Multiple sequence alignment - TraesCS7B01G460500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G460500 chr7B 100.000 2980 0 0 1 2980 717981600 717984579 0.000000e+00 5504.0
1 TraesCS7B01G460500 chr7B 91.279 1720 135 2 694 2413 717872289 717873993 0.000000e+00 2331.0
2 TraesCS7B01G460500 chr7B 89.388 245 26 0 2736 2980 717874159 717874403 2.880000e-80 309.0
3 TraesCS7B01G460500 chr7B 85.171 263 20 6 142 403 717872003 717872247 4.930000e-63 252.0
4 TraesCS7B01G460500 chr7B 86.713 143 19 0 558 700 717872403 717872545 3.070000e-35 159.0
5 TraesCS7B01G460500 chr7B 84.076 157 23 1 810 966 717982157 717982311 1.850000e-32 150.0
6 TraesCS7B01G460500 chr7B 84.076 157 23 1 558 712 717982409 717982565 1.850000e-32 150.0
7 TraesCS7B01G460500 chr7B 89.320 103 11 0 808 910 717872291 717872393 2.410000e-26 130.0
8 TraesCS7B01G460500 chr7B 87.736 106 13 0 553 658 717872288 717872393 1.120000e-24 124.0
9 TraesCS7B01G460500 chr7A 89.901 1723 160 7 872 2586 717408924 717407208 0.000000e+00 2206.0
10 TraesCS7B01G460500 chr7A 88.148 675 77 1 983 1654 717173348 717172674 0.000000e+00 800.0
11 TraesCS7B01G460500 chr7A 83.835 532 72 9 481 1005 717173886 717173362 7.420000e-136 494.0
12 TraesCS7B01G460500 chr7A 87.143 350 37 5 2242 2586 717365893 717365547 1.000000e-104 390.0
13 TraesCS7B01G460500 chr7A 89.796 294 23 4 2688 2980 717365549 717365262 1.300000e-98 370.0
14 TraesCS7B01G460500 chr7A 87.156 218 26 2 522 739 717409144 717408929 2.290000e-61 246.0
15 TraesCS7B01G460500 chr7A 77.447 235 33 5 481 713 717409045 717408829 4.030000e-24 122.0
16 TraesCS7B01G460500 chr7A 100.000 31 0 0 1676 1706 717172677 717172647 1.150000e-04 58.4
17 TraesCS7B01G460500 chr7D 92.425 1241 90 2 1349 2586 621970751 621969512 0.000000e+00 1768.0
18 TraesCS7B01G460500 chr7D 90.207 1205 98 11 142 1345 621974346 621973161 0.000000e+00 1554.0
19 TraesCS7B01G460500 chr7D 88.061 980 110 3 1611 2586 621863663 621862687 0.000000e+00 1155.0
20 TraesCS7B01G460500 chr7D 89.456 294 29 2 2688 2980 621862689 621862397 1.300000e-98 370.0
21 TraesCS7B01G460500 chr7D 80.916 131 10 3 540 670 621654281 621654166 4.090000e-14 89.8
22 TraesCS7B01G460500 chr7D 97.727 44 1 0 871 914 621654217 621654174 3.190000e-10 76.8
23 TraesCS7B01G460500 chr6A 87.111 225 27 2 1961 2184 95927118 95927341 1.370000e-63 254.0
24 TraesCS7B01G460500 chr6A 95.327 107 4 1 2584 2689 21048388 21048282 5.110000e-38 169.0
25 TraesCS7B01G460500 chr6A 87.500 88 4 6 1 83 14894727 14894812 8.790000e-16 95.3
26 TraesCS7B01G460500 chr2A 87.111 225 27 2 1961 2184 91555982 91556205 1.370000e-63 254.0
27 TraesCS7B01G460500 chr2A 98.131 107 1 1 2584 2689 729983502 729983396 5.070000e-43 185.0
28 TraesCS7B01G460500 chr2A 95.370 108 4 1 2584 2690 450976602 450976709 1.420000e-38 171.0
29 TraesCS7B01G460500 chr4A 96.296 108 3 1 2583 2689 255332118 255332225 3.050000e-40 176.0
30 TraesCS7B01G460500 chr4A 95.413 109 4 1 2584 2691 75203739 75203631 3.950000e-39 172.0
31 TraesCS7B01G460500 chr4A 95.370 108 4 1 2583 2689 40874328 40874221 1.420000e-38 171.0
32 TraesCS7B01G460500 chr4A 92.000 75 2 3 1 73 137281264 137281192 5.260000e-18 102.0
33 TraesCS7B01G460500 chr5A 95.413 109 4 1 2584 2691 612173599 612173491 3.950000e-39 172.0
34 TraesCS7B01G460500 chr5A 95.370 108 4 1 2583 2689 43468985 43469092 1.420000e-38 171.0
35 TraesCS7B01G460500 chr5A 91.011 89 5 3 59 147 458341731 458341816 1.880000e-22 117.0
36 TraesCS7B01G460500 chr5A 94.286 70 1 3 1 69 488053001 488052934 1.460000e-18 104.0
37 TraesCS7B01G460500 chr5A 88.372 86 7 3 1 86 244467771 244467689 1.890000e-17 100.0
38 TraesCS7B01G460500 chr3A 95.370 108 4 1 2583 2689 51697535 51697428 1.420000e-38 171.0
39 TraesCS7B01G460500 chr6B 95.522 67 3 0 1 67 475025252 475025186 1.130000e-19 108.0
40 TraesCS7B01G460500 chr6B 95.522 67 2 1 1 66 18864018 18864084 4.060000e-19 106.0
41 TraesCS7B01G460500 chr1D 93.056 72 2 3 1 71 76989261 76989192 5.260000e-18 102.0
42 TraesCS7B01G460500 chr4B 85.714 98 9 5 1 97 349790333 349790426 6.800000e-17 99.0
43 TraesCS7B01G460500 chr6D 87.500 88 5 6 1 86 183476672 183476589 2.440000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G460500 chr7B 717981600 717984579 2979 False 1934.666667 5504 89.384000 1 2980 3 chr7B.!!$F2 2979
1 TraesCS7B01G460500 chr7B 717872003 717874403 2400 False 550.833333 2331 88.267833 142 2980 6 chr7B.!!$F1 2838
2 TraesCS7B01G460500 chr7A 717407208 717409144 1936 True 858.000000 2206 84.834667 481 2586 3 chr7A.!!$R3 2105
3 TraesCS7B01G460500 chr7A 717172647 717173886 1239 True 450.800000 800 90.661000 481 1706 3 chr7A.!!$R1 1225
4 TraesCS7B01G460500 chr7A 717365262 717365893 631 True 380.000000 390 88.469500 2242 2980 2 chr7A.!!$R2 738
5 TraesCS7B01G460500 chr7D 621969512 621974346 4834 True 1661.000000 1768 91.316000 142 2586 2 chr7D.!!$R3 2444
6 TraesCS7B01G460500 chr7D 621862397 621863663 1266 True 762.500000 1155 88.758500 1611 2980 2 chr7D.!!$R2 1369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 723 0.183492 ACACACACAACCTCAGCCAT 59.817 50.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2689 5156 0.32121 TCCAGCGTACCCAATGTGTG 60.321 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.325509 GCGTGTGCGTAGGAAATTTT 57.674 45.000 0.00 0.00 40.81 1.82
30 31 2.657184 GCGTGTGCGTAGGAAATTTTT 58.343 42.857 0.00 0.00 40.81 1.94
50 51 6.956202 TTTTTGAAATAACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
51 52 6.956202 TTTTGAAATAACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
52 53 5.945466 TTGAAATAACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
53 54 4.970711 TGAAATAACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
54 55 4.998672 TGAAATAACTACGTTCCCCAACAG 59.001 41.667 0.00 0.00 32.14 3.16
55 56 4.628963 AATAACTACGTTCCCCAACAGT 57.371 40.909 0.00 0.00 32.14 3.55
56 57 5.743636 AATAACTACGTTCCCCAACAGTA 57.256 39.130 0.00 0.00 32.14 2.74
57 58 5.945144 ATAACTACGTTCCCCAACAGTAT 57.055 39.130 0.00 0.00 32.14 2.12
58 59 7.422465 AATAACTACGTTCCCCAACAGTATA 57.578 36.000 0.00 0.00 32.14 1.47
59 60 5.945144 AACTACGTTCCCCAACAGTATAT 57.055 39.130 0.00 0.00 32.14 0.86
60 61 8.710749 ATAACTACGTTCCCCAACAGTATATA 57.289 34.615 0.00 0.00 32.14 0.86
61 62 7.607615 AACTACGTTCCCCAACAGTATATAT 57.392 36.000 0.00 0.00 32.14 0.86
62 63 8.710749 AACTACGTTCCCCAACAGTATATATA 57.289 34.615 0.00 0.00 32.14 0.86
63 64 8.890410 ACTACGTTCCCCAACAGTATATATAT 57.110 34.615 0.00 0.00 32.14 0.86
64 65 9.979897 ACTACGTTCCCCAACAGTATATATATA 57.020 33.333 0.00 0.00 32.14 0.86
66 67 8.654485 ACGTTCCCCAACAGTATATATATACA 57.346 34.615 27.07 8.00 40.70 2.29
67 68 9.263446 ACGTTCCCCAACAGTATATATATACAT 57.737 33.333 27.07 16.07 40.70 2.29
116 117 9.647797 ACGACAAGTATATGTCTTACATGAAAA 57.352 29.630 0.00 0.00 45.98 2.29
117 118 9.901724 CGACAAGTATATGTCTTACATGAAAAC 57.098 33.333 0.00 0.00 45.98 2.43
158 159 6.561737 TTTAAGATGTGGCGTTTTCATACA 57.438 33.333 0.00 0.00 0.00 2.29
172 173 8.272176 GCGTTTTCATACAAAATTTGATGACAA 58.728 29.630 13.19 12.24 31.61 3.18
205 206 9.647797 TGCTCTAATTTCGTGATAACTAAGAAA 57.352 29.630 0.00 0.00 35.64 2.52
223 224 8.902806 ACTAAGAAATGACACAAATGACAGAAA 58.097 29.630 0.00 0.00 33.97 2.52
257 258 3.827302 ACAGAAGACAAGATGTAGGACGT 59.173 43.478 0.00 0.00 0.00 4.34
276 277 5.163982 GGACGTAGCTGACAATAGACAAAAC 60.164 44.000 0.00 0.00 0.00 2.43
280 281 3.428870 AGCTGACAATAGACAAAACGACG 59.571 43.478 0.00 0.00 0.00 5.12
340 342 9.023962 AGAAACAACATTTGAATAGATGGCTTA 57.976 29.630 0.00 0.00 0.00 3.09
416 418 1.133792 CCGGTGGCTTCCCATAAATCT 60.134 52.381 0.00 0.00 44.51 2.40
438 440 8.776061 ATCTAAGCTAAGTGTCTATTCCTTCT 57.224 34.615 0.00 0.00 0.00 2.85
451 453 9.475620 TGTCTATTCCTTCTGATTAAGTGTCTA 57.524 33.333 0.00 0.00 0.00 2.59
476 478 5.988561 GTCATTCCGATCAGAGCTCTAATTT 59.011 40.000 17.75 0.92 0.00 1.82
550 552 2.497273 GCAATTTACCCTGCTCAACCAT 59.503 45.455 0.00 0.00 35.62 3.55
662 664 3.782523 AGATAAGACCATGGACACCACAT 59.217 43.478 21.47 2.36 35.80 3.21
664 666 5.608437 AGATAAGACCATGGACACCACATAT 59.392 40.000 21.47 5.68 35.80 1.78
673 675 3.136763 GGACACCACATATCTCTGCATG 58.863 50.000 0.00 0.00 0.00 4.06
674 676 2.547211 GACACCACATATCTCTGCATGC 59.453 50.000 11.82 11.82 0.00 4.06
692 694 1.347707 TGCTACTCTGTTCAACCAGGG 59.652 52.381 0.00 0.00 38.96 4.45
709 711 3.070018 CAGGGAAAGAGATCACACACAC 58.930 50.000 0.00 0.00 0.00 3.82
710 712 2.705658 AGGGAAAGAGATCACACACACA 59.294 45.455 0.00 0.00 0.00 3.72
721 723 0.183492 ACACACACAACCTCAGCCAT 59.817 50.000 0.00 0.00 0.00 4.40
722 724 0.594602 CACACACAACCTCAGCCATG 59.405 55.000 0.00 0.00 0.00 3.66
736 738 7.227156 ACCTCAGCCATGTATAATAGGAAAAG 58.773 38.462 0.00 0.00 0.00 2.27
800 802 2.481441 AGAGATAAGACCATGGGCACA 58.519 47.619 22.78 7.04 0.00 4.57
805 807 0.251341 AAGACCATGGGCACAAGGAC 60.251 55.000 22.78 11.39 37.67 3.85
819 821 0.600557 AAGGACGAGAGAGCACACAG 59.399 55.000 0.00 0.00 0.00 3.66
823 825 1.268352 GACGAGAGAGCACACAGAACT 59.732 52.381 0.00 0.00 0.00 3.01
919 921 0.675837 CCATGGACACCACAGAGCTG 60.676 60.000 5.56 0.00 35.80 4.24
966 970 3.386768 AAGAGAGCACACGTACACAAT 57.613 42.857 0.00 0.00 0.00 2.71
968 972 4.514781 AGAGAGCACACGTACACAATTA 57.485 40.909 0.00 0.00 0.00 1.40
1269 1312 2.353257 GCATCGACGACTTTATGCAC 57.647 50.000 13.89 0.00 43.30 4.57
1359 3808 0.669318 TGAGGACGCGTCACCAATTC 60.669 55.000 37.26 23.17 0.00 2.17
1365 3814 1.442017 GCGTCACCAATTCGCCAAC 60.442 57.895 0.00 0.00 43.41 3.77
1374 3823 2.609350 CAATTCGCCAACCAAATCCAG 58.391 47.619 0.00 0.00 0.00 3.86
1386 3835 1.129998 CAAATCCAGCAGCTGAAGACG 59.870 52.381 24.90 6.63 32.44 4.18
1404 3853 0.798776 CGTGGGTCAAAGATGTGAGC 59.201 55.000 0.00 0.00 43.73 4.26
1407 3856 1.071542 TGGGTCAAAGATGTGAGCGAA 59.928 47.619 0.00 0.00 45.07 4.70
1428 3877 3.778618 ACGTCGGAAAAGGTATAAGCTC 58.221 45.455 0.00 0.00 0.00 4.09
1429 3878 3.194116 ACGTCGGAAAAGGTATAAGCTCA 59.806 43.478 0.00 0.00 0.00 4.26
1441 3890 3.641434 ATAAGCTCAATGAGTGTGCCT 57.359 42.857 12.29 0.00 45.92 4.75
1470 3919 7.999545 AGTTCTAGCTATGTAGTTGTAGATCCA 59.000 37.037 0.00 0.00 0.00 3.41
1628 4080 2.158579 GGGGTCTAGGAAAAACCACACA 60.159 50.000 0.46 0.00 42.04 3.72
1673 4129 1.134007 TGGAGGGCAATATGACTGCAG 60.134 52.381 13.48 13.48 41.78 4.41
1706 4162 6.480320 GTGTCCATATCACAAAGACCTGATAC 59.520 42.308 0.00 0.00 33.25 2.24
1720 4176 3.957497 ACCTGATACGATGAAGCTTCTCT 59.043 43.478 26.09 14.14 0.00 3.10
1728 4184 4.202101 ACGATGAAGCTTCTCTGTAGGATG 60.202 45.833 26.09 8.99 0.00 3.51
1750 4206 6.258230 TGATCACAAAACTTAAGATGCCAG 57.742 37.500 10.09 0.00 0.00 4.85
1761 4217 0.251341 AGATGCCAGAACCAACCCAC 60.251 55.000 0.00 0.00 0.00 4.61
1764 4220 2.200337 GCCAGAACCAACCCACACC 61.200 63.158 0.00 0.00 0.00 4.16
1790 4246 5.039984 CGAGGTACAAGATCTCATTGACAG 58.960 45.833 0.00 0.00 0.00 3.51
1804 4260 8.186709 TCTCATTGACAGCATCAGAGAATATA 57.813 34.615 7.21 0.00 36.30 0.86
1844 4300 5.010282 ACTTTAGTAACTTGGCAATCCCTG 58.990 41.667 0.00 0.00 0.00 4.45
1875 4331 5.629435 GCATAGTTGCTTTGAGGTTTTACAC 59.371 40.000 0.00 0.00 45.77 2.90
1876 4332 6.734137 CATAGTTGCTTTGAGGTTTTACACA 58.266 36.000 0.00 0.00 0.00 3.72
1897 4353 1.272985 CCCCAATTTGCCCCTTCTACA 60.273 52.381 0.00 0.00 0.00 2.74
2109 4573 0.739462 CCTGCAACTATCGGCGTGAA 60.739 55.000 6.85 0.00 0.00 3.18
2271 4735 8.669243 GCTATTGTCAGTATTGCTAGTCTTTTT 58.331 33.333 0.00 0.00 0.00 1.94
2275 4739 4.391830 TCAGTATTGCTAGTCTTTTTGCCG 59.608 41.667 0.00 0.00 0.00 5.69
2296 4763 3.306088 CGGTCAACCAACTAGATCAGTGT 60.306 47.826 0.00 0.00 37.63 3.55
2409 4876 4.248859 ACAACAATCTTCCTCATCGTCTG 58.751 43.478 0.00 0.00 0.00 3.51
2422 4889 5.220854 CCTCATCGTCTGAAAACTTGTTTGT 60.221 40.000 0.00 0.00 32.14 2.83
2424 4891 6.027131 TCATCGTCTGAAAACTTGTTTGTTG 58.973 36.000 0.00 0.00 0.00 3.33
2458 4925 7.391554 CCATGTACCCAGAGGATTACATTATTG 59.608 40.741 7.25 1.18 32.87 1.90
2503 4970 0.804989 GGTGGCTGAAGGTTTCATCG 59.195 55.000 0.00 0.00 39.30 3.84
2518 4985 2.373224 TCATCGGCAAAATACATGGCA 58.627 42.857 0.00 0.00 43.00 4.92
2567 5034 8.059798 AGTTGCTTTAATGAGCTTGTCAATAT 57.940 30.769 1.10 0.00 43.11 1.28
2570 5037 8.054152 TGCTTTAATGAGCTTGTCAATATGAA 57.946 30.769 1.10 0.00 43.11 2.57
2586 5053 7.716998 GTCAATATGAACATGATCCAACCTACT 59.283 37.037 0.00 0.00 0.00 2.57
2587 5054 7.933577 TCAATATGAACATGATCCAACCTACTC 59.066 37.037 0.00 0.00 0.00 2.59
2588 5055 4.487714 TGAACATGATCCAACCTACTCC 57.512 45.455 0.00 0.00 0.00 3.85
2589 5056 3.199946 TGAACATGATCCAACCTACTCCC 59.800 47.826 0.00 0.00 0.00 4.30
2590 5057 3.136641 ACATGATCCAACCTACTCCCT 57.863 47.619 0.00 0.00 0.00 4.20
2591 5058 3.041946 ACATGATCCAACCTACTCCCTC 58.958 50.000 0.00 0.00 0.00 4.30
2592 5059 2.176247 TGATCCAACCTACTCCCTCC 57.824 55.000 0.00 0.00 0.00 4.30
2593 5060 1.041437 GATCCAACCTACTCCCTCCG 58.959 60.000 0.00 0.00 0.00 4.63
2594 5061 0.338814 ATCCAACCTACTCCCTCCGT 59.661 55.000 0.00 0.00 0.00 4.69
2595 5062 0.115745 TCCAACCTACTCCCTCCGTT 59.884 55.000 0.00 0.00 0.00 4.44
2596 5063 0.535797 CCAACCTACTCCCTCCGTTC 59.464 60.000 0.00 0.00 0.00 3.95
2597 5064 0.172803 CAACCTACTCCCTCCGTTCG 59.827 60.000 0.00 0.00 0.00 3.95
2598 5065 0.969409 AACCTACTCCCTCCGTTCGG 60.969 60.000 4.74 4.74 0.00 4.30
2599 5066 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
2600 5067 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
2601 5068 1.180029 CTACTCCCTCCGTTCGGAAA 58.820 55.000 14.79 3.49 33.41 3.13
2602 5069 1.755380 CTACTCCCTCCGTTCGGAAAT 59.245 52.381 14.79 2.39 33.41 2.17
2603 5070 0.981943 ACTCCCTCCGTTCGGAAATT 59.018 50.000 14.79 0.00 33.41 1.82
2604 5071 1.066358 ACTCCCTCCGTTCGGAAATTC 60.066 52.381 14.79 0.00 33.41 2.17
2605 5072 1.207329 CTCCCTCCGTTCGGAAATTCT 59.793 52.381 14.79 0.00 33.41 2.40
2606 5073 1.626825 TCCCTCCGTTCGGAAATTCTT 59.373 47.619 14.79 0.00 33.41 2.52
2607 5074 1.737793 CCCTCCGTTCGGAAATTCTTG 59.262 52.381 14.79 1.97 33.41 3.02
2608 5075 2.423577 CCTCCGTTCGGAAATTCTTGT 58.576 47.619 14.79 0.00 33.41 3.16
2609 5076 2.415512 CCTCCGTTCGGAAATTCTTGTC 59.584 50.000 14.79 0.00 33.41 3.18
2610 5077 3.326747 CTCCGTTCGGAAATTCTTGTCT 58.673 45.455 14.79 0.00 33.41 3.41
2611 5078 3.735591 TCCGTTCGGAAATTCTTGTCTT 58.264 40.909 11.66 0.00 0.00 3.01
2612 5079 4.885413 TCCGTTCGGAAATTCTTGTCTTA 58.115 39.130 11.66 0.00 0.00 2.10
2613 5080 4.927425 TCCGTTCGGAAATTCTTGTCTTAG 59.073 41.667 11.66 0.00 0.00 2.18
2614 5081 4.927425 CCGTTCGGAAATTCTTGTCTTAGA 59.073 41.667 5.19 0.00 0.00 2.10
2615 5082 5.407387 CCGTTCGGAAATTCTTGTCTTAGAA 59.593 40.000 5.19 0.00 38.43 2.10
2616 5083 6.073440 CCGTTCGGAAATTCTTGTCTTAGAAA 60.073 38.462 5.19 0.00 37.66 2.52
2617 5084 7.360946 CCGTTCGGAAATTCTTGTCTTAGAAAT 60.361 37.037 5.19 0.00 37.66 2.17
2618 5085 7.478667 CGTTCGGAAATTCTTGTCTTAGAAATG 59.521 37.037 0.00 0.00 37.66 2.32
2619 5086 7.377766 TCGGAAATTCTTGTCTTAGAAATGG 57.622 36.000 0.00 0.00 37.66 3.16
2620 5087 6.940298 TCGGAAATTCTTGTCTTAGAAATGGT 59.060 34.615 0.00 0.00 37.66 3.55
2621 5088 7.447238 TCGGAAATTCTTGTCTTAGAAATGGTT 59.553 33.333 0.00 0.00 37.66 3.67
2622 5089 7.538678 CGGAAATTCTTGTCTTAGAAATGGTTG 59.461 37.037 0.00 0.00 37.66 3.77
2623 5090 8.360390 GGAAATTCTTGTCTTAGAAATGGTTGT 58.640 33.333 0.00 0.00 37.66 3.32
2627 5094 9.965902 ATTCTTGTCTTAGAAATGGTTGTATCT 57.034 29.630 0.00 0.00 37.66 1.98
2632 5099 9.871238 TGTCTTAGAAATGGTTGTATCTAGAAC 57.129 33.333 0.00 0.00 0.00 3.01
2643 5110 9.485206 TGGTTGTATCTAGAACTAAAACAAGTC 57.515 33.333 0.00 0.00 30.96 3.01
2644 5111 9.708092 GGTTGTATCTAGAACTAAAACAAGTCT 57.292 33.333 0.00 0.00 30.96 3.24
2654 5121 9.708092 AGAACTAAAACAAGTCTAGATACAACC 57.292 33.333 0.00 0.00 0.00 3.77
2655 5122 9.485206 GAACTAAAACAAGTCTAGATACAACCA 57.515 33.333 0.00 0.00 0.00 3.67
2675 5142 8.079809 ACAACCATTTTAAGACAAGTATTTCCG 58.920 33.333 0.00 0.00 0.00 4.30
2676 5143 7.989416 ACCATTTTAAGACAAGTATTTCCGA 57.011 32.000 0.00 0.00 0.00 4.55
2677 5144 8.398878 ACCATTTTAAGACAAGTATTTCCGAA 57.601 30.769 0.00 0.00 0.00 4.30
2678 5145 8.294577 ACCATTTTAAGACAAGTATTTCCGAAC 58.705 33.333 0.00 0.00 0.00 3.95
2679 5146 8.293867 CCATTTTAAGACAAGTATTTCCGAACA 58.706 33.333 0.00 0.00 0.00 3.18
2680 5147 9.329913 CATTTTAAGACAAGTATTTCCGAACAG 57.670 33.333 0.00 0.00 0.00 3.16
2681 5148 8.665643 TTTTAAGACAAGTATTTCCGAACAGA 57.334 30.769 0.00 0.00 0.00 3.41
2682 5149 7.884816 TTAAGACAAGTATTTCCGAACAGAG 57.115 36.000 0.00 0.00 0.00 3.35
2683 5150 4.822026 AGACAAGTATTTCCGAACAGAGG 58.178 43.478 0.00 0.00 0.00 3.69
2684 5151 3.933332 GACAAGTATTTCCGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2685 5152 3.581332 ACAAGTATTTCCGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2686 5153 4.184629 CAAGTATTTCCGAACAGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
2687 5154 3.442076 AGTATTTCCGAACAGAGGGAGT 58.558 45.455 0.00 0.00 33.01 3.85
2688 5155 4.607239 AGTATTTCCGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 33.01 2.59
2689 5156 3.889520 ATTTCCGAACAGAGGGAGTAC 57.110 47.619 0.00 0.00 33.01 2.73
2693 5160 1.067776 CCGAACAGAGGGAGTACACAC 60.068 57.143 0.00 0.00 0.00 3.82
2697 5164 3.685139 ACAGAGGGAGTACACACATTG 57.315 47.619 0.00 0.00 0.00 2.82
2717 5184 1.108776 GGTACGCTGGACAGGTCATA 58.891 55.000 1.01 0.00 0.00 2.15
2719 5186 0.744874 TACGCTGGACAGGTCATAGC 59.255 55.000 14.26 14.26 37.71 2.97
2744 5211 9.823098 GCATGTAAAGTTCATGATATGATTCTC 57.177 33.333 8.37 0.00 43.47 2.87
2761 5228 7.757941 TGATTCTCGATCTAATCAGACTCAT 57.242 36.000 11.73 0.00 37.23 2.90
2796 5263 8.880991 AGAGAAGTTTCTTAGTGTGGTAGATA 57.119 34.615 0.00 0.00 37.73 1.98
2798 5265 9.356433 GAGAAGTTTCTTAGTGTGGTAGATAAC 57.644 37.037 0.00 0.00 37.73 1.89
2830 5297 1.600013 GATCTCAGCATTGCAGAGCAG 59.400 52.381 22.26 6.83 41.03 4.24
2843 5310 0.108615 AGAGCAGGGTTCGTCGAATG 60.109 55.000 11.45 6.82 0.00 2.67
2867 5334 2.026449 CCTTCAGTTGGATTCTGGAGCT 60.026 50.000 0.00 0.00 37.25 4.09
2883 5350 3.198872 GGAGCTAATGAAGGCACAGTAC 58.801 50.000 0.00 0.00 0.00 2.73
2945 5412 3.691049 TTTGGCAAGTCTCGTTTCAAG 57.309 42.857 0.00 0.00 0.00 3.02
2948 5415 2.612212 TGGCAAGTCTCGTTTCAAGTTC 59.388 45.455 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
1 2 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
5 6 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
6 7 0.249531 TTTCCTACGCACACGCAAGA 60.250 50.000 0.00 0.00 45.53 3.02
7 8 0.796312 ATTTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
8 9 1.231221 AATTTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
9 10 1.231221 AAATTTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
10 11 2.325509 AAAATTTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
40 41 9.752228 TGTATATATATACTGTTGGGGAACGTA 57.248 33.333 25.95 5.45 39.36 3.57
41 42 8.654485 TGTATATATATACTGTTGGGGAACGT 57.346 34.615 25.95 0.00 39.36 3.99
133 134 7.426410 TGTATGAAAACGCCACATCTTAAAAA 58.574 30.769 0.00 0.00 0.00 1.94
134 135 6.971602 TGTATGAAAACGCCACATCTTAAAA 58.028 32.000 0.00 0.00 0.00 1.52
135 136 6.561737 TGTATGAAAACGCCACATCTTAAA 57.438 33.333 0.00 0.00 0.00 1.52
136 137 6.561737 TTGTATGAAAACGCCACATCTTAA 57.438 33.333 0.00 0.00 0.00 1.85
137 138 6.561737 TTTGTATGAAAACGCCACATCTTA 57.438 33.333 0.00 0.00 0.00 2.10
138 139 5.446143 TTTGTATGAAAACGCCACATCTT 57.554 34.783 0.00 0.00 0.00 2.40
139 140 5.446143 TTTTGTATGAAAACGCCACATCT 57.554 34.783 0.00 0.00 0.00 2.90
140 141 6.704512 AATTTTGTATGAAAACGCCACATC 57.295 33.333 0.00 0.00 0.00 3.06
158 159 7.174253 AGAGCAAATGCATTGTCATCAAATTTT 59.826 29.630 13.82 0.00 45.16 1.82
172 173 5.565592 TCACGAAATTAGAGCAAATGCAT 57.434 34.783 8.28 0.00 45.16 3.96
179 180 9.647797 TTTCTTAGTTATCACGAAATTAGAGCA 57.352 29.630 0.00 0.00 0.00 4.26
234 235 4.281182 ACGTCCTACATCTTGTCTTCTGTT 59.719 41.667 0.00 0.00 0.00 3.16
246 247 3.777465 TTGTCAGCTACGTCCTACATC 57.223 47.619 0.00 0.00 0.00 3.06
251 252 3.353557 TGTCTATTGTCAGCTACGTCCT 58.646 45.455 0.00 0.00 0.00 3.85
252 253 3.777465 TGTCTATTGTCAGCTACGTCC 57.223 47.619 0.00 0.00 0.00 4.79
257 258 4.619760 CGTCGTTTTGTCTATTGTCAGCTA 59.380 41.667 0.00 0.00 0.00 3.32
276 277 4.446385 TCTCACTGTTGTTTATTTCCGTCG 59.554 41.667 0.00 0.00 0.00 5.12
280 281 5.768164 TCCCTTCTCACTGTTGTTTATTTCC 59.232 40.000 0.00 0.00 0.00 3.13
340 342 6.127591 TGTTGCATTTTTGGTAGTACAAGTGT 60.128 34.615 2.06 0.00 0.00 3.55
405 407 7.676683 AGACACTTAGCTTAGATTTATGGGA 57.323 36.000 6.76 0.00 0.00 4.37
411 413 9.825109 GAAGGAATAGACACTTAGCTTAGATTT 57.175 33.333 6.76 0.00 0.00 2.17
416 418 7.956328 TCAGAAGGAATAGACACTTAGCTTA 57.044 36.000 0.00 0.00 0.00 3.09
438 440 6.769134 TCGGAATGACTAGACACTTAATCA 57.231 37.500 0.00 0.00 0.00 2.57
451 453 2.665165 AGAGCTCTGATCGGAATGACT 58.335 47.619 17.42 0.97 0.00 3.41
538 540 4.201990 GCTCTATTTTCATGGTTGAGCAGG 60.202 45.833 14.42 0.00 43.18 4.85
550 552 2.225491 GGTTGCGTGTGCTCTATTTTCA 59.775 45.455 0.00 0.00 43.34 2.69
662 664 4.646492 TGAACAGAGTAGCATGCAGAGATA 59.354 41.667 21.98 0.00 0.00 1.98
664 666 2.827921 TGAACAGAGTAGCATGCAGAGA 59.172 45.455 21.98 0.00 0.00 3.10
673 675 1.623811 TCCCTGGTTGAACAGAGTAGC 59.376 52.381 0.00 0.00 40.97 3.58
674 676 4.040461 TCTTTCCCTGGTTGAACAGAGTAG 59.960 45.833 0.00 0.00 40.97 2.57
692 694 4.130118 AGGTTGTGTGTGTGATCTCTTTC 58.870 43.478 0.00 0.00 0.00 2.62
709 711 6.114187 TCCTATTATACATGGCTGAGGTTG 57.886 41.667 0.00 0.00 0.00 3.77
710 712 6.763715 TTCCTATTATACATGGCTGAGGTT 57.236 37.500 0.00 0.00 0.00 3.50
800 802 0.600557 CTGTGTGCTCTCTCGTCCTT 59.399 55.000 0.00 0.00 0.00 3.36
805 807 2.030363 AGAAGTTCTGTGTGCTCTCTCG 60.030 50.000 4.10 0.00 0.00 4.04
819 821 5.828747 TCGTACTATATGTGGCAGAAGTTC 58.171 41.667 0.00 0.00 0.00 3.01
823 825 6.399743 TGTTTTCGTACTATATGTGGCAGAA 58.600 36.000 0.00 0.00 0.00 3.02
867 869 0.883833 AGTGCAGAAAATTCAGCGGG 59.116 50.000 6.13 0.00 41.91 6.13
966 970 4.354087 AGCTTCCTTCCTCTTTTCCCTTAA 59.646 41.667 0.00 0.00 0.00 1.85
968 972 2.719157 AGCTTCCTTCCTCTTTTCCCTT 59.281 45.455 0.00 0.00 0.00 3.95
1152 1195 2.208132 TCTCGAGCTTCTTGAGGACT 57.792 50.000 7.81 0.00 41.14 3.85
1359 3808 1.213537 CTGCTGGATTTGGTTGGCG 59.786 57.895 0.00 0.00 0.00 5.69
1365 3814 1.471684 GTCTTCAGCTGCTGGATTTGG 59.528 52.381 27.79 9.08 31.51 3.28
1374 3823 2.029844 GACCCACGTCTTCAGCTGC 61.030 63.158 9.47 0.00 35.99 5.25
1386 3835 0.798776 CGCTCACATCTTTGACCCAC 59.201 55.000 0.00 0.00 0.00 4.61
1404 3853 3.000376 GCTTATACCTTTTCCGACGTTCG 60.000 47.826 0.00 0.00 40.07 3.95
1407 3856 3.194116 TGAGCTTATACCTTTTCCGACGT 59.806 43.478 0.00 0.00 0.00 4.34
1533 3982 2.161609 GGCCGTCAACAACTTGATAAGG 59.838 50.000 0.00 0.00 38.69 2.69
1567 4019 1.480137 CACTCTAAGAGGCTGGACAGG 59.520 57.143 0.00 0.00 33.35 4.00
1628 4080 6.066690 AGCTCATGGTATACTTGATTTGCAT 58.933 36.000 2.25 0.00 33.37 3.96
1673 4129 3.340034 TGTGATATGGACACGAAAACCC 58.660 45.455 0.00 0.00 40.61 4.11
1706 4162 4.037327 TCATCCTACAGAGAAGCTTCATCG 59.963 45.833 27.57 16.62 0.00 3.84
1720 4176 9.166173 CATCTTAAGTTTTGTGATCATCCTACA 57.834 33.333 0.00 0.00 0.00 2.74
1728 4184 6.500684 TCTGGCATCTTAAGTTTTGTGATC 57.499 37.500 1.63 0.00 0.00 2.92
1750 4206 2.248835 CGTCGGTGTGGGTTGGTTC 61.249 63.158 0.00 0.00 0.00 3.62
1764 4220 3.972950 ATGAGATCTTGTACCTCGTCG 57.027 47.619 0.00 0.00 0.00 5.12
1772 4228 5.981174 TGATGCTGTCAATGAGATCTTGTA 58.019 37.500 0.00 0.00 32.78 2.41
1773 4229 4.840271 TGATGCTGTCAATGAGATCTTGT 58.160 39.130 0.00 0.00 32.78 3.16
1834 4290 1.473258 TGCATACAACAGGGATTGCC 58.527 50.000 0.00 0.00 32.47 4.52
1875 4331 0.545071 AGAAGGGGCAAATTGGGGTG 60.545 55.000 0.00 0.00 0.00 4.61
1876 4332 1.089123 TAGAAGGGGCAAATTGGGGT 58.911 50.000 0.00 0.00 0.00 4.95
2049 4513 4.693566 TCAATTCTCGTGGTTGTGATTACC 59.306 41.667 0.00 0.00 36.17 2.85
2109 4573 8.503458 CAAGAGGACTCATCTTGTAAATGAAT 57.497 34.615 20.59 0.00 45.58 2.57
2271 4735 0.981183 ATCTAGTTGGTTGACCGGCA 59.019 50.000 0.00 0.00 39.43 5.69
2275 4739 4.246458 GACACTGATCTAGTTGGTTGACC 58.754 47.826 0.00 0.00 37.60 4.02
2351 4818 1.457346 CTGTCTCATGCCCTCCAAAC 58.543 55.000 0.00 0.00 0.00 2.93
2409 4876 8.359060 TGGCAATATACAACAAACAAGTTTTC 57.641 30.769 0.00 0.00 0.00 2.29
2422 4889 5.456042 CCTCTGGGTACATGGCAATATACAA 60.456 44.000 0.00 0.00 0.00 2.41
2424 4891 4.286032 TCCTCTGGGTACATGGCAATATAC 59.714 45.833 0.00 0.00 0.00 1.47
2458 4925 3.194116 TGCCTTCCAAGATCATTCTTTGC 59.806 43.478 0.00 0.00 40.28 3.68
2474 4941 0.899717 TTCAGCCACCCATTGCCTTC 60.900 55.000 0.00 0.00 0.00 3.46
2503 4970 3.460103 CATCCTTGCCATGTATTTTGCC 58.540 45.455 0.00 0.00 0.00 4.52
2518 4985 1.098050 GCGACCTCATTTGCATCCTT 58.902 50.000 0.00 0.00 0.00 3.36
2567 5034 3.199946 GGGAGTAGGTTGGATCATGTTCA 59.800 47.826 6.14 0.00 0.00 3.18
2570 5037 3.041946 GAGGGAGTAGGTTGGATCATGT 58.958 50.000 0.00 0.00 0.00 3.21
2586 5053 1.272807 AGAATTTCCGAACGGAGGGA 58.727 50.000 15.34 7.17 46.06 4.20
2587 5054 1.737793 CAAGAATTTCCGAACGGAGGG 59.262 52.381 15.34 0.00 46.06 4.30
2588 5055 2.415512 GACAAGAATTTCCGAACGGAGG 59.584 50.000 15.34 4.52 46.06 4.30
2589 5056 3.326747 AGACAAGAATTTCCGAACGGAG 58.673 45.455 15.34 5.60 46.06 4.63
2590 5057 3.396260 AGACAAGAATTTCCGAACGGA 57.604 42.857 12.04 12.04 43.52 4.69
2591 5058 4.927425 TCTAAGACAAGAATTTCCGAACGG 59.073 41.667 6.94 6.94 0.00 4.44
2592 5059 6.462073 TTCTAAGACAAGAATTTCCGAACG 57.538 37.500 0.00 0.00 30.54 3.95
2593 5060 7.750903 CCATTTCTAAGACAAGAATTTCCGAAC 59.249 37.037 0.00 0.00 35.48 3.95
2594 5061 7.447238 ACCATTTCTAAGACAAGAATTTCCGAA 59.553 33.333 0.00 0.00 35.48 4.30
2595 5062 6.940298 ACCATTTCTAAGACAAGAATTTCCGA 59.060 34.615 0.00 0.00 35.48 4.55
2596 5063 7.145932 ACCATTTCTAAGACAAGAATTTCCG 57.854 36.000 0.00 0.00 35.48 4.30
2597 5064 8.360390 ACAACCATTTCTAAGACAAGAATTTCC 58.640 33.333 0.00 0.00 35.48 3.13
2601 5068 9.965902 AGATACAACCATTTCTAAGACAAGAAT 57.034 29.630 0.00 0.00 35.48 2.40
2606 5073 9.871238 GTTCTAGATACAACCATTTCTAAGACA 57.129 33.333 0.00 0.00 0.00 3.41
2617 5084 9.485206 GACTTGTTTTAGTTCTAGATACAACCA 57.515 33.333 0.00 0.00 0.00 3.67
2618 5085 9.708092 AGACTTGTTTTAGTTCTAGATACAACC 57.292 33.333 0.00 0.00 0.00 3.77
2628 5095 9.708092 GGTTGTATCTAGACTTGTTTTAGTTCT 57.292 33.333 0.00 0.00 0.00 3.01
2629 5096 9.485206 TGGTTGTATCTAGACTTGTTTTAGTTC 57.515 33.333 0.00 0.00 0.00 3.01
2649 5116 8.079809 CGGAAATACTTGTCTTAAAATGGTTGT 58.920 33.333 0.00 0.00 0.00 3.32
2650 5117 8.293867 TCGGAAATACTTGTCTTAAAATGGTTG 58.706 33.333 0.00 0.00 0.00 3.77
2651 5118 8.398878 TCGGAAATACTTGTCTTAAAATGGTT 57.601 30.769 0.00 0.00 0.00 3.67
2652 5119 7.989416 TCGGAAATACTTGTCTTAAAATGGT 57.011 32.000 0.00 0.00 0.00 3.55
2653 5120 8.293867 TGTTCGGAAATACTTGTCTTAAAATGG 58.706 33.333 0.00 0.00 0.00 3.16
2654 5121 9.329913 CTGTTCGGAAATACTTGTCTTAAAATG 57.670 33.333 0.00 0.00 0.00 2.32
2655 5122 9.280174 TCTGTTCGGAAATACTTGTCTTAAAAT 57.720 29.630 0.00 0.00 0.00 1.82
2656 5123 8.665643 TCTGTTCGGAAATACTTGTCTTAAAA 57.334 30.769 0.00 0.00 0.00 1.52
2657 5124 7.386848 CCTCTGTTCGGAAATACTTGTCTTAAA 59.613 37.037 0.00 0.00 0.00 1.52
2658 5125 6.872020 CCTCTGTTCGGAAATACTTGTCTTAA 59.128 38.462 0.00 0.00 0.00 1.85
2659 5126 6.395629 CCTCTGTTCGGAAATACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
2660 5127 5.238583 CCTCTGTTCGGAAATACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
2661 5128 4.322801 CCCTCTGTTCGGAAATACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
2662 5129 3.933332 CCCTCTGTTCGGAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2663 5130 3.581332 TCCCTCTGTTCGGAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2664 5131 4.184629 CTCCCTCTGTTCGGAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2665 5132 3.838903 ACTCCCTCTGTTCGGAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
2666 5133 3.442076 ACTCCCTCTGTTCGGAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
2667 5134 3.889520 ACTCCCTCTGTTCGGAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
2668 5135 4.159135 GTGTACTCCCTCTGTTCGGAAATA 59.841 45.833 0.00 0.00 0.00 1.40
2669 5136 3.056035 GTGTACTCCCTCTGTTCGGAAAT 60.056 47.826 0.00 0.00 0.00 2.17
2670 5137 2.298163 GTGTACTCCCTCTGTTCGGAAA 59.702 50.000 0.00 0.00 0.00 3.13
2671 5138 1.891150 GTGTACTCCCTCTGTTCGGAA 59.109 52.381 0.00 0.00 0.00 4.30
2672 5139 1.202964 TGTGTACTCCCTCTGTTCGGA 60.203 52.381 0.00 0.00 0.00 4.55
2673 5140 1.067776 GTGTGTACTCCCTCTGTTCGG 60.068 57.143 0.00 0.00 0.00 4.30
2674 5141 1.611977 TGTGTGTACTCCCTCTGTTCG 59.388 52.381 0.00 0.00 0.00 3.95
2675 5142 3.963428 ATGTGTGTACTCCCTCTGTTC 57.037 47.619 0.00 0.00 0.00 3.18
2676 5143 3.244561 CCAATGTGTGTACTCCCTCTGTT 60.245 47.826 0.00 0.00 0.00 3.16
2677 5144 2.303022 CCAATGTGTGTACTCCCTCTGT 59.697 50.000 0.00 0.00 0.00 3.41
2678 5145 2.355108 CCCAATGTGTGTACTCCCTCTG 60.355 54.545 0.00 0.00 0.00 3.35
2679 5146 1.909302 CCCAATGTGTGTACTCCCTCT 59.091 52.381 0.00 0.00 0.00 3.69
2680 5147 1.628846 ACCCAATGTGTGTACTCCCTC 59.371 52.381 0.00 0.00 0.00 4.30
2681 5148 1.742308 ACCCAATGTGTGTACTCCCT 58.258 50.000 0.00 0.00 0.00 4.20
2682 5149 2.675889 CGTACCCAATGTGTGTACTCCC 60.676 54.545 0.00 0.00 34.17 4.30
2683 5150 2.613691 CGTACCCAATGTGTGTACTCC 58.386 52.381 0.00 0.00 34.17 3.85
2684 5151 1.997606 GCGTACCCAATGTGTGTACTC 59.002 52.381 0.00 0.00 34.17 2.59
2685 5152 1.621814 AGCGTACCCAATGTGTGTACT 59.378 47.619 0.00 0.00 34.17 2.73
2686 5153 1.730064 CAGCGTACCCAATGTGTGTAC 59.270 52.381 0.00 0.00 33.24 2.90
2687 5154 1.338294 CCAGCGTACCCAATGTGTGTA 60.338 52.381 0.00 0.00 0.00 2.90
2688 5155 0.605319 CCAGCGTACCCAATGTGTGT 60.605 55.000 0.00 0.00 0.00 3.72
2689 5156 0.321210 TCCAGCGTACCCAATGTGTG 60.321 55.000 0.00 0.00 0.00 3.82
2693 5160 0.744414 CCTGTCCAGCGTACCCAATG 60.744 60.000 0.00 0.00 0.00 2.82
2697 5164 1.614241 ATGACCTGTCCAGCGTACCC 61.614 60.000 0.00 0.00 0.00 3.69
2703 5170 1.134280 ACATGCTATGACCTGTCCAGC 60.134 52.381 11.85 11.85 37.25 4.85
2704 5171 2.996249 ACATGCTATGACCTGTCCAG 57.004 50.000 0.00 0.00 0.00 3.86
2717 5184 9.570468 AGAATCATATCATGAACTTTACATGCT 57.430 29.630 0.00 0.00 43.50 3.79
2744 5211 4.214332 TCCGACATGAGTCTGATTAGATCG 59.786 45.833 0.00 0.00 42.73 3.69
2761 5228 4.939052 AGAAACTTCTCTTCTTCCGACA 57.061 40.909 0.00 0.00 29.94 4.35
2796 5263 2.437281 CTGAGATCATGCCCTGTAGGTT 59.563 50.000 0.00 0.00 38.26 3.50
2798 5265 1.270732 GCTGAGATCATGCCCTGTAGG 60.271 57.143 0.00 0.00 39.47 3.18
2830 5297 0.036671 AAGGGACATTCGACGAACCC 60.037 55.000 21.43 21.43 37.79 4.11
2843 5310 2.305927 TCCAGAATCCAACTGAAGGGAC 59.694 50.000 0.00 0.00 37.54 4.46
2867 5334 4.014569 TGCTTGTACTGTGCCTTCATTA 57.985 40.909 0.00 0.00 0.00 1.90
2903 5370 7.201679 CCAAAAAGAGCAAGAGATCGAATATGT 60.202 37.037 0.00 0.00 34.73 2.29
2936 5403 8.462143 GTTCATACATAGAGAACTTGAAACGA 57.538 34.615 0.00 0.00 38.79 3.85
2945 5412 7.548097 TGGACTTGAGTTCATACATAGAGAAC 58.452 38.462 0.00 0.00 41.37 3.01
2948 5415 7.151308 GGATGGACTTGAGTTCATACATAGAG 58.849 42.308 9.37 0.00 43.96 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.