Multiple sequence alignment - TraesCS7B01G460800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G460800 chr7B 100.000 7171 0 0 1 7171 718341835 718334665 0.000000e+00 13243.0
1 TraesCS7B01G460800 chr7B 79.581 764 128 23 6417 7163 218233930 218233178 8.240000e-144 521.0
2 TraesCS7B01G460800 chr7B 80.762 499 88 8 3013 3507 719083063 719082569 4.060000e-102 383.0
3 TraesCS7B01G460800 chr7B 76.136 528 106 20 1044 1565 718851591 718851078 7.140000e-65 259.0
4 TraesCS7B01G460800 chr7B 74.454 595 128 23 1611 2195 99655788 99655208 1.200000e-57 235.0
5 TraesCS7B01G460800 chr7D 97.319 2275 48 8 2911 5181 621661149 621663414 0.000000e+00 3851.0
6 TraesCS7B01G460800 chr7D 95.666 2261 69 10 647 2881 621658900 621661157 0.000000e+00 3605.0
7 TraesCS7B01G460800 chr7D 94.697 1999 94 9 5169 7164 621664345 621666334 0.000000e+00 3094.0
8 TraesCS7B01G460800 chr7D 79.431 773 119 27 6422 7167 490906344 490905585 1.780000e-140 510.0
9 TraesCS7B01G460800 chr7D 92.405 316 8 4 1 303 621658474 621658786 3.070000e-118 436.0
10 TraesCS7B01G460800 chr7D 81.124 498 88 6 3013 3507 620985575 620985081 1.880000e-105 394.0
11 TraesCS7B01G460800 chr7D 86.449 214 23 6 419 630 527916730 527916939 5.600000e-56 230.0
12 TraesCS7B01G460800 chr7D 92.025 163 13 0 647 809 621657600 621657762 5.600000e-56 230.0
13 TraesCS7B01G460800 chr7D 83.744 203 30 3 1994 2194 69250952 69251153 9.500000e-44 189.0
14 TraesCS7B01G460800 chr2B 80.916 786 111 28 6411 7171 212018191 212018962 1.040000e-162 584.0
15 TraesCS7B01G460800 chr4D 80.834 767 124 17 6418 7171 448345957 448345201 1.340000e-161 580.0
16 TraesCS7B01G460800 chr4D 79.464 784 121 28 6417 7171 414080787 414080015 2.960000e-143 520.0
17 TraesCS7B01G460800 chr4D 83.249 394 64 2 1801 2194 6711938 6711547 1.900000e-95 361.0
18 TraesCS7B01G460800 chr4D 90.860 186 12 5 454 638 318476237 318476418 2.000000e-60 244.0
19 TraesCS7B01G460800 chr4A 80.896 759 114 22 6418 7162 492165027 492165768 2.900000e-158 569.0
20 TraesCS7B01G460800 chr4A 78.667 225 43 5 1981 2203 672279534 672279313 2.080000e-30 145.0
21 TraesCS7B01G460800 chr2D 80.541 776 114 25 6422 7171 166135145 166134381 4.860000e-156 562.0
22 TraesCS7B01G460800 chr2D 100.000 28 0 0 1818 1845 381245668 381245695 1.300000e-02 52.8
23 TraesCS7B01G460800 chr5B 80.155 776 119 19 6422 7171 329063081 329062315 1.360000e-151 547.0
24 TraesCS7B01G460800 chr5B 76.795 599 127 11 1607 2200 544782592 544782001 6.940000e-85 326.0
25 TraesCS7B01G460800 chr5B 84.746 59 9 0 2426 2484 519251133 519251075 7.770000e-05 60.2
26 TraesCS7B01G460800 chr1D 79.742 775 117 25 6418 7163 389206669 389207432 6.370000e-145 525.0
27 TraesCS7B01G460800 chr1D 92.157 51 3 1 2427 2477 180171558 180171509 3.590000e-08 71.3
28 TraesCS7B01G460800 chr1D 92.157 51 3 1 2427 2477 180246011 180245962 3.590000e-08 71.3
29 TraesCS7B01G460800 chr7A 79.819 773 107 32 6422 7166 564606282 564605531 1.070000e-142 518.0
30 TraesCS7B01G460800 chr3D 79.231 780 126 23 6418 7171 291693378 291694147 1.780000e-140 510.0
31 TraesCS7B01G460800 chr3D 94.675 169 7 2 455 622 526050789 526050622 1.980000e-65 261.0
32 TraesCS7B01G460800 chr3D 93.529 170 9 2 455 623 433161449 433161281 1.190000e-62 252.0
33 TraesCS7B01G460800 chr3D 93.529 170 9 2 455 623 550509596 550509428 1.190000e-62 252.0
34 TraesCS7B01G460800 chr3D 82.648 219 36 2 1977 2194 17402606 17402389 7.340000e-45 193.0
35 TraesCS7B01G460800 chr2A 79.342 760 117 28 6417 7150 53439139 53439884 1.390000e-136 497.0
36 TraesCS7B01G460800 chr5D 78.764 631 98 24 6564 7171 489406097 489406714 2.430000e-104 390.0
37 TraesCS7B01G460800 chr5D 92.045 176 12 2 455 630 339108722 339108895 5.560000e-61 246.0
38 TraesCS7B01G460800 chr5D 100.000 30 0 0 4994 5023 438374431 438374402 1.000000e-03 56.5
39 TraesCS7B01G460800 chr6A 93.642 173 9 2 451 622 420829507 420829336 2.570000e-64 257.0
40 TraesCS7B01G460800 chr5A 93.529 170 9 2 452 620 519947333 519947501 1.190000e-62 252.0
41 TraesCS7B01G460800 chr3B 91.111 180 16 0 440 619 46103031 46103210 2.000000e-60 244.0
42 TraesCS7B01G460800 chr6B 81.308 214 40 0 1982 2195 526964637 526964424 2.660000e-39 174.0
43 TraesCS7B01G460800 chr6D 81.818 198 36 0 1997 2194 24268422 24268619 4.450000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G460800 chr7B 718334665 718341835 7170 True 13243.0 13243 100.0000 1 7171 1 chr7B.!!$R3 7170
1 TraesCS7B01G460800 chr7B 218233178 218233930 752 True 521.0 521 79.5810 6417 7163 1 chr7B.!!$R2 746
2 TraesCS7B01G460800 chr7B 718851078 718851591 513 True 259.0 259 76.1360 1044 1565 1 chr7B.!!$R4 521
3 TraesCS7B01G460800 chr7B 99655208 99655788 580 True 235.0 235 74.4540 1611 2195 1 chr7B.!!$R1 584
4 TraesCS7B01G460800 chr7D 621657600 621666334 8734 False 2243.2 3851 94.4224 1 7164 5 chr7D.!!$F3 7163
5 TraesCS7B01G460800 chr7D 490905585 490906344 759 True 510.0 510 79.4310 6422 7167 1 chr7D.!!$R1 745
6 TraesCS7B01G460800 chr2B 212018191 212018962 771 False 584.0 584 80.9160 6411 7171 1 chr2B.!!$F1 760
7 TraesCS7B01G460800 chr4D 448345201 448345957 756 True 580.0 580 80.8340 6418 7171 1 chr4D.!!$R3 753
8 TraesCS7B01G460800 chr4D 414080015 414080787 772 True 520.0 520 79.4640 6417 7171 1 chr4D.!!$R2 754
9 TraesCS7B01G460800 chr4A 492165027 492165768 741 False 569.0 569 80.8960 6418 7162 1 chr4A.!!$F1 744
10 TraesCS7B01G460800 chr2D 166134381 166135145 764 True 562.0 562 80.5410 6422 7171 1 chr2D.!!$R1 749
11 TraesCS7B01G460800 chr5B 329062315 329063081 766 True 547.0 547 80.1550 6422 7171 1 chr5B.!!$R1 749
12 TraesCS7B01G460800 chr5B 544782001 544782592 591 True 326.0 326 76.7950 1607 2200 1 chr5B.!!$R3 593
13 TraesCS7B01G460800 chr1D 389206669 389207432 763 False 525.0 525 79.7420 6418 7163 1 chr1D.!!$F1 745
14 TraesCS7B01G460800 chr7A 564605531 564606282 751 True 518.0 518 79.8190 6422 7166 1 chr7A.!!$R1 744
15 TraesCS7B01G460800 chr3D 291693378 291694147 769 False 510.0 510 79.2310 6418 7171 1 chr3D.!!$F1 753
16 TraesCS7B01G460800 chr2A 53439139 53439884 745 False 497.0 497 79.3420 6417 7150 1 chr2A.!!$F1 733
17 TraesCS7B01G460800 chr5D 489406097 489406714 617 False 390.0 390 78.7640 6564 7171 1 chr5D.!!$F2 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 1199 0.034337 ACGCTAGACTTTTCCCGCAA 59.966 50.0 0.00 0.00 0.00 4.85 F
843 1747 0.322816 TGCAAGGATCCCTCAAGTGC 60.323 55.0 8.55 9.38 30.89 4.40 F
2514 3421 0.250252 TGCTGCGTGAATCAGTTGGA 60.250 50.0 0.00 0.00 34.21 3.53 F
3381 4305 0.657840 GTGAAATCTCCGCCCAATCG 59.342 55.0 0.00 0.00 0.00 3.34 F
5284 7155 0.916086 TACCACATAGGCCCAACTGG 59.084 55.0 0.00 1.80 43.14 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2940 0.958822 GATCCAAAACACGGGCACTT 59.041 50.000 0.0 0.0 0.00 3.16 R
2841 3765 1.202698 CCCCTAGCTCCAAATCTTCCG 60.203 57.143 0.0 0.0 0.00 4.30 R
3443 4367 0.035152 TGCGGATGGCTGATTGTCTT 60.035 50.000 0.0 0.0 44.05 3.01 R
5359 7230 0.523072 AAGTCATCAATGCGTGTGCC 59.477 50.000 0.0 0.0 41.78 5.01 R
6372 8244 0.400213 CCCTTAGTTGTGTCAGCCCA 59.600 55.000 0.0 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 974 2.290641 AGAACTTCATGTGCCGTTCAAC 59.709 45.455 15.72 0.00 38.50 3.18
132 1014 5.455849 CCTCGTGTAGTTAGTCATTTCATCG 59.544 44.000 0.00 0.00 0.00 3.84
150 1032 3.627395 TCGGAATCCAATGCTGTAACT 57.373 42.857 0.00 0.00 0.00 2.24
151 1033 4.746535 TCGGAATCCAATGCTGTAACTA 57.253 40.909 0.00 0.00 0.00 2.24
152 1034 4.439057 TCGGAATCCAATGCTGTAACTAC 58.561 43.478 0.00 0.00 0.00 2.73
188 1071 5.717178 ACATAGGTATCACTCGCTATTGGAT 59.283 40.000 0.00 0.00 0.00 3.41
219 1102 3.900941 AGGCAACGCTATTGAAAACTTG 58.099 40.909 1.99 0.00 46.39 3.16
225 1108 6.619874 GCAACGCTATTGAAAACTTGCTACTA 60.620 38.462 1.99 0.00 31.80 1.82
277 1160 6.071165 GGTTCAAATCCATGGTTTCTTGATCT 60.071 38.462 12.58 0.00 0.00 2.75
295 1183 3.844577 TCTACTCCTCACAAGTTACGC 57.155 47.619 0.00 0.00 0.00 4.42
303 1191 4.280174 TCCTCACAAGTTACGCTAGACTTT 59.720 41.667 0.00 0.00 34.04 2.66
304 1192 4.989168 CCTCACAAGTTACGCTAGACTTTT 59.011 41.667 0.00 0.00 34.04 2.27
305 1193 5.118817 CCTCACAAGTTACGCTAGACTTTTC 59.881 44.000 0.00 0.00 34.04 2.29
306 1194 4.986659 TCACAAGTTACGCTAGACTTTTCC 59.013 41.667 0.00 0.00 34.04 3.13
307 1195 4.151867 CACAAGTTACGCTAGACTTTTCCC 59.848 45.833 0.00 0.00 34.04 3.97
308 1196 3.227810 AGTTACGCTAGACTTTTCCCG 57.772 47.619 0.00 0.00 0.00 5.14
309 1197 1.657594 GTTACGCTAGACTTTTCCCGC 59.342 52.381 0.00 0.00 0.00 6.13
310 1198 0.889994 TACGCTAGACTTTTCCCGCA 59.110 50.000 0.00 0.00 0.00 5.69
311 1199 0.034337 ACGCTAGACTTTTCCCGCAA 59.966 50.000 0.00 0.00 0.00 4.85
312 1200 1.153353 CGCTAGACTTTTCCCGCAAA 58.847 50.000 0.00 0.00 0.00 3.68
313 1201 1.533731 CGCTAGACTTTTCCCGCAAAA 59.466 47.619 0.00 0.00 32.77 2.44
314 1202 2.031508 CGCTAGACTTTTCCCGCAAAAA 60.032 45.455 0.00 0.00 33.40 1.94
337 1225 1.156736 AGTTACGCCACACATGAAGC 58.843 50.000 0.00 0.00 0.00 3.86
348 1236 4.436050 CCACACATGAAGCGAGATTTGTAC 60.436 45.833 0.00 0.00 0.00 2.90
366 1262 1.002366 ACGACTACTACGGCACTACG 58.998 55.000 0.00 0.00 40.31 3.51
384 1280 2.047274 CCGCACGGTGATGAAGGT 60.047 61.111 13.29 0.00 0.00 3.50
398 1294 6.403878 GTGATGAAGGTGGTTTAGCTAGTTA 58.596 40.000 0.00 0.00 35.72 2.24
399 1295 6.535508 GTGATGAAGGTGGTTTAGCTAGTTAG 59.464 42.308 0.00 0.00 35.72 2.34
400 1296 5.416271 TGAAGGTGGTTTAGCTAGTTAGG 57.584 43.478 0.00 0.00 35.72 2.69
401 1297 4.842380 TGAAGGTGGTTTAGCTAGTTAGGT 59.158 41.667 0.00 0.00 35.72 3.08
402 1298 6.018469 TGAAGGTGGTTTAGCTAGTTAGGTA 58.982 40.000 0.00 0.00 35.72 3.08
403 1299 6.497954 TGAAGGTGGTTTAGCTAGTTAGGTAA 59.502 38.462 6.70 6.70 42.52 2.85
404 1300 6.291648 AGGTGGTTTAGCTAGTTAGGTAAC 57.708 41.667 9.62 0.00 43.50 2.50
405 1301 5.105063 GGTGGTTTAGCTAGTTAGGTAACG 58.895 45.833 9.62 0.00 43.50 3.18
406 1302 4.564372 GTGGTTTAGCTAGTTAGGTAACGC 59.436 45.833 9.62 6.76 43.50 4.84
407 1303 4.220382 TGGTTTAGCTAGTTAGGTAACGCA 59.780 41.667 9.62 0.00 43.50 5.24
408 1304 4.564372 GGTTTAGCTAGTTAGGTAACGCAC 59.436 45.833 9.62 6.60 43.50 5.34
456 1352 7.042523 AGGTAACACACACGTTTTCTTATGTAC 60.043 37.037 0.00 0.00 41.41 2.90
457 1353 6.913873 AACACACACGTTTTCTTATGTACT 57.086 33.333 0.00 0.00 0.00 2.73
458 1354 6.520792 ACACACACGTTTTCTTATGTACTC 57.479 37.500 0.00 0.00 0.00 2.59
459 1355 5.464389 ACACACACGTTTTCTTATGTACTCC 59.536 40.000 0.00 0.00 0.00 3.85
460 1356 4.992951 ACACACGTTTTCTTATGTACTCCC 59.007 41.667 0.00 0.00 0.00 4.30
461 1357 5.221581 ACACACGTTTTCTTATGTACTCCCT 60.222 40.000 0.00 0.00 0.00 4.20
462 1358 5.347907 CACACGTTTTCTTATGTACTCCCTC 59.652 44.000 0.00 0.00 0.00 4.30
463 1359 4.868734 CACGTTTTCTTATGTACTCCCTCC 59.131 45.833 0.00 0.00 0.00 4.30
464 1360 4.110482 CGTTTTCTTATGTACTCCCTCCG 58.890 47.826 0.00 0.00 0.00 4.63
465 1361 4.381292 CGTTTTCTTATGTACTCCCTCCGT 60.381 45.833 0.00 0.00 0.00 4.69
466 1362 5.485620 GTTTTCTTATGTACTCCCTCCGTT 58.514 41.667 0.00 0.00 0.00 4.44
467 1363 5.750352 TTTCTTATGTACTCCCTCCGTTT 57.250 39.130 0.00 0.00 0.00 3.60
468 1364 4.996788 TCTTATGTACTCCCTCCGTTTC 57.003 45.455 0.00 0.00 0.00 2.78
469 1365 4.607239 TCTTATGTACTCCCTCCGTTTCT 58.393 43.478 0.00 0.00 0.00 2.52
470 1366 5.759059 TCTTATGTACTCCCTCCGTTTCTA 58.241 41.667 0.00 0.00 0.00 2.10
471 1367 6.189859 TCTTATGTACTCCCTCCGTTTCTAA 58.810 40.000 0.00 0.00 0.00 2.10
472 1368 6.664816 TCTTATGTACTCCCTCCGTTTCTAAA 59.335 38.462 0.00 0.00 0.00 1.85
473 1369 5.952347 ATGTACTCCCTCCGTTTCTAAAT 57.048 39.130 0.00 0.00 0.00 1.40
474 1370 5.080969 TGTACTCCCTCCGTTTCTAAATG 57.919 43.478 0.00 0.00 0.00 2.32
475 1371 4.529377 TGTACTCCCTCCGTTTCTAAATGT 59.471 41.667 0.00 0.00 0.00 2.71
476 1372 5.716228 TGTACTCCCTCCGTTTCTAAATGTA 59.284 40.000 0.00 0.00 0.00 2.29
477 1373 5.750352 ACTCCCTCCGTTTCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
478 1374 5.731591 ACTCCCTCCGTTTCTAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
479 1375 5.247792 ACTCCCTCCGTTTCTAAATGTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
480 1376 5.727434 TCCCTCCGTTTCTAAATGTAAGTC 58.273 41.667 0.00 0.00 0.00 3.01
481 1377 5.482878 TCCCTCCGTTTCTAAATGTAAGTCT 59.517 40.000 0.00 0.00 0.00 3.24
482 1378 6.013984 TCCCTCCGTTTCTAAATGTAAGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
483 1379 6.653740 CCCTCCGTTTCTAAATGTAAGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
484 1380 7.174426 CCCTCCGTTTCTAAATGTAAGTCTTTT 59.826 37.037 0.00 0.00 0.00 2.27
485 1381 8.565416 CCTCCGTTTCTAAATGTAAGTCTTTTT 58.435 33.333 0.00 0.00 0.00 1.94
512 1408 9.295825 AGAATTTCCAACAAATGACTACATACA 57.704 29.630 0.00 0.00 35.50 2.29
513 1409 9.559958 GAATTTCCAACAAATGACTACATACAG 57.440 33.333 0.00 0.00 35.50 2.74
514 1410 8.862325 ATTTCCAACAAATGACTACATACAGA 57.138 30.769 0.00 0.00 35.50 3.41
515 1411 7.905604 TTCCAACAAATGACTACATACAGAG 57.094 36.000 0.00 0.00 35.50 3.35
516 1412 7.004555 TCCAACAAATGACTACATACAGAGT 57.995 36.000 0.00 0.00 35.50 3.24
517 1413 8.129496 TCCAACAAATGACTACATACAGAGTA 57.871 34.615 0.00 0.00 35.50 2.59
518 1414 8.590204 TCCAACAAATGACTACATACAGAGTAA 58.410 33.333 0.00 0.00 35.50 2.24
519 1415 9.214957 CCAACAAATGACTACATACAGAGTAAA 57.785 33.333 0.00 0.00 35.50 2.01
526 1422 9.809096 ATGACTACATACAGAGTAAAATGAGTG 57.191 33.333 0.00 0.00 34.71 3.51
527 1423 9.020731 TGACTACATACAGAGTAAAATGAGTGA 57.979 33.333 0.00 0.00 0.00 3.41
528 1424 9.856488 GACTACATACAGAGTAAAATGAGTGAA 57.144 33.333 0.00 0.00 0.00 3.18
535 1431 8.764524 ACAGAGTAAAATGAGTGAATCTACAC 57.235 34.615 0.00 0.00 40.60 2.90
549 1445 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
595 1491 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
596 1492 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
613 1509 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
614 1510 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
615 1511 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
616 1512 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
617 1513 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
618 1514 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
619 1515 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
620 1516 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
622 1518 8.912614 ATATTTAGGAACGGAGGGAGTATATT 57.087 34.615 0.00 0.00 0.00 1.28
624 1520 7.771927 TTTAGGAACGGAGGGAGTATATTAG 57.228 40.000 0.00 0.00 0.00 1.73
625 1521 4.087907 AGGAACGGAGGGAGTATATTAGC 58.912 47.826 0.00 0.00 0.00 3.09
626 1522 3.830755 GGAACGGAGGGAGTATATTAGCA 59.169 47.826 0.00 0.00 0.00 3.49
627 1523 4.282703 GGAACGGAGGGAGTATATTAGCAA 59.717 45.833 0.00 0.00 0.00 3.91
628 1524 5.046520 GGAACGGAGGGAGTATATTAGCAAT 60.047 44.000 0.00 0.00 0.00 3.56
629 1525 5.407407 ACGGAGGGAGTATATTAGCAATG 57.593 43.478 0.00 0.00 0.00 2.82
630 1526 4.184629 CGGAGGGAGTATATTAGCAATGC 58.815 47.826 0.00 0.00 0.00 3.56
631 1527 4.322725 CGGAGGGAGTATATTAGCAATGCA 60.323 45.833 8.35 0.00 0.00 3.96
632 1528 5.627735 CGGAGGGAGTATATTAGCAATGCAT 60.628 44.000 8.35 0.00 0.00 3.96
633 1529 5.587844 GGAGGGAGTATATTAGCAATGCATG 59.412 44.000 8.35 0.00 0.00 4.06
634 1530 6.131972 AGGGAGTATATTAGCAATGCATGT 57.868 37.500 8.35 0.00 0.00 3.21
635 1531 6.546484 AGGGAGTATATTAGCAATGCATGTT 58.454 36.000 8.35 0.00 0.00 2.71
636 1532 7.006509 AGGGAGTATATTAGCAATGCATGTTT 58.993 34.615 8.35 0.00 0.00 2.83
637 1533 7.506938 AGGGAGTATATTAGCAATGCATGTTTT 59.493 33.333 8.35 0.00 0.00 2.43
638 1534 8.143835 GGGAGTATATTAGCAATGCATGTTTTT 58.856 33.333 8.35 0.00 0.00 1.94
738 1634 3.008049 AGGCTCCGTCAAGTCAACTTAAT 59.992 43.478 0.00 0.00 34.28 1.40
754 1650 7.281100 GTCAACTTAATTACCCATCTTCCTCTG 59.719 40.741 0.00 0.00 0.00 3.35
779 1683 7.071950 TGGGTAGCTTCATTTATATGTACACCT 59.928 37.037 0.00 0.00 33.34 4.00
782 1686 6.356556 AGCTTCATTTATATGTACACCTGCA 58.643 36.000 0.00 0.00 33.34 4.41
843 1747 0.322816 TGCAAGGATCCCTCAAGTGC 60.323 55.000 8.55 9.38 30.89 4.40
882 1786 2.496070 TGCCTCTTGTACAGCTCGTTAT 59.504 45.455 6.41 0.00 0.00 1.89
883 1787 3.697542 TGCCTCTTGTACAGCTCGTTATA 59.302 43.478 6.41 0.00 0.00 0.98
910 1814 4.351111 AGATGTTCTTAGAACCACCCTGTT 59.649 41.667 20.69 0.00 0.00 3.16
942 1846 5.830991 TGCATTTAAACTGTACTCCTTTGGT 59.169 36.000 0.00 0.00 0.00 3.67
1258 2163 0.768221 AGGGAACAGTGCCAGAAGGA 60.768 55.000 0.00 0.00 37.83 3.36
1273 2178 3.192212 CAGAAGGAGGAAAAGTGATTGCC 59.808 47.826 0.00 0.00 36.91 4.52
1435 2340 8.790718 GTGCAGTTCAATGGAAGATATATTCAT 58.209 33.333 11.95 1.71 32.62 2.57
1578 2483 6.908825 TCTTGGTTGTAGGAAAAATGATTCG 58.091 36.000 0.00 0.00 0.00 3.34
1662 2567 1.293498 GCAAAGAGTCCTCTCGGCA 59.707 57.895 12.58 0.00 44.65 5.69
1764 2670 1.448893 TGTCCTTTCGGCGTATGGC 60.449 57.895 6.85 6.38 42.51 4.40
1773 2679 4.157120 GCGTATGGCGTGGGACCT 62.157 66.667 0.00 0.00 43.66 3.85
1807 2713 3.343972 CCACGTGGCTGTTTCCTG 58.656 61.111 24.02 0.00 0.00 3.86
1970 2876 0.526211 GGCAAACTCCATTTCCGTCC 59.474 55.000 0.00 0.00 0.00 4.79
1987 2893 2.635338 CGTCGTCCGTGAGTCACA 59.365 61.111 22.66 1.39 33.40 3.58
2180 3087 2.643232 GGTTCTCGGCGTAGGGTGT 61.643 63.158 6.85 0.00 0.00 4.16
2202 3109 5.070446 TGTGATTCCAGTAGTGATGATACCC 59.930 44.000 0.00 0.00 0.00 3.69
2203 3110 4.593206 TGATTCCAGTAGTGATGATACCCC 59.407 45.833 0.00 0.00 0.00 4.95
2204 3111 2.594131 TCCAGTAGTGATGATACCCCG 58.406 52.381 0.00 0.00 0.00 5.73
2205 3112 2.091499 TCCAGTAGTGATGATACCCCGT 60.091 50.000 0.00 0.00 0.00 5.28
2401 3308 3.340034 CTTTTTGCATCCATGGTTGCAT 58.660 40.909 38.27 13.83 46.11 3.96
2421 3328 2.193993 TGTAGAGGTAGGCTTTTCCCC 58.806 52.381 0.00 0.00 34.51 4.81
2432 3339 1.676615 GCTTTTCCCCATGCATGGTTG 60.677 52.381 37.30 28.80 46.65 3.77
2502 3409 4.908687 TCCTGCGTGTTGCTGCGT 62.909 61.111 0.00 0.00 46.63 5.24
2513 3420 0.592637 TTGCTGCGTGAATCAGTTGG 59.407 50.000 0.00 0.00 34.21 3.77
2514 3421 0.250252 TGCTGCGTGAATCAGTTGGA 60.250 50.000 0.00 0.00 34.21 3.53
2647 3569 6.634436 GGAGCAAAAGTATTATTTCTCATGCG 59.366 38.462 0.00 0.00 33.51 4.73
2660 3582 3.059884 TCTCATGCGTGTTGAGAGAAAC 58.940 45.455 5.68 0.00 43.49 2.78
2709 3633 7.148255 GGTGTGTGCATATGTTGAGAGAAATAA 60.148 37.037 4.29 0.00 0.00 1.40
2803 3727 9.271828 GGTGACATGACATATGTGTATATTGAA 57.728 33.333 14.43 0.00 39.09 2.69
2841 3765 9.148104 CGGGGTTCAACTATTTAAGTATATAGC 57.852 37.037 0.00 0.00 37.50 2.97
2843 3767 9.148104 GGGTTCAACTATTTAAGTATATAGCGG 57.852 37.037 0.00 0.00 37.50 5.52
2880 3804 3.451402 GGTACCCCTTTCTGGATGTTT 57.549 47.619 0.00 0.00 38.35 2.83
2881 3805 3.089284 GGTACCCCTTTCTGGATGTTTG 58.911 50.000 0.00 0.00 38.35 2.93
2882 3806 1.632589 ACCCCTTTCTGGATGTTTGC 58.367 50.000 0.00 0.00 38.35 3.68
2883 3807 1.133199 ACCCCTTTCTGGATGTTTGCA 60.133 47.619 0.00 0.00 38.35 4.08
2884 3808 1.547372 CCCCTTTCTGGATGTTTGCAG 59.453 52.381 0.00 0.00 42.29 4.41
2885 3809 2.242043 CCCTTTCTGGATGTTTGCAGT 58.758 47.619 0.00 0.00 41.68 4.40
2886 3810 2.629617 CCCTTTCTGGATGTTTGCAGTT 59.370 45.455 0.00 0.00 41.68 3.16
2887 3811 3.070015 CCCTTTCTGGATGTTTGCAGTTT 59.930 43.478 0.00 0.00 41.68 2.66
2888 3812 4.443315 CCCTTTCTGGATGTTTGCAGTTTT 60.443 41.667 0.00 0.00 41.68 2.43
2889 3813 4.508861 CCTTTCTGGATGTTTGCAGTTTTG 59.491 41.667 0.00 0.00 41.68 2.44
2890 3814 4.998671 TTCTGGATGTTTGCAGTTTTGA 57.001 36.364 0.00 0.00 41.68 2.69
2891 3815 4.305989 TCTGGATGTTTGCAGTTTTGAC 57.694 40.909 0.00 0.00 41.68 3.18
2892 3816 3.698539 TCTGGATGTTTGCAGTTTTGACA 59.301 39.130 0.00 0.00 41.68 3.58
2893 3817 4.341806 TCTGGATGTTTGCAGTTTTGACAT 59.658 37.500 0.00 0.00 41.68 3.06
2894 3818 4.370049 TGGATGTTTGCAGTTTTGACATG 58.630 39.130 0.00 0.00 31.59 3.21
2895 3819 4.141981 TGGATGTTTGCAGTTTTGACATGT 60.142 37.500 0.00 0.00 31.59 3.21
2896 3820 4.445385 GGATGTTTGCAGTTTTGACATGTC 59.555 41.667 19.27 19.27 31.59 3.06
2897 3821 4.446994 TGTTTGCAGTTTTGACATGTCA 57.553 36.364 24.56 24.56 37.91 3.58
2898 3822 5.008619 TGTTTGCAGTTTTGACATGTCAT 57.991 34.783 28.32 11.57 39.64 3.06
2899 3823 5.042593 TGTTTGCAGTTTTGACATGTCATC 58.957 37.500 28.32 20.09 39.64 2.92
2900 3824 5.163530 TGTTTGCAGTTTTGACATGTCATCT 60.164 36.000 28.32 21.74 39.64 2.90
2901 3825 6.039159 TGTTTGCAGTTTTGACATGTCATCTA 59.961 34.615 28.32 11.95 39.64 1.98
2902 3826 6.822667 TTGCAGTTTTGACATGTCATCTAT 57.177 33.333 28.32 12.95 39.64 1.98
2903 3827 6.822667 TGCAGTTTTGACATGTCATCTATT 57.177 33.333 28.32 11.14 39.64 1.73
2904 3828 7.218228 TGCAGTTTTGACATGTCATCTATTT 57.782 32.000 28.32 10.23 39.64 1.40
2905 3829 7.307694 TGCAGTTTTGACATGTCATCTATTTC 58.692 34.615 28.32 15.10 39.64 2.17
2906 3830 7.175467 TGCAGTTTTGACATGTCATCTATTTCT 59.825 33.333 28.32 15.93 39.64 2.52
2907 3831 8.025445 GCAGTTTTGACATGTCATCTATTTCTT 58.975 33.333 28.32 5.90 39.64 2.52
2949 3873 6.070656 TCCATGTTTGAGATTCTTTGTCCTT 58.929 36.000 0.00 0.00 0.00 3.36
2981 3905 0.674895 CAGGGACCAAAGAAGGCGAG 60.675 60.000 0.00 0.00 0.00 5.03
3240 4164 8.668510 ATCGTAGTAAGCTCATCATGAAATTT 57.331 30.769 0.00 0.00 0.00 1.82
3316 4240 8.149973 TGGTATTGCCTATTTAACTTTCGATC 57.850 34.615 0.00 0.00 38.35 3.69
3317 4241 7.771361 TGGTATTGCCTATTTAACTTTCGATCA 59.229 33.333 0.00 0.00 38.35 2.92
3381 4305 0.657840 GTGAAATCTCCGCCCAATCG 59.342 55.000 0.00 0.00 0.00 3.34
3443 4367 1.561643 AGAGAGCAGAATTGTCCCGA 58.438 50.000 0.00 0.00 0.00 5.14
3720 4644 8.044060 TCGAAATTGTTGAGAAGCTATCATTT 57.956 30.769 2.62 1.30 0.00 2.32
3793 4717 6.542821 TCCTCCACTGAGTTGTTTCATTAAT 58.457 36.000 0.00 0.00 36.86 1.40
3868 4793 2.100584 GGTTGTTGCACACATCTTTGGA 59.899 45.455 0.00 0.00 34.43 3.53
3881 4806 7.535258 CACACATCTTTGGAAAATTTAGACTCG 59.465 37.037 0.00 0.00 0.00 4.18
3966 4893 7.994425 TTTCTAAGCAAACTATTGGACATCA 57.006 32.000 0.00 0.00 37.02 3.07
3979 4906 8.049117 ACTATTGGACATCATACACTTGAACAT 58.951 33.333 0.00 0.00 0.00 2.71
4012 4939 9.244292 GGAAAGGGTTTCTATATTTTCACTTCT 57.756 33.333 0.00 0.00 39.59 2.85
4139 5066 6.627087 TTGGACCTCTCAGAAATGTAGAAT 57.373 37.500 0.00 0.00 0.00 2.40
4167 5094 6.151648 TCTGAGTGGATAAAATTGCTTTCCTG 59.848 38.462 0.00 0.00 0.00 3.86
4186 5113 3.623060 CCTGGATGTGAAATTACCACGAG 59.377 47.826 0.00 0.00 37.34 4.18
4194 5121 6.259638 TGTGAAATTACCACGAGTTGAAAAC 58.740 36.000 0.00 0.00 41.35 2.43
4303 5230 9.484806 AAAAGTAATCCAGATGATGAAAGGAAT 57.515 29.630 0.00 0.00 32.68 3.01
4311 5238 5.996513 CAGATGATGAAAGGAATACTGGGAG 59.003 44.000 0.00 0.00 0.00 4.30
4320 5247 3.916989 AGGAATACTGGGAGTCCTTTTGT 59.083 43.478 9.58 5.73 37.17 2.83
4321 5248 4.354087 AGGAATACTGGGAGTCCTTTTGTT 59.646 41.667 9.58 0.00 37.17 2.83
4322 5249 4.459337 GGAATACTGGGAGTCCTTTTGTTG 59.541 45.833 9.58 0.00 0.00 3.33
4585 5512 8.633561 CACCATAGAAAGAAAATAGGAATTCCC 58.366 37.037 21.22 4.45 36.42 3.97
4614 5541 7.432869 AGAGATTGAGTAGTTGATGTCATAGC 58.567 38.462 0.00 0.00 0.00 2.97
4663 5590 3.339253 ACTAAATACGTGAACCCCACC 57.661 47.619 0.00 0.00 42.76 4.61
4702 5629 3.431673 TGTGAACATGCCACCTAATCA 57.568 42.857 14.03 0.00 33.80 2.57
4734 5661 4.141274 TGGATGGGAAAAGAGTCAACTCAA 60.141 41.667 12.43 0.00 45.21 3.02
4749 5676 9.328605 GAGTCAACTCAACATGTAACCATGCAA 62.329 40.741 0.00 0.00 45.34 4.08
4848 5775 4.568072 ATGCAACTACATAGGTGACCAA 57.432 40.909 8.17 0.00 43.66 3.67
4885 5812 1.693062 TCAAATGCAAACATGCCACCT 59.307 42.857 0.00 0.00 36.36 4.00
4890 5817 0.961019 GCAAACATGCCACCTGAAGA 59.039 50.000 0.00 0.00 0.00 2.87
5108 6036 9.571810 CATTTTCATGTTCCGATCTTATTGAAA 57.428 29.630 0.00 0.00 0.00 2.69
5150 6078 5.460748 TGCGGTATATATGACTCAAACGTTG 59.539 40.000 0.00 0.00 0.00 4.10
5221 7092 4.752101 GCAATCCAGCCAGTAAGTATGTAG 59.248 45.833 0.00 0.00 0.00 2.74
5230 7101 5.049543 GCCAGTAAGTATGTAGGAGTAGACG 60.050 48.000 0.00 0.00 0.00 4.18
5236 7107 9.875675 GTAAGTATGTAGGAGTAGACGTTATTG 57.124 37.037 0.00 0.00 0.00 1.90
5243 7114 5.012239 AGGAGTAGACGTTATTGTGGTACA 58.988 41.667 0.00 0.00 0.00 2.90
5247 7118 7.362056 GGAGTAGACGTTATTGTGGTACAACTA 60.362 40.741 1.23 0.00 44.16 2.24
5253 7124 7.553334 ACGTTATTGTGGTACAACTAGATCAT 58.447 34.615 1.23 0.00 44.16 2.45
5254 7125 8.689061 ACGTTATTGTGGTACAACTAGATCATA 58.311 33.333 1.23 0.00 44.16 2.15
5255 7126 9.524106 CGTTATTGTGGTACAACTAGATCATAA 57.476 33.333 1.23 0.00 44.16 1.90
5260 7131 9.952030 TTGTGGTACAACTAGATCATAATGAAA 57.048 29.630 1.23 0.00 44.16 2.69
5284 7155 0.916086 TACCACATAGGCCCAACTGG 59.084 55.000 0.00 1.80 43.14 4.00
5356 7227 1.459450 TGGAAAATAGCTTGCCGGTC 58.541 50.000 1.90 0.00 0.00 4.79
5359 7230 1.401905 GAAAATAGCTTGCCGGTCCAG 59.598 52.381 1.90 0.00 0.00 3.86
5390 7261 6.033831 CGCATTGATGACTTGTTATTCCAAAC 59.966 38.462 0.00 0.00 0.00 2.93
5392 7263 6.869315 TTGATGACTTGTTATTCCAAACGA 57.131 33.333 0.00 0.00 31.76 3.85
5473 7344 5.007682 ACGTTGGAGGTTTTGTTGCTATAT 58.992 37.500 0.00 0.00 0.00 0.86
5541 7412 5.576128 ACCCTTTCCTTTCGAAATCCATTA 58.424 37.500 11.70 0.00 39.73 1.90
5586 7457 8.903820 GTTGCATAAGGTATTTAAGAGTGGATT 58.096 33.333 0.00 0.00 0.00 3.01
5746 7617 6.909357 GGATTTCAAATGATAGAGTTGCTTCG 59.091 38.462 0.00 0.00 29.39 3.79
5792 7664 2.092323 TCAGTGATTCGGATCTCACGT 58.908 47.619 5.06 0.00 45.08 4.49
5798 7670 4.441415 GTGATTCGGATCTCACGTGTATTC 59.559 45.833 16.51 10.23 33.14 1.75
5813 7685 7.277760 TCACGTGTATTCTCCTTTGTTCATATG 59.722 37.037 16.51 0.00 0.00 1.78
5842 7714 3.127548 GTGTCATGCACATAGTCCTTTGG 59.872 47.826 13.27 0.00 46.91 3.28
5875 7747 9.219603 TCATTTGTTTTTCATGTTACAACCAAA 57.780 25.926 0.00 0.00 30.86 3.28
5928 7800 7.520798 TCCAGTCATTTATGATTCAATAGGCT 58.479 34.615 0.00 0.00 39.30 4.58
5949 7821 1.489649 AGGCATGAGATCTCAACCCTG 59.510 52.381 31.30 24.62 43.58 4.45
5984 7856 9.706691 TTCTATAGCTATGTTTTTAGAATCCCG 57.293 33.333 16.77 0.00 0.00 5.14
5986 7858 7.964604 ATAGCTATGTTTTTAGAATCCCGTC 57.035 36.000 5.15 0.00 0.00 4.79
5998 7870 1.789576 ATCCCGTCCACCAAAAGGCT 61.790 55.000 0.00 0.00 0.00 4.58
6074 7946 7.998383 TGATCATGTAGTTTATGGTAGGCATTT 59.002 33.333 0.00 0.00 0.00 2.32
6079 7951 7.573710 TGTAGTTTATGGTAGGCATTTCAGAT 58.426 34.615 0.00 0.00 0.00 2.90
6160 8032 0.550914 AGGTTCACTTCAGGCCACAA 59.449 50.000 5.01 0.00 0.00 3.33
6226 8098 6.552008 TCTATTTTGGAAGACCCTTTGATGT 58.448 36.000 0.00 0.00 35.38 3.06
6232 8104 4.082125 GGAAGACCCTTTGATGTCATGTT 58.918 43.478 0.00 0.00 33.89 2.71
6246 8118 9.898152 TTGATGTCATGTTAGTGTATATGGAAA 57.102 29.630 0.00 0.00 0.00 3.13
6297 8169 9.703892 TTTATAATACAATGCTGCAACTGTTTT 57.296 25.926 21.10 20.26 0.00 2.43
6309 8181 6.346838 GCTGCAACTGTTTTCCATGTTATTTC 60.347 38.462 0.00 0.00 0.00 2.17
6312 8184 6.705825 GCAACTGTTTTCCATGTTATTTCCTT 59.294 34.615 0.00 0.00 0.00 3.36
6325 8197 8.534496 CATGTTATTTCCTTGAATTTCTTCCCT 58.466 33.333 0.00 0.00 0.00 4.20
6327 8199 9.020731 TGTTATTTCCTTGAATTTCTTCCCTAC 57.979 33.333 0.00 0.00 0.00 3.18
6350 8222 3.212685 ACTAGATGTACCTACGTGAGCC 58.787 50.000 0.00 0.00 0.00 4.70
6420 8293 1.832998 CAATTGTCCCAAATGGAGGGG 59.167 52.381 0.00 0.00 46.38 4.79
6434 8307 2.290197 TGGAGGGGCAAATGCATTTTTC 60.290 45.455 21.95 15.64 44.36 2.29
6439 8312 3.308046 GGGGCAAATGCATTTTTCCCTTA 60.308 43.478 35.18 0.00 44.36 2.69
6451 8326 7.015682 TGCATTTTTCCCTTACTTGGAATTACA 59.984 33.333 0.00 0.00 41.36 2.41
7153 9066 2.158726 TCAAACGGTTAAAGGGCACTCT 60.159 45.455 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 974 0.392729 ACTACACGAGGACCGAGGAG 60.393 60.000 0.00 0.00 44.02 3.69
132 1014 4.523083 TGGTAGTTACAGCATTGGATTCC 58.477 43.478 0.00 0.00 0.00 3.01
150 1032 4.027674 ACCTATGTGTTGTGCAATGGTA 57.972 40.909 0.00 0.00 0.00 3.25
151 1033 2.875296 ACCTATGTGTTGTGCAATGGT 58.125 42.857 0.00 0.00 0.00 3.55
152 1034 4.639755 TGATACCTATGTGTTGTGCAATGG 59.360 41.667 0.00 0.00 0.00 3.16
188 1071 8.495361 TTCAATAGCGTTGCCTTTAAATAGTA 57.505 30.769 0.00 0.00 0.00 1.82
219 1102 5.738118 ATAGTTGACGTGTCTCTAGTAGC 57.262 43.478 0.00 0.00 0.00 3.58
225 1108 3.341823 ACCGTATAGTTGACGTGTCTCT 58.658 45.455 0.00 3.15 38.65 3.10
277 1160 4.394300 GTCTAGCGTAACTTGTGAGGAGTA 59.606 45.833 0.00 0.00 0.00 2.59
314 1202 4.606961 CTTCATGTGTGGCGTAACTTTTT 58.393 39.130 0.00 0.00 0.00 1.94
315 1203 3.550030 GCTTCATGTGTGGCGTAACTTTT 60.550 43.478 0.00 0.00 0.00 2.27
316 1204 2.031157 GCTTCATGTGTGGCGTAACTTT 60.031 45.455 0.00 0.00 0.00 2.66
317 1205 1.535462 GCTTCATGTGTGGCGTAACTT 59.465 47.619 0.00 0.00 0.00 2.66
318 1206 1.156736 GCTTCATGTGTGGCGTAACT 58.843 50.000 0.00 0.00 0.00 2.24
319 1207 0.179225 CGCTTCATGTGTGGCGTAAC 60.179 55.000 12.98 0.00 42.23 2.50
320 1208 0.319986 TCGCTTCATGTGTGGCGTAA 60.320 50.000 17.66 4.14 46.37 3.18
321 1209 0.735978 CTCGCTTCATGTGTGGCGTA 60.736 55.000 17.66 8.81 46.37 4.42
322 1210 2.029288 CTCGCTTCATGTGTGGCGT 61.029 57.895 17.66 0.00 46.37 5.68
324 1212 1.089920 AATCTCGCTTCATGTGTGGC 58.910 50.000 0.00 0.00 0.00 5.01
325 1213 2.485426 ACAAATCTCGCTTCATGTGTGG 59.515 45.455 0.00 0.00 0.00 4.17
326 1214 3.818961 ACAAATCTCGCTTCATGTGTG 57.181 42.857 0.00 0.00 0.00 3.82
331 1219 4.111375 AGTCGTACAAATCTCGCTTCAT 57.889 40.909 0.00 0.00 0.00 2.57
333 1221 4.660105 AGTAGTCGTACAAATCTCGCTTC 58.340 43.478 0.00 0.00 0.00 3.86
337 1225 4.512657 CCGTAGTAGTCGTACAAATCTCG 58.487 47.826 0.00 0.00 0.00 4.04
340 1228 3.788163 GTGCCGTAGTAGTCGTACAAATC 59.212 47.826 0.00 0.00 0.00 2.17
348 1236 0.315706 GCGTAGTGCCGTAGTAGTCG 60.316 60.000 0.00 0.00 37.76 4.18
366 1262 3.499737 CCTTCATCACCGTGCGGC 61.500 66.667 10.87 0.00 39.32 6.53
371 1267 2.874457 GCTAAACCACCTTCATCACCGT 60.874 50.000 0.00 0.00 0.00 4.83
373 1269 3.073274 AGCTAAACCACCTTCATCACC 57.927 47.619 0.00 0.00 0.00 4.02
382 1278 5.105063 CGTTACCTAACTAGCTAAACCACC 58.895 45.833 0.00 0.00 34.12 4.61
384 1280 4.220382 TGCGTTACCTAACTAGCTAAACCA 59.780 41.667 0.00 0.00 34.12 3.67
420 1316 5.876460 ACGTGTGTGTTACCTAACTCTTTTT 59.124 36.000 0.00 0.00 37.12 1.94
421 1317 5.422145 ACGTGTGTGTTACCTAACTCTTTT 58.578 37.500 0.00 0.00 37.12 2.27
422 1318 5.014808 ACGTGTGTGTTACCTAACTCTTT 57.985 39.130 0.00 0.00 37.12 2.52
423 1319 4.660789 ACGTGTGTGTTACCTAACTCTT 57.339 40.909 0.00 0.00 37.12 2.85
424 1320 4.660789 AACGTGTGTGTTACCTAACTCT 57.339 40.909 0.00 0.00 37.12 3.24
425 1321 5.521372 AGAAAACGTGTGTGTTACCTAACTC 59.479 40.000 0.00 0.00 37.12 3.01
426 1322 5.422145 AGAAAACGTGTGTGTTACCTAACT 58.578 37.500 0.00 0.00 37.12 2.24
427 1323 5.723492 AGAAAACGTGTGTGTTACCTAAC 57.277 39.130 0.00 0.00 36.74 2.34
428 1324 7.495279 ACATAAGAAAACGTGTGTGTTACCTAA 59.505 33.333 0.00 0.00 0.00 2.69
437 1333 4.992951 GGGAGTACATAAGAAAACGTGTGT 59.007 41.667 0.00 0.00 0.00 3.72
441 1337 4.381292 CGGAGGGAGTACATAAGAAAACGT 60.381 45.833 0.00 0.00 0.00 3.99
456 1352 5.731591 ACTTACATTTAGAAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
457 1353 5.482878 AGACTTACATTTAGAAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
458 1354 5.731591 AGACTTACATTTAGAAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
459 1355 7.668525 AAAGACTTACATTTAGAAACGGAGG 57.331 36.000 0.00 0.00 0.00 4.30
486 1382 9.295825 TGTATGTAGTCATTTGTTGGAAATTCT 57.704 29.630 0.00 0.00 35.70 2.40
487 1383 9.559958 CTGTATGTAGTCATTTGTTGGAAATTC 57.440 33.333 0.00 0.00 35.70 2.17
488 1384 9.295825 TCTGTATGTAGTCATTTGTTGGAAATT 57.704 29.630 0.00 0.00 35.70 1.82
489 1385 8.862325 TCTGTATGTAGTCATTTGTTGGAAAT 57.138 30.769 0.00 0.00 35.70 2.17
490 1386 7.936847 ACTCTGTATGTAGTCATTTGTTGGAAA 59.063 33.333 0.00 0.00 35.70 3.13
491 1387 7.450074 ACTCTGTATGTAGTCATTTGTTGGAA 58.550 34.615 0.00 0.00 35.70 3.53
492 1388 7.004555 ACTCTGTATGTAGTCATTTGTTGGA 57.995 36.000 0.00 0.00 35.70 3.53
493 1389 8.771920 TTACTCTGTATGTAGTCATTTGTTGG 57.228 34.615 0.00 0.00 35.70 3.77
500 1396 9.809096 CACTCATTTTACTCTGTATGTAGTCAT 57.191 33.333 0.00 0.00 38.00 3.06
501 1397 9.020731 TCACTCATTTTACTCTGTATGTAGTCA 57.979 33.333 0.00 0.00 0.00 3.41
502 1398 9.856488 TTCACTCATTTTACTCTGTATGTAGTC 57.144 33.333 0.00 0.00 0.00 2.59
509 1405 9.856488 GTGTAGATTCACTCATTTTACTCTGTA 57.144 33.333 0.00 0.00 35.68 2.74
510 1406 8.589338 AGTGTAGATTCACTCATTTTACTCTGT 58.411 33.333 0.00 0.00 44.07 3.41
511 1407 8.994429 AGTGTAGATTCACTCATTTTACTCTG 57.006 34.615 0.00 0.00 44.07 3.35
569 1465 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
570 1466 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
587 1483 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
588 1484 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
589 1485 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
590 1486 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
591 1487 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
592 1488 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
593 1489 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
594 1490 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
597 1493 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
598 1494 9.471702 CTAATATACTCCCTCCGTTCCTAAATA 57.528 37.037 0.00 0.00 0.00 1.40
599 1495 7.093421 GCTAATATACTCCCTCCGTTCCTAAAT 60.093 40.741 0.00 0.00 0.00 1.40
600 1496 6.210185 GCTAATATACTCCCTCCGTTCCTAAA 59.790 42.308 0.00 0.00 0.00 1.85
601 1497 5.713861 GCTAATATACTCCCTCCGTTCCTAA 59.286 44.000 0.00 0.00 0.00 2.69
602 1498 5.222192 TGCTAATATACTCCCTCCGTTCCTA 60.222 44.000 0.00 0.00 0.00 2.94
603 1499 4.087907 GCTAATATACTCCCTCCGTTCCT 58.912 47.826 0.00 0.00 0.00 3.36
604 1500 3.830755 TGCTAATATACTCCCTCCGTTCC 59.169 47.826 0.00 0.00 0.00 3.62
605 1501 5.464030 TTGCTAATATACTCCCTCCGTTC 57.536 43.478 0.00 0.00 0.00 3.95
606 1502 5.794894 CATTGCTAATATACTCCCTCCGTT 58.205 41.667 0.00 0.00 0.00 4.44
607 1503 4.322801 GCATTGCTAATATACTCCCTCCGT 60.323 45.833 0.16 0.00 0.00 4.69
608 1504 4.184629 GCATTGCTAATATACTCCCTCCG 58.815 47.826 0.16 0.00 0.00 4.63
609 1505 5.165961 TGCATTGCTAATATACTCCCTCC 57.834 43.478 10.49 0.00 0.00 4.30
610 1506 6.176183 ACATGCATTGCTAATATACTCCCTC 58.824 40.000 10.49 0.00 0.00 4.30
611 1507 6.131972 ACATGCATTGCTAATATACTCCCT 57.868 37.500 10.49 0.00 0.00 4.20
612 1508 6.824305 AACATGCATTGCTAATATACTCCC 57.176 37.500 10.49 0.00 0.00 4.30
637 1533 7.559533 TGATTAGATGCATTGCTACCCTAAAAA 59.440 33.333 10.49 3.24 0.00 1.94
638 1534 7.013274 GTGATTAGATGCATTGCTACCCTAAAA 59.987 37.037 10.49 3.52 0.00 1.52
639 1535 6.486657 GTGATTAGATGCATTGCTACCCTAAA 59.513 38.462 10.49 0.00 0.00 1.85
640 1536 5.997746 GTGATTAGATGCATTGCTACCCTAA 59.002 40.000 10.49 11.28 0.00 2.69
641 1537 5.071653 TGTGATTAGATGCATTGCTACCCTA 59.928 40.000 10.49 3.49 0.00 3.53
642 1538 4.141413 TGTGATTAGATGCATTGCTACCCT 60.141 41.667 10.49 4.39 0.00 4.34
643 1539 4.136796 TGTGATTAGATGCATTGCTACCC 58.863 43.478 10.49 0.00 0.00 3.69
644 1540 5.335426 CCATGTGATTAGATGCATTGCTACC 60.335 44.000 10.49 0.00 0.00 3.18
645 1541 5.471116 TCCATGTGATTAGATGCATTGCTAC 59.529 40.000 10.49 4.04 0.00 3.58
652 1548 2.509131 TGGGTCCATGTGATTAGATGCA 59.491 45.455 0.00 0.00 0.00 3.96
754 1650 7.387948 CAGGTGTACATATAAATGAAGCTACCC 59.612 40.741 0.00 0.00 36.54 3.69
779 1683 2.179427 TCTCCTTGCTAGCTAGTTGCA 58.821 47.619 21.62 12.05 45.94 4.08
782 1686 4.528596 TGAAGTTCTCCTTGCTAGCTAGTT 59.471 41.667 21.62 10.49 32.03 2.24
843 1747 3.054802 AGGCACTAACCAATTGAGAGGAG 60.055 47.826 7.12 0.00 36.02 3.69
882 1786 6.443849 AGGGTGGTTCTAAGAACATCTGAATA 59.556 38.462 0.00 0.00 0.00 1.75
883 1787 5.251700 AGGGTGGTTCTAAGAACATCTGAAT 59.748 40.000 0.00 0.00 0.00 2.57
942 1846 7.814107 GGATAAATTGTGCAACTTCTCATTTCA 59.186 33.333 0.00 0.00 38.04 2.69
988 1893 2.037144 GCTGGCCATTCCTGATGATTT 58.963 47.619 5.51 0.00 38.03 2.17
1165 2070 8.974060 AACTGAAATTAAGGACAGACAGTTAA 57.026 30.769 0.00 0.00 42.68 2.01
1173 2078 9.884465 CTGAAACTTAACTGAAATTAAGGACAG 57.116 33.333 9.43 10.22 43.57 3.51
1258 2163 2.270352 TCACGGCAATCACTTTTCCT 57.730 45.000 0.00 0.00 0.00 3.36
1273 2178 4.271687 CGTTTTCCTGAAGTTTCTTCACG 58.728 43.478 7.92 6.00 0.00 4.35
1435 2340 7.171508 CAGAGTAAACTTTCAGTAATGTCTGCA 59.828 37.037 0.00 0.00 35.63 4.41
1578 2483 7.810282 CCAGATGCATCTAGTTATATATACGCC 59.190 40.741 28.27 0.00 34.85 5.68
1662 2567 2.501723 GACAGACAGGTCCCACACATAT 59.498 50.000 0.00 0.00 0.00 1.78
1764 2670 3.596066 CTGACAGGCAGGTCCCACG 62.596 68.421 0.00 0.00 41.07 4.94
1987 2893 7.250569 CAAACAGTGCATCTCGGTAAAATAAT 58.749 34.615 0.00 0.00 0.00 1.28
2034 2940 0.958822 GATCCAAAACACGGGCACTT 59.041 50.000 0.00 0.00 0.00 3.16
2180 3087 4.593206 GGGGTATCATCACTACTGGAATCA 59.407 45.833 0.00 0.00 0.00 2.57
2202 3109 6.903883 AGCAATTCTAGTAACAACATACGG 57.096 37.500 0.00 0.00 0.00 4.02
2203 3110 6.682863 GCAAGCAATTCTAGTAACAACATACG 59.317 38.462 0.00 0.00 0.00 3.06
2204 3111 7.526608 TGCAAGCAATTCTAGTAACAACATAC 58.473 34.615 0.00 0.00 0.00 2.39
2205 3112 7.680442 TGCAAGCAATTCTAGTAACAACATA 57.320 32.000 0.00 0.00 0.00 2.29
2401 3308 2.193993 GGGGAAAAGCCTACCTCTACA 58.806 52.381 0.00 0.00 36.66 2.74
2432 3339 7.751732 TCACTAACATATTTGTCTCAACATGC 58.248 34.615 0.00 0.00 34.06 4.06
2443 3350 7.621991 GTTCGTGATCCTCACTAACATATTTG 58.378 38.462 15.63 0.00 46.18 2.32
2513 3420 8.630037 ACCAAATCCCGTCAAAATAAGATATTC 58.370 33.333 0.00 0.00 0.00 1.75
2514 3421 8.533569 ACCAAATCCCGTCAAAATAAGATATT 57.466 30.769 0.00 0.00 0.00 1.28
2529 3436 5.337578 AAATTCCATACAACCAAATCCCG 57.662 39.130 0.00 0.00 0.00 5.14
2647 3569 5.401674 CCACTACTTACGTTTCTCTCAACAC 59.598 44.000 0.00 0.00 0.00 3.32
2660 3582 3.259064 CACATCAACCCCACTACTTACG 58.741 50.000 0.00 0.00 0.00 3.18
2676 3598 1.677576 CATATGCACACACCCCACATC 59.322 52.381 0.00 0.00 0.00 3.06
2709 3633 7.743749 ACATGGATGAGAAATGCTACTTAGAT 58.256 34.615 0.00 0.00 0.00 1.98
2803 3727 5.997843 AGTTGAACCCCGCTACTTATATTT 58.002 37.500 0.00 0.00 0.00 1.40
2808 3732 5.425196 AAATAGTTGAACCCCGCTACTTA 57.575 39.130 0.00 0.00 0.00 2.24
2817 3741 9.148104 CCGCTATATACTTAAATAGTTGAACCC 57.852 37.037 0.00 0.00 38.33 4.11
2841 3765 1.202698 CCCCTAGCTCCAAATCTTCCG 60.203 57.143 0.00 0.00 0.00 4.30
2843 3767 3.181453 GGTACCCCTAGCTCCAAATCTTC 60.181 52.174 0.00 0.00 0.00 2.87
2845 3769 2.409570 GGTACCCCTAGCTCCAAATCT 58.590 52.381 0.00 0.00 0.00 2.40
2872 3796 4.141981 ACATGTCAAAACTGCAAACATCCA 60.142 37.500 0.00 0.00 0.00 3.41
2873 3797 4.370917 ACATGTCAAAACTGCAAACATCC 58.629 39.130 0.00 0.00 0.00 3.51
2874 3798 5.042593 TGACATGTCAAAACTGCAAACATC 58.957 37.500 26.02 0.00 36.53 3.06
2875 3799 5.008619 TGACATGTCAAAACTGCAAACAT 57.991 34.783 26.02 0.00 36.53 2.71
2876 3800 4.446994 TGACATGTCAAAACTGCAAACA 57.553 36.364 26.02 0.00 36.53 2.83
2877 3801 5.284079 AGATGACATGTCAAAACTGCAAAC 58.716 37.500 31.00 12.31 43.58 2.93
2878 3802 5.518848 AGATGACATGTCAAAACTGCAAA 57.481 34.783 31.00 5.13 43.58 3.68
2879 3803 6.822667 ATAGATGACATGTCAAAACTGCAA 57.177 33.333 31.00 15.59 43.58 4.08
2880 3804 6.822667 AATAGATGACATGTCAAAACTGCA 57.177 33.333 31.00 16.18 43.58 4.41
2881 3805 7.533426 AGAAATAGATGACATGTCAAAACTGC 58.467 34.615 31.00 17.38 43.58 4.40
2949 3873 4.055710 TGGTCCCTGTACAGAAGTATGA 57.944 45.455 24.68 7.60 31.84 2.15
2981 3905 1.273886 GGTCCAGGTGAAGAGACAGAC 59.726 57.143 0.00 0.00 0.00 3.51
3316 4240 4.705110 TGTACCCACTGGATCCATTATG 57.295 45.455 16.63 13.75 34.81 1.90
3317 4241 4.043310 CCATGTACCCACTGGATCCATTAT 59.957 45.833 16.63 0.61 34.81 1.28
3381 4305 7.386851 TCAGCAAGCCTAAACTATATATGTCC 58.613 38.462 0.00 0.00 0.00 4.02
3443 4367 0.035152 TGCGGATGGCTGATTGTCTT 60.035 50.000 0.00 0.00 44.05 3.01
3621 4545 0.101040 TGCATGCTTTTATCTGCCGC 59.899 50.000 20.33 0.00 33.70 6.53
3946 4873 8.046708 AGTGTATGATGTCCAATAGTTTGCTTA 58.953 33.333 0.00 0.00 0.00 3.09
4033 4960 6.042666 CAGGGTTATCCTCCTTTTTGGAAAAA 59.957 38.462 0.00 0.00 46.12 1.94
4139 5066 7.872483 GGAAAGCAATTTTATCCACTCAGAAAA 59.128 33.333 0.00 0.00 0.00 2.29
4167 5094 4.693566 TCAACTCGTGGTAATTTCACATCC 59.306 41.667 10.75 0.00 35.03 3.51
4194 5121 8.623903 ACACAATGGTATGTATAATTGCAGAAG 58.376 33.333 0.00 0.00 34.13 2.85
4275 5202 9.973661 TCCTTTCATCATCTGGATTACTTTTTA 57.026 29.630 0.00 0.00 32.57 1.52
4281 5208 8.997323 CAGTATTCCTTTCATCATCTGGATTAC 58.003 37.037 0.00 0.00 35.55 1.89
4303 5230 4.204012 CAACAACAAAAGGACTCCCAGTA 58.796 43.478 0.00 0.00 33.88 2.74
4311 5238 3.743396 TGCAACAACAACAACAAAAGGAC 59.257 39.130 0.00 0.00 0.00 3.85
4320 5247 4.583871 AGGGAAAATTGCAACAACAACAA 58.416 34.783 0.00 0.00 31.03 2.83
4321 5248 4.213564 AGGGAAAATTGCAACAACAACA 57.786 36.364 0.00 0.00 31.03 3.33
4322 5249 4.208253 CGTAGGGAAAATTGCAACAACAAC 59.792 41.667 0.00 0.00 31.03 3.32
4443 5370 5.658190 CCAATTCCTATGTTTCCCAACTGAT 59.342 40.000 0.00 0.00 33.58 2.90
4445 5372 5.016173 TCCAATTCCTATGTTTCCCAACTG 58.984 41.667 0.00 0.00 33.58 3.16
4574 5501 8.517323 ACTCAATCTCTATTGGGAATTCCTAT 57.483 34.615 23.63 18.25 45.08 2.57
4575 5502 7.937700 ACTCAATCTCTATTGGGAATTCCTA 57.062 36.000 23.63 15.88 45.08 2.94
4585 5512 9.761504 ATGACATCAACTACTCAATCTCTATTG 57.238 33.333 0.00 0.00 43.32 1.90
4614 5541 8.954950 ATATGATTTCTTTGAGTCTACCACAG 57.045 34.615 0.00 0.00 0.00 3.66
4663 5590 5.577835 TCACATGTCGAAAGAAAAAGGTTG 58.422 37.500 0.00 0.00 45.01 3.77
4702 5629 4.870636 TCTTTTCCCATCCATAGTTGCAT 58.129 39.130 0.00 0.00 0.00 3.96
4749 5676 2.711547 AGTGGAGGTGCCTCTTTTTACT 59.288 45.455 16.80 10.85 42.38 2.24
4848 5775 9.905713 TTGCATTTGAGAGAAATAGGTTAGTAT 57.094 29.630 0.00 0.00 0.00 2.12
5207 7078 6.054295 ACGTCTACTCCTACATACTTACTGG 58.946 44.000 0.00 0.00 0.00 4.00
5208 7079 7.551035 AACGTCTACTCCTACATACTTACTG 57.449 40.000 0.00 0.00 0.00 2.74
5221 7092 5.314923 TGTACCACAATAACGTCTACTCC 57.685 43.478 0.00 0.00 0.00 3.85
5253 7124 7.172342 GGGCCTATGTGGTACATATTTCATTA 58.828 38.462 0.84 0.00 44.52 1.90
5254 7125 6.010219 GGGCCTATGTGGTACATATTTCATT 58.990 40.000 0.84 0.00 44.52 2.57
5255 7126 5.074377 TGGGCCTATGTGGTACATATTTCAT 59.926 40.000 4.53 0.00 44.52 2.57
5256 7127 4.413851 TGGGCCTATGTGGTACATATTTCA 59.586 41.667 4.53 0.00 44.52 2.69
5257 7128 4.980573 TGGGCCTATGTGGTACATATTTC 58.019 43.478 4.53 0.00 44.52 2.17
5258 7129 5.103686 AGTTGGGCCTATGTGGTACATATTT 60.104 40.000 4.53 0.00 44.52 1.40
5259 7130 4.415512 AGTTGGGCCTATGTGGTACATATT 59.584 41.667 4.53 0.00 44.52 1.28
5260 7131 3.980698 AGTTGGGCCTATGTGGTACATAT 59.019 43.478 4.53 0.00 44.52 1.78
5356 7227 1.138036 CATCAATGCGTGTGCCTGG 59.862 57.895 0.00 0.00 41.78 4.45
5359 7230 0.523072 AAGTCATCAATGCGTGTGCC 59.477 50.000 0.00 0.00 41.78 5.01
5390 7261 4.567159 GGTTTCTAGCAAGAGGTTACATCG 59.433 45.833 0.00 0.00 31.96 3.84
5392 7263 4.536489 AGGGTTTCTAGCAAGAGGTTACAT 59.464 41.667 0.00 0.00 31.96 2.29
5473 7344 7.831691 TTTGTCCTTTGGAGTTCATTTGATA 57.168 32.000 0.00 0.00 29.39 2.15
5487 7358 5.473066 AGTCAATGGGAATTTGTCCTTTG 57.527 39.130 12.00 12.00 46.92 2.77
5541 7412 5.420739 TGCAACTTAAGGGTCTCTTTTGTTT 59.579 36.000 7.53 0.00 36.93 2.83
5614 7485 8.125733 AGAGCCCTTGAAGTATGTATCCTATAT 58.874 37.037 0.00 0.00 0.00 0.86
5622 7493 4.324254 CCCAAAGAGCCCTTGAAGTATGTA 60.324 45.833 0.00 0.00 31.91 2.29
5716 7587 7.977853 GCAACTCTATCATTTGAAATCCAACAT 59.022 33.333 0.00 0.00 33.85 2.71
5746 7617 3.941483 ACTGCATGCAAAGTAGACCATAC 59.059 43.478 22.88 0.00 0.00 2.39
5792 7664 9.685276 ATTGTCATATGAACAAAGGAGAATACA 57.315 29.630 18.34 3.39 0.00 2.29
5798 7670 7.596494 ACACAATTGTCATATGAACAAAGGAG 58.404 34.615 8.48 14.86 0.00 3.69
5867 7739 5.105554 TGTGCATTAGAAGTTGTTTGGTTGT 60.106 36.000 0.00 0.00 0.00 3.32
5875 7747 6.886459 ACATAGGAATGTGCATTAGAAGTTGT 59.114 34.615 0.00 0.00 44.79 3.32
5928 7800 2.702478 CAGGGTTGAGATCTCATGCCTA 59.298 50.000 29.95 15.40 39.64 3.93
5984 7856 3.421844 AGTTGATAGCCTTTTGGTGGAC 58.578 45.455 0.00 0.00 42.99 4.02
5986 7858 7.639113 TTTATAGTTGATAGCCTTTTGGTGG 57.361 36.000 0.00 0.00 42.99 4.61
6145 8017 1.768275 TCTTCTTGTGGCCTGAAGTGA 59.232 47.619 19.67 13.75 38.52 3.41
6279 8151 2.168106 TGGAAAACAGTTGCAGCATTGT 59.832 40.909 2.55 1.07 0.00 2.71
6285 8157 6.146021 GGAAATAACATGGAAAACAGTTGCAG 59.854 38.462 0.00 0.00 0.00 4.41
6297 8169 8.531146 GGAAGAAATTCAAGGAAATAACATGGA 58.469 33.333 0.00 0.00 0.00 3.41
6309 8181 7.394816 TCTAGTTGTAGGGAAGAAATTCAAGG 58.605 38.462 0.00 0.00 0.00 3.61
6312 8184 7.918076 ACATCTAGTTGTAGGGAAGAAATTCA 58.082 34.615 4.59 0.00 0.00 2.57
6325 8197 5.295292 GCTCACGTAGGTACATCTAGTTGTA 59.705 44.000 9.19 9.19 0.00 2.41
6327 8199 4.497674 GGCTCACGTAGGTACATCTAGTTG 60.498 50.000 0.00 0.00 0.00 3.16
6350 8222 2.148916 GGTTTTGCCCTTCCTTTTCG 57.851 50.000 0.00 0.00 0.00 3.46
6372 8244 0.400213 CCCTTAGTTGTGTCAGCCCA 59.600 55.000 0.00 0.00 0.00 5.36
6420 8293 5.106594 CCAAGTAAGGGAAAAATGCATTTGC 60.107 40.000 24.74 18.56 42.50 3.68
6434 8307 3.687698 CCGTGTGTAATTCCAAGTAAGGG 59.312 47.826 0.00 0.00 0.00 3.95
6439 8312 2.943036 ACCCGTGTGTAATTCCAAGT 57.057 45.000 0.00 0.00 0.00 3.16
6749 8629 7.847096 TGTTCAAGTAATATCACCTCAAGCTA 58.153 34.615 0.00 0.00 0.00 3.32
6751 8631 6.985188 TGTTCAAGTAATATCACCTCAAGC 57.015 37.500 0.00 0.00 0.00 4.01
6904 8800 8.574251 AAAAGCACACACAAATATAGGTGATA 57.426 30.769 12.22 0.00 38.38 2.15
6919 8816 8.293157 TGATATTTCGTGAATAAAAAGCACACA 58.707 29.630 0.00 0.00 34.06 3.72
7131 9044 2.225727 GAGTGCCCTTTAACCGTTTGAG 59.774 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.