Multiple sequence alignment - TraesCS7B01G463200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G463200 chr7B 100.000 3224 0 0 1 3224 720133718 720130495 0.000000e+00 5954.0
1 TraesCS7B01G463200 chr7B 90.180 1497 129 9 945 2436 720223693 720222210 0.000000e+00 1934.0
2 TraesCS7B01G463200 chr7B 84.580 441 53 6 1 438 720224557 720224129 1.070000e-114 424.0
3 TraesCS7B01G463200 chr7B 86.813 364 35 4 2863 3224 720495310 720495662 8.380000e-106 394.0
4 TraesCS7B01G463200 chr7B 85.989 364 41 2 2863 3224 720156519 720156874 6.530000e-102 381.0
5 TraesCS7B01G463200 chr7B 80.420 429 68 10 2433 2855 720494824 720495242 2.410000e-81 313.0
6 TraesCS7B01G463200 chr7A 85.945 1053 141 7 1015 2062 733434405 733433355 0.000000e+00 1118.0
7 TraesCS7B01G463200 chr5B 82.694 1017 161 14 1082 2091 656235125 656234117 0.000000e+00 889.0
8 TraesCS7B01G463200 chr5A 83.830 940 145 6 1112 2048 649193982 649193047 0.000000e+00 887.0
9 TraesCS7B01G463200 chr5A 80.769 1014 183 8 1038 2045 565602795 565603802 0.000000e+00 782.0
10 TraesCS7B01G463200 chr6B 82.220 1018 172 8 1038 2052 37632838 37633849 0.000000e+00 869.0
11 TraesCS7B01G463200 chr5D 82.318 1001 172 4 1052 2050 447687231 447688228 0.000000e+00 863.0
12 TraesCS7B01G463200 chr5D 100.000 28 0 0 445 472 1866870 1866897 6.000000e-03 52.8
13 TraesCS7B01G463200 chr6D 82.094 955 162 8 1101 2052 22126021 22125073 0.000000e+00 808.0
14 TraesCS7B01G463200 chr6A 82.203 944 160 8 1112 2051 39442933 39441994 0.000000e+00 806.0
15 TraesCS7B01G463200 chr2D 86.813 364 38 5 2863 3224 22610332 22610687 6.480000e-107 398.0
16 TraesCS7B01G463200 chrUn 86.427 361 39 2 2866 3224 429443913 429443561 1.400000e-103 387.0
17 TraesCS7B01G463200 chrUn 86.150 361 40 5 2866 3224 357286986 357286634 6.530000e-102 381.0
18 TraesCS7B01G463200 chrUn 89.640 222 23 0 2863 3084 475152227 475152448 1.890000e-72 283.0
19 TraesCS7B01G463200 chrUn 89.730 185 19 0 2866 3050 475558497 475558313 1.500000e-58 237.0
20 TraesCS7B01G463200 chr2B 85.989 364 41 5 2863 3224 9077087 9077442 6.530000e-102 381.0
21 TraesCS7B01G463200 chr7D 84.527 349 42 5 2877 3222 622231139 622230800 5.150000e-88 335.0
22 TraesCS7B01G463200 chr2A 100.000 28 0 0 445 472 570010019 570010046 6.000000e-03 52.8
23 TraesCS7B01G463200 chr1A 100.000 28 0 0 445 472 518695343 518695370 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G463200 chr7B 720130495 720133718 3223 True 5954.0 5954 100.0000 1 3224 1 chr7B.!!$R1 3223
1 TraesCS7B01G463200 chr7B 720222210 720224557 2347 True 1179.0 1934 87.3800 1 2436 2 chr7B.!!$R2 2435
2 TraesCS7B01G463200 chr7B 720494824 720495662 838 False 353.5 394 83.6165 2433 3224 2 chr7B.!!$F2 791
3 TraesCS7B01G463200 chr7A 733433355 733434405 1050 True 1118.0 1118 85.9450 1015 2062 1 chr7A.!!$R1 1047
4 TraesCS7B01G463200 chr5B 656234117 656235125 1008 True 889.0 889 82.6940 1082 2091 1 chr5B.!!$R1 1009
5 TraesCS7B01G463200 chr5A 649193047 649193982 935 True 887.0 887 83.8300 1112 2048 1 chr5A.!!$R1 936
6 TraesCS7B01G463200 chr5A 565602795 565603802 1007 False 782.0 782 80.7690 1038 2045 1 chr5A.!!$F1 1007
7 TraesCS7B01G463200 chr6B 37632838 37633849 1011 False 869.0 869 82.2200 1038 2052 1 chr6B.!!$F1 1014
8 TraesCS7B01G463200 chr5D 447687231 447688228 997 False 863.0 863 82.3180 1052 2050 1 chr5D.!!$F2 998
9 TraesCS7B01G463200 chr6D 22125073 22126021 948 True 808.0 808 82.0940 1101 2052 1 chr6D.!!$R1 951
10 TraesCS7B01G463200 chr6A 39441994 39442933 939 True 806.0 806 82.2030 1112 2051 1 chr6A.!!$R1 939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 489 0.03759 ACATCCCGCAAAGGTTAGCA 59.962 50.0 0.0 0.0 38.74 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2466 2531 0.30289 CGCGTCTCATTCTTCATGGC 59.697 55.0 0.0 0.0 33.07 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.066573 CAGACACACATCTCCCAGGAC 60.067 57.143 0.00 0.00 0.00 3.85
67 68 0.972983 ACATCTCCCAGGACTCCACG 60.973 60.000 0.00 0.00 0.00 4.94
70 71 4.715130 TCCCAGGACTCCACGGGG 62.715 72.222 18.45 15.07 38.55 5.73
103 104 1.127567 AGTTGAGTGTGGGCTGGCTA 61.128 55.000 0.00 0.00 0.00 3.93
104 105 0.674895 GTTGAGTGTGGGCTGGCTAG 60.675 60.000 0.00 0.00 0.00 3.42
105 106 1.841302 TTGAGTGTGGGCTGGCTAGG 61.841 60.000 0.00 0.00 0.00 3.02
127 128 4.717629 CAGAGTGCGTTCGCCGGA 62.718 66.667 5.05 0.00 36.94 5.14
130 131 2.358247 AGTGCGTTCGCCGGAAAT 60.358 55.556 5.05 0.00 39.18 2.17
134 135 2.160221 GCGTTCGCCGGAAATACGA 61.160 57.895 18.65 9.57 36.94 3.43
139 140 0.456628 TCGCCGGAAATACGATGTCA 59.543 50.000 5.05 0.00 35.47 3.58
141 142 0.575390 GCCGGAAATACGATGTCACG 59.425 55.000 5.05 0.00 39.31 4.35
148 149 1.139816 ATACGATGTCACGTGCGCTG 61.140 55.000 11.67 3.37 46.02 5.18
154 155 2.512745 TCACGTGCGCTGGTGTTT 60.513 55.556 23.84 0.00 35.67 2.83
157 158 2.403378 ACGTGCGCTGGTGTTTGTT 61.403 52.632 9.73 0.00 0.00 2.83
162 163 1.945662 CGCTGGTGTTTGTTGCAGC 60.946 57.895 0.00 0.00 35.19 5.25
163 164 1.141449 GCTGGTGTTTGTTGCAGCA 59.859 52.632 0.00 0.00 41.29 4.41
166 167 1.180907 TGGTGTTTGTTGCAGCAGAA 58.819 45.000 2.72 0.00 39.10 3.02
174 175 0.250727 GTTGCAGCAGAAGGGTGGTA 60.251 55.000 0.00 0.00 45.14 3.25
179 180 1.754803 CAGCAGAAGGGTGGTACGATA 59.245 52.381 0.00 0.00 41.32 2.92
181 182 2.167900 AGCAGAAGGGTGGTACGATAAC 59.832 50.000 0.00 0.00 0.00 1.89
184 185 2.764572 AGAAGGGTGGTACGATAACCTG 59.235 50.000 1.30 0.00 40.44 4.00
186 187 0.179065 GGGTGGTACGATAACCTGGC 60.179 60.000 0.00 0.00 40.44 4.85
190 191 2.934553 GTGGTACGATAACCTGGCTTTC 59.065 50.000 0.00 0.00 40.44 2.62
196 197 0.107165 ATAACCTGGCTTTCTCCGGC 60.107 55.000 0.00 0.00 0.00 6.13
197 198 2.515996 TAACCTGGCTTTCTCCGGCG 62.516 60.000 0.00 0.00 0.00 6.46
202 203 3.793144 GCTTTCTCCGGCGTGCTG 61.793 66.667 6.01 0.00 0.00 4.41
217 218 2.595095 CTGGGCCCCGATAAGCAA 59.405 61.111 22.27 0.00 0.00 3.91
220 221 2.518587 GGCCCCGATAAGCAACCC 60.519 66.667 0.00 0.00 0.00 4.11
221 222 2.900337 GCCCCGATAAGCAACCCG 60.900 66.667 0.00 0.00 0.00 5.28
222 223 2.904905 CCCCGATAAGCAACCCGA 59.095 61.111 0.00 0.00 0.00 5.14
223 224 1.450211 CCCCGATAAGCAACCCGAT 59.550 57.895 0.00 0.00 0.00 4.18
224 225 0.682852 CCCCGATAAGCAACCCGATA 59.317 55.000 0.00 0.00 0.00 2.92
225 226 1.071071 CCCCGATAAGCAACCCGATAA 59.929 52.381 0.00 0.00 0.00 1.75
226 227 2.413837 CCCGATAAGCAACCCGATAAG 58.586 52.381 0.00 0.00 0.00 1.73
227 228 1.798813 CCGATAAGCAACCCGATAAGC 59.201 52.381 0.00 0.00 0.00 3.09
228 229 2.479837 CGATAAGCAACCCGATAAGCA 58.520 47.619 0.00 0.00 0.00 3.91
229 230 2.869801 CGATAAGCAACCCGATAAGCAA 59.130 45.455 0.00 0.00 0.00 3.91
230 231 3.303132 CGATAAGCAACCCGATAAGCAAC 60.303 47.826 0.00 0.00 0.00 4.17
231 232 1.904287 AAGCAACCCGATAAGCAACA 58.096 45.000 0.00 0.00 0.00 3.33
232 233 1.453155 AGCAACCCGATAAGCAACAG 58.547 50.000 0.00 0.00 0.00 3.16
233 234 1.165270 GCAACCCGATAAGCAACAGT 58.835 50.000 0.00 0.00 0.00 3.55
234 235 1.130561 GCAACCCGATAAGCAACAGTC 59.869 52.381 0.00 0.00 0.00 3.51
235 236 2.422597 CAACCCGATAAGCAACAGTCA 58.577 47.619 0.00 0.00 0.00 3.41
236 237 2.386661 ACCCGATAAGCAACAGTCAG 57.613 50.000 0.00 0.00 0.00 3.51
241 242 2.675032 CGATAAGCAACAGTCAGCCAGA 60.675 50.000 0.00 0.00 0.00 3.86
245 246 2.031516 CAACAGTCAGCCAGAGCCG 61.032 63.158 0.00 0.00 41.25 5.52
247 248 2.433838 CAGTCAGCCAGAGCCGTG 60.434 66.667 0.00 0.00 41.25 4.94
277 278 5.246429 GGTCCCTATTATTCTACAGTGGGAG 59.754 48.000 0.00 0.00 42.40 4.30
312 313 4.986054 AACCCAACTGTACTACATCCAA 57.014 40.909 0.00 0.00 0.00 3.53
336 340 2.558286 GCAAGAGCAAGCACAGCCA 61.558 57.895 0.00 0.00 41.58 4.75
378 382 1.069204 CTATACATGCCACTGCGAGGT 59.931 52.381 0.00 0.00 41.78 3.85
386 390 2.094659 CACTGCGAGGTTGGCTACG 61.095 63.158 0.00 0.00 0.00 3.51
401 405 1.304381 TACGACGGCAACCCCTACT 60.304 57.895 0.00 0.00 0.00 2.57
405 409 3.072468 CGGCAACCCCTACTCCGA 61.072 66.667 0.00 0.00 42.43 4.55
407 411 2.183555 GCAACCCCTACTCCGACG 59.816 66.667 0.00 0.00 0.00 5.12
411 415 2.124983 CCCCTACTCCGACGACGA 60.125 66.667 9.28 0.00 42.66 4.20
436 440 1.474077 CAGGGATGCAAAGGTTAGCAC 59.526 52.381 0.00 0.00 44.49 4.40
437 441 1.075374 AGGGATGCAAAGGTTAGCACA 59.925 47.619 0.00 0.00 44.49 4.57
438 442 2.102578 GGGATGCAAAGGTTAGCACAT 58.897 47.619 0.00 0.00 44.49 3.21
439 443 3.053693 AGGGATGCAAAGGTTAGCACATA 60.054 43.478 0.00 0.00 44.49 2.29
440 444 3.066760 GGGATGCAAAGGTTAGCACATAC 59.933 47.826 0.00 0.00 44.49 2.39
441 445 3.947834 GGATGCAAAGGTTAGCACATACT 59.052 43.478 0.00 0.00 44.49 2.12
442 446 4.399303 GGATGCAAAGGTTAGCACATACTT 59.601 41.667 0.00 0.00 44.49 2.24
443 447 5.588648 GGATGCAAAGGTTAGCACATACTTA 59.411 40.000 0.00 0.00 44.49 2.24
444 448 6.263168 GGATGCAAAGGTTAGCACATACTTAT 59.737 38.462 0.00 0.00 44.49 1.73
445 449 6.677781 TGCAAAGGTTAGCACATACTTATC 57.322 37.500 0.00 0.00 35.51 1.75
446 450 5.588648 TGCAAAGGTTAGCACATACTTATCC 59.411 40.000 0.00 0.00 35.51 2.59
447 451 5.008712 GCAAAGGTTAGCACATACTTATCCC 59.991 44.000 0.00 0.00 0.00 3.85
448 452 5.968676 AAGGTTAGCACATACTTATCCCA 57.031 39.130 0.00 0.00 0.00 4.37
449 453 6.515512 AAGGTTAGCACATACTTATCCCAT 57.484 37.500 0.00 0.00 0.00 4.00
450 454 7.626999 AAGGTTAGCACATACTTATCCCATA 57.373 36.000 0.00 0.00 0.00 2.74
451 455 7.626999 AGGTTAGCACATACTTATCCCATAA 57.373 36.000 0.00 0.00 0.00 1.90
452 456 8.219660 AGGTTAGCACATACTTATCCCATAAT 57.780 34.615 0.00 0.00 0.00 1.28
453 457 9.333961 AGGTTAGCACATACTTATCCCATAATA 57.666 33.333 0.00 0.00 0.00 0.98
479 483 6.391227 AGATTTTATTACATCCCGCAAAGG 57.609 37.500 0.00 0.00 40.63 3.11
480 484 5.891551 AGATTTTATTACATCCCGCAAAGGT 59.108 36.000 0.00 0.00 38.74 3.50
481 485 5.986501 TTTTATTACATCCCGCAAAGGTT 57.013 34.783 0.00 0.00 38.74 3.50
482 486 7.558444 AGATTTTATTACATCCCGCAAAGGTTA 59.442 33.333 0.00 0.00 38.74 2.85
483 487 6.687081 TTTATTACATCCCGCAAAGGTTAG 57.313 37.500 0.00 0.00 38.74 2.34
484 488 2.032680 TACATCCCGCAAAGGTTAGC 57.967 50.000 0.00 0.00 38.74 3.09
485 489 0.037590 ACATCCCGCAAAGGTTAGCA 59.962 50.000 0.00 0.00 38.74 3.49
486 490 0.451783 CATCCCGCAAAGGTTAGCAC 59.548 55.000 0.00 0.00 38.74 4.40
487 491 0.037590 ATCCCGCAAAGGTTAGCACA 59.962 50.000 0.00 0.00 38.74 4.57
488 492 0.037590 TCCCGCAAAGGTTAGCACAT 59.962 50.000 0.00 0.00 38.74 3.21
489 493 1.279558 TCCCGCAAAGGTTAGCACATA 59.720 47.619 0.00 0.00 38.74 2.29
490 494 1.400494 CCCGCAAAGGTTAGCACATAC 59.600 52.381 0.00 0.00 38.74 2.39
491 495 2.356135 CCGCAAAGGTTAGCACATACT 58.644 47.619 0.00 0.00 34.51 2.12
492 496 2.747446 CCGCAAAGGTTAGCACATACTT 59.253 45.455 0.00 0.00 34.51 2.24
493 497 3.181510 CCGCAAAGGTTAGCACATACTTC 60.182 47.826 0.00 0.00 34.51 3.01
494 498 3.181510 CGCAAAGGTTAGCACATACTTCC 60.182 47.826 0.00 0.00 0.00 3.46
495 499 4.010349 GCAAAGGTTAGCACATACTTCCT 58.990 43.478 0.00 0.00 0.00 3.36
496 500 4.095036 GCAAAGGTTAGCACATACTTCCTC 59.905 45.833 0.00 0.00 0.00 3.71
497 501 5.491982 CAAAGGTTAGCACATACTTCCTCT 58.508 41.667 0.00 0.00 0.00 3.69
498 502 4.744795 AGGTTAGCACATACTTCCTCTG 57.255 45.455 0.00 0.00 0.00 3.35
499 503 4.097418 AGGTTAGCACATACTTCCTCTGT 58.903 43.478 0.00 0.00 0.00 3.41
500 504 4.160626 AGGTTAGCACATACTTCCTCTGTC 59.839 45.833 0.00 0.00 0.00 3.51
501 505 2.949451 AGCACATACTTCCTCTGTCG 57.051 50.000 0.00 0.00 0.00 4.35
502 506 1.134965 AGCACATACTTCCTCTGTCGC 60.135 52.381 0.00 0.00 0.00 5.19
503 507 1.404181 GCACATACTTCCTCTGTCGCA 60.404 52.381 0.00 0.00 0.00 5.10
504 508 2.739932 GCACATACTTCCTCTGTCGCAT 60.740 50.000 0.00 0.00 0.00 4.73
505 509 3.490933 GCACATACTTCCTCTGTCGCATA 60.491 47.826 0.00 0.00 0.00 3.14
506 510 4.682787 CACATACTTCCTCTGTCGCATAA 58.317 43.478 0.00 0.00 0.00 1.90
507 511 5.292765 CACATACTTCCTCTGTCGCATAAT 58.707 41.667 0.00 0.00 0.00 1.28
508 512 6.447162 CACATACTTCCTCTGTCGCATAATA 58.553 40.000 0.00 0.00 0.00 0.98
509 513 7.093354 CACATACTTCCTCTGTCGCATAATAT 58.907 38.462 0.00 0.00 0.00 1.28
510 514 8.244113 CACATACTTCCTCTGTCGCATAATATA 58.756 37.037 0.00 0.00 0.00 0.86
511 515 8.803235 ACATACTTCCTCTGTCGCATAATATAA 58.197 33.333 0.00 0.00 0.00 0.98
512 516 9.809096 CATACTTCCTCTGTCGCATAATATAAT 57.191 33.333 0.00 0.00 0.00 1.28
544 548 9.985730 ATGCAACAAAATCTTATGTTATATGGG 57.014 29.630 0.00 0.00 37.66 4.00
545 549 9.194972 TGCAACAAAATCTTATGTTATATGGGA 57.805 29.630 0.00 0.00 37.66 4.37
546 550 9.463443 GCAACAAAATCTTATGTTATATGGGAC 57.537 33.333 0.00 0.00 37.66 4.46
547 551 9.663904 CAACAAAATCTTATGTTATATGGGACG 57.336 33.333 0.00 0.00 37.66 4.79
548 552 8.391075 ACAAAATCTTATGTTATATGGGACGG 57.609 34.615 0.00 0.00 0.00 4.79
549 553 8.215050 ACAAAATCTTATGTTATATGGGACGGA 58.785 33.333 0.00 0.00 0.00 4.69
550 554 9.062524 CAAAATCTTATGTTATATGGGACGGAA 57.937 33.333 0.00 0.00 0.00 4.30
551 555 8.848474 AAATCTTATGTTATATGGGACGGAAG 57.152 34.615 0.00 0.00 0.00 3.46
552 556 6.354794 TCTTATGTTATATGGGACGGAAGG 57.645 41.667 0.00 0.00 0.00 3.46
553 557 6.079336 TCTTATGTTATATGGGACGGAAGGA 58.921 40.000 0.00 0.00 0.00 3.36
554 558 4.891992 ATGTTATATGGGACGGAAGGAG 57.108 45.455 0.00 0.00 0.00 3.69
557 561 1.734655 ATATGGGACGGAAGGAGCAT 58.265 50.000 0.00 0.00 0.00 3.79
625 629 9.775854 ATAATTATCTCTAGTATGCATGCATCC 57.224 33.333 35.35 25.22 37.82 3.51
626 630 6.610075 TTATCTCTAGTATGCATGCATCCA 57.390 37.500 35.35 17.74 37.82 3.41
634 638 2.484742 TGCATGCATCCATAGCCTAG 57.515 50.000 18.46 0.00 0.00 3.02
648 652 6.724441 TCCATAGCCTAGCTAGCAATTAAGTA 59.276 38.462 18.83 0.00 44.66 2.24
686 690 5.437191 TCCCTCCTATCTTGTTTTTCTCC 57.563 43.478 0.00 0.00 0.00 3.71
699 703 1.267574 TTTCTCCAGCTCCGGATGCT 61.268 55.000 18.96 18.96 42.06 3.79
807 813 7.445121 TCAGAAGAGAACTATCAACACACAAT 58.555 34.615 0.00 0.00 0.00 2.71
816 822 9.708222 GAACTATCAACACACAATGACATAATC 57.292 33.333 0.00 0.00 0.00 1.75
824 830 8.114331 ACACACAATGACATAATCTTCACATT 57.886 30.769 0.00 0.00 0.00 2.71
826 832 9.069078 CACACAATGACATAATCTTCACATTTC 57.931 33.333 0.00 0.00 0.00 2.17
841 847 8.939929 TCTTCACATTTCTATGTTGATTCAGTC 58.060 33.333 0.00 0.00 42.29 3.51
842 848 7.615582 TCACATTTCTATGTTGATTCAGTCC 57.384 36.000 0.00 0.00 42.29 3.85
846 852 7.822334 ACATTTCTATGTTGATTCAGTCCGTTA 59.178 33.333 0.00 0.00 42.29 3.18
857 863 6.816640 TGATTCAGTCCGTTATTTCTTAGTGG 59.183 38.462 0.00 0.00 0.00 4.00
888 894 9.352784 GAGTCTAGATTATTTTGAGATCCGATG 57.647 37.037 0.00 0.00 0.00 3.84
892 898 7.432350 AGATTATTTTGAGATCCGATGAAGC 57.568 36.000 0.00 0.00 0.00 3.86
894 900 2.672961 TTTGAGATCCGATGAAGCGT 57.327 45.000 0.00 0.00 0.00 5.07
907 913 6.929049 TCCGATGAAGCGTATTCTATTCAATT 59.071 34.615 4.52 0.00 35.47 2.32
910 916 7.948895 CGATGAAGCGTATTCTATTCAATTCAG 59.051 37.037 4.52 0.00 35.47 3.02
933 939 8.367911 TCAGACAGAGTACAAGTCATTTATTGT 58.632 33.333 12.77 0.00 42.15 2.71
935 941 9.561069 AGACAGAGTACAAGTCATTTATTGTTT 57.439 29.630 12.77 0.00 40.09 2.83
962 1016 8.078959 TGTATAGACACAAACACACACAATAC 57.921 34.615 0.00 0.00 0.00 1.89
963 1017 7.929245 TGTATAGACACAAACACACACAATACT 59.071 33.333 0.00 0.00 0.00 2.12
966 1020 4.265893 ACACAAACACACACAATACTCCA 58.734 39.130 0.00 0.00 0.00 3.86
970 1024 1.351017 ACACACACAATACTCCAGGGG 59.649 52.381 0.00 0.00 0.00 4.79
972 1026 1.628846 ACACACAATACTCCAGGGGAC 59.371 52.381 0.00 0.00 0.00 4.46
984 1038 4.157120 GGGGACCGGATGACCACG 62.157 72.222 9.46 0.00 40.86 4.94
1006 1060 3.402058 ACTAACGCGTGTCTATGTCTC 57.598 47.619 14.98 0.00 0.00 3.36
1110 1165 6.959639 TCCAGCAAAGTTAAACAGAGAAAT 57.040 33.333 0.00 0.00 0.00 2.17
1119 1174 8.947055 AAGTTAAACAGAGAAATGCACAAATT 57.053 26.923 0.00 0.00 0.00 1.82
1121 1176 9.034544 AGTTAAACAGAGAAATGCACAAATTTC 57.965 29.630 2.86 2.86 43.79 2.17
1149 1204 5.507077 CGAAAGTTCTTTGACCAAAATCGA 58.493 37.500 2.38 0.00 0.00 3.59
1182 1237 3.758023 TGCAACAATTGGTATCACAGAGG 59.242 43.478 10.83 0.00 0.00 3.69
1222 1277 6.868826 AGGATGATCATACCCTTAGAAGAGA 58.131 40.000 14.65 0.00 0.00 3.10
1425 1480 6.727215 TCACCGAAATGTGGTAAAACTTTAC 58.273 36.000 4.11 4.11 41.68 2.01
1507 1562 6.903516 ACCCTTTATGATCATCTTCACATCA 58.096 36.000 12.53 0.00 0.00 3.07
1626 1681 6.365518 CCATCATTCATAGAGATGTGAAGTCG 59.634 42.308 0.00 0.00 37.72 4.18
1638 1693 6.100004 AGATGTGAAGTCGGTTAACATACTG 58.900 40.000 8.10 0.00 40.01 2.74
1701 1756 6.591935 AGCTTCAAGATATATTTCGGTGGAA 58.408 36.000 0.00 0.00 0.00 3.53
1704 1759 7.857885 GCTTCAAGATATATTTCGGTGGAAAAG 59.142 37.037 0.00 0.00 44.76 2.27
1752 1807 6.195600 GGTACAATAGGATATTTGGACCCA 57.804 41.667 7.74 0.00 46.81 4.51
1827 1882 3.937706 GTGTCATGCTCATAGAACTGCTT 59.062 43.478 0.00 0.00 0.00 3.91
1836 1891 5.638596 TCATAGAACTGCTTACTCGACAA 57.361 39.130 0.00 0.00 0.00 3.18
1852 1908 6.924111 ACTCGACAAAAGCCATTTTCATATT 58.076 32.000 0.00 0.00 36.47 1.28
2013 2074 9.213799 GCATGTATAAAATTAAGAGGAGAGGAG 57.786 37.037 0.00 0.00 0.00 3.69
2099 2163 3.256383 TCAGATGAATTTGGCACCAACAG 59.744 43.478 0.45 0.00 35.46 3.16
2104 2168 3.181477 TGAATTTGGCACCAACAGACTTG 60.181 43.478 0.45 0.00 35.46 3.16
2111 2175 2.682856 GCACCAACAGACTTGAGAACAA 59.317 45.455 0.00 0.00 34.65 2.83
2112 2176 3.128589 GCACCAACAGACTTGAGAACAAA 59.871 43.478 0.00 0.00 35.49 2.83
2115 2179 3.947834 CCAACAGACTTGAGAACAAAGGT 59.052 43.478 0.00 0.00 35.49 3.50
2119 2183 4.191544 CAGACTTGAGAACAAAGGTGTCA 58.808 43.478 0.00 0.00 36.80 3.58
2121 2185 2.936498 ACTTGAGAACAAAGGTGTCACG 59.064 45.455 0.00 0.00 36.80 4.35
2124 2188 3.804036 TGAGAACAAAGGTGTCACGATT 58.196 40.909 0.00 0.00 36.80 3.34
2128 2192 6.073276 TGAGAACAAAGGTGTCACGATTAATG 60.073 38.462 0.00 0.00 36.80 1.90
2140 2204 2.872245 ACGATTAATGCTCCATCAACCG 59.128 45.455 0.00 0.00 0.00 4.44
2148 2212 1.412710 GCTCCATCAACCGTAGATGGA 59.587 52.381 21.90 21.90 0.00 3.41
2156 2220 2.673368 CAACCGTAGATGGAAGAAGCAC 59.327 50.000 0.00 0.00 0.00 4.40
2160 2224 3.181471 CCGTAGATGGAAGAAGCACTGAT 60.181 47.826 0.00 0.00 0.00 2.90
2164 2228 3.458857 AGATGGAAGAAGCACTGATGGAT 59.541 43.478 0.00 0.00 0.00 3.41
2175 2239 3.181486 GCACTGATGGATCGACTAGACAA 60.181 47.826 0.00 0.00 0.00 3.18
2194 2258 6.578023 AGACAATACAGTATGGAAGAAGAGC 58.422 40.000 1.53 0.00 43.62 4.09
2208 2272 0.392193 AAGAGCTGGCCATGTCTTCG 60.392 55.000 19.49 3.02 0.00 3.79
2209 2273 1.219124 GAGCTGGCCATGTCTTCGA 59.781 57.895 5.51 0.00 0.00 3.71
2211 2275 1.817099 GCTGGCCATGTCTTCGAGG 60.817 63.158 5.51 0.00 0.00 4.63
2212 2276 1.599047 CTGGCCATGTCTTCGAGGT 59.401 57.895 5.51 0.00 0.00 3.85
2218 2282 2.891580 GCCATGTCTTCGAGGTATCCTA 59.108 50.000 0.00 0.00 31.76 2.94
2222 2286 5.314529 CATGTCTTCGAGGTATCCTAGGTA 58.685 45.833 9.08 0.00 31.76 3.08
2228 2292 5.480642 TCGAGGTATCCTAGGTAGTACTG 57.519 47.826 9.08 5.97 31.76 2.74
2236 2300 4.989277 TCCTAGGTAGTACTGTTGACACA 58.011 43.478 9.08 0.00 0.00 3.72
2246 2310 4.882671 ACTGTTGACACATGAGTTCAAC 57.117 40.909 21.56 21.56 41.20 3.18
2253 2317 7.931407 TGTTGACACATGAGTTCAACTTATAGT 59.069 33.333 25.20 0.00 41.29 2.12
2268 2332 8.319146 TCAACTTATAGTCTTTTTCAGTAGGGG 58.681 37.037 0.00 0.00 0.00 4.79
2269 2333 8.319146 CAACTTATAGTCTTTTTCAGTAGGGGA 58.681 37.037 0.00 0.00 0.00 4.81
2275 2339 7.331089 AGTCTTTTTCAGTAGGGGACTTATT 57.669 36.000 0.00 0.00 43.67 1.40
2277 2341 5.944007 TCTTTTTCAGTAGGGGACTTATTGC 59.056 40.000 0.00 0.00 43.67 3.56
2282 2346 4.137543 CAGTAGGGGACTTATTGCCATTC 58.862 47.826 0.00 0.00 43.67 2.67
2283 2347 2.348411 AGGGGACTTATTGCCATTCG 57.652 50.000 0.00 0.00 37.44 3.34
2288 2352 4.215613 GGGGACTTATTGCCATTCGATTAC 59.784 45.833 0.00 0.00 37.48 1.89
2292 2356 6.292919 GGACTTATTGCCATTCGATTACTGAC 60.293 42.308 0.00 0.00 0.00 3.51
2299 2363 6.403049 TGCCATTCGATTACTGACTCTAAAA 58.597 36.000 0.00 0.00 0.00 1.52
2302 2366 6.258068 CCATTCGATTACTGACTCTAAAACCC 59.742 42.308 0.00 0.00 0.00 4.11
2304 2368 6.600882 TCGATTACTGACTCTAAAACCCTT 57.399 37.500 0.00 0.00 0.00 3.95
2305 2369 6.395629 TCGATTACTGACTCTAAAACCCTTG 58.604 40.000 0.00 0.00 0.00 3.61
2306 2370 6.209986 TCGATTACTGACTCTAAAACCCTTGA 59.790 38.462 0.00 0.00 0.00 3.02
2309 2373 9.232473 GATTACTGACTCTAAAACCCTTGATTT 57.768 33.333 0.00 0.00 0.00 2.17
2312 2376 7.290813 ACTGACTCTAAAACCCTTGATTTTCT 58.709 34.615 0.00 0.00 31.79 2.52
2313 2377 7.445707 ACTGACTCTAAAACCCTTGATTTTCTC 59.554 37.037 0.00 0.00 31.79 2.87
2314 2378 7.287061 TGACTCTAAAACCCTTGATTTTCTCA 58.713 34.615 0.00 0.00 31.79 3.27
2315 2379 7.944554 TGACTCTAAAACCCTTGATTTTCTCAT 59.055 33.333 0.00 0.00 32.72 2.90
2316 2380 8.341892 ACTCTAAAACCCTTGATTTTCTCATC 57.658 34.615 0.00 0.00 32.72 2.92
2317 2381 8.166726 ACTCTAAAACCCTTGATTTTCTCATCT 58.833 33.333 0.00 0.00 32.72 2.90
2318 2382 8.940397 TCTAAAACCCTTGATTTTCTCATCTT 57.060 30.769 0.00 0.00 32.72 2.40
2319 2383 8.796475 TCTAAAACCCTTGATTTTCTCATCTTG 58.204 33.333 0.00 0.00 32.72 3.02
2320 2384 7.601705 AAAACCCTTGATTTTCTCATCTTGA 57.398 32.000 0.00 0.00 32.72 3.02
2321 2385 7.601705 AAACCCTTGATTTTCTCATCTTGAA 57.398 32.000 0.00 0.00 32.72 2.69
2322 2386 6.581171 ACCCTTGATTTTCTCATCTTGAAC 57.419 37.500 0.00 0.00 32.72 3.18
2323 2387 6.310149 ACCCTTGATTTTCTCATCTTGAACT 58.690 36.000 0.00 0.00 32.72 3.01
2324 2388 6.779539 ACCCTTGATTTTCTCATCTTGAACTT 59.220 34.615 0.00 0.00 32.72 2.66
2325 2389 7.288621 ACCCTTGATTTTCTCATCTTGAACTTT 59.711 33.333 0.00 0.00 32.72 2.66
2326 2390 7.597743 CCCTTGATTTTCTCATCTTGAACTTTG 59.402 37.037 0.00 0.00 32.72 2.77
2327 2391 8.139989 CCTTGATTTTCTCATCTTGAACTTTGT 58.860 33.333 0.00 0.00 32.72 2.83
2358 2422 4.558226 TGGTGTGCTTAGAATCTCATGT 57.442 40.909 0.00 0.00 0.00 3.21
2361 2425 6.472016 TGGTGTGCTTAGAATCTCATGTAAA 58.528 36.000 0.00 0.00 0.00 2.01
2362 2426 7.112122 TGGTGTGCTTAGAATCTCATGTAAAT 58.888 34.615 0.00 0.00 0.00 1.40
2378 2442 7.557724 TCATGTAAATTCAATGCATGTGGATT 58.442 30.769 0.00 4.84 38.35 3.01
2445 2510 6.589830 AAGATGATACAAGCACGAACATAC 57.410 37.500 0.00 0.00 0.00 2.39
2447 2512 4.195225 TGATACAAGCACGAACATACCA 57.805 40.909 0.00 0.00 0.00 3.25
2448 2513 4.180817 TGATACAAGCACGAACATACCAG 58.819 43.478 0.00 0.00 0.00 4.00
2450 2515 0.447801 CAAGCACGAACATACCAGCC 59.552 55.000 0.00 0.00 0.00 4.85
2453 2518 1.094785 GCACGAACATACCAGCCATT 58.905 50.000 0.00 0.00 0.00 3.16
2454 2519 1.064060 GCACGAACATACCAGCCATTC 59.936 52.381 0.00 0.00 0.00 2.67
2456 2521 2.609459 CACGAACATACCAGCCATTCTC 59.391 50.000 0.00 0.00 0.00 2.87
2457 2522 2.236146 ACGAACATACCAGCCATTCTCA 59.764 45.455 0.00 0.00 0.00 3.27
2458 2523 2.868583 CGAACATACCAGCCATTCTCAG 59.131 50.000 0.00 0.00 0.00 3.35
2459 2524 3.430790 CGAACATACCAGCCATTCTCAGA 60.431 47.826 0.00 0.00 0.00 3.27
2461 2526 3.378512 ACATACCAGCCATTCTCAGAGA 58.621 45.455 0.00 0.00 0.00 3.10
2463 2528 4.141756 ACATACCAGCCATTCTCAGAGAAG 60.142 45.833 17.91 6.99 37.69 2.85
2465 2530 3.113824 ACCAGCCATTCTCAGAGAAGAT 58.886 45.455 17.91 1.87 37.69 2.40
2466 2531 3.118334 ACCAGCCATTCTCAGAGAAGATG 60.118 47.826 17.91 13.36 37.69 2.90
2467 2532 2.873472 CAGCCATTCTCAGAGAAGATGC 59.127 50.000 17.91 17.71 37.69 3.91
2468 2533 2.158784 AGCCATTCTCAGAGAAGATGCC 60.159 50.000 17.91 3.14 37.69 4.40
2477 2545 5.130643 TCTCAGAGAAGATGCCATGAAGAAT 59.869 40.000 0.00 0.00 0.00 2.40
2482 2550 5.124645 AGAAGATGCCATGAAGAATGAGAC 58.875 41.667 0.00 0.00 38.72 3.36
2485 2553 0.302890 GCCATGAAGAATGAGACGCG 59.697 55.000 3.53 3.53 38.72 6.01
2487 2555 0.302890 CATGAAGAATGAGACGCGGC 59.697 55.000 12.47 7.86 38.72 6.53
2498 2566 2.358247 ACGCGGCGTCTTTCCAAT 60.358 55.556 24.03 0.00 33.69 3.16
2509 2577 2.494870 GTCTTTCCAATGCCAGCTTCAT 59.505 45.455 0.00 0.00 0.00 2.57
2510 2578 3.056322 GTCTTTCCAATGCCAGCTTCATT 60.056 43.478 5.39 5.39 34.74 2.57
2523 2591 1.143305 CTTCATTGAGCCGATAGCCG 58.857 55.000 0.00 0.00 45.47 5.52
2534 2602 0.730834 CGATAGCCGCAGAATCTCCG 60.731 60.000 0.00 0.00 0.00 4.63
2541 2609 1.128692 CCGCAGAATCTCCGTTTCAAC 59.871 52.381 0.00 0.00 0.00 3.18
2546 2614 4.776743 CAGAATCTCCGTTTCAACAGTTG 58.223 43.478 6.99 6.99 0.00 3.16
2547 2615 4.273480 CAGAATCTCCGTTTCAACAGTTGT 59.727 41.667 13.14 0.00 0.00 3.32
2553 2622 9.661563 AATCTCCGTTTCAACAGTTGTATAATA 57.338 29.630 13.14 0.00 0.00 0.98
2569 2638 6.521162 TGTATAATATGAAGGAGAGCGCAAA 58.479 36.000 11.47 0.00 0.00 3.68
2570 2639 7.161404 TGTATAATATGAAGGAGAGCGCAAAT 58.839 34.615 11.47 0.00 0.00 2.32
2571 2640 4.825546 AATATGAAGGAGAGCGCAAATG 57.174 40.909 11.47 0.00 0.00 2.32
2572 2641 2.119801 ATGAAGGAGAGCGCAAATGT 57.880 45.000 11.47 0.00 0.00 2.71
2573 2642 1.159285 TGAAGGAGAGCGCAAATGTG 58.841 50.000 11.47 0.00 0.00 3.21
2611 2680 3.624326 TTTCCAGTTTCATTGTGCTCG 57.376 42.857 0.00 0.00 0.00 5.03
2615 2684 2.549754 CCAGTTTCATTGTGCTCGAAGT 59.450 45.455 0.00 0.00 0.00 3.01
2619 2688 4.814234 AGTTTCATTGTGCTCGAAGTTGTA 59.186 37.500 0.00 0.00 0.00 2.41
2622 2691 3.186409 TCATTGTGCTCGAAGTTGTAAGC 59.814 43.478 0.00 0.00 35.31 3.09
2623 2692 1.508632 TGTGCTCGAAGTTGTAAGCC 58.491 50.000 0.00 0.00 33.79 4.35
2626 2695 0.992802 GCTCGAAGTTGTAAGCCTCG 59.007 55.000 0.00 0.00 0.00 4.63
2634 2703 2.766263 AGTTGTAAGCCTCGATCCATCA 59.234 45.455 0.00 0.00 0.00 3.07
2636 2705 2.388735 TGTAAGCCTCGATCCATCACT 58.611 47.619 0.00 0.00 0.00 3.41
2643 2712 3.126831 CCTCGATCCATCACTAAACAGC 58.873 50.000 0.00 0.00 0.00 4.40
2647 2716 3.183172 CGATCCATCACTAAACAGCATCG 59.817 47.826 0.00 0.00 0.00 3.84
2661 2730 3.066291 AGCATCGATGGTGGTGTTTTA 57.934 42.857 28.07 0.00 37.10 1.52
2672 2741 3.886505 GGTGGTGTTTTAGTCATTGGTCA 59.113 43.478 0.00 0.00 0.00 4.02
2673 2742 4.261447 GGTGGTGTTTTAGTCATTGGTCAC 60.261 45.833 0.00 0.00 0.00 3.67
2682 2751 8.626526 GTTTTAGTCATTGGTCACCTCTTTTAA 58.373 33.333 0.00 0.00 0.00 1.52
2694 2763 6.486993 GTCACCTCTTTTAATCCAACTCTGTT 59.513 38.462 0.00 0.00 0.00 3.16
2697 2766 6.937465 ACCTCTTTTAATCCAACTCTGTTCTC 59.063 38.462 0.00 0.00 0.00 2.87
2700 2769 7.735917 TCTTTTAATCCAACTCTGTTCTCAGA 58.264 34.615 0.00 0.00 46.85 3.27
2763 2832 1.794714 ATGTAGCTGTACCCCTCCAG 58.205 55.000 0.00 0.00 0.00 3.86
2777 2846 1.309950 CTCCAGCATGCTTGGATCAG 58.690 55.000 27.99 18.11 31.97 2.90
2782 2851 1.640069 CATGCTTGGATCAGCGACG 59.360 57.895 0.00 0.00 43.37 5.12
2785 2854 1.153745 GCTTGGATCAGCGACGTCT 60.154 57.895 14.70 0.00 0.00 4.18
2787 2856 1.272781 CTTGGATCAGCGACGTCTTC 58.727 55.000 14.70 5.28 0.00 2.87
2792 2861 1.064208 GATCAGCGACGTCTTCAGCTA 59.936 52.381 14.70 4.75 37.94 3.32
2793 2862 0.879090 TCAGCGACGTCTTCAGCTAA 59.121 50.000 14.70 0.00 37.94 3.09
2818 2887 4.474651 TGATCCTCAACCACCATGTAATCT 59.525 41.667 0.00 0.00 0.00 2.40
2827 2896 3.695556 CCACCATGTAATCTGCAATCACA 59.304 43.478 0.00 0.00 0.00 3.58
2828 2897 4.439153 CCACCATGTAATCTGCAATCACAC 60.439 45.833 0.00 0.00 0.00 3.82
2836 2905 6.539826 TGTAATCTGCAATCACACTAGAATGG 59.460 38.462 0.00 0.00 0.00 3.16
2837 2906 3.877559 TCTGCAATCACACTAGAATGGG 58.122 45.455 0.00 0.00 0.00 4.00
2838 2907 3.519107 TCTGCAATCACACTAGAATGGGA 59.481 43.478 0.00 0.00 36.15 4.37
2839 2908 4.164796 TCTGCAATCACACTAGAATGGGAT 59.835 41.667 0.00 0.00 44.90 3.85
2841 2910 5.368145 TGCAATCACACTAGAATGGGATAC 58.632 41.667 0.00 0.00 42.06 2.24
2859 2928 6.921486 GGATACCAAACCTCCCTTTAAAAA 57.079 37.500 0.00 0.00 0.00 1.94
2905 3034 0.767998 TGCCACCACTACCATTGACA 59.232 50.000 0.00 0.00 0.00 3.58
2909 3038 2.677836 CCACCACTACCATTGACAATCG 59.322 50.000 0.00 0.00 0.00 3.34
2930 3059 2.158696 GGCCATAGCACCAGAAAGATCT 60.159 50.000 0.00 0.00 42.56 2.75
2931 3060 2.877168 GCCATAGCACCAGAAAGATCTG 59.123 50.000 0.00 0.00 44.99 2.90
2932 3061 4.849078 GCCATAGCACCAGAAAGATCTGC 61.849 52.174 0.00 0.00 44.51 4.26
2965 3094 3.152341 CACAAGCATCCTTTTCCTCTGT 58.848 45.455 0.00 0.00 0.00 3.41
2977 3106 5.591877 CCTTTTCCTCTGTTCAATATCCTGG 59.408 44.000 0.00 0.00 0.00 4.45
2991 3120 3.596940 ATCCTGGATACTGTAGACGGT 57.403 47.619 7.59 0.00 39.18 4.83
3067 3196 3.390521 AGCTCGCGGAATGGACCA 61.391 61.111 6.13 0.00 0.00 4.02
3073 3202 2.825836 CGGAATGGACCAGCCTGC 60.826 66.667 12.84 0.00 37.63 4.85
3103 3232 2.345991 GTGTAGGGCGCCAGAACA 59.654 61.111 30.85 24.51 0.00 3.18
3115 3244 1.070134 GCCAGAACAGTGGACAGTGTA 59.930 52.381 12.73 0.00 43.66 2.90
3116 3245 2.755650 CCAGAACAGTGGACAGTGTAC 58.244 52.381 12.73 0.00 43.66 2.90
3118 3247 3.244215 CCAGAACAGTGGACAGTGTACAT 60.244 47.826 12.35 0.00 43.66 2.29
3120 3251 4.816385 CAGAACAGTGGACAGTGTACATTT 59.184 41.667 12.35 5.58 43.66 2.32
3125 3256 4.578516 CAGTGGACAGTGTACATTTTCCAA 59.421 41.667 23.25 8.98 34.95 3.53
3131 3262 4.274950 ACAGTGTACATTTTCCAAACGAGG 59.725 41.667 0.00 0.00 0.00 4.63
3136 3267 1.135689 CATTTTCCAAACGAGGAGGCG 60.136 52.381 0.00 0.00 39.25 5.52
3137 3268 0.887387 TTTTCCAAACGAGGAGGCGG 60.887 55.000 0.00 0.00 39.25 6.13
3139 3270 2.125512 CCAAACGAGGAGGCGGAG 60.126 66.667 0.00 0.00 35.12 4.63
3152 3283 4.452733 CGGAGGAACCCGTGGCTC 62.453 72.222 0.00 0.00 44.23 4.70
3153 3284 4.452733 GGAGGAACCCGTGGCTCG 62.453 72.222 1.28 1.28 39.52 5.03
3184 3315 1.376609 GCCGGCGGAATGAGTCAAAT 61.377 55.000 33.44 0.00 0.00 2.32
3195 3326 3.784701 TGAGTCAAATAGCTCGAGGAC 57.215 47.619 15.58 11.52 34.67 3.85
3203 3334 2.473891 TAGCTCGAGGACGACCCACA 62.474 60.000 15.58 0.00 43.81 4.17
3209 3340 2.668550 GGACGACCCACACCAAGC 60.669 66.667 0.00 0.00 34.14 4.01
3213 3344 2.985847 GACCCACACCAAGCTGCC 60.986 66.667 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.301401 GCCGTGGCAGTACTTGTCA 60.301 57.895 5.89 0.00 39.60 3.58
40 41 1.203174 TCCTGGGAGATGTGTGTCTGA 60.203 52.381 0.00 0.00 0.00 3.27
103 104 1.963338 GAACGCACTCTGCTTGCCT 60.963 57.895 0.00 0.00 42.25 4.75
104 105 2.558313 GAACGCACTCTGCTTGCC 59.442 61.111 0.00 0.00 42.25 4.52
105 106 2.171940 CGAACGCACTCTGCTTGC 59.828 61.111 0.00 0.00 42.25 4.01
106 107 2.171940 GCGAACGCACTCTGCTTG 59.828 61.111 14.26 0.00 42.25 4.01
107 108 3.044305 GGCGAACGCACTCTGCTT 61.044 61.111 20.16 0.00 42.25 3.91
114 115 1.059838 GTATTTCCGGCGAACGCAC 59.940 57.895 20.16 9.12 44.11 5.34
115 116 2.446253 CGTATTTCCGGCGAACGCA 61.446 57.895 20.16 0.12 44.11 5.24
117 118 0.228742 CATCGTATTTCCGGCGAACG 59.771 55.000 9.30 10.24 43.80 3.95
125 126 1.006391 CGCACGTGACATCGTATTTCC 60.006 52.381 22.23 0.00 42.27 3.13
126 127 1.589022 GCGCACGTGACATCGTATTTC 60.589 52.381 22.23 0.00 42.27 2.17
127 128 0.368907 GCGCACGTGACATCGTATTT 59.631 50.000 22.23 0.00 42.27 1.40
130 131 1.799916 CAGCGCACGTGACATCGTA 60.800 57.895 22.23 0.00 42.27 3.43
134 135 3.043713 CACCAGCGCACGTGACAT 61.044 61.111 22.23 0.00 31.36 3.06
139 140 2.403378 AACAAACACCAGCGCACGT 61.403 52.632 11.47 0.74 0.00 4.49
141 142 2.230264 GCAACAAACACCAGCGCAC 61.230 57.895 11.47 0.00 0.00 5.34
148 149 1.536709 CCTTCTGCTGCAACAAACACC 60.537 52.381 3.02 0.00 0.00 4.16
154 155 1.529010 CCACCCTTCTGCTGCAACA 60.529 57.895 3.02 0.00 0.00 3.33
157 158 1.374947 GTACCACCCTTCTGCTGCA 59.625 57.895 0.88 0.88 0.00 4.41
162 163 2.764572 AGGTTATCGTACCACCCTTCTG 59.235 50.000 0.00 0.00 40.82 3.02
163 164 2.764572 CAGGTTATCGTACCACCCTTCT 59.235 50.000 0.00 0.00 40.82 2.85
166 167 1.492764 CCAGGTTATCGTACCACCCT 58.507 55.000 0.00 0.00 40.82 4.34
174 175 1.134788 CGGAGAAAGCCAGGTTATCGT 60.135 52.381 0.00 0.00 0.00 3.73
179 180 2.034221 GCCGGAGAAAGCCAGGTT 59.966 61.111 5.05 0.00 0.00 3.50
181 182 4.394712 ACGCCGGAGAAAGCCAGG 62.395 66.667 13.83 0.00 0.00 4.45
186 187 3.121030 CCAGCACGCCGGAGAAAG 61.121 66.667 13.83 2.20 0.00 2.62
196 197 4.169696 TTATCGGGGCCCAGCACG 62.170 66.667 26.86 18.46 29.41 5.34
197 198 2.203209 CTTATCGGGGCCCAGCAC 60.203 66.667 26.86 4.59 0.00 4.40
202 203 2.518587 GGTTGCTTATCGGGGCCC 60.519 66.667 15.76 15.76 0.00 5.80
209 210 3.625764 TGTTGCTTATCGGGTTGCTTATC 59.374 43.478 0.00 0.00 0.00 1.75
217 218 1.676014 GCTGACTGTTGCTTATCGGGT 60.676 52.381 0.00 0.00 0.00 5.28
220 221 1.662629 CTGGCTGACTGTTGCTTATCG 59.337 52.381 6.67 0.00 0.00 2.92
221 222 2.935201 CTCTGGCTGACTGTTGCTTATC 59.065 50.000 6.67 0.00 0.00 1.75
222 223 2.938756 GCTCTGGCTGACTGTTGCTTAT 60.939 50.000 6.67 0.00 35.22 1.73
223 224 1.609061 GCTCTGGCTGACTGTTGCTTA 60.609 52.381 6.67 0.00 35.22 3.09
224 225 0.888285 GCTCTGGCTGACTGTTGCTT 60.888 55.000 6.67 0.00 35.22 3.91
225 226 1.302351 GCTCTGGCTGACTGTTGCT 60.302 57.895 6.67 0.00 35.22 3.91
226 227 2.331132 GGCTCTGGCTGACTGTTGC 61.331 63.158 0.00 0.00 38.73 4.17
227 228 3.978272 GGCTCTGGCTGACTGTTG 58.022 61.111 0.00 0.00 38.73 3.33
277 278 9.262358 GTACAGTTGGGTTTATCAGATAAGATC 57.738 37.037 3.05 0.00 0.00 2.75
336 340 1.228367 CTGTTCCCCTGCTTGCAGT 60.228 57.895 19.49 0.00 0.00 4.40
373 377 2.202570 CCGTCGTAGCCAACCTCG 60.203 66.667 0.00 0.00 0.00 4.63
378 382 2.357760 GGTTGCCGTCGTAGCCAA 60.358 61.111 0.00 0.00 0.00 4.52
386 390 2.582978 GGAGTAGGGGTTGCCGTC 59.417 66.667 0.00 0.00 0.00 4.79
401 405 3.822192 CTGGCCATCGTCGTCGGA 61.822 66.667 5.51 0.00 37.69 4.55
405 409 2.764128 ATCCCTGGCCATCGTCGT 60.764 61.111 5.51 0.00 0.00 4.34
407 411 2.592861 GCATCCCTGGCCATCGTC 60.593 66.667 5.51 0.00 0.00 4.20
411 415 1.382146 CCTTTGCATCCCTGGCCAT 60.382 57.895 5.51 0.00 0.00 4.40
453 457 8.576442 CCTTTGCGGGATGTAATAAAATCTTAT 58.424 33.333 0.00 0.00 0.00 1.73
454 458 7.558444 ACCTTTGCGGGATGTAATAAAATCTTA 59.442 33.333 0.00 0.00 36.97 2.10
455 459 6.379988 ACCTTTGCGGGATGTAATAAAATCTT 59.620 34.615 0.00 0.00 36.97 2.40
456 460 5.891551 ACCTTTGCGGGATGTAATAAAATCT 59.108 36.000 0.00 0.00 36.97 2.40
457 461 6.144078 ACCTTTGCGGGATGTAATAAAATC 57.856 37.500 0.00 0.00 36.97 2.17
458 462 6.538945 AACCTTTGCGGGATGTAATAAAAT 57.461 33.333 0.00 0.00 36.97 1.82
459 463 5.986501 AACCTTTGCGGGATGTAATAAAA 57.013 34.783 0.00 0.00 36.97 1.52
460 464 5.066764 GCTAACCTTTGCGGGATGTAATAAA 59.933 40.000 0.00 0.00 36.97 1.40
461 465 4.577283 GCTAACCTTTGCGGGATGTAATAA 59.423 41.667 0.00 0.00 36.97 1.40
462 466 4.131596 GCTAACCTTTGCGGGATGTAATA 58.868 43.478 0.00 0.00 36.97 0.98
463 467 2.949644 GCTAACCTTTGCGGGATGTAAT 59.050 45.455 0.00 0.00 36.97 1.89
464 468 2.290387 TGCTAACCTTTGCGGGATGTAA 60.290 45.455 0.00 0.00 36.97 2.41
465 469 1.279558 TGCTAACCTTTGCGGGATGTA 59.720 47.619 0.00 0.00 36.97 2.29
466 470 0.037590 TGCTAACCTTTGCGGGATGT 59.962 50.000 0.00 0.00 36.97 3.06
467 471 0.451783 GTGCTAACCTTTGCGGGATG 59.548 55.000 0.00 0.00 36.97 3.51
468 472 0.037590 TGTGCTAACCTTTGCGGGAT 59.962 50.000 0.00 0.00 36.97 3.85
469 473 0.037590 ATGTGCTAACCTTTGCGGGA 59.962 50.000 0.00 0.00 36.97 5.14
470 474 1.400494 GTATGTGCTAACCTTTGCGGG 59.600 52.381 0.00 0.00 36.97 6.13
471 475 2.356135 AGTATGTGCTAACCTTTGCGG 58.644 47.619 0.00 0.00 39.35 5.69
472 476 3.181510 GGAAGTATGTGCTAACCTTTGCG 60.182 47.826 0.00 0.00 0.00 4.85
473 477 4.010349 AGGAAGTATGTGCTAACCTTTGC 58.990 43.478 0.00 0.00 0.00 3.68
474 478 5.352569 CAGAGGAAGTATGTGCTAACCTTTG 59.647 44.000 0.00 0.00 0.00 2.77
475 479 5.013183 ACAGAGGAAGTATGTGCTAACCTTT 59.987 40.000 0.00 0.00 0.00 3.11
476 480 4.532521 ACAGAGGAAGTATGTGCTAACCTT 59.467 41.667 0.00 0.00 0.00 3.50
477 481 4.097418 ACAGAGGAAGTATGTGCTAACCT 58.903 43.478 0.00 0.00 0.00 3.50
478 482 4.434520 GACAGAGGAAGTATGTGCTAACC 58.565 47.826 0.00 0.00 27.90 2.85
479 483 4.106197 CGACAGAGGAAGTATGTGCTAAC 58.894 47.826 0.00 0.00 27.90 2.34
480 484 3.428999 GCGACAGAGGAAGTATGTGCTAA 60.429 47.826 0.00 0.00 27.90 3.09
481 485 2.099263 GCGACAGAGGAAGTATGTGCTA 59.901 50.000 0.00 0.00 27.90 3.49
482 486 1.134965 GCGACAGAGGAAGTATGTGCT 60.135 52.381 0.00 0.00 27.90 4.40
483 487 1.281899 GCGACAGAGGAAGTATGTGC 58.718 55.000 0.00 0.00 27.90 4.57
484 488 2.654749 TGCGACAGAGGAAGTATGTG 57.345 50.000 0.00 0.00 27.90 3.21
485 489 5.537300 ATTATGCGACAGAGGAAGTATGT 57.463 39.130 0.00 0.00 31.51 2.29
486 490 9.809096 ATTATATTATGCGACAGAGGAAGTATG 57.191 33.333 0.00 0.00 0.00 2.39
518 522 9.985730 CCCATATAACATAAGATTTTGTTGCAT 57.014 29.630 10.46 2.17 36.75 3.96
519 523 9.194972 TCCCATATAACATAAGATTTTGTTGCA 57.805 29.630 10.46 0.00 36.75 4.08
520 524 9.463443 GTCCCATATAACATAAGATTTTGTTGC 57.537 33.333 10.46 0.00 36.75 4.17
521 525 9.663904 CGTCCCATATAACATAAGATTTTGTTG 57.336 33.333 10.46 0.00 36.75 3.33
522 526 8.846211 CCGTCCCATATAACATAAGATTTTGTT 58.154 33.333 6.63 6.63 39.32 2.83
523 527 8.215050 TCCGTCCCATATAACATAAGATTTTGT 58.785 33.333 0.00 0.00 0.00 2.83
524 528 8.615878 TCCGTCCCATATAACATAAGATTTTG 57.384 34.615 0.00 0.00 0.00 2.44
525 529 9.284968 CTTCCGTCCCATATAACATAAGATTTT 57.715 33.333 0.00 0.00 0.00 1.82
526 530 7.883311 CCTTCCGTCCCATATAACATAAGATTT 59.117 37.037 0.00 0.00 0.00 2.17
527 531 7.236847 TCCTTCCGTCCCATATAACATAAGATT 59.763 37.037 0.00 0.00 0.00 2.40
528 532 6.729100 TCCTTCCGTCCCATATAACATAAGAT 59.271 38.462 0.00 0.00 0.00 2.40
529 533 6.079336 TCCTTCCGTCCCATATAACATAAGA 58.921 40.000 0.00 0.00 0.00 2.10
530 534 6.354794 TCCTTCCGTCCCATATAACATAAG 57.645 41.667 0.00 0.00 0.00 1.73
531 535 5.279809 GCTCCTTCCGTCCCATATAACATAA 60.280 44.000 0.00 0.00 0.00 1.90
532 536 4.222145 GCTCCTTCCGTCCCATATAACATA 59.778 45.833 0.00 0.00 0.00 2.29
533 537 3.008049 GCTCCTTCCGTCCCATATAACAT 59.992 47.826 0.00 0.00 0.00 2.71
534 538 2.367567 GCTCCTTCCGTCCCATATAACA 59.632 50.000 0.00 0.00 0.00 2.41
535 539 2.367567 TGCTCCTTCCGTCCCATATAAC 59.632 50.000 0.00 0.00 0.00 1.89
536 540 2.684943 TGCTCCTTCCGTCCCATATAA 58.315 47.619 0.00 0.00 0.00 0.98
537 541 2.391926 TGCTCCTTCCGTCCCATATA 57.608 50.000 0.00 0.00 0.00 0.86
538 542 1.734655 ATGCTCCTTCCGTCCCATAT 58.265 50.000 0.00 0.00 0.00 1.78
539 543 2.391926 TATGCTCCTTCCGTCCCATA 57.608 50.000 0.00 0.00 0.00 2.74
540 544 1.734655 ATATGCTCCTTCCGTCCCAT 58.265 50.000 0.00 0.00 0.00 4.00
541 545 2.391926 TATATGCTCCTTCCGTCCCA 57.608 50.000 0.00 0.00 0.00 4.37
542 546 4.202264 CCATATATATGCTCCTTCCGTCCC 60.202 50.000 16.08 0.00 32.40 4.46
543 547 4.740934 GCCATATATATGCTCCTTCCGTCC 60.741 50.000 16.08 0.00 32.40 4.79
544 548 4.100189 AGCCATATATATGCTCCTTCCGTC 59.900 45.833 16.08 0.00 32.40 4.79
545 549 4.033709 AGCCATATATATGCTCCTTCCGT 58.966 43.478 16.08 0.00 32.40 4.69
546 550 4.679373 AGCCATATATATGCTCCTTCCG 57.321 45.455 16.08 2.79 32.40 4.30
547 551 5.306678 AGCTAGCCATATATATGCTCCTTCC 59.693 44.000 16.08 7.19 32.40 3.46
548 552 6.418057 AGCTAGCCATATATATGCTCCTTC 57.582 41.667 16.08 4.66 32.40 3.46
549 553 6.385176 TCAAGCTAGCCATATATATGCTCCTT 59.615 38.462 16.08 16.35 32.40 3.36
550 554 5.901853 TCAAGCTAGCCATATATATGCTCCT 59.098 40.000 16.08 13.21 32.40 3.69
551 555 6.166984 TCAAGCTAGCCATATATATGCTCC 57.833 41.667 16.08 11.20 32.40 4.70
552 556 8.674263 AAATCAAGCTAGCCATATATATGCTC 57.326 34.615 16.08 10.22 32.40 4.26
604 608 6.803366 ATGGATGCATGCATACTAGAGATA 57.197 37.500 36.41 19.60 37.06 1.98
605 609 5.695424 ATGGATGCATGCATACTAGAGAT 57.305 39.130 36.41 22.13 37.06 2.75
613 617 3.683564 GCTAGGCTATGGATGCATGCATA 60.684 47.826 31.28 31.28 39.62 3.14
625 629 8.833231 TTTACTTAATTGCTAGCTAGGCTATG 57.167 34.615 22.10 7.92 40.54 2.23
668 672 5.491982 GAGCTGGAGAAAAACAAGATAGGA 58.508 41.667 0.00 0.00 0.00 2.94
669 673 4.637977 GGAGCTGGAGAAAAACAAGATAGG 59.362 45.833 0.00 0.00 0.00 2.57
670 674 4.331168 CGGAGCTGGAGAAAAACAAGATAG 59.669 45.833 0.00 0.00 0.00 2.08
677 681 1.740025 CATCCGGAGCTGGAGAAAAAC 59.260 52.381 11.34 0.00 42.45 2.43
680 684 1.221840 GCATCCGGAGCTGGAGAAA 59.778 57.895 11.34 0.00 42.45 2.52
708 712 5.046950 GGACTCACCTATAATCATGGACCTC 60.047 48.000 0.00 0.00 35.41 3.85
710 714 4.593206 TGGACTCACCTATAATCATGGACC 59.407 45.833 0.00 0.00 39.86 4.46
736 740 4.322424 CCCCACCAAAATAAGTAAACCTGC 60.322 45.833 0.00 0.00 0.00 4.85
744 748 3.862309 AGGTATCCCCCACCAAAATAAGT 59.138 43.478 0.00 0.00 38.62 2.24
777 781 9.342308 TGTGTTGATAGTTCTCTTCTGAAAAAT 57.658 29.630 0.00 0.00 0.00 1.82
790 796 9.708222 GATTATGTCATTGTGTGTTGATAGTTC 57.292 33.333 0.00 0.00 0.00 3.01
793 799 9.926751 GAAGATTATGTCATTGTGTGTTGATAG 57.073 33.333 0.00 0.00 0.00 2.08
816 822 8.180267 GGACTGAATCAACATAGAAATGTGAAG 58.820 37.037 0.00 0.00 45.79 3.02
824 830 8.786826 AAATAACGGACTGAATCAACATAGAA 57.213 30.769 0.00 0.00 0.00 2.10
826 832 8.425577 AGAAATAACGGACTGAATCAACATAG 57.574 34.615 0.00 0.00 0.00 2.23
828 834 7.687941 AAGAAATAACGGACTGAATCAACAT 57.312 32.000 0.00 0.00 0.00 2.71
838 844 4.219288 ACGTCCACTAAGAAATAACGGACT 59.781 41.667 0.00 0.00 39.42 3.85
841 847 4.487948 TCACGTCCACTAAGAAATAACGG 58.512 43.478 0.00 0.00 33.26 4.44
842 848 5.159209 ACTCACGTCCACTAAGAAATAACG 58.841 41.667 0.00 0.00 35.00 3.18
846 852 5.944599 TCTAGACTCACGTCCACTAAGAAAT 59.055 40.000 0.00 0.00 41.16 2.17
857 863 9.176181 GATCTCAAAATAATCTAGACTCACGTC 57.824 37.037 0.00 0.00 40.54 4.34
869 875 6.073548 ACGCTTCATCGGATCTCAAAATAATC 60.074 38.462 0.00 0.00 0.00 1.75
874 880 2.972625 ACGCTTCATCGGATCTCAAAA 58.027 42.857 0.00 0.00 0.00 2.44
882 888 5.447624 TGAATAGAATACGCTTCATCGGA 57.552 39.130 1.70 0.00 0.00 4.55
888 894 8.131455 TGTCTGAATTGAATAGAATACGCTTC 57.869 34.615 0.00 0.00 0.00 3.86
892 898 8.864069 ACTCTGTCTGAATTGAATAGAATACG 57.136 34.615 0.00 0.00 0.00 3.06
907 913 8.367911 ACAATAAATGACTTGTACTCTGTCTGA 58.632 33.333 12.19 0.00 33.96 3.27
933 939 8.664211 TGTGTGTGTTTGTGTCTATACATAAA 57.336 30.769 0.00 0.00 42.33 1.40
935 941 8.840833 ATTGTGTGTGTTTGTGTCTATACATA 57.159 30.769 0.00 0.00 38.08 2.29
942 948 4.574828 GGAGTATTGTGTGTGTTTGTGTCT 59.425 41.667 0.00 0.00 0.00 3.41
943 949 4.334203 TGGAGTATTGTGTGTGTTTGTGTC 59.666 41.667 0.00 0.00 0.00 3.67
949 1003 2.224769 CCCCTGGAGTATTGTGTGTGTT 60.225 50.000 0.00 0.00 0.00 3.32
962 1016 2.041922 TCATCCGGTCCCCTGGAG 60.042 66.667 0.00 0.00 37.76 3.86
963 1017 2.365105 GTCATCCGGTCCCCTGGA 60.365 66.667 0.00 0.00 38.95 3.86
966 1020 2.687566 GTGGTCATCCGGTCCCCT 60.688 66.667 0.00 0.00 36.30 4.79
970 1024 1.382522 TAGTACGTGGTCATCCGGTC 58.617 55.000 0.00 0.00 36.30 4.79
972 1026 1.532505 CGTTAGTACGTGGTCATCCGG 60.533 57.143 0.00 0.00 42.72 5.14
973 1027 1.818850 CGTTAGTACGTGGTCATCCG 58.181 55.000 0.00 0.00 42.72 4.18
984 1038 4.033817 AGAGACATAGACACGCGTTAGTAC 59.966 45.833 10.22 0.00 0.00 2.73
992 1046 6.310467 TGAAAAATACAGAGACATAGACACGC 59.690 38.462 0.00 0.00 0.00 5.34
993 1047 7.542477 ACTGAAAAATACAGAGACATAGACACG 59.458 37.037 0.00 0.00 38.55 4.49
1000 1054 6.874134 ACGCTAACTGAAAAATACAGAGACAT 59.126 34.615 0.00 0.00 38.55 3.06
1006 1060 6.236017 TCCAACGCTAACTGAAAAATACAG 57.764 37.500 0.00 0.00 40.68 2.74
1110 1165 4.180057 ACTTTCGCTTTGAAATTTGTGCA 58.820 34.783 0.00 0.00 45.21 4.57
1149 1204 1.696063 ATTGTTGCAACAGCTGTCCT 58.304 45.000 29.50 1.60 40.50 3.85
1182 1237 4.139786 TCATCCTTTCAGCAATATCAGCC 58.860 43.478 0.00 0.00 0.00 4.85
1222 1277 6.267471 TCAAAATTGTTGGTTGCCTTCTCTAT 59.733 34.615 0.00 0.00 0.00 1.98
1374 1429 5.690997 TCTGTGATAGTATAGCAACCTCG 57.309 43.478 0.00 0.00 39.49 4.63
1425 1480 1.403679 TCTGTTTCAAGGCAACAACCG 59.596 47.619 0.00 0.00 33.74 4.44
1507 1562 4.647853 CCATGACAATGATCTTGGTCCATT 59.352 41.667 12.38 0.00 38.51 3.16
1638 1693 3.664107 TGCTGTTAGAGTGTCATCCAAC 58.336 45.455 0.00 0.00 0.00 3.77
1701 1756 3.319689 CCATTGTTGTTAACCCCGACTTT 59.680 43.478 2.48 0.00 0.00 2.66
1704 1759 2.232399 ACCATTGTTGTTAACCCCGAC 58.768 47.619 2.48 0.00 0.00 4.79
1752 1807 3.541632 CCGCCCTGTGTAGAAATACATT 58.458 45.455 0.00 0.00 32.03 2.71
1827 1882 5.957842 ATGAAAATGGCTTTTGTCGAGTA 57.042 34.783 0.00 0.00 34.73 2.59
1836 1891 8.587608 TCAGAAGACAAATATGAAAATGGCTTT 58.412 29.630 0.00 0.00 41.10 3.51
1852 1908 2.487265 GGCCTTCACCTTCAGAAGACAA 60.487 50.000 12.14 0.61 44.00 3.18
1879 1937 5.064962 CCTCAAACAATGCAACAAAATGTGT 59.935 36.000 0.00 0.00 44.64 3.72
1986 2044 8.157476 TCCTCTCCTCTTAATTTTATACATGCC 58.843 37.037 0.00 0.00 0.00 4.40
2013 2074 1.926511 CTTGCCTCATGGTTGGACGC 61.927 60.000 0.00 0.00 35.27 5.19
2099 2163 3.001330 CGTGACACCTTTGTTCTCAAGTC 59.999 47.826 0.00 0.00 35.47 3.01
2104 2168 5.917541 TTAATCGTGACACCTTTGTTCTC 57.082 39.130 0.00 0.00 35.47 2.87
2111 2175 3.270877 GGAGCATTAATCGTGACACCTT 58.729 45.455 0.00 0.00 0.00 3.50
2112 2176 2.236146 TGGAGCATTAATCGTGACACCT 59.764 45.455 0.00 0.00 0.00 4.00
2115 2179 4.135747 TGATGGAGCATTAATCGTGACA 57.864 40.909 0.00 0.00 0.00 3.58
2119 2183 2.872245 CGGTTGATGGAGCATTAATCGT 59.128 45.455 0.00 0.00 38.52 3.73
2121 2185 5.297547 TCTACGGTTGATGGAGCATTAATC 58.702 41.667 0.00 0.00 0.00 1.75
2124 2188 4.631131 CATCTACGGTTGATGGAGCATTA 58.369 43.478 20.27 0.00 38.04 1.90
2140 2204 4.125703 CCATCAGTGCTTCTTCCATCTAC 58.874 47.826 0.00 0.00 0.00 2.59
2148 2212 2.499289 AGTCGATCCATCAGTGCTTCTT 59.501 45.455 0.00 0.00 0.00 2.52
2156 2220 6.016693 ACTGTATTGTCTAGTCGATCCATCAG 60.017 42.308 0.00 0.00 0.00 2.90
2160 2224 6.206829 CCATACTGTATTGTCTAGTCGATCCA 59.793 42.308 0.00 0.00 0.00 3.41
2164 2228 7.052248 TCTTCCATACTGTATTGTCTAGTCGA 58.948 38.462 0.00 0.00 0.00 4.20
2175 2239 4.202305 GCCAGCTCTTCTTCCATACTGTAT 60.202 45.833 0.00 0.00 0.00 2.29
2194 2258 0.824109 TACCTCGAAGACATGGCCAG 59.176 55.000 13.05 6.08 0.00 4.85
2208 2272 6.486320 GTCAACAGTACTACCTAGGATACCTC 59.514 46.154 17.98 1.26 34.61 3.85
2209 2273 6.069206 TGTCAACAGTACTACCTAGGATACCT 60.069 42.308 17.98 1.25 37.71 3.08
2211 2275 6.600822 TGTGTCAACAGTACTACCTAGGATAC 59.399 42.308 17.98 14.21 0.00 2.24
2212 2276 6.724351 TGTGTCAACAGTACTACCTAGGATA 58.276 40.000 17.98 3.30 0.00 2.59
2218 2282 4.833380 ACTCATGTGTCAACAGTACTACCT 59.167 41.667 0.00 0.00 40.39 3.08
2222 2286 5.276461 TGAACTCATGTGTCAACAGTACT 57.724 39.130 0.03 0.00 40.39 2.73
2228 2292 8.311650 ACTATAAGTTGAACTCATGTGTCAAC 57.688 34.615 22.06 22.06 40.43 3.18
2246 2310 8.080363 AGTCCCCTACTGAAAAAGACTATAAG 57.920 38.462 0.00 0.00 36.93 1.73
2253 2317 5.944007 GCAATAAGTCCCCTACTGAAAAAGA 59.056 40.000 0.00 0.00 38.88 2.52
2259 2323 2.840511 TGGCAATAAGTCCCCTACTGA 58.159 47.619 0.00 0.00 38.88 3.41
2268 2332 6.480320 AGTCAGTAATCGAATGGCAATAAGTC 59.520 38.462 0.00 0.00 0.00 3.01
2269 2333 6.349300 AGTCAGTAATCGAATGGCAATAAGT 58.651 36.000 0.00 0.00 0.00 2.24
2275 2339 5.592104 TTAGAGTCAGTAATCGAATGGCA 57.408 39.130 0.00 0.00 0.00 4.92
2277 2341 6.258068 GGGTTTTAGAGTCAGTAATCGAATGG 59.742 42.308 0.00 0.00 0.00 3.16
2282 2346 6.395629 TCAAGGGTTTTAGAGTCAGTAATCG 58.604 40.000 0.00 0.00 0.00 3.34
2283 2347 8.794335 AATCAAGGGTTTTAGAGTCAGTAATC 57.206 34.615 0.00 0.00 0.00 1.75
2288 2352 7.445402 TGAGAAAATCAAGGGTTTTAGAGTCAG 59.555 37.037 0.00 0.00 34.02 3.51
2292 2356 8.572855 AGATGAGAAAATCAAGGGTTTTAGAG 57.427 34.615 0.00 0.00 42.53 2.43
2299 2363 6.310149 AGTTCAAGATGAGAAAATCAAGGGT 58.690 36.000 0.00 0.00 42.53 4.34
2302 2366 9.525409 AACAAAGTTCAAGATGAGAAAATCAAG 57.475 29.630 0.00 0.00 42.53 3.02
2304 2368 9.520204 GAAACAAAGTTCAAGATGAGAAAATCA 57.480 29.630 0.00 0.00 43.70 2.57
2305 2369 9.741647 AGAAACAAAGTTCAAGATGAGAAAATC 57.258 29.630 0.00 0.00 0.00 2.17
2309 2373 7.970061 CACAAGAAACAAAGTTCAAGATGAGAA 59.030 33.333 0.00 0.00 0.00 2.87
2312 2376 7.156876 ACACAAGAAACAAAGTTCAAGATGA 57.843 32.000 0.00 0.00 0.00 2.92
2313 2377 7.201461 CCAACACAAGAAACAAAGTTCAAGATG 60.201 37.037 0.00 0.00 0.00 2.90
2314 2378 6.813152 CCAACACAAGAAACAAAGTTCAAGAT 59.187 34.615 0.00 0.00 0.00 2.40
2315 2379 6.155827 CCAACACAAGAAACAAAGTTCAAGA 58.844 36.000 0.00 0.00 0.00 3.02
2316 2380 5.925969 ACCAACACAAGAAACAAAGTTCAAG 59.074 36.000 0.00 0.00 0.00 3.02
2317 2381 5.694006 CACCAACACAAGAAACAAAGTTCAA 59.306 36.000 0.00 0.00 0.00 2.69
2318 2382 5.221342 ACACCAACACAAGAAACAAAGTTCA 60.221 36.000 0.00 0.00 0.00 3.18
2319 2383 5.118510 CACACCAACACAAGAAACAAAGTTC 59.881 40.000 0.00 0.00 0.00 3.01
2320 2384 4.987912 CACACCAACACAAGAAACAAAGTT 59.012 37.500 0.00 0.00 0.00 2.66
2321 2385 4.555262 CACACCAACACAAGAAACAAAGT 58.445 39.130 0.00 0.00 0.00 2.66
2322 2386 3.367630 GCACACCAACACAAGAAACAAAG 59.632 43.478 0.00 0.00 0.00 2.77
2323 2387 3.006323 AGCACACCAACACAAGAAACAAA 59.994 39.130 0.00 0.00 0.00 2.83
2324 2388 2.560542 AGCACACCAACACAAGAAACAA 59.439 40.909 0.00 0.00 0.00 2.83
2325 2389 2.166829 AGCACACCAACACAAGAAACA 58.833 42.857 0.00 0.00 0.00 2.83
2326 2390 2.939460 AGCACACCAACACAAGAAAC 57.061 45.000 0.00 0.00 0.00 2.78
2327 2391 4.265893 TCTAAGCACACCAACACAAGAAA 58.734 39.130 0.00 0.00 0.00 2.52
2419 2484 7.792374 ATGTTCGTGCTTGTATCATCTTAAT 57.208 32.000 0.00 0.00 0.00 1.40
2445 2510 3.468770 CATCTTCTCTGAGAATGGCTGG 58.531 50.000 19.61 7.96 33.13 4.85
2447 2512 2.158784 GGCATCTTCTCTGAGAATGGCT 60.159 50.000 27.10 10.88 33.13 4.75
2448 2513 2.220313 GGCATCTTCTCTGAGAATGGC 58.780 52.381 23.21 23.21 33.13 4.40
2450 2515 4.704965 TCATGGCATCTTCTCTGAGAATG 58.295 43.478 19.61 16.45 33.13 2.67
2453 2518 4.028825 TCTTCATGGCATCTTCTCTGAGA 58.971 43.478 2.58 2.58 0.00 3.27
2454 2519 4.403585 TCTTCATGGCATCTTCTCTGAG 57.596 45.455 0.00 0.00 0.00 3.35
2456 2521 5.123936 TCATTCTTCATGGCATCTTCTCTG 58.876 41.667 0.00 0.00 33.07 3.35
2457 2522 5.130643 TCTCATTCTTCATGGCATCTTCTCT 59.869 40.000 0.00 0.00 33.07 3.10
2458 2523 5.236911 GTCTCATTCTTCATGGCATCTTCTC 59.763 44.000 0.00 0.00 33.07 2.87
2459 2524 5.124645 GTCTCATTCTTCATGGCATCTTCT 58.875 41.667 0.00 0.00 33.07 2.85
2461 2526 3.875727 CGTCTCATTCTTCATGGCATCTT 59.124 43.478 0.00 0.00 33.07 2.40
2463 2528 2.032204 GCGTCTCATTCTTCATGGCATC 60.032 50.000 0.00 0.00 33.07 3.91
2465 2530 1.372582 GCGTCTCATTCTTCATGGCA 58.627 50.000 0.00 0.00 33.07 4.92
2466 2531 0.302890 CGCGTCTCATTCTTCATGGC 59.697 55.000 0.00 0.00 33.07 4.40
2467 2532 0.933097 CCGCGTCTCATTCTTCATGG 59.067 55.000 4.92 0.00 33.07 3.66
2468 2533 0.302890 GCCGCGTCTCATTCTTCATG 59.697 55.000 4.92 0.00 0.00 3.07
2482 2550 2.098298 CATTGGAAAGACGCCGCG 59.902 61.111 12.14 12.14 0.00 6.46
2485 2553 1.508088 CTGGCATTGGAAAGACGCC 59.492 57.895 0.00 0.00 39.32 5.68
2487 2555 0.883833 AAGCTGGCATTGGAAAGACG 59.116 50.000 0.00 0.00 0.00 4.18
2498 2566 2.042259 CGGCTCAATGAAGCTGGCA 61.042 57.895 0.00 0.00 43.59 4.92
2509 2577 1.955495 TTCTGCGGCTATCGGCTCAA 61.955 55.000 0.00 0.00 41.46 3.02
2510 2578 1.748329 ATTCTGCGGCTATCGGCTCA 61.748 55.000 0.00 0.00 41.46 4.26
2514 2582 0.389166 GGAGATTCTGCGGCTATCGG 60.389 60.000 0.00 0.00 39.69 4.18
2523 2591 2.808543 ACTGTTGAAACGGAGATTCTGC 59.191 45.455 8.97 0.00 40.12 4.26
2541 2609 6.090088 GCGCTCTCCTTCATATTATACAACTG 59.910 42.308 0.00 0.00 0.00 3.16
2546 2614 7.118390 ACATTTGCGCTCTCCTTCATATTATAC 59.882 37.037 9.73 0.00 0.00 1.47
2547 2615 7.118245 CACATTTGCGCTCTCCTTCATATTATA 59.882 37.037 9.73 0.00 0.00 0.98
2553 2622 1.741706 CACATTTGCGCTCTCCTTCAT 59.258 47.619 9.73 0.00 0.00 2.57
2589 2658 4.097135 TCGAGCACAATGAAACTGGAAAAA 59.903 37.500 0.00 0.00 0.00 1.94
2590 2659 3.629855 TCGAGCACAATGAAACTGGAAAA 59.370 39.130 0.00 0.00 0.00 2.29
2591 2660 3.210227 TCGAGCACAATGAAACTGGAAA 58.790 40.909 0.00 0.00 0.00 3.13
2592 2661 2.844946 TCGAGCACAATGAAACTGGAA 58.155 42.857 0.00 0.00 0.00 3.53
2593 2662 2.542020 TCGAGCACAATGAAACTGGA 57.458 45.000 0.00 0.00 0.00 3.86
2594 2663 2.549754 ACTTCGAGCACAATGAAACTGG 59.450 45.455 0.00 0.00 0.00 4.00
2602 2671 2.484264 GGCTTACAACTTCGAGCACAAT 59.516 45.455 0.00 0.00 36.87 2.71
2610 2679 2.194271 GGATCGAGGCTTACAACTTCG 58.806 52.381 0.00 0.00 0.00 3.79
2611 2680 3.247006 TGGATCGAGGCTTACAACTTC 57.753 47.619 0.00 0.00 0.00 3.01
2615 2684 2.766263 AGTGATGGATCGAGGCTTACAA 59.234 45.455 0.00 0.00 0.00 2.41
2619 2688 3.197766 TGTTTAGTGATGGATCGAGGCTT 59.802 43.478 0.00 0.00 0.00 4.35
2622 2691 3.126831 GCTGTTTAGTGATGGATCGAGG 58.873 50.000 0.00 0.00 0.00 4.63
2623 2692 3.785486 TGCTGTTTAGTGATGGATCGAG 58.215 45.455 0.00 0.00 0.00 4.04
2626 2695 4.371786 TCGATGCTGTTTAGTGATGGATC 58.628 43.478 0.00 0.00 0.00 3.36
2634 2703 2.027192 ACCACCATCGATGCTGTTTAGT 60.027 45.455 20.25 7.60 0.00 2.24
2636 2705 2.290008 ACACCACCATCGATGCTGTTTA 60.290 45.455 20.25 0.00 0.00 2.01
2643 2712 4.000325 TGACTAAAACACCACCATCGATG 59.000 43.478 18.76 18.76 0.00 3.84
2647 2716 4.522789 ACCAATGACTAAAACACCACCATC 59.477 41.667 0.00 0.00 0.00 3.51
2654 2723 5.063880 AGAGGTGACCAATGACTAAAACAC 58.936 41.667 3.63 0.00 0.00 3.32
2658 2727 8.934023 ATTAAAAGAGGTGACCAATGACTAAA 57.066 30.769 3.63 0.00 0.00 1.85
2661 2730 5.946377 GGATTAAAAGAGGTGACCAATGACT 59.054 40.000 3.63 0.00 0.00 3.41
2672 2741 6.842676 AGAACAGAGTTGGATTAAAAGAGGT 58.157 36.000 0.00 0.00 0.00 3.85
2673 2742 6.936900 TGAGAACAGAGTTGGATTAAAAGAGG 59.063 38.462 0.00 0.00 0.00 3.69
2694 2763 0.391661 GCTTCCAACCGCATCTGAGA 60.392 55.000 0.00 0.00 0.00 3.27
2697 2766 0.099968 CATGCTTCCAACCGCATCTG 59.900 55.000 0.00 0.00 44.44 2.90
2700 2769 0.611618 TTCCATGCTTCCAACCGCAT 60.612 50.000 0.00 0.00 46.98 4.73
2730 2799 4.141482 ACAGCTACATATTTGACGGGGAAT 60.141 41.667 0.00 0.00 0.00 3.01
2763 2832 1.354506 GTCGCTGATCCAAGCATGC 59.645 57.895 10.51 10.51 43.73 4.06
2765 2834 0.807667 GACGTCGCTGATCCAAGCAT 60.808 55.000 0.00 0.00 43.73 3.79
2767 2836 0.737715 AAGACGTCGCTGATCCAAGC 60.738 55.000 10.46 0.00 39.94 4.01
2777 2846 0.985549 CAGTTAGCTGAAGACGTCGC 59.014 55.000 10.46 7.51 45.28 5.19
2798 2867 3.622206 GCAGATTACATGGTGGTTGAGGA 60.622 47.826 0.00 0.00 0.00 3.71
2799 2868 2.684881 GCAGATTACATGGTGGTTGAGG 59.315 50.000 0.00 0.00 0.00 3.86
2818 2887 3.998913 TCCCATTCTAGTGTGATTGCA 57.001 42.857 0.00 0.00 0.00 4.08
2827 2896 4.412528 GGAGGTTTGGTATCCCATTCTAGT 59.587 45.833 0.00 0.00 41.49 2.57
2828 2897 4.974399 GGAGGTTTGGTATCCCATTCTAG 58.026 47.826 0.00 0.00 41.49 2.43
2836 2905 6.921486 TTTTTAAAGGGAGGTTTGGTATCC 57.079 37.500 0.00 0.00 0.00 2.59
2858 2927 7.875327 AGAGTTACAACACTACCACATTTTT 57.125 32.000 0.00 0.00 0.00 1.94
2859 2928 7.338449 ACAAGAGTTACAACACTACCACATTTT 59.662 33.333 0.00 0.00 0.00 1.82
2861 2930 6.354130 ACAAGAGTTACAACACTACCACATT 58.646 36.000 0.00 0.00 0.00 2.71
2862 2931 5.925509 ACAAGAGTTACAACACTACCACAT 58.074 37.500 0.00 0.00 0.00 3.21
2863 2932 5.347620 ACAAGAGTTACAACACTACCACA 57.652 39.130 0.00 0.00 0.00 4.17
2864 2933 5.503520 GCAACAAGAGTTACAACACTACCAC 60.504 44.000 0.00 0.00 35.85 4.16
2905 3034 0.546122 TTCTGGTGCTATGGCCGATT 59.454 50.000 0.00 0.00 37.74 3.34
2909 3038 2.158696 AGATCTTTCTGGTGCTATGGCC 60.159 50.000 0.00 0.00 37.74 5.36
2961 3090 8.004801 TCTACAGTATCCAGGATATTGAACAGA 58.995 37.037 29.85 24.06 36.30 3.41
2965 3094 6.208797 CCGTCTACAGTATCCAGGATATTGAA 59.791 42.308 29.85 16.24 36.30 2.69
2977 3106 2.879646 CTCCCTCACCGTCTACAGTATC 59.120 54.545 0.00 0.00 0.00 2.24
2991 3120 2.561419 CAAGTAAACTCCGACTCCCTCA 59.439 50.000 0.00 0.00 0.00 3.86
3050 3179 3.376935 CTGGTCCATTCCGCGAGCT 62.377 63.158 8.23 0.00 0.00 4.09
3052 3181 2.892425 GCTGGTCCATTCCGCGAG 60.892 66.667 8.23 0.00 0.00 5.03
3067 3196 3.397439 ATCGGACTGCTGCAGGCT 61.397 61.111 32.49 13.95 39.87 4.58
3073 3202 0.179100 CCTACACCATCGGACTGCTG 60.179 60.000 0.00 0.00 0.00 4.41
3077 3206 2.423898 CGCCCTACACCATCGGACT 61.424 63.158 0.00 0.00 0.00 3.85
3078 3207 2.106332 CGCCCTACACCATCGGAC 59.894 66.667 0.00 0.00 0.00 4.79
3080 3209 4.910585 GGCGCCCTACACCATCGG 62.911 72.222 18.11 0.00 0.00 4.18
3100 3229 4.578928 GGAAAATGTACACTGTCCACTGTT 59.421 41.667 8.70 0.00 0.00 3.16
3103 3232 4.431416 TGGAAAATGTACACTGTCCACT 57.569 40.909 12.26 0.00 30.27 4.00
3115 3244 1.886542 GCCTCCTCGTTTGGAAAATGT 59.113 47.619 0.00 0.00 35.43 2.71
3116 3245 1.135689 CGCCTCCTCGTTTGGAAAATG 60.136 52.381 0.00 0.00 35.43 2.32
3118 3247 0.887387 CCGCCTCCTCGTTTGGAAAA 60.887 55.000 0.00 0.00 35.43 2.29
3120 3251 2.167398 CTCCGCCTCCTCGTTTGGAA 62.167 60.000 0.00 0.00 35.43 3.53
3125 3256 2.283676 TTCCTCCGCCTCCTCGTT 60.284 61.111 0.00 0.00 0.00 3.85
3136 3267 4.452733 CGAGCCACGGGTTCCTCC 62.453 72.222 0.00 0.00 38.46 4.30
3146 3277 2.434359 GTACAGCCACCGAGCCAC 60.434 66.667 0.00 0.00 0.00 5.01
3147 3278 3.702048 GGTACAGCCACCGAGCCA 61.702 66.667 0.00 0.00 37.17 4.75
3170 3301 3.706698 TCGAGCTATTTGACTCATTCCG 58.293 45.455 0.00 0.00 32.98 4.30
3179 3310 2.846039 GTCGTCCTCGAGCTATTTGA 57.154 50.000 6.99 0.00 46.96 2.69
3195 3326 3.357079 GCAGCTTGGTGTGGGTCG 61.357 66.667 1.78 0.00 0.00 4.79
3203 3334 2.217038 TCCTCTTCGGCAGCTTGGT 61.217 57.895 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.