3.62
288	296	6.156429	ACTCTTTGTAATGGTTACCTAGGGAG	59.844	42.308	14.81	7.02	35.25	4.30
289	297	6.027482	TCTTTGTAATGGTTACCTAGGGAGT	58.973	40.000	14.81	0.00	35.25	3.85
290	298	7.191210	TCTTTGTAATGGTTACCTAGGGAGTA	58.809	38.462	14.81	0.00	35.25	2.59
291	299	7.343833	TCTTTGTAATGGTTACCTAGGGAGTAG	59.656	40.741	14.81	0.00	35.25	2.57
300	308	2.826488	CCTAGGGAGTAGGGATCCATG	58.174	57.143	15.23	0.00	44.54	3.66
301	309	2.183679	CTAGGGAGTAGGGATCCATGC	58.816	57.143	15.23	10.74	38.70	4.06
302	310	0.268869	AGGGAGTAGGGATCCATGCA	59.731	55.000	16.98	0.00	38.70	3.96
375	392	5.636903	ATGTCTGCTTAATGTGGGAGTAT	57.363	39.130	0.00	0.00	0.00	2.12
376	393	6.747414	ATGTCTGCTTAATGTGGGAGTATA	57.253	37.500	0.00	0.00	0.00	1.47
378	395	6.582636	TGTCTGCTTAATGTGGGAGTATAAG	58.417	40.000	0.00	0.00	0.00	1.73
379	396	5.467063	GTCTGCTTAATGTGGGAGTATAAGC	59.533	44.000	8.47	8.47	45.35	3.09
383	425	6.990349	TGCTTAATGTGGGAGTATAAGCTAAC	59.010	38.462	14.60	0.00	45.35	2.34
466	820	5.038033	GTGCCGATGTTTTCAAAACTGTAA	58.962	37.500	14.10	0.00	0.00	2.41
481	835	1.073923	CTGTAAGCCTGGTGAACCCTT	59.926	52.381	0.00	0.00	34.29	3.95
490	844	4.837972	CCTGGTGAACCCTTTTTGAAAAA	58.162	39.130	2.83	2.83	34.29	1.94
552	915	5.049405	GGAAAGGAAAGTACACAGTCACATG	60.049	44.000	0.00	0.00	0.00	3.21
620	987	4.820173	TGAGACCTACGGATATATATGGCG	59.180	45.833	0.00	0.00	0.00	5.69
642	1009	2.025727	GCAGAGAATGCGCATGCC	59.974	61.111	26.09	18.62	46.99	4.40
644	1011	1.822613	CAGAGAATGCGCATGCCCT	60.823	57.895	26.09	16.47	41.78	5.19
688	1059	7.993183	CAGAAGATTAACCCTTTCCTAATAGCA	59.007	37.037	0.00	0.00	0.00	3.49
689	1060	8.728098	AGAAGATTAACCCTTTCCTAATAGCAT	58.272	33.333	0.00	0.00	0.00	3.79
725	1150	5.006068	CACATACGTCCACAGATGATCTTTG	59.994	44.000	1.66	1.66	32.93	2.77
727	1152	3.589988	ACGTCCACAGATGATCTTTGTC	58.410	45.455	7.71	0.77	32.93	3.18
728	1153	3.006859	ACGTCCACAGATGATCTTTGTCA	59.993	43.478	7.71	0.00	32.93	3.58
731	1156	5.122869	CGTCCACAGATGATCTTTGTCATTT	59.877	40.000	7.71	0.00	38.88	2.32
793	1223	3.392947	TCTGACCACATACAAAACCAGGA	59.607	43.478	0.00	0.00	0.00	3.86
863	1293	1.003355	CCGTGGAGAACAGTGCCAT	60.003	57.895	0.00	0.00	33.66	4.40
1014	1511	1.514678	AAGAAATGGAGCACGCGCAA	61.515	50.000	5.73	0.00	42.27	4.85
1018	1515	3.881952	ATGGAGCACGCGCAAGACA	62.882	57.895	5.73	0.00	42.27	3.41
1146	1643	2.712539	CACCAGAACGCGCACAAA	59.287	55.556	5.73	0.00	0.00	2.83
1217	1714	1.001641	CTTGGAAGCCAGGGAGGTG	60.002	63.158	0.00	0.00	40.61	4.00
1262	1759	2.033141	GCCAGCAGCAGAAGGTGA	59.967	61.111	0.00	0.00	45.95	4.02
1342	1843	1.800315	CGGCTATAATCGGTCCGCG	60.800	63.158	6.34	0.00	33.36	6.46
1343	1844	2.092882	GGCTATAATCGGTCCGCGC	61.093	63.158	6.34	0.00	0.00	6.86
1448	1949	3.061563	TCCGATTCAAAATAAGTGTCGCG	59.938	43.478	0.00	0.00	0.00	5.87
1485	1986	5.209977	GTTGGTTCAACCTCGATACAAAAC	58.790	41.667	8.40	0.00	39.58	2.43
1506	2008	8.443160	CAAAACTGTGACACTTATTATGATCGT	58.557	33.333	7.20	0.00	0.00	3.73
1520	2022	4.920640	ATGATCGTAGGGAGTACTTGTG	57.079	45.455	0.00	0.00	0.00	3.33
1529	2031	2.300437	GGGAGTACTTGTGTCAAGCTCT	59.700	50.000	9.06	7.73	0.00	4.09
1539	2041	1.401552	TGTCAAGCTCTTGTTGTGCAC	59.598	47.619	10.75	10.75	41.16	4.57
1552	2054	2.049888	TGTGCACACAGTGGATTCAA	57.950	45.000	17.42	0.00	36.11	2.69
1668	2172	6.442564	ACCAGACTGTAATGACCTTGGTATTA	59.557	38.462	0.93	0.00	0.00	0.98
1723	2227	7.645340	TGTAAGTCTAAGTGTTCAAGTTACGAC	59.355	37.037	0.00	0.00	31.43	4.34
1752	2256	3.910627	AGGACACTGTGAAAATAGGGACT	59.089	43.478	15.86	0.00	46.37	3.85
1775	2280	8.974060	ACTTTATCCATTACGGTGTTGATTAT	57.026	30.769	0.00	0.00	35.57	1.28
1823	2328	9.838339	ACATAGATTTTTAGACCTATGACCTTG	57.162	33.333	13.24	0.00	40.30	3.61
1836	2341	3.857549	TGACCTTGAAGACATCTCTCG	57.142	47.619	0.00	0.00	0.00	4.04
1859	2364	5.220529	CGAAACGGTTTAAGAACTTCTGTGT	60.221	40.000	6.03	0.00	36.03	3.72
1862	2367	5.663456	ACGGTTTAAGAACTTCTGTGTGTA	58.337	37.500	0.00	0.00	36.03	2.90
1870	2375	6.902771	AGAACTTCTGTGTGTATCTAGTGT	57.097	37.500	0.00	0.00	0.00	3.55
1873	2378	7.883833	AGAACTTCTGTGTGTATCTAGTGTCTA	59.116	37.037	0.00	0.00	0.00	2.59
1931	2446	2.908688	AACATTTGGGTTTGCTCCAC	57.091	45.000	0.00	0.00	33.43	4.02
1934	2449	1.273327	CATTTGGGTTTGCTCCACCTC	59.727	52.381	0.41	0.00	34.36	3.85
1948	2463	1.139058	CCACCTCCTCGTCCTATTTGG	59.861	57.143	0.00	0.00	37.10	3.28
1954	2469	3.314693	TCCTCGTCCTATTTGGCCTTAT	58.685	45.455	3.32	0.00	35.26	1.73
2129	2646	0.386352	CAAGATGCACAACACGCCTG	60.386	55.000	0.00	0.00	0.00	4.85
2130	2647	0.534877	AAGATGCACAACACGCCTGA	60.535	50.000	0.00	0.00	0.00	3.86
2223	2741	2.950975	TGACAAAACGGTTCCCTTTACC	59.049	45.455	0.00	0.00	0.00	2.85
2228	2746	4.712051	AAACGGTTCCCTTTACCTAACT	57.288	40.909	0.00	0.00	33.35	2.24
2246	2764	8.567285	ACCTAACTCATTGATTTCTTTACCTG	57.433	34.615	0.00	0.00	0.00	4.00
2298	2817	7.165460	TGATAATACTCGACACTTCCTTTCA	57.835	36.000	0.00	0.00	0.00	2.69
2323	2844	4.389890	AAATTGTTCAGTCAAGCTTGCA	57.610	36.364	21.99	9.72	0.00	4.08

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	3.557228	TGAAGCCCTTGCAAATGTTTT	57.443	38.095	0.00	0.00	41.13	2.43
24	25	3.134442	TCTTGAAGCCCTTGCAAATGTTT	59.866	39.130	0.00	0.00	41.13	2.83
35	39	4.228210	TCTTCCAATGTATCTTGAAGCCCT	59.772	41.667	0.00	0.00	0.00	5.19
261	269	7.847848	TCCCTAGGTAACCATTACAAAGAGTAT	59.152	37.037	8.29	0.00	37.88	2.12
288	296	1.701847	AGTGGATGCATGGATCCCTAC	59.298	52.381	35.21	28.31	41.31	3.18
289	297	1.701292	CAGTGGATGCATGGATCCCTA	59.299	52.381	35.21	20.32	41.31	3.53
290	298	0.477204	CAGTGGATGCATGGATCCCT	59.523	55.000	35.21	28.52	41.31	4.20
291	299	3.031916	CAGTGGATGCATGGATCCC	57.968	57.895	35.21	27.12	41.31	3.85
301	309	4.036027	GGATTCACTATGTTGCAGTGGATG	59.964	45.833	1.73	0.00	41.41	3.51
302	310	4.080129	AGGATTCACTATGTTGCAGTGGAT	60.080	41.667	3.50	0.20	43.54	3.41
313	329	2.890311	AGCGAGGAGAGGATTCACTATG	59.110	50.000	0.00	0.00	0.00	2.23
356	373	5.366768	AGCTTATACTCCCACATTAAGCAGA	59.633	40.000	13.54	0.00	40.37	4.26
376	393	8.914011	ACTCTTGATTTAAAAGGTTGTTAGCTT	58.086	29.630	0.00	0.00	43.64	3.74
378	395	7.808381	GGACTCTTGATTTAAAAGGTTGTTAGC	59.192	37.037	0.00	0.00	0.00	3.09
379	396	8.846211	TGGACTCTTGATTTAAAAGGTTGTTAG	58.154	33.333	0.00	0.00	0.00	2.34
383	425	9.546428	AAATTGGACTCTTGATTTAAAAGGTTG	57.454	29.630	0.00	0.00	0.00	3.77
466	820	1.063266	TCAAAAAGGGTTCACCAGGCT	60.063	47.619	0.00	0.00	43.89	4.58
506	860	9.638239	TTTCCTAAAACATGTGAATGAATAAGC	57.362	29.630	0.00	0.00	0.00	3.09
516	870	7.776030	TGTACTTTCCTTTCCTAAAACATGTGA	59.224	33.333	0.00	0.00	0.00	3.58
524	880	6.764560	GTGACTGTGTACTTTCCTTTCCTAAA	59.235	38.462	0.00	0.00	0.00	1.85
602	967	7.504203	GCAGGACGCCATATATATCCGTAGG	62.504	52.000	14.54	5.21	42.92	3.18
603	968	4.556898	GCAGGACGCCATATATATCCGTAG	60.557	50.000	14.54	10.42	34.46	3.51
605	970	2.100916	GCAGGACGCCATATATATCCGT	59.899	50.000	14.49	14.49	34.46	4.69
607	972	3.384789	TCTGCAGGACGCCATATATATCC	59.615	47.826	15.13	0.00	41.33	2.59
608	973	4.339530	TCTCTGCAGGACGCCATATATATC	59.660	45.833	15.13	0.00	41.33	1.63
609	974	4.281657	TCTCTGCAGGACGCCATATATAT	58.718	43.478	15.13	0.00	41.33	0.86
610	975	3.697166	TCTCTGCAGGACGCCATATATA	58.303	45.455	15.13	0.00	41.33	0.86
611	976	2.529632	TCTCTGCAGGACGCCATATAT	58.470	47.619	15.13	0.00	41.33	0.86
612	977	1.995376	TCTCTGCAGGACGCCATATA	58.005	50.000	15.13	0.00	41.33	0.86
628	995	1.099879	AGAAGGGCATGCGCATTCTC	61.100	55.000	33.01	17.35	39.99	2.87
636	1003	2.289565	GGTTACTGTAGAAGGGCATGC	58.710	52.381	9.90	9.90	0.00	4.06
725	1150	7.284034	ACCAAGATTCCATATGTCTGAAATGAC	59.716	37.037	1.24	0.00	37.47	3.06
727	1152	7.578310	ACCAAGATTCCATATGTCTGAAATG	57.422	36.000	1.24	1.02	0.00	2.32
728	1153	7.069085	CCAACCAAGATTCCATATGTCTGAAAT	59.931	37.037	1.24	0.00	0.00	2.17
731	1156	5.439721	CCAACCAAGATTCCATATGTCTGA	58.560	41.667	1.24	0.00	0.00	3.27
760	1185	0.326264	GTGGTCAGACTGCCTTCCAT	59.674	55.000	14.46	0.00	31.86	3.41
762	1187	0.326264	ATGTGGTCAGACTGCCTTCC	59.674	55.000	14.46	7.74	0.00	3.46
763	1188	2.028112	TGTATGTGGTCAGACTGCCTTC	60.028	50.000	14.46	9.54	36.81	3.46
764	1189	1.977854	TGTATGTGGTCAGACTGCCTT	59.022	47.619	14.46	5.29	36.81	4.35
848	1278	1.379916	CCCATGGCACTGTTCTCCA	59.620	57.895	6.09	0.00	0.00	3.86
863	1293	1.184431	CATGTGGTGCTAATTGCCCA	58.816	50.000	0.00	0.00	42.00	5.36
909	1339	5.518487	GCTAGCTATAGATTCAAATCGGAGC	59.482	44.000	7.70	13.88	40.35	4.70
996	1492	1.915614	CTTGCGCGTGCTCCATTTCT	61.916	55.000	23.16	0.00	43.34	2.52
997	1493	1.512734	CTTGCGCGTGCTCCATTTC	60.513	57.895	23.16	0.00	43.34	2.17
1014	1511	1.889454	CTCGAGGCTCAGCTTGTCT	59.111	57.895	15.95	0.00	0.00	3.41
1239	1736	1.901654	CTTCTGCTGCTGGCTCCTCT	61.902	60.000	6.69	0.00	42.39	3.69
1342	1843	3.150767	ACTACCAGAGATCTACCGATGC	58.849	50.000	0.00	0.00	0.00	3.91
1343	1844	5.587043	GGATACTACCAGAGATCTACCGATG	59.413	48.000	0.00	0.00	0.00	3.84
1448	1949	5.585820	TGAACCAACCTTAGTTCAAAACC	57.414	39.130	3.24	0.00	46.93	3.27
1479	1980	8.443160	CGATCATAATAAGTGTCACAGTTTTGT	58.557	33.333	2.42	0.00	38.31	2.83
1485	1986	6.863645	CCCTACGATCATAATAAGTGTCACAG	59.136	42.308	5.62	0.00	0.00	3.66
1506	2008	3.507411	AGCTTGACACAAGTACTCCCTA	58.493	45.455	12.07	0.00	0.00	3.53
1520	2022	1.401552	TGTGCACAACAAGAGCTTGAC	59.598	47.619	19.28	4.27	42.93	3.18
1529	2031	1.761449	ATCCACTGTGTGCACAACAA	58.239	45.000	23.59	9.55	41.57	2.83
1539	2041	0.179156	GCGCCATTGAATCCACTGTG	60.179	55.000	0.00	0.00	0.00	3.66
1552	2054	1.750778	CCAACAAAATAGGAGCGCCAT	59.249	47.619	9.88	0.00	36.29	4.40
1584	2086	3.532232	AGGTCTCTAGGAATCCAGTACCA	59.468	47.826	0.61	0.00	0.00	3.25
1708	2212	7.585210	GTCCTTTAAATGTCGTAACTTGAACAC	59.415	37.037	0.00	0.00	0.00	3.32
1723	2227	8.028938	CCCTATTTTCACAGTGTCCTTTAAATG	58.971	37.037	0.00	0.00	0.00	2.32
1752	2256	8.740123	ACATAATCAACACCGTAATGGATAAA	57.260	30.769	0.00	0.00	42.00	1.40
1760	2264	7.829725	ACTAGTGTACATAATCAACACCGTAA	58.170	34.615	0.00	0.00	43.58	3.18
1761	2265	7.395190	ACTAGTGTACATAATCAACACCGTA	57.605	36.000	0.00	0.00	43.58	4.02
1775	2280	3.077484	ACGGAGGCTAACTAGTGTACA	57.923	47.619	0.00	0.00	0.00	2.90
1823	2328	3.219052	ACCGTTTCGAGAGATGTCTTC	57.781	47.619	0.00	0.00	41.60	2.87
1836	2341	5.963586	CACACAGAAGTTCTTAAACCGTTTC	59.036	40.000	1.56	0.00	35.92	2.78
1931	2446	0.106894	GGCCAAATAGGACGAGGAGG	59.893	60.000	0.00	0.00	41.22	4.30
2054	2569	9.726438	GCTGATTACATTATACTCTTTATGGGT	57.274	33.333	0.00	0.00	0.00	4.51
2086	2603	5.001874	TGGACGATGAGTAATCTATACGCT	58.998	41.667	0.00	0.00	32.61	5.07
2129	2646	5.196695	AGCTAAGGAGGATGGTCAATTTTC	58.803	41.667	0.00	0.00	0.00	2.29
2130	2647	5.044550	AGAGCTAAGGAGGATGGTCAATTTT	60.045	40.000	0.00	0.00	0.00	1.82
2298	2817	5.594926	CAAGCTTGACTGAACAATTTTCCT	58.405	37.500	22.31	0.00	0.00	3.36
2312	2833	2.991250	TCCCTATCTTGCAAGCTTGAC	58.009	47.619	30.39	20.19	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.