Multiple sequence alignment - TraesCS7B01G456400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G456400 chr7B 100.000 3434 0 0 1 3434 716649546 716652979 0.000000e+00 6342.0
1 TraesCS7B01G456400 chr7B 92.585 2306 117 34 522 2793 716566351 716568636 0.000000e+00 3262.0
2 TraesCS7B01G456400 chr7B 96.618 1153 39 0 1641 2793 716581133 716582285 0.000000e+00 1914.0
3 TraesCS7B01G456400 chr7B 97.364 607 16 0 2828 3434 716568636 716569242 0.000000e+00 1033.0
4 TraesCS7B01G456400 chr7B 87.706 545 48 9 2122 2666 716661980 716662505 4.870000e-173 617.0
5 TraesCS7B01G456400 chrUn 96.618 1153 39 0 1641 2793 370758091 370759243 0.000000e+00 1914.0
6 TraesCS7B01G456400 chrUn 96.444 1153 41 0 1641 2793 224999414 224998262 0.000000e+00 1903.0
7 TraesCS7B01G456400 chrUn 97.694 607 14 0 2828 3434 224998262 224997656 0.000000e+00 1044.0
8 TraesCS7B01G456400 chrUn 94.056 286 17 0 2508 2793 231064775 231065060 5.260000e-118 435.0
9 TraesCS7B01G456400 chr7D 87.402 1397 109 45 522 1883 619895674 619894310 0.000000e+00 1543.0
10 TraesCS7B01G456400 chr7D 89.886 613 60 2 2666 3278 486220570 486219960 0.000000e+00 787.0
11 TraesCS7B01G456400 chr7D 88.468 607 46 12 2074 2666 619894249 619893653 0.000000e+00 712.0
12 TraesCS7B01G456400 chr7D 86.842 570 65 6 2097 2666 619999360 619998801 2.250000e-176 628.0
13 TraesCS7B01G456400 chr7D 90.000 410 41 0 2667 3076 85356653 85357062 6.530000e-147 531.0
14 TraesCS7B01G456400 chr7D 90.970 299 27 0 1526 1824 619999736 619999438 1.480000e-108 403.0
15 TraesCS7B01G456400 chr7A 87.409 1374 109 44 546 1883 715224076 715225421 0.000000e+00 1520.0
16 TraesCS7B01G456400 chr7A 92.349 562 27 9 2115 2666 715225550 715226105 0.000000e+00 785.0
17 TraesCS7B01G456400 chr4A 87.824 772 79 4 2661 3432 667714187 667714943 0.000000e+00 891.0
18 TraesCS7B01G456400 chr3A 87.370 768 94 2 2666 3433 674080939 674081703 0.000000e+00 878.0
19 TraesCS7B01G456400 chr3A 90.954 409 37 0 2667 3075 423237008 423236600 5.010000e-153 551.0
20 TraesCS7B01G456400 chr4B 85.145 828 113 6 995 1813 70999392 70998566 0.000000e+00 839.0
21 TraesCS7B01G456400 chr4D 84.903 828 116 5 995 1813 48121587 48120760 0.000000e+00 828.0
22 TraesCS7B01G456400 chr4D 89.941 507 51 0 2667 3173 206224262 206223756 0.000000e+00 654.0
23 TraesCS7B01G456400 chr6B 90.830 458 42 0 2668 3125 142069491 142069034 6.300000e-172 614.0
24 TraesCS7B01G456400 chr3D 91.333 450 37 2 2986 3434 8916740 8917188 6.300000e-172 614.0
25 TraesCS7B01G456400 chr3D 89.532 449 47 0 2986 3434 576265958 576266406 1.380000e-158 569.0
26 TraesCS7B01G456400 chr5D 90.423 449 40 3 2986 3432 483237048 483237495 3.820000e-164 588.0
27 TraesCS7B01G456400 chr5A 89.648 454 45 2 2981 3434 83064225 83063774 8.260000e-161 577.0
28 TraesCS7B01G456400 chr3B 89.933 447 45 0 2986 3432 583703476 583703922 8.260000e-161 577.0
29 TraesCS7B01G456400 chr1B 95.349 43 1 1 330 371 332089172 332089214 2.210000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G456400 chr7B 716649546 716652979 3433 False 6342.0 6342 100.0000 1 3434 1 chr7B.!!$F2 3433
1 TraesCS7B01G456400 chr7B 716566351 716569242 2891 False 2147.5 3262 94.9745 522 3434 2 chr7B.!!$F4 2912
2 TraesCS7B01G456400 chr7B 716581133 716582285 1152 False 1914.0 1914 96.6180 1641 2793 1 chr7B.!!$F1 1152
3 TraesCS7B01G456400 chr7B 716661980 716662505 525 False 617.0 617 87.7060 2122 2666 1 chr7B.!!$F3 544
4 TraesCS7B01G456400 chrUn 370758091 370759243 1152 False 1914.0 1914 96.6180 1641 2793 1 chrUn.!!$F2 1152
5 TraesCS7B01G456400 chrUn 224997656 224999414 1758 True 1473.5 1903 97.0690 1641 3434 2 chrUn.!!$R1 1793
6 TraesCS7B01G456400 chr7D 619893653 619895674 2021 True 1127.5 1543 87.9350 522 2666 2 chr7D.!!$R2 2144
7 TraesCS7B01G456400 chr7D 486219960 486220570 610 True 787.0 787 89.8860 2666 3278 1 chr7D.!!$R1 612
8 TraesCS7B01G456400 chr7D 619998801 619999736 935 True 515.5 628 88.9060 1526 2666 2 chr7D.!!$R3 1140
9 TraesCS7B01G456400 chr7A 715224076 715226105 2029 False 1152.5 1520 89.8790 546 2666 2 chr7A.!!$F1 2120
10 TraesCS7B01G456400 chr4A 667714187 667714943 756 False 891.0 891 87.8240 2661 3432 1 chr4A.!!$F1 771
11 TraesCS7B01G456400 chr3A 674080939 674081703 764 False 878.0 878 87.3700 2666 3433 1 chr3A.!!$F1 767
12 TraesCS7B01G456400 chr4B 70998566 70999392 826 True 839.0 839 85.1450 995 1813 1 chr4B.!!$R1 818
13 TraesCS7B01G456400 chr4D 48120760 48121587 827 True 828.0 828 84.9030 995 1813 1 chr4D.!!$R1 818
14 TraesCS7B01G456400 chr4D 206223756 206224262 506 True 654.0 654 89.9410 2667 3173 1 chr4D.!!$R2 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.178975 TCTTGGCCATTGGTTCGGTT 60.179 50.0 6.09 0.00 0.0 4.44 F
325 326 0.318699 TCGATCAAATAGGCGCCTCG 60.319 55.0 36.73 27.85 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2155 1.071605 CCTGTTAGCGTCAGTTCAGC 58.928 55.000 5.45 0.0 0.0 4.26 R
2544 2621 9.017509 CATGATAATATCCCTGCAAACATAAGT 57.982 33.333 0.00 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 9.541884 AAAAATATTAAAGAGAGCCCCTTACAA 57.458 29.630 0.00 0.00 0.00 2.41
55 56 9.541884 AAAATATTAAAGAGAGCCCCTTACAAA 57.458 29.630 0.00 0.00 0.00 2.83
56 57 9.715119 AAATATTAAAGAGAGCCCCTTACAAAT 57.285 29.630 0.00 0.00 0.00 2.32
57 58 8.697507 ATATTAAAGAGAGCCCCTTACAAATG 57.302 34.615 0.00 0.00 0.00 2.32
58 59 4.388577 AAAGAGAGCCCCTTACAAATGT 57.611 40.909 0.00 0.00 0.00 2.71
59 60 4.388577 AAGAGAGCCCCTTACAAATGTT 57.611 40.909 0.00 0.00 0.00 2.71
60 61 3.690460 AGAGAGCCCCTTACAAATGTTG 58.310 45.455 0.00 0.00 0.00 3.33
62 63 3.157087 AGAGCCCCTTACAAATGTTGTG 58.843 45.455 3.90 0.00 45.03 3.33
63 64 1.618343 AGCCCCTTACAAATGTTGTGC 59.382 47.619 3.90 0.00 45.03 4.57
64 65 1.618343 GCCCCTTACAAATGTTGTGCT 59.382 47.619 3.90 0.00 45.03 4.40
65 66 2.823154 GCCCCTTACAAATGTTGTGCTA 59.177 45.455 3.90 0.00 45.03 3.49
66 67 3.119495 GCCCCTTACAAATGTTGTGCTAG 60.119 47.826 3.90 0.00 45.03 3.42
67 68 4.079253 CCCCTTACAAATGTTGTGCTAGT 58.921 43.478 3.90 0.00 45.03 2.57
68 69 4.522789 CCCCTTACAAATGTTGTGCTAGTT 59.477 41.667 3.90 0.00 45.03 2.24
69 70 5.708230 CCCCTTACAAATGTTGTGCTAGTTA 59.292 40.000 3.90 0.00 45.03 2.24
70 71 6.207810 CCCCTTACAAATGTTGTGCTAGTTAA 59.792 38.462 3.90 0.00 45.03 2.01
71 72 7.255660 CCCCTTACAAATGTTGTGCTAGTTAAA 60.256 37.037 3.90 0.00 45.03 1.52
72 73 8.303876 CCCTTACAAATGTTGTGCTAGTTAAAT 58.696 33.333 3.90 0.00 45.03 1.40
73 74 9.691362 CCTTACAAATGTTGTGCTAGTTAAATT 57.309 29.630 3.90 0.00 45.03 1.82
80 81 9.981114 AATGTTGTGCTAGTTAAATTAAAAGCT 57.019 25.926 16.98 2.54 32.87 3.74
81 82 8.795786 TGTTGTGCTAGTTAAATTAAAAGCTG 57.204 30.769 16.98 0.00 32.87 4.24
82 83 7.381139 TGTTGTGCTAGTTAAATTAAAAGCTGC 59.619 33.333 16.98 12.27 32.87 5.25
83 84 6.976088 TGTGCTAGTTAAATTAAAAGCTGCA 58.024 32.000 16.98 13.85 32.87 4.41
84 85 7.601856 TGTGCTAGTTAAATTAAAAGCTGCAT 58.398 30.769 16.98 0.00 32.87 3.96
85 86 8.735315 TGTGCTAGTTAAATTAAAAGCTGCATA 58.265 29.630 16.98 7.42 32.87 3.14
86 87 9.567848 GTGCTAGTTAAATTAAAAGCTGCATAA 57.432 29.630 16.98 0.00 32.87 1.90
87 88 9.567848 TGCTAGTTAAATTAAAAGCTGCATAAC 57.432 29.630 16.98 0.00 32.87 1.89
88 89 9.788960 GCTAGTTAAATTAAAAGCTGCATAACT 57.211 29.630 1.02 7.09 36.58 2.24
95 96 8.810652 AATTAAAAGCTGCATAACTTTTTCGA 57.189 26.923 20.55 11.80 42.00 3.71
96 97 7.851822 TTAAAAGCTGCATAACTTTTTCGAG 57.148 32.000 20.55 0.00 42.00 4.04
97 98 5.689383 AAAGCTGCATAACTTTTTCGAGA 57.311 34.783 1.02 0.00 32.24 4.04
98 99 4.935885 AGCTGCATAACTTTTTCGAGAG 57.064 40.909 1.02 0.00 0.00 3.20
99 100 4.319177 AGCTGCATAACTTTTTCGAGAGT 58.681 39.130 1.02 0.00 0.00 3.24
100 101 4.153117 AGCTGCATAACTTTTTCGAGAGTG 59.847 41.667 1.02 0.00 0.00 3.51
101 102 4.152402 GCTGCATAACTTTTTCGAGAGTGA 59.848 41.667 0.00 0.00 0.00 3.41
102 103 5.669848 GCTGCATAACTTTTTCGAGAGTGAG 60.670 44.000 0.00 0.00 0.00 3.51
103 104 5.538118 TGCATAACTTTTTCGAGAGTGAGA 58.462 37.500 0.00 0.00 0.00 3.27
104 105 6.166279 TGCATAACTTTTTCGAGAGTGAGAT 58.834 36.000 0.00 0.00 0.00 2.75
105 106 6.650807 TGCATAACTTTTTCGAGAGTGAGATT 59.349 34.615 0.00 0.00 0.00 2.40
106 107 7.173218 TGCATAACTTTTTCGAGAGTGAGATTT 59.827 33.333 0.00 0.00 0.00 2.17
107 108 7.479916 GCATAACTTTTTCGAGAGTGAGATTTG 59.520 37.037 0.00 0.00 0.00 2.32
108 109 6.927294 AACTTTTTCGAGAGTGAGATTTGT 57.073 33.333 0.00 0.00 0.00 2.83
109 110 9.706691 ATAACTTTTTCGAGAGTGAGATTTGTA 57.293 29.630 0.00 0.00 0.00 2.41
110 111 8.433421 AACTTTTTCGAGAGTGAGATTTGTAA 57.567 30.769 0.00 0.00 0.00 2.41
111 112 8.077836 ACTTTTTCGAGAGTGAGATTTGTAAG 57.922 34.615 0.00 0.00 0.00 2.34
112 113 6.467723 TTTTCGAGAGTGAGATTTGTAAGC 57.532 37.500 0.00 0.00 0.00 3.09
113 114 4.111375 TCGAGAGTGAGATTTGTAAGCC 57.889 45.455 0.00 0.00 0.00 4.35
114 115 3.764434 TCGAGAGTGAGATTTGTAAGCCT 59.236 43.478 0.00 0.00 0.00 4.58
115 116 4.948004 TCGAGAGTGAGATTTGTAAGCCTA 59.052 41.667 0.00 0.00 0.00 3.93
116 117 5.594725 TCGAGAGTGAGATTTGTAAGCCTAT 59.405 40.000 0.00 0.00 0.00 2.57
117 118 5.689514 CGAGAGTGAGATTTGTAAGCCTATG 59.310 44.000 0.00 0.00 0.00 2.23
118 119 5.363939 AGAGTGAGATTTGTAAGCCTATGC 58.636 41.667 0.00 0.00 37.95 3.14
143 144 5.643421 AGATTCTTATCTGTCTTGGCCAT 57.357 39.130 6.09 0.00 39.66 4.40
144 145 6.011122 AGATTCTTATCTGTCTTGGCCATT 57.989 37.500 6.09 0.00 39.66 3.16
145 146 5.826737 AGATTCTTATCTGTCTTGGCCATTG 59.173 40.000 6.09 2.48 39.66 2.82
146 147 3.889815 TCTTATCTGTCTTGGCCATTGG 58.110 45.455 6.09 0.00 0.00 3.16
147 148 3.266772 TCTTATCTGTCTTGGCCATTGGT 59.733 43.478 6.09 0.00 0.00 3.67
148 149 2.610438 ATCTGTCTTGGCCATTGGTT 57.390 45.000 6.09 0.00 0.00 3.67
149 150 1.909700 TCTGTCTTGGCCATTGGTTC 58.090 50.000 6.09 0.00 0.00 3.62
150 151 0.523072 CTGTCTTGGCCATTGGTTCG 59.477 55.000 6.09 0.00 0.00 3.95
151 152 0.893270 TGTCTTGGCCATTGGTTCGG 60.893 55.000 6.09 0.00 0.00 4.30
152 153 0.893727 GTCTTGGCCATTGGTTCGGT 60.894 55.000 6.09 0.00 0.00 4.69
153 154 0.178975 TCTTGGCCATTGGTTCGGTT 60.179 50.000 6.09 0.00 0.00 4.44
154 155 0.678950 CTTGGCCATTGGTTCGGTTT 59.321 50.000 6.09 0.00 0.00 3.27
155 156 0.390860 TTGGCCATTGGTTCGGTTTG 59.609 50.000 6.09 0.00 0.00 2.93
156 157 1.291906 GGCCATTGGTTCGGTTTGG 59.708 57.895 4.26 0.00 0.00 3.28
157 158 1.182385 GGCCATTGGTTCGGTTTGGA 61.182 55.000 4.26 0.00 0.00 3.53
158 159 0.894835 GCCATTGGTTCGGTTTGGAT 59.105 50.000 4.26 0.00 0.00 3.41
159 160 1.135112 GCCATTGGTTCGGTTTGGATC 60.135 52.381 4.26 0.00 0.00 3.36
160 161 2.446435 CCATTGGTTCGGTTTGGATCT 58.554 47.619 0.00 0.00 0.00 2.75
161 162 2.423538 CCATTGGTTCGGTTTGGATCTC 59.576 50.000 0.00 0.00 0.00 2.75
162 163 1.803334 TTGGTTCGGTTTGGATCTCG 58.197 50.000 0.00 0.00 0.00 4.04
163 164 0.970640 TGGTTCGGTTTGGATCTCGA 59.029 50.000 0.00 0.00 0.00 4.04
164 165 1.337447 TGGTTCGGTTTGGATCTCGAC 60.337 52.381 0.00 0.00 0.00 4.20
165 166 1.337447 GGTTCGGTTTGGATCTCGACA 60.337 52.381 0.00 0.00 0.00 4.35
166 167 1.993370 GTTCGGTTTGGATCTCGACAG 59.007 52.381 0.00 0.00 0.00 3.51
167 168 1.541379 TCGGTTTGGATCTCGACAGA 58.459 50.000 0.00 0.00 0.00 3.41
168 169 1.890489 TCGGTTTGGATCTCGACAGAA 59.110 47.619 0.00 0.00 30.24 3.02
169 170 2.496070 TCGGTTTGGATCTCGACAGAAT 59.504 45.455 0.00 0.00 30.24 2.40
170 171 3.056107 TCGGTTTGGATCTCGACAGAATT 60.056 43.478 0.00 0.00 30.24 2.17
171 172 4.158949 TCGGTTTGGATCTCGACAGAATTA 59.841 41.667 0.00 0.00 30.24 1.40
172 173 4.868171 CGGTTTGGATCTCGACAGAATTAA 59.132 41.667 0.00 0.00 30.24 1.40
173 174 5.350365 CGGTTTGGATCTCGACAGAATTAAA 59.650 40.000 0.00 0.00 30.24 1.52
174 175 6.455646 CGGTTTGGATCTCGACAGAATTAAAG 60.456 42.308 0.00 0.00 30.24 1.85
175 176 6.371825 GGTTTGGATCTCGACAGAATTAAAGT 59.628 38.462 0.00 0.00 30.24 2.66
176 177 6.968131 TTGGATCTCGACAGAATTAAAGTG 57.032 37.500 0.00 0.00 30.24 3.16
177 178 5.419542 TGGATCTCGACAGAATTAAAGTGG 58.580 41.667 0.00 0.00 30.24 4.00
178 179 4.811557 GGATCTCGACAGAATTAAAGTGGG 59.188 45.833 0.00 0.00 30.24 4.61
179 180 4.884668 TCTCGACAGAATTAAAGTGGGT 57.115 40.909 0.00 0.00 0.00 4.51
180 181 5.988310 TCTCGACAGAATTAAAGTGGGTA 57.012 39.130 0.00 0.00 0.00 3.69
181 182 5.717119 TCTCGACAGAATTAAAGTGGGTAC 58.283 41.667 0.00 0.00 0.00 3.34
182 183 6.629739 ATCTCGACAGAATTAAAGTGGGTACC 60.630 42.308 2.17 2.17 40.38 3.34
183 184 8.939630 ATCTCGACAGAATTAAAGTGGGTACCA 61.940 40.741 15.35 0.00 45.69 3.25
196 197 2.597578 GGTACCACTGGGATTTTGGT 57.402 50.000 7.15 0.00 45.78 3.67
197 198 2.884320 GGTACCACTGGGATTTTGGTT 58.116 47.619 7.15 0.00 40.98 3.67
198 199 2.560981 GGTACCACTGGGATTTTGGTTG 59.439 50.000 7.15 0.00 40.98 3.77
199 200 2.765689 ACCACTGGGATTTTGGTTGA 57.234 45.000 0.00 0.00 40.98 3.18
200 201 3.039252 ACCACTGGGATTTTGGTTGAA 57.961 42.857 0.00 0.00 40.98 2.69
201 202 2.965147 ACCACTGGGATTTTGGTTGAAG 59.035 45.455 0.00 0.00 40.98 3.02
202 203 2.965147 CCACTGGGATTTTGGTTGAAGT 59.035 45.455 0.00 0.00 35.59 3.01
203 204 3.005791 CCACTGGGATTTTGGTTGAAGTC 59.994 47.826 0.00 0.00 35.59 3.01
204 205 3.636300 CACTGGGATTTTGGTTGAAGTCA 59.364 43.478 0.00 0.00 0.00 3.41
205 206 4.099266 CACTGGGATTTTGGTTGAAGTCAA 59.901 41.667 0.00 0.00 0.00 3.18
206 207 4.901250 ACTGGGATTTTGGTTGAAGTCAAT 59.099 37.500 0.00 0.00 38.24 2.57
207 208 5.366477 ACTGGGATTTTGGTTGAAGTCAATT 59.634 36.000 0.00 0.00 38.24 2.32
208 209 6.126796 ACTGGGATTTTGGTTGAAGTCAATTT 60.127 34.615 0.00 0.00 38.24 1.82
209 210 6.657875 TGGGATTTTGGTTGAAGTCAATTTT 58.342 32.000 0.00 0.00 38.24 1.82
210 211 7.796054 TGGGATTTTGGTTGAAGTCAATTTTA 58.204 30.769 0.00 0.00 38.24 1.52
211 212 7.930865 TGGGATTTTGGTTGAAGTCAATTTTAG 59.069 33.333 0.00 0.00 38.24 1.85
212 213 8.147704 GGGATTTTGGTTGAAGTCAATTTTAGA 58.852 33.333 0.00 0.00 38.24 2.10
213 214 8.978539 GGATTTTGGTTGAAGTCAATTTTAGAC 58.021 33.333 0.00 0.00 38.24 2.59
214 215 9.528018 GATTTTGGTTGAAGTCAATTTTAGACA 57.472 29.630 0.00 0.00 38.24 3.41
216 217 9.883142 TTTTGGTTGAAGTCAATTTTAGACATT 57.117 25.926 0.00 0.00 38.24 2.71
217 218 9.528018 TTTGGTTGAAGTCAATTTTAGACATTC 57.472 29.630 0.00 0.00 38.24 2.67
218 219 8.231692 TGGTTGAAGTCAATTTTAGACATTCA 57.768 30.769 0.00 0.00 38.24 2.57
219 220 8.690884 TGGTTGAAGTCAATTTTAGACATTCAA 58.309 29.630 12.58 12.58 38.81 2.69
220 221 9.185192 GGTTGAAGTCAATTTTAGACATTCAAG 57.815 33.333 14.80 0.00 40.05 3.02
221 222 9.950680 GTTGAAGTCAATTTTAGACATTCAAGA 57.049 29.630 14.80 0.00 40.05 3.02
223 224 9.950680 TGAAGTCAATTTTAGACATTCAAGAAC 57.049 29.630 0.00 0.00 38.46 3.01
224 225 9.107367 GAAGTCAATTTTAGACATTCAAGAACG 57.893 33.333 0.00 0.00 38.46 3.95
225 226 8.378172 AGTCAATTTTAGACATTCAAGAACGA 57.622 30.769 0.00 0.00 38.46 3.85
226 227 8.283291 AGTCAATTTTAGACATTCAAGAACGAC 58.717 33.333 0.00 0.00 38.46 4.34
227 228 8.067784 GTCAATTTTAGACATTCAAGAACGACA 58.932 33.333 0.00 0.00 36.06 4.35
228 229 8.783093 TCAATTTTAGACATTCAAGAACGACAT 58.217 29.630 0.00 0.00 0.00 3.06
232 233 5.786401 AGACATTCAAGAACGACATAAGC 57.214 39.130 0.00 0.00 0.00 3.09
233 234 5.482908 AGACATTCAAGAACGACATAAGCT 58.517 37.500 0.00 0.00 0.00 3.74
234 235 6.631016 AGACATTCAAGAACGACATAAGCTA 58.369 36.000 0.00 0.00 0.00 3.32
235 236 7.268586 AGACATTCAAGAACGACATAAGCTAT 58.731 34.615 0.00 0.00 0.00 2.97
236 237 8.414003 AGACATTCAAGAACGACATAAGCTATA 58.586 33.333 0.00 0.00 0.00 1.31
237 238 9.197694 GACATTCAAGAACGACATAAGCTATAT 57.802 33.333 0.00 0.00 0.00 0.86
238 239 9.547753 ACATTCAAGAACGACATAAGCTATATT 57.452 29.630 0.00 0.00 0.00 1.28
242 243 9.817809 TCAAGAACGACATAAGCTATATTTTCT 57.182 29.630 0.00 0.00 0.00 2.52
244 245 9.817809 AAGAACGACATAAGCTATATTTTCTCA 57.182 29.630 0.00 0.00 0.00 3.27
245 246 9.817809 AGAACGACATAAGCTATATTTTCTCAA 57.182 29.630 0.00 0.00 0.00 3.02
246 247 9.851043 GAACGACATAAGCTATATTTTCTCAAC 57.149 33.333 0.00 0.00 0.00 3.18
247 248 9.601217 AACGACATAAGCTATATTTTCTCAACT 57.399 29.630 0.00 0.00 0.00 3.16
248 249 9.601217 ACGACATAAGCTATATTTTCTCAACTT 57.399 29.630 0.00 0.00 0.00 2.66
254 255 7.466746 AGCTATATTTTCTCAACTTTTGCCA 57.533 32.000 0.00 0.00 0.00 4.92
255 256 8.071177 AGCTATATTTTCTCAACTTTTGCCAT 57.929 30.769 0.00 0.00 0.00 4.40
256 257 9.189156 AGCTATATTTTCTCAACTTTTGCCATA 57.811 29.630 0.00 0.00 0.00 2.74
257 258 9.971922 GCTATATTTTCTCAACTTTTGCCATAT 57.028 29.630 0.00 0.00 0.00 1.78
262 263 7.775053 TTTCTCAACTTTTGCCATATTACCT 57.225 32.000 0.00 0.00 0.00 3.08
263 264 8.871629 TTTCTCAACTTTTGCCATATTACCTA 57.128 30.769 0.00 0.00 0.00 3.08
264 265 8.506168 TTCTCAACTTTTGCCATATTACCTAG 57.494 34.615 0.00 0.00 0.00 3.02
265 266 7.054124 TCTCAACTTTTGCCATATTACCTAGG 58.946 38.462 7.41 7.41 0.00 3.02
266 267 6.126409 TCAACTTTTGCCATATTACCTAGGG 58.874 40.000 14.81 0.00 34.26 3.53
281 282 3.692257 CTAGGGCCTAGGACATGAATG 57.308 52.381 29.55 3.79 31.03 2.67
282 283 1.898863 AGGGCCTAGGACATGAATGT 58.101 50.000 18.82 0.00 45.16 2.71
283 284 2.208872 AGGGCCTAGGACATGAATGTT 58.791 47.619 18.82 0.00 41.95 2.71
284 285 2.582636 AGGGCCTAGGACATGAATGTTT 59.417 45.455 18.82 0.00 41.95 2.83
285 286 3.011708 AGGGCCTAGGACATGAATGTTTT 59.988 43.478 18.82 0.00 41.95 2.43
286 287 3.381590 GGGCCTAGGACATGAATGTTTTC 59.618 47.826 18.82 0.00 41.95 2.29
287 288 3.381590 GGCCTAGGACATGAATGTTTTCC 59.618 47.826 14.75 0.00 41.95 3.13
288 289 3.381590 GCCTAGGACATGAATGTTTTCCC 59.618 47.826 14.75 0.00 41.95 3.97
289 290 3.627577 CCTAGGACATGAATGTTTTCCCG 59.372 47.826 1.05 0.00 41.95 5.14
290 291 2.446435 AGGACATGAATGTTTTCCCGG 58.554 47.619 0.00 0.00 41.95 5.73
291 292 2.167662 GGACATGAATGTTTTCCCGGT 58.832 47.619 0.00 0.00 41.95 5.28
292 293 2.163613 GGACATGAATGTTTTCCCGGTC 59.836 50.000 0.00 0.00 41.95 4.79
293 294 2.817258 GACATGAATGTTTTCCCGGTCA 59.183 45.455 0.00 0.00 41.95 4.02
294 295 3.430453 ACATGAATGTTTTCCCGGTCAT 58.570 40.909 0.00 0.00 37.90 3.06
295 296 3.443681 ACATGAATGTTTTCCCGGTCATC 59.556 43.478 0.00 0.00 37.90 2.92
296 297 3.147553 TGAATGTTTTCCCGGTCATCA 57.852 42.857 0.00 0.00 0.00 3.07
297 298 3.491342 TGAATGTTTTCCCGGTCATCAA 58.509 40.909 0.00 0.00 0.00 2.57
298 299 3.891977 TGAATGTTTTCCCGGTCATCAAA 59.108 39.130 0.00 0.00 0.00 2.69
299 300 3.934457 ATGTTTTCCCGGTCATCAAAC 57.066 42.857 0.00 2.65 0.00 2.93
300 301 2.656002 TGTTTTCCCGGTCATCAAACA 58.344 42.857 0.00 5.32 35.50 2.83
301 302 3.024547 TGTTTTCCCGGTCATCAAACAA 58.975 40.909 0.00 0.00 35.06 2.83
302 303 3.639094 TGTTTTCCCGGTCATCAAACAAT 59.361 39.130 0.00 0.00 35.06 2.71
303 304 3.932545 TTTCCCGGTCATCAAACAATG 57.067 42.857 0.00 0.00 0.00 2.82
304 305 2.577606 TCCCGGTCATCAAACAATGT 57.422 45.000 0.00 0.00 0.00 2.71
305 306 2.870175 TCCCGGTCATCAAACAATGTT 58.130 42.857 0.00 0.00 0.00 2.71
306 307 3.226777 TCCCGGTCATCAAACAATGTTT 58.773 40.909 5.41 5.41 0.00 2.83
307 308 3.254657 TCCCGGTCATCAAACAATGTTTC 59.745 43.478 8.59 0.00 0.00 2.78
308 309 3.233578 CCGGTCATCAAACAATGTTTCG 58.766 45.455 8.59 8.21 0.00 3.46
309 310 3.058570 CCGGTCATCAAACAATGTTTCGA 60.059 43.478 8.59 10.28 0.00 3.71
310 311 4.379394 CCGGTCATCAAACAATGTTTCGAT 60.379 41.667 8.59 11.94 0.00 3.59
311 312 4.788100 CGGTCATCAAACAATGTTTCGATC 59.212 41.667 8.59 5.66 0.00 3.69
312 313 5.616645 CGGTCATCAAACAATGTTTCGATCA 60.617 40.000 8.59 0.20 0.00 2.92
313 314 6.148948 GGTCATCAAACAATGTTTCGATCAA 58.851 36.000 8.59 4.32 0.00 2.57
314 315 6.640499 GGTCATCAAACAATGTTTCGATCAAA 59.360 34.615 8.59 2.32 0.00 2.69
315 316 7.329226 GGTCATCAAACAATGTTTCGATCAAAT 59.671 33.333 8.59 0.00 0.00 2.32
316 317 9.340695 GTCATCAAACAATGTTTCGATCAAATA 57.659 29.630 8.59 0.00 0.00 1.40
317 318 9.558648 TCATCAAACAATGTTTCGATCAAATAG 57.441 29.630 8.59 3.93 0.00 1.73
318 319 8.800972 CATCAAACAATGTTTCGATCAAATAGG 58.199 33.333 8.59 0.00 0.00 2.57
319 320 6.806249 TCAAACAATGTTTCGATCAAATAGGC 59.194 34.615 8.59 0.00 0.00 3.93
320 321 4.908736 ACAATGTTTCGATCAAATAGGCG 58.091 39.130 0.00 0.00 0.00 5.52
321 322 3.609103 ATGTTTCGATCAAATAGGCGC 57.391 42.857 0.00 0.00 0.00 6.53
322 323 1.668751 TGTTTCGATCAAATAGGCGCC 59.331 47.619 21.89 21.89 0.00 6.53
323 324 1.940613 GTTTCGATCAAATAGGCGCCT 59.059 47.619 34.85 34.85 0.00 5.52
324 325 1.865865 TTCGATCAAATAGGCGCCTC 58.134 50.000 36.73 16.49 0.00 4.70
325 326 0.318699 TCGATCAAATAGGCGCCTCG 60.319 55.000 36.73 27.85 0.00 4.63
338 339 1.651987 CGCCTCGCTAATTCAAAGGA 58.348 50.000 0.00 0.00 0.00 3.36
339 340 2.213499 CGCCTCGCTAATTCAAAGGAT 58.787 47.619 0.00 0.00 0.00 3.24
340 341 2.614057 CGCCTCGCTAATTCAAAGGATT 59.386 45.455 0.00 0.00 0.00 3.01
341 342 3.065371 CGCCTCGCTAATTCAAAGGATTT 59.935 43.478 0.00 0.00 40.26 2.17
342 343 4.438744 CGCCTCGCTAATTCAAAGGATTTT 60.439 41.667 0.00 0.00 35.03 1.82
343 344 5.410924 GCCTCGCTAATTCAAAGGATTTTT 58.589 37.500 0.00 0.00 35.03 1.94
344 345 5.516696 GCCTCGCTAATTCAAAGGATTTTTC 59.483 40.000 0.00 0.00 35.03 2.29
345 346 6.620678 CCTCGCTAATTCAAAGGATTTTTCA 58.379 36.000 0.00 0.00 35.03 2.69
346 347 7.260603 CCTCGCTAATTCAAAGGATTTTTCAT 58.739 34.615 0.00 0.00 35.03 2.57
347 348 8.405531 CCTCGCTAATTCAAAGGATTTTTCATA 58.594 33.333 0.00 0.00 35.03 2.15
348 349 9.443283 CTCGCTAATTCAAAGGATTTTTCATAG 57.557 33.333 0.00 0.00 35.03 2.23
349 350 8.405531 TCGCTAATTCAAAGGATTTTTCATAGG 58.594 33.333 0.00 0.00 35.03 2.57
350 351 8.405531 CGCTAATTCAAAGGATTTTTCATAGGA 58.594 33.333 0.00 0.00 35.03 2.94
360 361 9.948964 AAGGATTTTTCATAGGAATTTTGAAGG 57.051 29.630 0.00 0.00 31.54 3.46
361 362 9.325248 AGGATTTTTCATAGGAATTTTGAAGGA 57.675 29.630 0.00 0.00 31.54 3.36
362 363 9.371136 GGATTTTTCATAGGAATTTTGAAGGAC 57.629 33.333 0.00 0.00 31.54 3.85
368 369 9.449719 TTCATAGGAATTTTGAAGGACTAGAAC 57.550 33.333 0.00 0.00 0.00 3.01
369 370 8.047310 TCATAGGAATTTTGAAGGACTAGAACC 58.953 37.037 0.00 0.00 0.00 3.62
370 371 6.455690 AGGAATTTTGAAGGACTAGAACCT 57.544 37.500 0.00 1.76 39.69 3.50
371 372 6.477253 AGGAATTTTGAAGGACTAGAACCTC 58.523 40.000 12.09 7.85 36.67 3.85
372 373 6.273495 AGGAATTTTGAAGGACTAGAACCTCT 59.727 38.462 12.09 5.07 36.67 3.69
373 374 6.596106 GGAATTTTGAAGGACTAGAACCTCTC 59.404 42.308 12.09 11.75 36.67 3.20
374 375 5.485209 TTTTGAAGGACTAGAACCTCTCC 57.515 43.478 12.09 0.90 36.67 3.71
375 376 3.827817 TGAAGGACTAGAACCTCTCCA 57.172 47.619 12.09 8.86 36.67 3.86
376 377 3.702792 TGAAGGACTAGAACCTCTCCAG 58.297 50.000 12.09 0.00 36.67 3.86
377 378 3.333980 TGAAGGACTAGAACCTCTCCAGA 59.666 47.826 12.09 0.00 36.67 3.86
378 379 4.017037 TGAAGGACTAGAACCTCTCCAGAT 60.017 45.833 12.09 0.00 36.67 2.90
379 380 4.618378 AGGACTAGAACCTCTCCAGATT 57.382 45.455 0.00 0.00 31.43 2.40
380 381 4.954089 AGGACTAGAACCTCTCCAGATTT 58.046 43.478 0.00 0.00 31.43 2.17
381 382 4.959839 AGGACTAGAACCTCTCCAGATTTC 59.040 45.833 0.00 0.00 31.43 2.17
382 383 4.959839 GGACTAGAACCTCTCCAGATTTCT 59.040 45.833 0.00 6.08 33.48 2.52
383 384 5.163457 GGACTAGAACCTCTCCAGATTTCTG 60.163 48.000 0.00 0.39 43.40 3.02
384 385 3.625649 AGAACCTCTCCAGATTTCTGC 57.374 47.619 1.90 0.00 42.47 4.26
385 386 3.180507 AGAACCTCTCCAGATTTCTGCT 58.819 45.455 1.90 0.00 42.47 4.24
386 387 3.055240 AGAACCTCTCCAGATTTCTGCTG 60.055 47.826 1.90 0.00 42.47 4.41
387 388 2.544721 ACCTCTCCAGATTTCTGCTGA 58.455 47.619 1.90 2.21 42.47 4.26
388 389 3.113824 ACCTCTCCAGATTTCTGCTGAT 58.886 45.455 1.90 0.00 42.47 2.90
389 390 3.134442 ACCTCTCCAGATTTCTGCTGATC 59.866 47.826 1.90 0.00 42.47 2.92
390 391 3.134262 CCTCTCCAGATTTCTGCTGATCA 59.866 47.826 1.90 0.00 42.47 2.92
391 392 4.202377 CCTCTCCAGATTTCTGCTGATCAT 60.202 45.833 0.00 0.00 42.47 2.45
392 393 5.369409 TCTCCAGATTTCTGCTGATCATT 57.631 39.130 0.00 0.00 42.47 2.57
393 394 5.752650 TCTCCAGATTTCTGCTGATCATTT 58.247 37.500 0.00 0.00 42.47 2.32
394 395 5.589050 TCTCCAGATTTCTGCTGATCATTTG 59.411 40.000 0.00 0.00 42.47 2.32
395 396 5.503002 TCCAGATTTCTGCTGATCATTTGA 58.497 37.500 0.00 0.00 42.47 2.69
396 397 6.127101 TCCAGATTTCTGCTGATCATTTGAT 58.873 36.000 0.00 0.00 42.47 2.57
397 398 6.605995 TCCAGATTTCTGCTGATCATTTGATT 59.394 34.615 0.00 0.00 42.47 2.57
398 399 7.123697 TCCAGATTTCTGCTGATCATTTGATTT 59.876 33.333 0.00 0.00 42.47 2.17
399 400 7.222805 CCAGATTTCTGCTGATCATTTGATTTG 59.777 37.037 0.00 0.00 42.47 2.32
400 401 7.222805 CAGATTTCTGCTGATCATTTGATTTGG 59.777 37.037 0.00 0.00 37.15 3.28
401 402 6.593268 TTTCTGCTGATCATTTGATTTGGA 57.407 33.333 0.00 0.00 34.37 3.53
402 403 5.830000 TCTGCTGATCATTTGATTTGGAG 57.170 39.130 0.00 2.61 34.37 3.86
403 404 4.643334 TCTGCTGATCATTTGATTTGGAGG 59.357 41.667 0.00 0.00 34.37 4.30
404 405 3.131577 TGCTGATCATTTGATTTGGAGGC 59.868 43.478 0.00 0.00 34.37 4.70
405 406 3.383825 GCTGATCATTTGATTTGGAGGCT 59.616 43.478 0.00 0.00 34.37 4.58
406 407 4.142004 GCTGATCATTTGATTTGGAGGCTT 60.142 41.667 0.00 0.00 34.37 4.35
407 408 5.333299 TGATCATTTGATTTGGAGGCTTG 57.667 39.130 0.00 0.00 34.37 4.01
408 409 5.018149 TGATCATTTGATTTGGAGGCTTGA 58.982 37.500 0.00 0.00 34.37 3.02
409 410 5.481122 TGATCATTTGATTTGGAGGCTTGAA 59.519 36.000 0.00 0.00 34.37 2.69
410 411 6.155565 TGATCATTTGATTTGGAGGCTTGAAT 59.844 34.615 0.00 0.00 34.37 2.57
411 412 6.363167 TCATTTGATTTGGAGGCTTGAATT 57.637 33.333 0.00 0.00 0.00 2.17
412 413 6.400568 TCATTTGATTTGGAGGCTTGAATTC 58.599 36.000 0.00 0.00 0.00 2.17
413 414 4.806640 TTGATTTGGAGGCTTGAATTCC 57.193 40.909 2.27 0.00 0.00 3.01
414 415 3.777087 TGATTTGGAGGCTTGAATTCCA 58.223 40.909 2.27 0.00 39.16 3.53
415 416 4.355549 TGATTTGGAGGCTTGAATTCCAT 58.644 39.130 2.27 0.00 40.48 3.41
416 417 5.517924 TGATTTGGAGGCTTGAATTCCATA 58.482 37.500 2.27 0.00 40.48 2.74
417 418 5.595542 TGATTTGGAGGCTTGAATTCCATAG 59.404 40.000 2.27 0.00 40.48 2.23
418 419 4.860802 TTGGAGGCTTGAATTCCATAGA 57.139 40.909 2.27 0.00 40.48 1.98
419 420 4.860802 TGGAGGCTTGAATTCCATAGAA 57.139 40.909 2.27 0.00 36.13 2.10
420 421 5.191727 TGGAGGCTTGAATTCCATAGAAA 57.808 39.130 2.27 0.00 36.13 2.52
421 422 5.769835 TGGAGGCTTGAATTCCATAGAAAT 58.230 37.500 2.27 0.00 36.13 2.17
422 423 6.197168 TGGAGGCTTGAATTCCATAGAAATT 58.803 36.000 2.27 0.00 36.13 1.82
423 424 6.669154 TGGAGGCTTGAATTCCATAGAAATTT 59.331 34.615 2.27 0.00 36.13 1.82
424 425 7.180766 TGGAGGCTTGAATTCCATAGAAATTTT 59.819 33.333 2.27 0.00 36.13 1.82
425 426 8.043113 GGAGGCTTGAATTCCATAGAAATTTTT 58.957 33.333 2.27 0.00 35.09 1.94
426 427 9.091784 GAGGCTTGAATTCCATAGAAATTTTTC 57.908 33.333 2.27 0.00 35.09 2.29
428 429 9.440773 GGCTTGAATTCCATAGAAATTTTTCTT 57.559 29.630 10.58 0.00 44.70 2.52
451 452 9.739276 TCTTATAGAATCATTTGTGTTTCCAGT 57.261 29.630 0.00 0.00 0.00 4.00
454 455 6.469782 AGAATCATTTGTGTTTCCAGTTGT 57.530 33.333 0.00 0.00 0.00 3.32
455 456 6.507023 AGAATCATTTGTGTTTCCAGTTGTC 58.493 36.000 0.00 0.00 0.00 3.18
456 457 5.850557 ATCATTTGTGTTTCCAGTTGTCA 57.149 34.783 0.00 0.00 0.00 3.58
457 458 5.850557 TCATTTGTGTTTCCAGTTGTCAT 57.149 34.783 0.00 0.00 0.00 3.06
458 459 5.590145 TCATTTGTGTTTCCAGTTGTCATG 58.410 37.500 0.00 0.00 0.00 3.07
459 460 5.359292 TCATTTGTGTTTCCAGTTGTCATGA 59.641 36.000 0.00 0.00 0.00 3.07
460 461 4.630894 TTGTGTTTCCAGTTGTCATGAC 57.369 40.909 19.27 19.27 0.00 3.06
461 462 3.615155 TGTGTTTCCAGTTGTCATGACA 58.385 40.909 24.56 24.56 39.98 3.58
462 463 4.206375 TGTGTTTCCAGTTGTCATGACAT 58.794 39.130 28.32 12.72 41.52 3.06
463 464 4.644234 TGTGTTTCCAGTTGTCATGACATT 59.356 37.500 28.32 17.04 41.52 2.71
464 465 5.215160 GTGTTTCCAGTTGTCATGACATTC 58.785 41.667 28.32 22.32 41.52 2.67
465 466 4.278170 TGTTTCCAGTTGTCATGACATTCC 59.722 41.667 28.32 18.45 41.52 3.01
466 467 3.786368 TCCAGTTGTCATGACATTCCA 57.214 42.857 28.32 11.57 41.52 3.53
467 468 4.097551 TCCAGTTGTCATGACATTCCAA 57.902 40.909 28.32 11.18 41.52 3.53
468 469 3.820467 TCCAGTTGTCATGACATTCCAAC 59.180 43.478 28.32 21.72 41.52 3.77
469 470 3.822735 CCAGTTGTCATGACATTCCAACT 59.177 43.478 28.32 23.47 44.72 3.16
470 471 5.003160 CCAGTTGTCATGACATTCCAACTA 58.997 41.667 28.32 8.89 42.68 2.24
471 472 5.649395 CCAGTTGTCATGACATTCCAACTAT 59.351 40.000 28.32 6.48 42.68 2.12
472 473 6.151648 CCAGTTGTCATGACATTCCAACTATT 59.848 38.462 28.32 5.77 42.68 1.73
473 474 7.309377 CCAGTTGTCATGACATTCCAACTATTT 60.309 37.037 28.32 5.46 42.68 1.40
474 475 7.539710 CAGTTGTCATGACATTCCAACTATTTG 59.460 37.037 28.32 13.13 42.68 2.32
475 476 7.231317 AGTTGTCATGACATTCCAACTATTTGT 59.769 33.333 28.32 4.45 42.73 2.83
476 477 7.523293 TGTCATGACATTCCAACTATTTGTT 57.477 32.000 24.56 0.00 36.42 2.83
477 478 7.950512 TGTCATGACATTCCAACTATTTGTTT 58.049 30.769 24.56 0.00 34.84 2.83
478 479 8.420222 TGTCATGACATTCCAACTATTTGTTTT 58.580 29.630 24.56 0.00 34.84 2.43
479 480 9.260002 GTCATGACATTCCAACTATTTGTTTTT 57.740 29.630 21.07 0.00 36.63 1.94
480 481 9.474920 TCATGACATTCCAACTATTTGTTTTTC 57.525 29.630 0.00 0.00 36.63 2.29
481 482 8.711457 CATGACATTCCAACTATTTGTTTTTCC 58.289 33.333 0.00 0.00 36.63 3.13
482 483 8.017418 TGACATTCCAACTATTTGTTTTTCCT 57.983 30.769 0.00 0.00 36.63 3.36
483 484 9.137459 TGACATTCCAACTATTTGTTTTTCCTA 57.863 29.630 0.00 0.00 36.63 2.94
490 491 9.981114 CCAACTATTTGTTTTTCCTATTTCTGT 57.019 29.630 0.00 0.00 36.63 3.41
503 504 8.810652 TTCCTATTTCTGTGTTTTTACAATGC 57.189 30.769 0.00 0.00 0.00 3.56
504 505 8.177119 TCCTATTTCTGTGTTTTTACAATGCT 57.823 30.769 0.00 0.00 0.00 3.79
505 506 9.290988 TCCTATTTCTGTGTTTTTACAATGCTA 57.709 29.630 0.00 0.00 0.00 3.49
509 510 9.979578 ATTTCTGTGTTTTTACAATGCTATGAA 57.020 25.926 0.00 0.00 0.00 2.57
510 511 9.979578 TTTCTGTGTTTTTACAATGCTATGAAT 57.020 25.926 0.00 0.00 0.00 2.57
511 512 9.624697 TTCTGTGTTTTTACAATGCTATGAATC 57.375 29.630 0.00 0.00 0.00 2.52
512 513 8.791675 TCTGTGTTTTTACAATGCTATGAATCA 58.208 29.630 0.00 0.00 0.00 2.57
513 514 9.409312 CTGTGTTTTTACAATGCTATGAATCAA 57.591 29.630 0.00 0.00 0.00 2.57
514 515 9.926158 TGTGTTTTTACAATGCTATGAATCAAT 57.074 25.926 0.00 0.00 0.00 2.57
516 517 9.926158 TGTTTTTACAATGCTATGAATCAATGT 57.074 25.926 0.00 0.00 31.93 2.71
518 519 8.929827 TTTTACAATGCTATGAATCAATGTGG 57.070 30.769 0.00 0.00 30.04 4.17
519 520 4.940463 ACAATGCTATGAATCAATGTGGC 58.060 39.130 0.00 0.00 0.00 5.01
520 521 4.202182 ACAATGCTATGAATCAATGTGGCC 60.202 41.667 0.00 0.00 0.00 5.36
534 535 7.341445 TCAATGTGGCCCTAAACATTATTAC 57.659 36.000 16.40 0.00 43.41 1.89
544 545 9.136952 GCCCTAAACATTATTACGACTATGTAG 57.863 37.037 0.00 0.00 31.40 2.74
574 575 8.416329 AGCTCTATTGAAAACTCAAAAATGTGT 58.584 29.630 0.00 0.00 32.94 3.72
575 576 8.482429 GCTCTATTGAAAACTCAAAAATGTGTG 58.518 33.333 0.00 0.00 32.94 3.82
579 580 4.629200 TGAAAACTCAAAAATGTGTGTGGC 59.371 37.500 0.00 0.00 0.00 5.01
587 589 7.814107 ACTCAAAAATGTGTGTGGCTAATTATG 59.186 33.333 0.00 0.00 0.00 1.90
590 592 7.887996 AAAATGTGTGTGGCTAATTATGTTG 57.112 32.000 0.00 0.00 0.00 3.33
598 600 4.029520 TGGCTAATTATGTTGGTGGCAAT 58.970 39.130 0.00 0.00 0.00 3.56
599 601 4.141981 TGGCTAATTATGTTGGTGGCAATG 60.142 41.667 0.00 0.00 0.00 2.82
602 604 6.282930 GCTAATTATGTTGGTGGCAATGAAT 58.717 36.000 0.00 0.00 0.00 2.57
606 608 7.600231 ATTATGTTGGTGGCAATGAATGATA 57.400 32.000 0.00 0.00 0.00 2.15
609 611 4.710865 TGTTGGTGGCAATGAATGATATGT 59.289 37.500 0.00 0.00 0.00 2.29
610 612 4.922471 TGGTGGCAATGAATGATATGTG 57.078 40.909 0.00 0.00 0.00 3.21
611 613 3.637694 TGGTGGCAATGAATGATATGTGG 59.362 43.478 0.00 0.00 0.00 4.17
612 614 3.638160 GGTGGCAATGAATGATATGTGGT 59.362 43.478 0.00 0.00 0.00 4.16
614 616 5.477984 GGTGGCAATGAATGATATGTGGTAT 59.522 40.000 0.00 0.00 0.00 2.73
616 618 7.148188 GGTGGCAATGAATGATATGTGGTATAG 60.148 40.741 0.00 0.00 0.00 1.31
617 619 7.607607 GTGGCAATGAATGATATGTGGTATAGA 59.392 37.037 0.00 0.00 0.00 1.98
618 620 8.162746 TGGCAATGAATGATATGTGGTATAGAA 58.837 33.333 0.00 0.00 0.00 2.10
619 621 9.182214 GGCAATGAATGATATGTGGTATAGAAT 57.818 33.333 0.00 0.00 0.00 2.40
632 634 9.784531 ATGTGGTATAGAATTGGAAGATAACTG 57.215 33.333 0.00 0.00 0.00 3.16
633 635 7.715249 TGTGGTATAGAATTGGAAGATAACTGC 59.285 37.037 0.00 0.00 0.00 4.40
647 649 4.680237 CTGCCCAACGACCTCGCA 62.680 66.667 0.00 0.00 44.43 5.10
655 657 2.417651 CCAACGACCTCGCACCTTTATA 60.418 50.000 0.00 0.00 44.43 0.98
657 659 3.366440 ACGACCTCGCACCTTTATATC 57.634 47.619 0.00 0.00 44.43 1.63
658 660 2.957006 ACGACCTCGCACCTTTATATCT 59.043 45.455 0.00 0.00 44.43 1.98
659 661 3.243434 ACGACCTCGCACCTTTATATCTG 60.243 47.826 0.00 0.00 44.43 2.90
699 701 3.374402 CCACGGGAGAGTGACGCT 61.374 66.667 0.00 0.00 44.43 5.07
702 704 0.456221 CACGGGAGAGTGACGCTAAT 59.544 55.000 0.00 0.00 44.43 1.73
710 712 6.645415 CGGGAGAGTGACGCTAATTAATATTT 59.355 38.462 0.00 0.00 0.00 1.40
711 713 7.170998 CGGGAGAGTGACGCTAATTAATATTTT 59.829 37.037 0.00 0.00 0.00 1.82
712 714 9.485206 GGGAGAGTGACGCTAATTAATATTTTA 57.515 33.333 0.00 0.00 0.00 1.52
752 779 7.389053 AGCTAATAATGCCAACAGTATAGAAGC 59.611 37.037 0.00 0.00 36.09 3.86
756 783 6.927294 AATGCCAACAGTATAGAAGCTAAC 57.073 37.500 0.00 0.00 0.00 2.34
764 791 2.604046 ATAGAAGCTAACCTGTGGCG 57.396 50.000 0.00 0.00 0.00 5.69
786 824 3.426568 GCAAGGCAGTCAGGTCGC 61.427 66.667 0.00 0.00 0.00 5.19
787 825 2.345244 CAAGGCAGTCAGGTCGCT 59.655 61.111 0.00 0.00 0.00 4.93
789 827 1.302033 AAGGCAGTCAGGTCGCTTG 60.302 57.895 0.00 0.00 0.00 4.01
803 841 0.805322 CGCTTGGTAGCTGAGCAGAG 60.805 60.000 7.39 0.00 45.51 3.35
806 845 0.898320 TTGGTAGCTGAGCAGAGACC 59.102 55.000 7.39 8.97 36.76 3.85
807 846 0.972983 TGGTAGCTGAGCAGAGACCC 60.973 60.000 7.39 0.00 35.22 4.46
860 900 6.584185 AAGGTGACGCCAATTAAGTAAAAT 57.416 33.333 7.99 0.00 40.61 1.82
864 904 8.188139 AGGTGACGCCAATTAAGTAAAATAATG 58.812 33.333 7.99 0.00 40.61 1.90
866 906 7.700656 GTGACGCCAATTAAGTAAAATAATGCT 59.299 33.333 0.00 0.00 0.00 3.79
867 907 8.894731 TGACGCCAATTAAGTAAAATAATGCTA 58.105 29.630 0.00 0.00 0.00 3.49
904 949 3.243068 GCCATGGCACGGTCTATTTAAAG 60.243 47.826 32.08 0.00 41.49 1.85
907 952 2.026636 TGGCACGGTCTATTTAAAGCCT 60.027 45.455 10.92 0.00 41.33 4.58
915 960 4.434520 GTCTATTTAAAGCCTGCTCTCGT 58.565 43.478 0.00 0.00 0.00 4.18
918 963 1.710013 TTAAAGCCTGCTCTCGTTCG 58.290 50.000 0.00 0.00 0.00 3.95
919 964 0.601558 TAAAGCCTGCTCTCGTTCGT 59.398 50.000 0.00 0.00 0.00 3.85
926 971 2.286713 CCTGCTCTCGTTCGTATCAGAG 60.287 54.545 4.90 4.90 36.27 3.35
945 990 5.527951 TCAGAGAGTACGGACATCAGATTAC 59.472 44.000 0.00 0.00 0.00 1.89
1008 1053 2.098298 CGAAGAACAATGGCGGCG 59.902 61.111 0.51 0.51 0.00 6.46
1044 1089 1.002624 GGTTCCCACTGATGCCGAA 60.003 57.895 0.00 0.00 0.00 4.30
1407 1464 2.903357 CCGCACTACATGGAGGCT 59.097 61.111 10.42 0.00 0.00 4.58
1446 1503 1.760613 TGGTTCAAGAAGGACGTCACT 59.239 47.619 18.91 9.30 0.00 3.41
1497 1554 1.173444 ATAGCGCGTCCCTCTTCGAT 61.173 55.000 8.43 0.00 0.00 3.59
1626 1683 0.681564 TCAAGGGGCTCGAGTCTCTC 60.682 60.000 21.97 8.62 24.99 3.20
1702 1759 2.171079 CACGTCAAGTGCACCGTGT 61.171 57.895 27.52 13.12 44.72 4.49
1904 1961 6.647461 TTATATACTACTCGGATCCCTCCA 57.353 41.667 6.06 0.00 42.19 3.86
1908 1965 2.178106 ACTACTCGGATCCCTCCATCTT 59.822 50.000 6.06 0.00 42.19 2.40
1920 1977 6.131972 TCCCTCCATCTTGATAATCCATTC 57.868 41.667 0.00 0.00 0.00 2.67
1936 1993 7.797121 AATCCATTCCTCCAACAAGTATTTT 57.203 32.000 0.00 0.00 0.00 1.82
1939 1996 6.889722 TCCATTCCTCCAACAAGTATTTTAGG 59.110 38.462 0.00 0.00 0.00 2.69
1946 2003 6.761312 TCCAACAAGTATTTTAGGACGAAGA 58.239 36.000 0.00 0.00 0.00 2.87
1951 2008 7.091443 ACAAGTATTTTAGGACGAAGAGAGTG 58.909 38.462 0.00 0.00 0.00 3.51
1972 2029 9.686683 AGAGTGCTAATTTATACTTCACCATTT 57.313 29.630 0.00 0.00 0.00 2.32
2016 2079 6.168389 TCTAAAACTTGTAAACCCTCGGATC 58.832 40.000 0.00 0.00 0.00 3.36
2056 2119 8.674607 ACAGCTTTGGTATAACTTATAAGCAAC 58.325 33.333 12.54 5.64 33.57 4.17
2544 2621 9.594936 TCCAATGAAGAAAAATAAAGGGAGTTA 57.405 29.630 0.00 0.00 0.00 2.24
2557 2637 6.575162 AAAGGGAGTTACTTATGTTTGCAG 57.425 37.500 0.00 0.00 0.00 4.41
2693 2779 8.993121 ACTACAAGAAATATGTCAACTTGTGAG 58.007 33.333 17.23 13.20 46.45 3.51
2700 2786 1.942657 TGTCAACTTGTGAGCTTCTGC 59.057 47.619 0.00 0.00 36.74 4.26
2721 2807 3.423539 CAGTGACCCTGGAAGAAATGA 57.576 47.619 0.00 0.00 37.54 2.57
2793 2879 4.286707 GGCTCCAAACCCTAAACCATAAT 58.713 43.478 0.00 0.00 0.00 1.28
3035 3121 5.306678 TCAATTTTTGCCCTAGGTTGTGAAT 59.693 36.000 8.29 0.00 0.00 2.57
3237 3325 3.645212 TGATTGCCCTCAAACATTTTGGA 59.355 39.130 0.00 0.00 35.56 3.53
3315 3403 8.135529 GCTAGTAAATATTCCTCGGCAAATTTT 58.864 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.541884 TTGTAAGGGGCTCTCTTTAATATTTTT 57.458 29.630 0.00 0.00 0.00 1.94
29 30 9.541884 TTTGTAAGGGGCTCTCTTTAATATTTT 57.458 29.630 0.00 0.00 0.00 1.82
30 31 9.715119 ATTTGTAAGGGGCTCTCTTTAATATTT 57.285 29.630 0.00 0.00 0.00 1.40
31 32 9.136323 CATTTGTAAGGGGCTCTCTTTAATATT 57.864 33.333 0.00 0.00 0.00 1.28
32 33 8.282256 ACATTTGTAAGGGGCTCTCTTTAATAT 58.718 33.333 0.00 0.00 0.00 1.28
33 34 7.639378 ACATTTGTAAGGGGCTCTCTTTAATA 58.361 34.615 0.00 0.00 0.00 0.98
34 35 6.494059 ACATTTGTAAGGGGCTCTCTTTAAT 58.506 36.000 0.00 0.00 0.00 1.40
35 36 5.887754 ACATTTGTAAGGGGCTCTCTTTAA 58.112 37.500 0.00 0.00 0.00 1.52
36 37 5.514500 ACATTTGTAAGGGGCTCTCTTTA 57.486 39.130 0.00 0.00 0.00 1.85
37 38 4.388577 ACATTTGTAAGGGGCTCTCTTT 57.611 40.909 0.00 0.00 0.00 2.52
38 39 4.082125 CAACATTTGTAAGGGGCTCTCTT 58.918 43.478 0.00 0.00 0.00 2.85
39 40 3.074538 ACAACATTTGTAAGGGGCTCTCT 59.925 43.478 0.00 0.00 43.27 3.10
40 41 3.191371 CACAACATTTGTAAGGGGCTCTC 59.809 47.826 0.00 0.00 43.23 3.20
41 42 3.157087 CACAACATTTGTAAGGGGCTCT 58.843 45.455 0.00 0.00 43.23 4.09
42 43 2.352715 GCACAACATTTGTAAGGGGCTC 60.353 50.000 0.00 0.00 43.23 4.70
43 44 1.618343 GCACAACATTTGTAAGGGGCT 59.382 47.619 0.00 0.00 43.23 5.19
44 45 1.618343 AGCACAACATTTGTAAGGGGC 59.382 47.619 0.00 0.00 43.23 5.80
45 46 4.079253 ACTAGCACAACATTTGTAAGGGG 58.921 43.478 0.00 0.00 43.23 4.79
46 47 5.705609 AACTAGCACAACATTTGTAAGGG 57.294 39.130 0.00 0.00 43.23 3.95
47 48 9.691362 AATTTAACTAGCACAACATTTGTAAGG 57.309 29.630 0.00 0.00 43.23 2.69
54 55 9.981114 AGCTTTTAATTTAACTAGCACAACATT 57.019 25.926 17.85 1.51 31.52 2.71
55 56 9.410556 CAGCTTTTAATTTAACTAGCACAACAT 57.589 29.630 17.85 2.00 31.52 2.71
56 57 7.381139 GCAGCTTTTAATTTAACTAGCACAACA 59.619 33.333 17.85 0.00 31.52 3.33
57 58 7.381139 TGCAGCTTTTAATTTAACTAGCACAAC 59.619 33.333 17.85 9.21 31.52 3.32
58 59 7.429633 TGCAGCTTTTAATTTAACTAGCACAA 58.570 30.769 17.85 6.27 31.52 3.33
59 60 6.976088 TGCAGCTTTTAATTTAACTAGCACA 58.024 32.000 17.85 14.11 31.52 4.57
60 61 9.567848 TTATGCAGCTTTTAATTTAACTAGCAC 57.432 29.630 17.85 12.56 31.52 4.40
61 62 9.567848 GTTATGCAGCTTTTAATTTAACTAGCA 57.432 29.630 17.85 11.46 31.52 3.49
62 63 9.788960 AGTTATGCAGCTTTTAATTTAACTAGC 57.211 29.630 11.71 11.71 29.47 3.42
69 70 9.255304 TCGAAAAAGTTATGCAGCTTTTAATTT 57.745 25.926 19.69 9.64 42.33 1.82
70 71 8.810652 TCGAAAAAGTTATGCAGCTTTTAATT 57.189 26.923 19.69 9.89 42.33 1.40
71 72 8.296713 TCTCGAAAAAGTTATGCAGCTTTTAAT 58.703 29.630 19.69 10.40 42.33 1.40
72 73 7.644490 TCTCGAAAAAGTTATGCAGCTTTTAA 58.356 30.769 19.69 11.65 42.33 1.52
73 74 7.041372 ACTCTCGAAAAAGTTATGCAGCTTTTA 60.041 33.333 19.69 9.28 42.33 1.52
74 75 6.072112 TCTCGAAAAAGTTATGCAGCTTTT 57.928 33.333 15.98 15.98 44.24 2.27
75 76 5.239525 ACTCTCGAAAAAGTTATGCAGCTTT 59.760 36.000 7.58 7.58 36.84 3.51
76 77 4.757149 ACTCTCGAAAAAGTTATGCAGCTT 59.243 37.500 0.00 0.00 0.00 3.74
77 78 4.153117 CACTCTCGAAAAAGTTATGCAGCT 59.847 41.667 0.00 0.00 0.00 4.24
78 79 4.152402 TCACTCTCGAAAAAGTTATGCAGC 59.848 41.667 0.00 0.00 0.00 5.25
79 80 5.635280 TCTCACTCTCGAAAAAGTTATGCAG 59.365 40.000 0.00 0.00 0.00 4.41
80 81 5.538118 TCTCACTCTCGAAAAAGTTATGCA 58.462 37.500 0.00 0.00 0.00 3.96
81 82 6.654793 ATCTCACTCTCGAAAAAGTTATGC 57.345 37.500 0.00 0.00 0.00 3.14
82 83 8.499162 ACAAATCTCACTCTCGAAAAAGTTATG 58.501 33.333 0.00 0.00 0.00 1.90
83 84 8.608844 ACAAATCTCACTCTCGAAAAAGTTAT 57.391 30.769 0.00 0.00 0.00 1.89
84 85 9.537192 TTACAAATCTCACTCTCGAAAAAGTTA 57.463 29.630 0.00 0.00 0.00 2.24
85 86 6.927294 ACAAATCTCACTCTCGAAAAAGTT 57.073 33.333 0.00 0.00 0.00 2.66
86 87 7.307455 GCTTACAAATCTCACTCTCGAAAAAGT 60.307 37.037 0.00 0.00 0.00 2.66
87 88 7.012358 GCTTACAAATCTCACTCTCGAAAAAG 58.988 38.462 0.00 0.00 0.00 2.27
88 89 6.073222 GGCTTACAAATCTCACTCTCGAAAAA 60.073 38.462 0.00 0.00 0.00 1.94
89 90 5.408604 GGCTTACAAATCTCACTCTCGAAAA 59.591 40.000 0.00 0.00 0.00 2.29
90 91 4.929808 GGCTTACAAATCTCACTCTCGAAA 59.070 41.667 0.00 0.00 0.00 3.46
91 92 4.220821 AGGCTTACAAATCTCACTCTCGAA 59.779 41.667 0.00 0.00 0.00 3.71
92 93 3.764434 AGGCTTACAAATCTCACTCTCGA 59.236 43.478 0.00 0.00 0.00 4.04
93 94 4.116747 AGGCTTACAAATCTCACTCTCG 57.883 45.455 0.00 0.00 0.00 4.04
94 95 5.465056 GCATAGGCTTACAAATCTCACTCTC 59.535 44.000 0.00 0.00 36.96 3.20
95 96 5.363939 GCATAGGCTTACAAATCTCACTCT 58.636 41.667 0.00 0.00 36.96 3.24
96 97 5.665381 GCATAGGCTTACAAATCTCACTC 57.335 43.478 0.00 0.00 36.96 3.51
106 107 7.234371 AGATAAGAATCTGAGCATAGGCTTACA 59.766 37.037 2.16 0.00 44.00 2.41
107 108 7.610865 AGATAAGAATCTGAGCATAGGCTTAC 58.389 38.462 2.16 0.00 44.00 2.34
108 109 7.789202 AGATAAGAATCTGAGCATAGGCTTA 57.211 36.000 2.16 0.00 44.00 3.09
109 110 6.684897 AGATAAGAATCTGAGCATAGGCTT 57.315 37.500 2.16 0.00 44.00 4.35
121 122 5.643421 ATGGCCAAGACAGATAAGAATCT 57.357 39.130 10.96 0.00 43.54 2.40
122 123 5.009410 CCAATGGCCAAGACAGATAAGAATC 59.991 44.000 10.96 0.00 0.00 2.52
123 124 4.891756 CCAATGGCCAAGACAGATAAGAAT 59.108 41.667 10.96 0.00 0.00 2.40
124 125 4.263905 ACCAATGGCCAAGACAGATAAGAA 60.264 41.667 10.96 0.00 0.00 2.52
125 126 3.266772 ACCAATGGCCAAGACAGATAAGA 59.733 43.478 10.96 0.00 0.00 2.10
126 127 3.624777 ACCAATGGCCAAGACAGATAAG 58.375 45.455 10.96 0.00 0.00 1.73
127 128 3.737559 ACCAATGGCCAAGACAGATAA 57.262 42.857 10.96 0.00 0.00 1.75
128 129 3.620488 GAACCAATGGCCAAGACAGATA 58.380 45.455 10.96 0.00 0.00 1.98
129 130 2.450476 GAACCAATGGCCAAGACAGAT 58.550 47.619 10.96 0.00 0.00 2.90
130 131 1.881925 CGAACCAATGGCCAAGACAGA 60.882 52.381 10.96 0.00 0.00 3.41
131 132 0.523072 CGAACCAATGGCCAAGACAG 59.477 55.000 10.96 0.00 0.00 3.51
132 133 0.893270 CCGAACCAATGGCCAAGACA 60.893 55.000 10.96 0.00 0.00 3.41
133 134 0.893727 ACCGAACCAATGGCCAAGAC 60.894 55.000 10.96 0.00 0.00 3.01
134 135 0.178975 AACCGAACCAATGGCCAAGA 60.179 50.000 10.96 0.00 0.00 3.02
135 136 0.678950 AAACCGAACCAATGGCCAAG 59.321 50.000 10.96 5.36 0.00 3.61
136 137 0.390860 CAAACCGAACCAATGGCCAA 59.609 50.000 10.96 0.00 0.00 4.52
137 138 1.467678 CCAAACCGAACCAATGGCCA 61.468 55.000 8.56 8.56 0.00 5.36
138 139 1.182385 TCCAAACCGAACCAATGGCC 61.182 55.000 0.00 0.00 0.00 5.36
139 140 0.894835 ATCCAAACCGAACCAATGGC 59.105 50.000 0.00 0.00 0.00 4.40
140 141 2.423538 GAGATCCAAACCGAACCAATGG 59.576 50.000 0.00 0.00 0.00 3.16
141 142 2.095853 CGAGATCCAAACCGAACCAATG 59.904 50.000 0.00 0.00 0.00 2.82
142 143 2.027561 TCGAGATCCAAACCGAACCAAT 60.028 45.455 0.00 0.00 0.00 3.16
143 144 1.345089 TCGAGATCCAAACCGAACCAA 59.655 47.619 0.00 0.00 0.00 3.67
144 145 0.970640 TCGAGATCCAAACCGAACCA 59.029 50.000 0.00 0.00 0.00 3.67
145 146 1.337447 TGTCGAGATCCAAACCGAACC 60.337 52.381 0.00 0.00 32.60 3.62
146 147 1.993370 CTGTCGAGATCCAAACCGAAC 59.007 52.381 0.00 0.00 32.60 3.95
147 148 1.890489 TCTGTCGAGATCCAAACCGAA 59.110 47.619 0.00 0.00 32.60 4.30
148 149 1.541379 TCTGTCGAGATCCAAACCGA 58.459 50.000 0.00 0.00 0.00 4.69
149 150 2.363788 TTCTGTCGAGATCCAAACCG 57.636 50.000 0.00 0.00 0.00 4.44
150 151 6.371825 ACTTTAATTCTGTCGAGATCCAAACC 59.628 38.462 0.00 0.00 0.00 3.27
151 152 7.237173 CACTTTAATTCTGTCGAGATCCAAAC 58.763 38.462 0.00 0.00 0.00 2.93
152 153 6.371548 CCACTTTAATTCTGTCGAGATCCAAA 59.628 38.462 0.00 0.00 0.00 3.28
153 154 5.874810 CCACTTTAATTCTGTCGAGATCCAA 59.125 40.000 0.00 0.00 0.00 3.53
154 155 5.419542 CCACTTTAATTCTGTCGAGATCCA 58.580 41.667 0.00 0.00 0.00 3.41
155 156 4.811557 CCCACTTTAATTCTGTCGAGATCC 59.188 45.833 0.00 0.00 0.00 3.36
156 157 5.420409 ACCCACTTTAATTCTGTCGAGATC 58.580 41.667 0.00 0.00 0.00 2.75
157 158 5.422214 ACCCACTTTAATTCTGTCGAGAT 57.578 39.130 0.00 0.00 0.00 2.75
158 159 4.884668 ACCCACTTTAATTCTGTCGAGA 57.115 40.909 0.00 0.00 0.00 4.04
159 160 4.868734 GGTACCCACTTTAATTCTGTCGAG 59.131 45.833 0.00 0.00 0.00 4.04
160 161 4.283978 TGGTACCCACTTTAATTCTGTCGA 59.716 41.667 10.07 0.00 0.00 4.20
161 162 4.571919 TGGTACCCACTTTAATTCTGTCG 58.428 43.478 10.07 0.00 0.00 4.35
175 176 1.076350 CCAAAATCCCAGTGGTACCCA 59.924 52.381 10.07 0.00 0.00 4.51
176 177 1.076513 ACCAAAATCCCAGTGGTACCC 59.923 52.381 10.07 0.32 43.90 3.69
177 178 2.560981 CAACCAAAATCCCAGTGGTACC 59.439 50.000 8.74 4.43 44.99 3.34
178 179 3.492337 TCAACCAAAATCCCAGTGGTAC 58.508 45.455 8.74 0.00 44.99 3.34
179 180 3.885976 TCAACCAAAATCCCAGTGGTA 57.114 42.857 8.74 0.00 44.99 3.25
181 182 2.965147 ACTTCAACCAAAATCCCAGTGG 59.035 45.455 0.63 0.63 38.46 4.00
182 183 3.636300 TGACTTCAACCAAAATCCCAGTG 59.364 43.478 0.00 0.00 0.00 3.66
183 184 3.909732 TGACTTCAACCAAAATCCCAGT 58.090 40.909 0.00 0.00 0.00 4.00
184 185 4.935352 TTGACTTCAACCAAAATCCCAG 57.065 40.909 0.00 0.00 0.00 4.45
185 186 5.885449 AATTGACTTCAACCAAAATCCCA 57.115 34.783 0.00 0.00 38.86 4.37
186 187 8.147704 TCTAAAATTGACTTCAACCAAAATCCC 58.852 33.333 0.00 0.00 38.86 3.85
187 188 8.978539 GTCTAAAATTGACTTCAACCAAAATCC 58.021 33.333 0.00 0.00 38.86 3.01
188 189 9.528018 TGTCTAAAATTGACTTCAACCAAAATC 57.472 29.630 0.00 0.00 38.86 2.17
190 191 9.883142 AATGTCTAAAATTGACTTCAACCAAAA 57.117 25.926 0.00 0.00 38.86 2.44
191 192 9.528018 GAATGTCTAAAATTGACTTCAACCAAA 57.472 29.630 0.00 0.00 38.86 3.28
192 193 8.690884 TGAATGTCTAAAATTGACTTCAACCAA 58.309 29.630 0.00 0.00 38.86 3.67
193 194 8.231692 TGAATGTCTAAAATTGACTTCAACCA 57.768 30.769 0.00 0.00 38.86 3.67
194 195 9.185192 CTTGAATGTCTAAAATTGACTTCAACC 57.815 33.333 12.58 0.00 38.86 3.77
195 196 9.950680 TCTTGAATGTCTAAAATTGACTTCAAC 57.049 29.630 12.58 0.00 38.86 3.18
197 198 9.950680 GTTCTTGAATGTCTAAAATTGACTTCA 57.049 29.630 0.00 0.00 35.63 3.02
198 199 9.107367 CGTTCTTGAATGTCTAAAATTGACTTC 57.893 33.333 0.00 0.00 35.63 3.01
199 200 8.836413 TCGTTCTTGAATGTCTAAAATTGACTT 58.164 29.630 2.97 0.00 35.63 3.01
200 201 8.283291 GTCGTTCTTGAATGTCTAAAATTGACT 58.717 33.333 2.97 0.00 35.63 3.41
201 202 8.067784 TGTCGTTCTTGAATGTCTAAAATTGAC 58.932 33.333 2.97 0.00 35.21 3.18
202 203 8.148807 TGTCGTTCTTGAATGTCTAAAATTGA 57.851 30.769 2.97 0.00 0.00 2.57
203 204 8.955061 ATGTCGTTCTTGAATGTCTAAAATTG 57.045 30.769 2.97 0.00 0.00 2.32
206 207 8.227791 GCTTATGTCGTTCTTGAATGTCTAAAA 58.772 33.333 2.97 0.00 0.00 1.52
207 208 7.602644 AGCTTATGTCGTTCTTGAATGTCTAAA 59.397 33.333 2.97 0.00 0.00 1.85
208 209 7.097192 AGCTTATGTCGTTCTTGAATGTCTAA 58.903 34.615 2.97 0.78 0.00 2.10
209 210 6.631016 AGCTTATGTCGTTCTTGAATGTCTA 58.369 36.000 2.97 0.00 0.00 2.59
210 211 5.482908 AGCTTATGTCGTTCTTGAATGTCT 58.517 37.500 2.97 0.00 0.00 3.41
211 212 5.786401 AGCTTATGTCGTTCTTGAATGTC 57.214 39.130 2.97 0.00 0.00 3.06
212 213 9.547753 AATATAGCTTATGTCGTTCTTGAATGT 57.452 29.630 0.00 0.00 0.00 2.71
216 217 9.817809 AGAAAATATAGCTTATGTCGTTCTTGA 57.182 29.630 0.00 0.00 0.00 3.02
218 219 9.817809 TGAGAAAATATAGCTTATGTCGTTCTT 57.182 29.630 0.00 0.00 0.00 2.52
219 220 9.817809 TTGAGAAAATATAGCTTATGTCGTTCT 57.182 29.630 0.00 0.00 0.00 3.01
220 221 9.851043 GTTGAGAAAATATAGCTTATGTCGTTC 57.149 33.333 0.00 0.00 0.00 3.95
221 222 9.601217 AGTTGAGAAAATATAGCTTATGTCGTT 57.399 29.630 0.00 0.00 0.00 3.85
222 223 9.601217 AAGTTGAGAAAATATAGCTTATGTCGT 57.399 29.630 0.00 0.00 0.00 4.34
228 229 9.019656 TGGCAAAAGTTGAGAAAATATAGCTTA 57.980 29.630 0.00 0.00 0.00 3.09
229 230 7.895759 TGGCAAAAGTTGAGAAAATATAGCTT 58.104 30.769 0.00 0.00 0.00 3.74
230 231 7.466746 TGGCAAAAGTTGAGAAAATATAGCT 57.533 32.000 0.00 0.00 0.00 3.32
231 232 9.971922 ATATGGCAAAAGTTGAGAAAATATAGC 57.028 29.630 0.00 0.00 0.00 2.97
236 237 8.815912 AGGTAATATGGCAAAAGTTGAGAAAAT 58.184 29.630 0.00 0.00 0.00 1.82
237 238 8.189119 AGGTAATATGGCAAAAGTTGAGAAAA 57.811 30.769 0.00 0.00 0.00 2.29
238 239 7.775053 AGGTAATATGGCAAAAGTTGAGAAA 57.225 32.000 0.00 0.00 0.00 2.52
239 240 7.556275 CCTAGGTAATATGGCAAAAGTTGAGAA 59.444 37.037 0.00 0.00 0.00 2.87
240 241 7.054124 CCTAGGTAATATGGCAAAAGTTGAGA 58.946 38.462 0.00 0.00 0.00 3.27
241 242 6.263168 CCCTAGGTAATATGGCAAAAGTTGAG 59.737 42.308 8.29 0.00 0.00 3.02
242 243 6.126409 CCCTAGGTAATATGGCAAAAGTTGA 58.874 40.000 8.29 0.00 0.00 3.18
243 244 5.221244 GCCCTAGGTAATATGGCAAAAGTTG 60.221 44.000 8.29 0.00 42.91 3.16
244 245 4.893524 GCCCTAGGTAATATGGCAAAAGTT 59.106 41.667 8.29 0.00 42.91 2.66
245 246 4.470602 GCCCTAGGTAATATGGCAAAAGT 58.529 43.478 8.29 0.00 42.91 2.66
246 247 3.826729 GGCCCTAGGTAATATGGCAAAAG 59.173 47.826 8.29 0.00 44.63 2.27
247 248 3.465588 AGGCCCTAGGTAATATGGCAAAA 59.534 43.478 8.29 0.00 44.63 2.44
248 249 3.060611 AGGCCCTAGGTAATATGGCAAA 58.939 45.455 8.29 0.00 44.63 3.68
249 250 2.713595 AGGCCCTAGGTAATATGGCAA 58.286 47.619 8.29 0.00 44.63 4.52
250 251 2.433444 AGGCCCTAGGTAATATGGCA 57.567 50.000 8.29 0.00 44.63 4.92
251 252 2.772515 CCTAGGCCCTAGGTAATATGGC 59.227 54.545 26.34 3.36 46.15 4.40
261 262 2.975489 ACATTCATGTCCTAGGCCCTAG 59.025 50.000 11.08 11.08 35.87 3.02
262 263 3.060479 ACATTCATGTCCTAGGCCCTA 57.940 47.619 2.96 0.00 35.87 3.53
263 264 1.898863 ACATTCATGTCCTAGGCCCT 58.101 50.000 2.96 0.00 35.87 5.19
264 265 2.736670 AACATTCATGTCCTAGGCCC 57.263 50.000 2.96 0.00 40.80 5.80
265 266 3.381590 GGAAAACATTCATGTCCTAGGCC 59.618 47.826 2.96 0.00 40.80 5.19
266 267 3.381590 GGGAAAACATTCATGTCCTAGGC 59.618 47.826 2.96 0.00 40.80 3.93
267 268 3.627577 CGGGAAAACATTCATGTCCTAGG 59.372 47.826 0.82 0.82 40.80 3.02
268 269 3.627577 CCGGGAAAACATTCATGTCCTAG 59.372 47.826 0.00 0.00 40.80 3.02
269 270 3.009695 ACCGGGAAAACATTCATGTCCTA 59.990 43.478 6.32 0.00 40.80 2.94
270 271 2.225017 ACCGGGAAAACATTCATGTCCT 60.225 45.455 6.32 0.00 40.80 3.85
271 272 2.163613 GACCGGGAAAACATTCATGTCC 59.836 50.000 6.32 0.00 40.80 4.02
272 273 2.817258 TGACCGGGAAAACATTCATGTC 59.183 45.455 6.32 0.00 40.80 3.06
273 274 2.870175 TGACCGGGAAAACATTCATGT 58.130 42.857 6.32 0.00 44.20 3.21
274 275 3.443329 TGATGACCGGGAAAACATTCATG 59.557 43.478 6.32 0.00 0.00 3.07
275 276 3.696045 TGATGACCGGGAAAACATTCAT 58.304 40.909 6.32 2.52 0.00 2.57
276 277 3.147553 TGATGACCGGGAAAACATTCA 57.852 42.857 6.32 0.00 0.00 2.57
277 278 4.234574 GTTTGATGACCGGGAAAACATTC 58.765 43.478 6.32 0.00 32.34 2.67
278 279 3.639094 TGTTTGATGACCGGGAAAACATT 59.361 39.130 6.32 0.00 36.20 2.71
279 280 3.226777 TGTTTGATGACCGGGAAAACAT 58.773 40.909 6.32 3.15 36.20 2.71
280 281 2.656002 TGTTTGATGACCGGGAAAACA 58.344 42.857 6.32 11.83 38.15 2.83
281 282 3.719173 TTGTTTGATGACCGGGAAAAC 57.281 42.857 6.32 9.34 0.00 2.43
282 283 3.639094 ACATTGTTTGATGACCGGGAAAA 59.361 39.130 6.32 0.00 0.00 2.29
283 284 3.226777 ACATTGTTTGATGACCGGGAAA 58.773 40.909 6.32 0.00 0.00 3.13
284 285 2.870175 ACATTGTTTGATGACCGGGAA 58.130 42.857 6.32 0.00 0.00 3.97
285 286 2.577606 ACATTGTTTGATGACCGGGA 57.422 45.000 6.32 0.00 0.00 5.14
286 287 3.574614 GAAACATTGTTTGATGACCGGG 58.425 45.455 19.03 0.00 0.00 5.73
287 288 3.058570 TCGAAACATTGTTTGATGACCGG 60.059 43.478 19.03 0.00 0.00 5.28
288 289 4.140518 TCGAAACATTGTTTGATGACCG 57.859 40.909 19.03 14.22 0.00 4.79
289 290 5.698832 TGATCGAAACATTGTTTGATGACC 58.301 37.500 19.03 6.38 32.70 4.02
290 291 7.621832 TTTGATCGAAACATTGTTTGATGAC 57.378 32.000 19.03 10.98 32.70 3.06
291 292 9.558648 CTATTTGATCGAAACATTGTTTGATGA 57.441 29.630 19.03 13.46 32.70 2.92
292 293 8.800972 CCTATTTGATCGAAACATTGTTTGATG 58.199 33.333 19.03 8.98 32.70 3.07
293 294 7.489113 GCCTATTTGATCGAAACATTGTTTGAT 59.511 33.333 19.03 18.79 34.83 2.57
294 295 6.806249 GCCTATTTGATCGAAACATTGTTTGA 59.194 34.615 19.03 15.52 0.00 2.69
295 296 6.237279 CGCCTATTTGATCGAAACATTGTTTG 60.237 38.462 19.03 11.29 0.00 2.93
296 297 5.799936 CGCCTATTTGATCGAAACATTGTTT 59.200 36.000 14.42 14.42 0.00 2.83
297 298 5.331902 CGCCTATTTGATCGAAACATTGTT 58.668 37.500 0.00 0.00 0.00 2.83
298 299 4.730613 GCGCCTATTTGATCGAAACATTGT 60.731 41.667 0.00 0.00 0.00 2.71
299 300 3.725740 GCGCCTATTTGATCGAAACATTG 59.274 43.478 0.00 0.00 0.00 2.82
300 301 3.243068 GGCGCCTATTTGATCGAAACATT 60.243 43.478 22.15 0.00 0.00 2.71
301 302 2.290641 GGCGCCTATTTGATCGAAACAT 59.709 45.455 22.15 0.00 0.00 2.71
302 303 1.668751 GGCGCCTATTTGATCGAAACA 59.331 47.619 22.15 0.00 0.00 2.83
303 304 1.940613 AGGCGCCTATTTGATCGAAAC 59.059 47.619 31.86 0.00 0.00 2.78
304 305 2.210116 GAGGCGCCTATTTGATCGAAA 58.790 47.619 32.97 0.00 0.00 3.46
305 306 1.865865 GAGGCGCCTATTTGATCGAA 58.134 50.000 32.97 0.00 0.00 3.71
306 307 0.318699 CGAGGCGCCTATTTGATCGA 60.319 55.000 32.97 0.00 0.00 3.59
307 308 2.145225 CGAGGCGCCTATTTGATCG 58.855 57.895 32.97 23.21 0.00 3.69
319 320 1.651987 TCCTTTGAATTAGCGAGGCG 58.348 50.000 0.00 0.00 0.00 5.52
320 321 4.639135 AAATCCTTTGAATTAGCGAGGC 57.361 40.909 0.00 0.00 0.00 4.70
321 322 6.620678 TGAAAAATCCTTTGAATTAGCGAGG 58.379 36.000 0.00 0.00 0.00 4.63
322 323 9.443283 CTATGAAAAATCCTTTGAATTAGCGAG 57.557 33.333 0.00 0.00 0.00 5.03
323 324 8.405531 CCTATGAAAAATCCTTTGAATTAGCGA 58.594 33.333 0.00 0.00 0.00 4.93
324 325 8.405531 TCCTATGAAAAATCCTTTGAATTAGCG 58.594 33.333 0.00 0.00 0.00 4.26
334 335 9.948964 CCTTCAAAATTCCTATGAAAAATCCTT 57.051 29.630 0.00 0.00 33.08 3.36
335 336 9.325248 TCCTTCAAAATTCCTATGAAAAATCCT 57.675 29.630 0.00 0.00 33.08 3.24
336 337 9.371136 GTCCTTCAAAATTCCTATGAAAAATCC 57.629 33.333 0.00 0.00 33.08 3.01
342 343 9.449719 GTTCTAGTCCTTCAAAATTCCTATGAA 57.550 33.333 0.00 0.00 34.33 2.57
343 344 8.047310 GGTTCTAGTCCTTCAAAATTCCTATGA 58.953 37.037 0.00 0.00 0.00 2.15
344 345 8.049721 AGGTTCTAGTCCTTCAAAATTCCTATG 58.950 37.037 3.98 0.00 30.18 2.23
345 346 8.164057 AGGTTCTAGTCCTTCAAAATTCCTAT 57.836 34.615 3.98 0.00 30.18 2.57
346 347 7.458170 AGAGGTTCTAGTCCTTCAAAATTCCTA 59.542 37.037 9.76 0.00 35.20 2.94
347 348 6.273495 AGAGGTTCTAGTCCTTCAAAATTCCT 59.727 38.462 9.76 0.00 35.20 3.36
348 349 6.477253 AGAGGTTCTAGTCCTTCAAAATTCC 58.523 40.000 9.76 0.00 35.20 3.01
349 350 6.596106 GGAGAGGTTCTAGTCCTTCAAAATTC 59.404 42.308 9.76 0.00 35.20 2.17
350 351 6.044404 TGGAGAGGTTCTAGTCCTTCAAAATT 59.956 38.462 9.76 0.00 35.20 1.82
351 352 5.548056 TGGAGAGGTTCTAGTCCTTCAAAAT 59.452 40.000 9.76 0.00 35.20 1.82
352 353 4.905456 TGGAGAGGTTCTAGTCCTTCAAAA 59.095 41.667 9.76 0.00 35.20 2.44
353 354 4.489737 TGGAGAGGTTCTAGTCCTTCAAA 58.510 43.478 9.76 0.00 35.20 2.69
354 355 4.090090 CTGGAGAGGTTCTAGTCCTTCAA 58.910 47.826 9.76 4.43 35.20 2.69
355 356 3.333980 TCTGGAGAGGTTCTAGTCCTTCA 59.666 47.826 9.76 8.41 35.95 3.02
356 357 3.970842 TCTGGAGAGGTTCTAGTCCTTC 58.029 50.000 9.76 9.09 35.95 3.46
357 358 4.618378 ATCTGGAGAGGTTCTAGTCCTT 57.382 45.455 9.76 2.58 35.95 3.36
358 359 4.618378 AATCTGGAGAGGTTCTAGTCCT 57.382 45.455 8.51 8.51 35.95 3.85
359 360 4.959839 AGAAATCTGGAGAGGTTCTAGTCC 59.040 45.833 4.35 0.00 35.95 3.85
360 361 5.681179 GCAGAAATCTGGAGAGGTTCTAGTC 60.681 48.000 12.09 0.00 43.94 2.59
361 362 4.161377 GCAGAAATCTGGAGAGGTTCTAGT 59.839 45.833 12.09 0.00 43.94 2.57
362 363 4.405358 AGCAGAAATCTGGAGAGGTTCTAG 59.595 45.833 12.09 0.00 43.94 2.43
363 364 4.161189 CAGCAGAAATCTGGAGAGGTTCTA 59.839 45.833 12.09 0.00 43.94 2.10
364 365 3.055240 CAGCAGAAATCTGGAGAGGTTCT 60.055 47.826 12.09 0.00 43.94 3.01
365 366 3.055530 TCAGCAGAAATCTGGAGAGGTTC 60.056 47.826 12.09 0.00 43.94 3.62
366 367 2.909006 TCAGCAGAAATCTGGAGAGGTT 59.091 45.455 12.09 0.00 43.94 3.50
367 368 2.544721 TCAGCAGAAATCTGGAGAGGT 58.455 47.619 12.09 0.00 43.94 3.85
368 369 3.134262 TGATCAGCAGAAATCTGGAGAGG 59.866 47.826 12.09 0.00 43.94 3.69
369 370 4.403585 TGATCAGCAGAAATCTGGAGAG 57.596 45.455 12.09 0.00 43.94 3.20
370 371 5.369409 AATGATCAGCAGAAATCTGGAGA 57.631 39.130 12.09 0.00 43.94 3.71
371 372 5.589050 TCAAATGATCAGCAGAAATCTGGAG 59.411 40.000 12.09 0.00 43.94 3.86
372 373 5.503002 TCAAATGATCAGCAGAAATCTGGA 58.497 37.500 12.09 2.67 43.94 3.86
373 374 5.830000 TCAAATGATCAGCAGAAATCTGG 57.170 39.130 12.09 0.00 43.94 3.86
374 375 7.222805 CCAAATCAAATGATCAGCAGAAATCTG 59.777 37.037 0.09 6.05 39.26 2.90
375 376 7.123697 TCCAAATCAAATGATCAGCAGAAATCT 59.876 33.333 0.09 0.00 32.75 2.40
376 377 7.262772 TCCAAATCAAATGATCAGCAGAAATC 58.737 34.615 0.09 0.00 32.75 2.17
377 378 7.177832 TCCAAATCAAATGATCAGCAGAAAT 57.822 32.000 0.09 0.00 32.75 2.17
378 379 6.350696 CCTCCAAATCAAATGATCAGCAGAAA 60.351 38.462 0.09 0.00 32.75 2.52
379 380 5.126545 CCTCCAAATCAAATGATCAGCAGAA 59.873 40.000 0.09 0.00 32.75 3.02
380 381 4.643334 CCTCCAAATCAAATGATCAGCAGA 59.357 41.667 0.09 0.00 32.75 4.26
381 382 4.736759 GCCTCCAAATCAAATGATCAGCAG 60.737 45.833 0.09 0.00 32.75 4.24
382 383 3.131577 GCCTCCAAATCAAATGATCAGCA 59.868 43.478 0.09 0.00 32.75 4.41
383 384 3.383825 AGCCTCCAAATCAAATGATCAGC 59.616 43.478 0.09 0.00 32.75 4.26
384 385 5.126545 TCAAGCCTCCAAATCAAATGATCAG 59.873 40.000 0.09 0.00 32.75 2.90
385 386 5.018149 TCAAGCCTCCAAATCAAATGATCA 58.982 37.500 0.00 0.00 32.75 2.92
386 387 5.587388 TCAAGCCTCCAAATCAAATGATC 57.413 39.130 0.00 0.00 32.75 2.92
387 388 6.555463 ATTCAAGCCTCCAAATCAAATGAT 57.445 33.333 0.00 0.00 36.07 2.45
388 389 6.363167 AATTCAAGCCTCCAAATCAAATGA 57.637 33.333 0.00 0.00 0.00 2.57
389 390 5.583457 GGAATTCAAGCCTCCAAATCAAATG 59.417 40.000 7.93 0.00 0.00 2.32
390 391 5.248934 TGGAATTCAAGCCTCCAAATCAAAT 59.751 36.000 7.93 0.00 36.30 2.32
391 392 4.592351 TGGAATTCAAGCCTCCAAATCAAA 59.408 37.500 7.93 0.00 36.30 2.69
392 393 4.158786 TGGAATTCAAGCCTCCAAATCAA 58.841 39.130 7.93 0.00 36.30 2.57
393 394 3.777087 TGGAATTCAAGCCTCCAAATCA 58.223 40.909 7.93 0.00 36.30 2.57
394 395 5.829924 TCTATGGAATTCAAGCCTCCAAATC 59.170 40.000 7.93 0.00 42.41 2.17
395 396 5.769835 TCTATGGAATTCAAGCCTCCAAAT 58.230 37.500 7.93 0.00 42.41 2.32
396 397 5.191727 TCTATGGAATTCAAGCCTCCAAA 57.808 39.130 7.93 0.00 42.41 3.28
397 398 4.860802 TCTATGGAATTCAAGCCTCCAA 57.139 40.909 7.93 0.00 42.41 3.53
398 399 4.860802 TTCTATGGAATTCAAGCCTCCA 57.139 40.909 7.93 0.00 43.26 3.86
399 400 6.721704 AATTTCTATGGAATTCAAGCCTCC 57.278 37.500 7.93 0.00 0.00 4.30
400 401 9.091784 GAAAAATTTCTATGGAATTCAAGCCTC 57.908 33.333 7.93 0.00 34.41 4.70
401 402 8.819845 AGAAAAATTTCTATGGAATTCAAGCCT 58.180 29.630 7.93 0.00 45.17 4.58
402 403 9.440773 AAGAAAAATTTCTATGGAATTCAAGCC 57.559 29.630 7.93 0.00 46.22 4.35
425 426 9.739276 ACTGGAAACACAAATGATTCTATAAGA 57.261 29.630 0.00 0.00 37.66 2.10
428 429 9.295825 ACAACTGGAAACACAAATGATTCTATA 57.704 29.630 0.00 0.00 37.66 1.31
429 430 8.181904 ACAACTGGAAACACAAATGATTCTAT 57.818 30.769 0.00 0.00 37.66 1.98
430 431 7.284261 TGACAACTGGAAACACAAATGATTCTA 59.716 33.333 0.00 0.00 37.66 2.10
431 432 6.096705 TGACAACTGGAAACACAAATGATTCT 59.903 34.615 0.00 0.00 37.66 2.40
432 433 6.272318 TGACAACTGGAAACACAAATGATTC 58.728 36.000 0.00 0.00 37.00 2.52
433 434 6.219417 TGACAACTGGAAACACAAATGATT 57.781 33.333 0.00 0.00 35.60 2.57
434 435 5.850557 TGACAACTGGAAACACAAATGAT 57.149 34.783 0.00 0.00 35.60 2.45
435 436 5.359292 TCATGACAACTGGAAACACAAATGA 59.641 36.000 0.00 0.00 35.60 2.57
436 437 5.459762 GTCATGACAACTGGAAACACAAATG 59.540 40.000 21.07 0.00 35.60 2.32
437 438 5.126869 TGTCATGACAACTGGAAACACAAAT 59.873 36.000 26.02 0.00 38.56 2.32
438 439 4.460731 TGTCATGACAACTGGAAACACAAA 59.539 37.500 26.02 0.00 38.56 2.83
439 440 4.013050 TGTCATGACAACTGGAAACACAA 58.987 39.130 26.02 0.00 38.56 3.33
440 441 3.615155 TGTCATGACAACTGGAAACACA 58.385 40.909 26.02 0.00 38.56 3.72
441 442 4.836125 ATGTCATGACAACTGGAAACAC 57.164 40.909 31.00 0.00 45.41 3.32
442 443 4.278170 GGAATGTCATGACAACTGGAAACA 59.722 41.667 31.00 5.82 45.41 2.83
443 444 4.278170 TGGAATGTCATGACAACTGGAAAC 59.722 41.667 31.00 15.55 45.41 2.78
444 445 4.468713 TGGAATGTCATGACAACTGGAAA 58.531 39.130 31.00 11.40 45.41 3.13
445 446 4.097551 TGGAATGTCATGACAACTGGAA 57.902 40.909 31.00 12.88 45.41 3.53
446 447 3.786368 TGGAATGTCATGACAACTGGA 57.214 42.857 31.00 12.38 45.41 3.86
447 448 3.822735 AGTTGGAATGTCATGACAACTGG 59.177 43.478 31.00 0.00 46.91 4.00
450 451 7.370383 ACAAATAGTTGGAATGTCATGACAAC 58.630 34.615 31.00 25.01 40.93 3.32
451 452 7.523293 ACAAATAGTTGGAATGTCATGACAA 57.477 32.000 31.00 13.12 40.93 3.18
452 453 7.523293 AACAAATAGTTGGAATGTCATGACA 57.477 32.000 29.67 29.67 41.69 3.58
453 454 8.816640 AAAACAAATAGTTGGAATGTCATGAC 57.183 30.769 19.27 19.27 41.19 3.06
454 455 9.474920 GAAAAACAAATAGTTGGAATGTCATGA 57.525 29.630 7.93 0.00 41.19 3.07
455 456 8.711457 GGAAAAACAAATAGTTGGAATGTCATG 58.289 33.333 7.93 0.00 41.19 3.07
456 457 8.650490 AGGAAAAACAAATAGTTGGAATGTCAT 58.350 29.630 7.93 0.00 41.19 3.06
457 458 8.017418 AGGAAAAACAAATAGTTGGAATGTCA 57.983 30.769 7.93 0.00 41.19 3.58
464 465 9.981114 ACAGAAATAGGAAAAACAAATAGTTGG 57.019 29.630 7.93 0.00 41.19 3.77
477 478 9.255304 GCATTGTAAAAACACAGAAATAGGAAA 57.745 29.630 0.00 0.00 0.00 3.13
478 479 8.637986 AGCATTGTAAAAACACAGAAATAGGAA 58.362 29.630 0.00 0.00 0.00 3.36
479 480 8.177119 AGCATTGTAAAAACACAGAAATAGGA 57.823 30.769 0.00 0.00 0.00 2.94
483 484 9.979578 TTCATAGCATTGTAAAAACACAGAAAT 57.020 25.926 0.00 0.00 0.00 2.17
484 485 9.979578 ATTCATAGCATTGTAAAAACACAGAAA 57.020 25.926 0.00 0.00 0.00 2.52
485 486 9.624697 GATTCATAGCATTGTAAAAACACAGAA 57.375 29.630 0.00 0.00 0.00 3.02
486 487 8.791675 TGATTCATAGCATTGTAAAAACACAGA 58.208 29.630 0.00 0.00 0.00 3.41
487 488 8.969121 TGATTCATAGCATTGTAAAAACACAG 57.031 30.769 0.00 0.00 0.00 3.66
488 489 9.926158 ATTGATTCATAGCATTGTAAAAACACA 57.074 25.926 0.00 0.00 0.00 3.72
490 491 9.926158 ACATTGATTCATAGCATTGTAAAAACA 57.074 25.926 0.00 0.00 33.82 2.83
492 493 9.368674 CCACATTGATTCATAGCATTGTAAAAA 57.631 29.630 0.00 0.00 33.82 1.94
493 494 7.492020 GCCACATTGATTCATAGCATTGTAAAA 59.508 33.333 0.00 0.00 33.82 1.52
494 495 6.979817 GCCACATTGATTCATAGCATTGTAAA 59.020 34.615 0.00 0.00 33.82 2.01
495 496 6.461370 GGCCACATTGATTCATAGCATTGTAA 60.461 38.462 0.00 0.00 33.82 2.41
496 497 5.009911 GGCCACATTGATTCATAGCATTGTA 59.990 40.000 0.00 0.00 33.82 2.41
497 498 4.202182 GGCCACATTGATTCATAGCATTGT 60.202 41.667 0.00 0.00 35.37 2.71
498 499 4.304110 GGCCACATTGATTCATAGCATTG 58.696 43.478 0.00 0.00 0.00 2.82
499 500 3.322828 GGGCCACATTGATTCATAGCATT 59.677 43.478 4.39 0.00 0.00 3.56
500 501 2.895404 GGGCCACATTGATTCATAGCAT 59.105 45.455 4.39 0.00 0.00 3.79
501 502 2.091720 AGGGCCACATTGATTCATAGCA 60.092 45.455 6.18 0.00 0.00 3.49
502 503 2.590821 AGGGCCACATTGATTCATAGC 58.409 47.619 6.18 0.00 0.00 2.97
503 504 5.593909 TGTTTAGGGCCACATTGATTCATAG 59.406 40.000 6.18 0.00 0.00 2.23
504 505 5.514169 TGTTTAGGGCCACATTGATTCATA 58.486 37.500 6.18 0.00 0.00 2.15
505 506 4.352009 TGTTTAGGGCCACATTGATTCAT 58.648 39.130 6.18 0.00 0.00 2.57
506 507 3.772387 TGTTTAGGGCCACATTGATTCA 58.228 40.909 6.18 0.00 0.00 2.57
507 508 5.343307 AATGTTTAGGGCCACATTGATTC 57.657 39.130 17.19 0.00 41.18 2.52
508 509 7.436320 AATAATGTTTAGGGCCACATTGATT 57.564 32.000 23.68 17.09 42.38 2.57
509 510 7.255451 CGTAATAATGTTTAGGGCCACATTGAT 60.255 37.037 23.68 16.52 42.38 2.57
510 511 6.038825 CGTAATAATGTTTAGGGCCACATTGA 59.961 38.462 23.68 12.44 42.38 2.57
511 512 6.038825 TCGTAATAATGTTTAGGGCCACATTG 59.961 38.462 23.68 11.50 42.38 2.82
512 513 6.038936 GTCGTAATAATGTTTAGGGCCACATT 59.961 38.462 20.45 20.45 44.18 2.71
513 514 5.529800 GTCGTAATAATGTTTAGGGCCACAT 59.470 40.000 6.18 3.88 35.00 3.21
514 515 4.877251 GTCGTAATAATGTTTAGGGCCACA 59.123 41.667 6.18 0.93 0.00 4.17
515 516 5.121105 AGTCGTAATAATGTTTAGGGCCAC 58.879 41.667 6.18 0.00 0.00 5.01
516 517 5.362105 AGTCGTAATAATGTTTAGGGCCA 57.638 39.130 6.18 0.00 0.00 5.36
517 518 6.932960 ACATAGTCGTAATAATGTTTAGGGCC 59.067 38.462 0.00 0.00 0.00 5.80
518 519 7.958053 ACATAGTCGTAATAATGTTTAGGGC 57.042 36.000 0.00 0.00 0.00 5.19
551 552 9.299963 CACACACATTTTTGAGTTTTCAATAGA 57.700 29.630 0.00 0.00 42.60 1.98
552 553 8.542132 CCACACACATTTTTGAGTTTTCAATAG 58.458 33.333 0.00 0.00 42.60 1.73
554 555 6.183360 GCCACACACATTTTTGAGTTTTCAAT 60.183 34.615 0.00 0.00 42.60 2.57
562 563 7.814107 ACATAATTAGCCACACACATTTTTGAG 59.186 33.333 0.00 0.00 0.00 3.02
574 575 2.757868 GCCACCAACATAATTAGCCACA 59.242 45.455 0.00 0.00 0.00 4.17
575 576 2.757868 TGCCACCAACATAATTAGCCAC 59.242 45.455 0.00 0.00 0.00 5.01
579 580 7.490840 TCATTCATTGCCACCAACATAATTAG 58.509 34.615 0.00 0.00 32.95 1.73
587 589 5.045215 CACATATCATTCATTGCCACCAAC 58.955 41.667 0.00 0.00 32.95 3.77
590 592 3.638160 ACCACATATCATTCATTGCCACC 59.362 43.478 0.00 0.00 0.00 4.61
606 608 9.784531 CAGTTATCTTCCAATTCTATACCACAT 57.215 33.333 0.00 0.00 0.00 3.21
609 611 7.224297 GGCAGTTATCTTCCAATTCTATACCA 58.776 38.462 0.00 0.00 0.00 3.25
610 612 6.655425 GGGCAGTTATCTTCCAATTCTATACC 59.345 42.308 0.00 0.00 0.00 2.73
611 613 7.224297 TGGGCAGTTATCTTCCAATTCTATAC 58.776 38.462 0.00 0.00 0.00 1.47
612 614 7.387265 TGGGCAGTTATCTTCCAATTCTATA 57.613 36.000 0.00 0.00 0.00 1.31
614 616 5.708736 TGGGCAGTTATCTTCCAATTCTA 57.291 39.130 0.00 0.00 0.00 2.10
616 618 4.438744 CGTTGGGCAGTTATCTTCCAATTC 60.439 45.833 8.02 0.00 37.04 2.17
617 619 3.443681 CGTTGGGCAGTTATCTTCCAATT 59.556 43.478 8.02 0.00 37.04 2.32
618 620 3.016736 CGTTGGGCAGTTATCTTCCAAT 58.983 45.455 8.02 0.00 37.04 3.16
619 621 2.039216 TCGTTGGGCAGTTATCTTCCAA 59.961 45.455 0.00 0.00 34.39 3.53
620 622 1.626321 TCGTTGGGCAGTTATCTTCCA 59.374 47.619 0.00 0.00 0.00 3.53
621 623 2.007608 GTCGTTGGGCAGTTATCTTCC 58.992 52.381 0.00 0.00 0.00 3.46
622 624 2.007608 GGTCGTTGGGCAGTTATCTTC 58.992 52.381 0.00 0.00 0.00 2.87
623 625 1.628846 AGGTCGTTGGGCAGTTATCTT 59.371 47.619 0.00 0.00 0.00 2.40
624 626 1.207329 GAGGTCGTTGGGCAGTTATCT 59.793 52.381 0.00 0.00 0.00 1.98
625 627 1.653151 GAGGTCGTTGGGCAGTTATC 58.347 55.000 0.00 0.00 0.00 1.75
626 628 0.108329 CGAGGTCGTTGGGCAGTTAT 60.108 55.000 0.00 0.00 34.11 1.89
627 629 1.290955 CGAGGTCGTTGGGCAGTTA 59.709 57.895 0.00 0.00 34.11 2.24
628 630 2.030562 CGAGGTCGTTGGGCAGTT 59.969 61.111 0.00 0.00 34.11 3.16
629 631 4.681978 GCGAGGTCGTTGGGCAGT 62.682 66.667 0.69 0.00 42.22 4.40
630 632 4.680237 TGCGAGGTCGTTGGGCAG 62.680 66.667 0.69 0.00 42.22 4.85
631 633 4.980805 GTGCGAGGTCGTTGGGCA 62.981 66.667 0.69 0.00 42.22 5.36
633 635 3.530910 AAGGTGCGAGGTCGTTGGG 62.531 63.158 0.69 0.00 42.22 4.12
666 668 0.953960 GTGGAACGCGAGGTGGATTT 60.954 55.000 15.93 0.00 0.00 2.17
736 738 4.811557 CAGGTTAGCTTCTATACTGTTGGC 59.188 45.833 0.00 0.00 0.00 4.52
737 739 5.812642 CACAGGTTAGCTTCTATACTGTTGG 59.187 44.000 0.00 0.00 35.72 3.77
752 779 1.741770 GCCAGTCGCCACAGGTTAG 60.742 63.158 0.00 0.00 31.60 2.34
756 783 3.052082 CTTGCCAGTCGCCACAGG 61.052 66.667 0.00 0.00 36.24 4.00
772 799 2.345244 CAAGCGACCTGACTGCCT 59.655 61.111 0.00 0.00 0.00 4.75
774 801 0.737715 CTACCAAGCGACCTGACTGC 60.738 60.000 0.00 0.00 0.00 4.40
786 824 1.134848 GGTCTCTGCTCAGCTACCAAG 60.135 57.143 0.00 0.00 34.83 3.61
787 825 0.898320 GGTCTCTGCTCAGCTACCAA 59.102 55.000 0.00 0.00 34.83 3.67
789 827 0.972983 TGGGTCTCTGCTCAGCTACC 60.973 60.000 0.00 0.08 34.31 3.18
816 855 2.260434 GTGGAGCGCGAGGTTGTA 59.740 61.111 12.10 0.00 45.11 2.41
838 877 7.690952 TTATTTTACTTAATTGGCGTCACCT 57.309 32.000 0.00 0.00 40.22 4.00
864 904 7.121168 TGCCATGGCTTAAATTGATATAGTAGC 59.879 37.037 35.53 3.91 42.51 3.58
866 906 7.119116 CGTGCCATGGCTTAAATTGATATAGTA 59.881 37.037 35.53 7.83 42.51 1.82
867 907 6.072508 CGTGCCATGGCTTAAATTGATATAGT 60.073 38.462 35.53 0.00 42.51 2.12
877 922 0.037590 AGACCGTGCCATGGCTTAAA 59.962 50.000 35.53 14.65 42.51 1.52
880 925 0.255890 AATAGACCGTGCCATGGCTT 59.744 50.000 35.53 17.30 42.51 4.35
904 949 0.100682 TGATACGAACGAGAGCAGGC 59.899 55.000 0.14 0.00 0.00 4.85
907 952 2.609916 CTCTCTGATACGAACGAGAGCA 59.390 50.000 0.14 0.00 41.88 4.26
915 960 3.865446 TGTCCGTACTCTCTGATACGAA 58.135 45.455 10.06 0.00 45.51 3.85
918 963 5.057819 TCTGATGTCCGTACTCTCTGATAC 58.942 45.833 0.00 0.00 0.00 2.24
919 964 5.291905 TCTGATGTCCGTACTCTCTGATA 57.708 43.478 0.00 0.00 0.00 2.15
926 971 4.034858 TGACGTAATCTGATGTCCGTACTC 59.965 45.833 8.76 0.81 34.92 2.59
945 990 1.788258 TTTCTCTGCTCAGCTTGACG 58.212 50.000 0.00 0.00 0.00 4.35
976 1021 0.249073 CTTCGTGCCTCGGATCGATT 60.249 55.000 0.00 0.00 40.32 3.34
1548 1605 1.300697 GTTGTCGTGGGCTTCGAGT 60.301 57.895 5.04 0.00 37.99 4.18
1626 1683 2.256591 GCCACCACAGCAGTCAGTG 61.257 63.158 2.79 2.79 35.56 3.66
1702 1759 1.846439 GATCACCTTGGGGAGATCCAA 59.154 52.381 10.06 0.00 46.77 3.53
1885 1942 3.594232 AGATGGAGGGATCCGAGTAGTAT 59.406 47.826 5.45 0.00 0.00 2.12
1886 1943 2.987437 AGATGGAGGGATCCGAGTAGTA 59.013 50.000 5.45 0.00 0.00 1.82
1894 1951 4.537688 TGGATTATCAAGATGGAGGGATCC 59.462 45.833 1.92 1.92 0.00 3.36
1904 1961 6.914665 TGTTGGAGGAATGGATTATCAAGAT 58.085 36.000 0.00 0.00 0.00 2.40
1908 1965 6.078456 ACTTGTTGGAGGAATGGATTATCA 57.922 37.500 0.00 0.00 0.00 2.15
1920 1977 5.484715 TCGTCCTAAAATACTTGTTGGAGG 58.515 41.667 0.00 0.00 0.00 4.30
1936 1993 5.916661 AAATTAGCACTCTCTTCGTCCTA 57.083 39.130 0.00 0.00 0.00 2.94
1939 1996 8.859517 AAGTATAAATTAGCACTCTCTTCGTC 57.140 34.615 0.00 0.00 0.00 4.20
1946 2003 9.686683 AAATGGTGAAGTATAAATTAGCACTCT 57.313 29.630 0.00 0.00 0.00 3.24
1951 2008 9.937175 GTCTGAAATGGTGAAGTATAAATTAGC 57.063 33.333 0.00 0.00 0.00 3.09
2006 2069 5.309543 TGACAATTAATATGGATCCGAGGGT 59.690 40.000 7.39 0.00 0.00 4.34
2012 2075 7.516198 AAGCTGTGACAATTAATATGGATCC 57.484 36.000 4.20 4.20 0.00 3.36
2016 2079 6.866480 ACCAAAGCTGTGACAATTAATATGG 58.134 36.000 5.12 0.00 0.00 2.74
2092 2155 1.071605 CCTGTTAGCGTCAGTTCAGC 58.928 55.000 5.45 0.00 0.00 4.26
2544 2621 9.017509 CATGATAATATCCCTGCAAACATAAGT 57.982 33.333 0.00 0.00 0.00 2.24
2557 2637 9.726438 ACTTAAGCTGTTACATGATAATATCCC 57.274 33.333 0.00 0.00 0.00 3.85
2631 2717 9.313323 CAAACGCACATATTATTTAATACTCCG 57.687 33.333 0.00 0.00 31.57 4.63
2693 2779 1.673665 CAGGGTCACTGGCAGAAGC 60.674 63.158 23.66 17.17 43.70 3.86
3035 3121 4.517285 GGAATGACAGAAATGTAGGCTGA 58.483 43.478 0.00 0.00 33.94 4.26
3107 3195 5.658190 AGGGAATGAAGGGTTTTCACATATG 59.342 40.000 0.00 0.00 0.00 1.78
3237 3325 9.628500 GGTAATTATTTGGATAGGAAAGAGTGT 57.372 33.333 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.