Multiple sequence alignment - TraesCS7B01G456200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G456200 chr7B 100.000 3434 0 0 1 3434 716565844 716569277 0.000000e+00 6342.0
1 TraesCS7B01G456200 chr7B 92.578 2304 121 31 508 2793 716650067 716652338 0.000000e+00 3262.0
2 TraesCS7B01G456200 chr7B 99.840 1250 2 0 1641 2890 716581133 716582382 0.000000e+00 2298.0
3 TraesCS7B01G456200 chr7B 97.196 642 18 0 2793 3434 716652373 716653014 0.000000e+00 1086.0
4 TraesCS7B01G456200 chr7B 87.523 545 49 9 2122 2666 716661980 716662505 2.270000e-171 612.0
5 TraesCS7B01G456200 chr7B 88.235 51 4 2 287 335 67836621 67836571 3.700000e-05 60.2
6 TraesCS7B01G456200 chrUn 99.554 1794 8 0 1641 3434 224999414 224997621 0.000000e+00 3269.0
7 TraesCS7B01G456200 chrUn 99.840 1250 2 0 1641 2890 370758091 370759340 0.000000e+00 2298.0
8 TraesCS7B01G456200 chrUn 100.000 383 0 0 2508 2890 231064775 231065157 0.000000e+00 708.0
9 TraesCS7B01G456200 chrUn 83.673 196 22 6 1 194 124576622 124576809 3.520000e-40 176.0
10 TraesCS7B01G456200 chrUn 81.553 206 26 7 8 212 108344041 108343847 3.550000e-35 159.0
11 TraesCS7B01G456200 chrUn 87.324 142 12 3 54 195 28373740 28373875 1.280000e-34 158.0
12 TraesCS7B01G456200 chrUn 81.283 187 28 4 5 191 231696341 231696162 9.930000e-31 145.0
13 TraesCS7B01G456200 chrUn 78.605 215 34 8 1 212 216636399 216636194 7.730000e-27 132.0
14 TraesCS7B01G456200 chrUn 84.058 138 20 1 54 191 464390453 464390588 7.730000e-27 132.0
15 TraesCS7B01G456200 chrUn 90.110 91 8 1 102 192 468125918 468125829 2.170000e-22 117.0
16 TraesCS7B01G456200 chrUn 90.000 90 9 0 102 191 474645882 474645793 2.170000e-22 117.0
17 TraesCS7B01G456200 chrUn 88.889 90 10 0 102 191 469520051 469520140 1.010000e-20 111.0
18 TraesCS7B01G456200 chrUn 86.420 81 8 3 54 134 95795462 95795385 6.110000e-13 86.1
19 TraesCS7B01G456200 chrUn 85.714 77 9 1 54 130 1893475 1893549 2.840000e-11 80.5
20 TraesCS7B01G456200 chrUn 85.714 77 7 3 54 130 306553268 306553196 1.020000e-10 78.7
21 TraesCS7B01G456200 chrUn 84.337 83 7 5 54 134 203362973 203363051 3.670000e-10 76.8
22 TraesCS7B01G456200 chrUn 85.714 70 9 1 54 123 283143282 283143214 4.750000e-09 73.1
23 TraesCS7B01G456200 chrUn 80.460 87 15 2 54 140 311444574 311444490 7.950000e-07 65.8
24 TraesCS7B01G456200 chrUn 80.460 87 15 2 54 140 473070898 473070982 7.950000e-07 65.8
25 TraesCS7B01G456200 chrUn 97.297 37 1 0 53 89 94752063 94752027 2.860000e-06 63.9
26 TraesCS7B01G456200 chrUn 81.818 77 11 3 54 130 28810140 28810213 1.030000e-05 62.1
27 TraesCS7B01G456200 chr7D 92.007 1664 88 25 244 1883 619895952 619894310 0.000000e+00 2294.0
28 TraesCS7B01G456200 chr7D 88.303 607 47 12 2074 2666 619894249 619893653 0.000000e+00 706.0
29 TraesCS7B01G456200 chr7D 86.667 585 68 6 2082 2666 619999375 619998801 1.040000e-179 640.0
30 TraesCS7B01G456200 chr7D 91.639 299 25 0 1526 1824 619999736 619999438 6.860000e-112 414.0
31 TraesCS7B01G456200 chr7D 90.763 249 23 0 2793 3041 85356814 85357062 1.980000e-87 333.0
32 TraesCS7B01G456200 chr7D 84.906 212 26 2 1 212 32768928 32769133 3.470000e-50 209.0
33 TraesCS7B01G456200 chr7A 92.563 1358 86 13 530 1883 715224075 715225421 0.000000e+00 1934.0
34 TraesCS7B01G456200 chr7A 92.171 562 28 9 2115 2666 715225550 715226105 0.000000e+00 780.0
35 TraesCS7B01G456200 chr7A 87.541 305 18 9 249 536 715222598 715222899 5.490000e-88 335.0
36 TraesCS7B01G456200 chr4B 85.990 828 106 3 995 1813 70999392 70998566 0.000000e+00 878.0
37 TraesCS7B01G456200 chr4D 85.749 828 109 4 995 1813 48121587 48120760 0.000000e+00 867.0
38 TraesCS7B01G456200 chr4D 84.293 191 24 3 1 191 342906645 342906461 7.570000e-42 182.0
39 TraesCS7B01G456200 chr4D 80.000 195 28 6 1 195 31026136 31026319 2.150000e-27 134.0
40 TraesCS7B01G456200 chr4D 87.069 116 14 1 97 212 479507566 479507452 2.780000e-26 130.0
41 TraesCS7B01G456200 chr4D 92.222 90 7 0 102 191 488558481 488558392 1.000000e-25 128.0
42 TraesCS7B01G456200 chr4D 77.889 199 29 9 1 199 4993202 4993019 3.620000e-20 110.0
43 TraesCS7B01G456200 chr4D 88.235 85 6 1 5 89 503212893 503212813 7.840000e-17 99.0
44 TraesCS7B01G456200 chr4D 86.420 81 8 3 54 134 503766881 503766804 6.110000e-13 86.1
45 TraesCS7B01G456200 chr4D 84.706 85 9 1 5 89 505221413 505221493 7.900000e-12 82.4
46 TraesCS7B01G456200 chr3B 87.383 642 79 2 2793 3434 216080987 216080348 0.000000e+00 736.0
47 TraesCS7B01G456200 chr3A 86.385 639 83 3 2797 3434 674081104 674081739 0.000000e+00 695.0
48 TraesCS7B01G456200 chr3A 90.726 248 23 0 2793 3040 423236847 423236600 7.100000e-87 331.0
49 TraesCS7B01G456200 chr3D 90.890 483 42 2 2951 3432 8916740 8917221 0.000000e+00 647.0
50 TraesCS7B01G456200 chr3D 89.876 484 49 0 2951 3434 576265958 576266441 1.050000e-174 623.0
51 TraesCS7B01G456200 chr5A 89.938 487 47 2 2946 3432 83064225 83063741 8.090000e-176 627.0
52 TraesCS7B01G456200 chr5D 89.918 486 46 3 2951 3434 483237048 483237532 1.050000e-174 623.0
53 TraesCS7B01G456200 chr5D 85.417 192 21 3 3 193 558838113 558838298 3.500000e-45 193.0
54 TraesCS7B01G456200 chr5D 82.723 191 26 4 1 191 2100398 2100581 2.740000e-36 163.0
55 TraesCS7B01G456200 chr5D 80.808 198 30 4 2 198 440332171 440331981 7.680000e-32 148.0
56 TraesCS7B01G456200 chr5D 89.474 57 4 2 287 341 485938210 485938154 1.710000e-08 71.3
57 TraesCS7B01G456200 chr2B 89.409 491 43 6 2946 3434 324628921 324628438 8.150000e-171 610.0
58 TraesCS7B01G456200 chr2B 83.019 212 28 4 2 212 191894855 191895059 5.850000e-43 185.0
59 TraesCS7B01G456200 chr6B 91.275 298 26 0 2793 3090 142069331 142069034 1.150000e-109 407.0
60 TraesCS7B01G456200 chr6B 82.160 213 28 7 1 212 659339900 659339697 1.270000e-39 174.0
61 TraesCS7B01G456200 chr2A 87.683 341 31 3 2793 3133 753264280 753263951 1.490000e-103 387.0
62 TraesCS7B01G456200 chr2A 87.973 291 28 4 2667 2957 725064918 725064635 1.530000e-88 337.0
63 TraesCS7B01G456200 chr2A 94.872 39 1 1 287 324 694150370 694150408 3.700000e-05 60.2
64 TraesCS7B01G456200 chr2D 85.859 198 22 4 1 198 456686118 456685927 4.490000e-49 206.0
65 TraesCS7B01G456200 chr2D 83.886 211 26 5 2 212 382046093 382046295 9.720000e-46 195.0
66 TraesCS7B01G456200 chr2D 81.776 214 29 6 1 212 605489286 605489081 1.640000e-38 171.0
67 TraesCS7B01G456200 chr2D 92.000 50 3 1 287 335 624184929 624184978 6.150000e-08 69.4
68 TraesCS7B01G456200 chr1B 95.312 128 6 0 2667 2794 190279940 190280067 1.620000e-48 204.0
69 TraesCS7B01G456200 chr1B 80.189 212 32 8 2 212 569223409 569223611 2.130000e-32 150.0
70 TraesCS7B01G456200 chr1B 91.111 45 2 1 287 329 332089172 332089216 3.700000e-05 60.2
71 TraesCS7B01G456200 chr1B 100.000 28 0 0 2003 2030 95662174 95662201 6.000000e-03 52.8
72 TraesCS7B01G456200 chr5B 83.491 212 29 3 1 212 528841513 528841308 3.500000e-45 193.0
73 TraesCS7B01G456200 chr5B 83.684 190 25 3 2 191 19164662 19164845 1.270000e-39 174.0
74 TraesCS7B01G456200 chr6D 85.027 187 23 2 5 191 11958712 11958531 5.850000e-43 185.0
75 TraesCS7B01G456200 chr6D 77.934 213 30 11 1 212 441408255 441408451 2.170000e-22 117.0
76 TraesCS7B01G456200 chr6D 86.420 81 8 3 54 134 443232761 443232684 6.110000e-13 86.1
77 TraesCS7B01G456200 chr6D 86.250 80 8 3 55 134 465262341 465262265 2.200000e-12 84.2
78 TraesCS7B01G456200 chr6D 84.337 83 11 2 54 136 870613 870533 2.840000e-11 80.5
79 TraesCS7B01G456200 chr6D 85.185 81 8 1 1 81 359725221 359725145 2.840000e-11 80.5
80 TraesCS7B01G456200 chr6D 85.714 77 9 1 54 130 426754345 426754271 2.840000e-11 80.5
81 TraesCS7B01G456200 chr1D 83.838 198 26 3 1 198 173001703 173001512 2.100000e-42 183.0
82 TraesCS7B01G456200 chr1D 82.723 191 27 3 1 191 306361125 306361309 7.620000e-37 165.0
83 TraesCS7B01G456200 chr1D 85.000 160 19 5 54 212 416709073 416708918 1.280000e-34 158.0
84 TraesCS7B01G456200 chr1D 86.667 135 16 1 57 191 2058249 2058117 7.680000e-32 148.0
85 TraesCS7B01G456200 chr1D 89.565 115 12 0 98 212 31928471 31928357 2.760000e-31 147.0
86 TraesCS7B01G456200 chr1D 78.974 195 29 5 1 195 440995777 440995959 4.650000e-24 122.0
87 TraesCS7B01G456200 chr6A 80.976 205 32 3 8 212 499568920 499568723 4.590000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G456200 chr7B 716565844 716569277 3433 False 6342.000000 6342 100.000000 1 3434 1 chr7B.!!$F1 3433
1 TraesCS7B01G456200 chr7B 716581133 716582382 1249 False 2298.000000 2298 99.840000 1641 2890 1 chr7B.!!$F2 1249
2 TraesCS7B01G456200 chr7B 716650067 716653014 2947 False 2174.000000 3262 94.887000 508 3434 2 chr7B.!!$F4 2926
3 TraesCS7B01G456200 chr7B 716661980 716662505 525 False 612.000000 612 87.523000 2122 2666 1 chr7B.!!$F3 544
4 TraesCS7B01G456200 chrUn 224997621 224999414 1793 True 3269.000000 3269 99.554000 1641 3434 1 chrUn.!!$R5 1793
5 TraesCS7B01G456200 chrUn 370758091 370759340 1249 False 2298.000000 2298 99.840000 1641 2890 1 chrUn.!!$F7 1249
6 TraesCS7B01G456200 chr7D 619893653 619895952 2299 True 1500.000000 2294 90.155000 244 2666 2 chr7D.!!$R1 2422
7 TraesCS7B01G456200 chr7D 619998801 619999736 935 True 527.000000 640 89.153000 1526 2666 2 chr7D.!!$R2 1140
8 TraesCS7B01G456200 chr7A 715222598 715226105 3507 False 1016.333333 1934 90.758333 249 2666 3 chr7A.!!$F1 2417
9 TraesCS7B01G456200 chr4B 70998566 70999392 826 True 878.000000 878 85.990000 995 1813 1 chr4B.!!$R1 818
10 TraesCS7B01G456200 chr4D 48120760 48121587 827 True 867.000000 867 85.749000 995 1813 1 chr4D.!!$R2 818
11 TraesCS7B01G456200 chr3B 216080348 216080987 639 True 736.000000 736 87.383000 2793 3434 1 chr3B.!!$R1 641
12 TraesCS7B01G456200 chr3A 674081104 674081739 635 False 695.000000 695 86.385000 2797 3434 1 chr3A.!!$F1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 1851 0.032267 CGACCTCGGGCCTTTATCTC 59.968 60.0 0.84 0.0 35.37 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2890 4207 0.179084 TGGCGCCTAGTCATAGCAAC 60.179 55.0 29.7 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.074647 GACCTTTGGTCCCGGTTG 57.925 61.111 0.00 0.00 46.19 3.77
20 21 1.602605 GACCTTTGGTCCCGGTTGG 60.603 63.158 0.00 0.00 46.19 3.77
21 22 2.347691 GACCTTTGGTCCCGGTTGGT 62.348 60.000 0.00 0.00 46.19 3.67
22 23 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
23 24 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
24 25 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
26 27 4.360405 GGTCCCGGTTGGTGGCAT 62.360 66.667 0.00 0.00 34.77 4.40
27 28 3.061848 GTCCCGGTTGGTGGCATG 61.062 66.667 0.00 0.00 34.77 4.06
28 29 4.358841 TCCCGGTTGGTGGCATGG 62.359 66.667 0.00 0.00 34.77 3.66
29 30 4.358841 CCCGGTTGGTGGCATGGA 62.359 66.667 0.00 0.00 0.00 3.41
30 31 3.061848 CCGGTTGGTGGCATGGAC 61.062 66.667 0.00 0.00 0.00 4.02
31 32 2.034066 CGGTTGGTGGCATGGACT 59.966 61.111 0.00 0.00 0.00 3.85
32 33 2.334946 CGGTTGGTGGCATGGACTG 61.335 63.158 0.00 0.00 0.00 3.51
33 34 1.978617 GGTTGGTGGCATGGACTGG 60.979 63.158 0.00 0.00 0.00 4.00
34 35 1.978617 GTTGGTGGCATGGACTGGG 60.979 63.158 0.00 0.00 0.00 4.45
35 36 2.159490 TTGGTGGCATGGACTGGGA 61.159 57.895 0.00 0.00 0.00 4.37
36 37 2.044946 GGTGGCATGGACTGGGAC 60.045 66.667 0.00 0.00 0.00 4.46
37 38 2.606587 GGTGGCATGGACTGGGACT 61.607 63.158 0.00 0.00 0.00 3.85
38 39 1.271840 GGTGGCATGGACTGGGACTA 61.272 60.000 0.00 0.00 0.00 2.59
39 40 0.618458 GTGGCATGGACTGGGACTAA 59.382 55.000 0.00 0.00 0.00 2.24
40 41 1.004277 GTGGCATGGACTGGGACTAAA 59.996 52.381 0.00 0.00 0.00 1.85
41 42 1.281867 TGGCATGGACTGGGACTAAAG 59.718 52.381 0.00 0.00 0.00 1.85
42 43 1.408822 GGCATGGACTGGGACTAAAGG 60.409 57.143 0.00 0.00 0.00 3.11
43 44 1.408822 GCATGGACTGGGACTAAAGGG 60.409 57.143 0.00 0.00 0.00 3.95
44 45 1.212935 CATGGACTGGGACTAAAGGGG 59.787 57.143 0.00 0.00 0.00 4.79
45 46 0.549169 TGGACTGGGACTAAAGGGGG 60.549 60.000 0.00 0.00 0.00 5.40
63 64 2.447408 GGGAATTAATTGGTCCCGGT 57.553 50.000 5.17 0.00 41.70 5.28
64 65 2.742348 GGGAATTAATTGGTCCCGGTT 58.258 47.619 5.17 0.00 41.70 4.44
65 66 2.429250 GGGAATTAATTGGTCCCGGTTG 59.571 50.000 5.17 0.00 41.70 3.77
66 67 2.429250 GGAATTAATTGGTCCCGGTTGG 59.571 50.000 5.17 0.00 0.00 3.77
67 68 2.911552 ATTAATTGGTCCCGGTTGGT 57.088 45.000 0.00 0.00 34.77 3.67
68 69 1.912417 TTAATTGGTCCCGGTTGGTG 58.088 50.000 0.00 0.00 34.77 4.17
69 70 0.609681 TAATTGGTCCCGGTTGGTGC 60.610 55.000 0.00 0.00 34.77 5.01
70 71 3.879180 ATTGGTCCCGGTTGGTGCC 62.879 63.158 0.00 0.00 34.77 5.01
82 83 2.597510 GGTGCCACCAACCAGGAC 60.598 66.667 9.55 0.00 41.22 3.85
83 84 2.978010 GTGCCACCAACCAGGACG 60.978 66.667 0.00 0.00 41.22 4.79
84 85 3.164977 TGCCACCAACCAGGACGA 61.165 61.111 0.00 0.00 41.22 4.20
85 86 2.112297 GCCACCAACCAGGACGAA 59.888 61.111 0.00 0.00 41.22 3.85
86 87 1.527380 GCCACCAACCAGGACGAAA 60.527 57.895 0.00 0.00 41.22 3.46
87 88 1.515521 GCCACCAACCAGGACGAAAG 61.516 60.000 0.00 0.00 41.22 2.62
88 89 0.889186 CCACCAACCAGGACGAAAGG 60.889 60.000 0.00 0.00 41.22 3.11
89 90 0.179029 CACCAACCAGGACGAAAGGT 60.179 55.000 0.00 0.00 41.22 3.50
90 91 0.549469 ACCAACCAGGACGAAAGGTT 59.451 50.000 0.00 0.00 46.03 3.50
91 92 1.770061 ACCAACCAGGACGAAAGGTTA 59.230 47.619 0.00 0.00 43.43 2.85
92 93 2.173143 ACCAACCAGGACGAAAGGTTAA 59.827 45.455 0.00 0.00 43.43 2.01
93 94 3.181437 ACCAACCAGGACGAAAGGTTAAT 60.181 43.478 0.00 0.00 43.43 1.40
94 95 4.041938 ACCAACCAGGACGAAAGGTTAATA 59.958 41.667 0.00 0.00 43.43 0.98
95 96 5.190677 CCAACCAGGACGAAAGGTTAATAT 58.809 41.667 0.00 0.00 43.43 1.28
96 97 6.070078 ACCAACCAGGACGAAAGGTTAATATA 60.070 38.462 0.00 0.00 43.43 0.86
97 98 6.996282 CCAACCAGGACGAAAGGTTAATATAT 59.004 38.462 0.00 0.00 43.43 0.86
98 99 7.501225 CCAACCAGGACGAAAGGTTAATATATT 59.499 37.037 2.97 2.97 43.43 1.28
99 100 8.342634 CAACCAGGACGAAAGGTTAATATATTG 58.657 37.037 8.28 0.00 43.43 1.90
100 101 7.571025 ACCAGGACGAAAGGTTAATATATTGT 58.429 34.615 8.28 0.00 29.58 2.71
101 102 8.050930 ACCAGGACGAAAGGTTAATATATTGTT 58.949 33.333 8.28 0.00 29.58 2.83
102 103 8.557029 CCAGGACGAAAGGTTAATATATTGTTC 58.443 37.037 8.28 3.72 0.00 3.18
103 104 8.557029 CAGGACGAAAGGTTAATATATTGTTCC 58.443 37.037 8.28 7.55 0.00 3.62
104 105 7.718314 AGGACGAAAGGTTAATATATTGTTCCC 59.282 37.037 8.28 2.96 0.00 3.97
105 106 7.307573 GGACGAAAGGTTAATATATTGTTCCCG 60.308 40.741 8.28 8.73 0.00 5.14
106 107 6.484308 ACGAAAGGTTAATATATTGTTCCCGG 59.516 38.462 8.28 0.00 0.00 5.73
107 108 6.484308 CGAAAGGTTAATATATTGTTCCCGGT 59.516 38.462 8.28 0.00 0.00 5.28
108 109 7.012610 CGAAAGGTTAATATATTGTTCCCGGTT 59.987 37.037 8.28 3.33 0.00 4.44
109 110 7.576861 AAGGTTAATATATTGTTCCCGGTTG 57.423 36.000 8.28 0.00 0.00 3.77
110 111 6.066032 AGGTTAATATATTGTTCCCGGTTGG 58.934 40.000 8.28 0.00 0.00 3.77
111 112 5.829391 GGTTAATATATTGTTCCCGGTTGGT 59.171 40.000 8.28 0.00 34.77 3.67
112 113 6.238814 GGTTAATATATTGTTCCCGGTTGGTG 60.239 42.308 8.28 0.00 34.77 4.17
113 114 2.137810 ATATTGTTCCCGGTTGGTGG 57.862 50.000 0.00 0.00 34.77 4.61
114 115 0.609681 TATTGTTCCCGGTTGGTGGC 60.610 55.000 0.00 0.00 34.77 5.01
115 116 2.648613 ATTGTTCCCGGTTGGTGGCA 62.649 55.000 0.00 0.00 34.77 4.92
116 117 3.292159 GTTCCCGGTTGGTGGCAC 61.292 66.667 9.70 9.70 34.77 5.01
117 118 4.589675 TTCCCGGTTGGTGGCACC 62.590 66.667 29.75 29.75 39.22 5.01
130 131 3.587933 GCACCAACCGCGACCAAA 61.588 61.111 8.23 0.00 0.00 3.28
131 132 2.637025 CACCAACCGCGACCAAAG 59.363 61.111 8.23 0.00 0.00 2.77
132 133 2.593436 ACCAACCGCGACCAAAGG 60.593 61.111 8.23 2.81 0.00 3.11
133 134 4.038080 CCAACCGCGACCAAAGGC 62.038 66.667 8.23 0.00 0.00 4.35
134 135 2.978010 CAACCGCGACCAAAGGCT 60.978 61.111 8.23 0.00 0.00 4.58
135 136 2.203294 AACCGCGACCAAAGGCTT 60.203 55.556 8.23 0.00 0.00 4.35
136 137 2.551912 AACCGCGACCAAAGGCTTG 61.552 57.895 8.23 0.00 0.00 4.01
137 138 2.978010 CCGCGACCAAAGGCTTGT 60.978 61.111 8.23 0.00 0.00 3.16
138 139 2.252260 CGCGACCAAAGGCTTGTG 59.748 61.111 0.00 1.43 0.00 3.33
139 140 2.050077 GCGACCAAAGGCTTGTGC 60.050 61.111 0.00 0.00 38.76 4.57
168 169 3.361977 GCGGTGCGGTTGGATGTT 61.362 61.111 0.00 0.00 0.00 2.71
169 170 2.914908 GCGGTGCGGTTGGATGTTT 61.915 57.895 0.00 0.00 0.00 2.83
170 171 1.579084 GCGGTGCGGTTGGATGTTTA 61.579 55.000 0.00 0.00 0.00 2.01
171 172 0.446222 CGGTGCGGTTGGATGTTTAG 59.554 55.000 0.00 0.00 0.00 1.85
172 173 1.530323 GGTGCGGTTGGATGTTTAGT 58.470 50.000 0.00 0.00 0.00 2.24
173 174 1.467342 GGTGCGGTTGGATGTTTAGTC 59.533 52.381 0.00 0.00 0.00 2.59
174 175 1.467342 GTGCGGTTGGATGTTTAGTCC 59.533 52.381 0.00 0.00 36.26 3.85
175 176 1.092348 GCGGTTGGATGTTTAGTCCC 58.908 55.000 0.00 0.00 34.76 4.46
176 177 1.612199 GCGGTTGGATGTTTAGTCCCA 60.612 52.381 0.00 0.00 34.76 4.37
177 178 2.081462 CGGTTGGATGTTTAGTCCCAC 58.919 52.381 0.00 0.00 34.76 4.61
178 179 2.443416 GGTTGGATGTTTAGTCCCACC 58.557 52.381 0.35 0.35 42.31 4.61
179 180 2.041216 GGTTGGATGTTTAGTCCCACCT 59.959 50.000 7.87 0.00 44.30 4.00
180 181 3.344515 GTTGGATGTTTAGTCCCACCTC 58.655 50.000 0.00 0.00 34.76 3.85
181 182 1.553248 TGGATGTTTAGTCCCACCTCG 59.447 52.381 0.00 0.00 34.76 4.63
182 183 1.653151 GATGTTTAGTCCCACCTCGC 58.347 55.000 0.00 0.00 0.00 5.03
183 184 1.207329 GATGTTTAGTCCCACCTCGCT 59.793 52.381 0.00 0.00 0.00 4.93
184 185 1.927487 TGTTTAGTCCCACCTCGCTA 58.073 50.000 0.00 0.00 0.00 4.26
185 186 1.822990 TGTTTAGTCCCACCTCGCTAG 59.177 52.381 0.00 0.00 0.00 3.42
186 187 0.822164 TTTAGTCCCACCTCGCTAGC 59.178 55.000 4.06 4.06 0.00 3.42
187 188 0.033405 TTAGTCCCACCTCGCTAGCT 60.033 55.000 13.93 0.00 0.00 3.32
188 189 0.752009 TAGTCCCACCTCGCTAGCTG 60.752 60.000 13.93 6.69 0.00 4.24
189 190 2.052690 GTCCCACCTCGCTAGCTGA 61.053 63.158 13.93 10.81 0.00 4.26
190 191 1.754621 TCCCACCTCGCTAGCTGAG 60.755 63.158 21.98 21.98 0.00 3.35
191 192 1.754621 CCCACCTCGCTAGCTGAGA 60.755 63.158 27.24 12.76 35.43 3.27
192 193 1.732917 CCACCTCGCTAGCTGAGAG 59.267 63.158 27.24 19.63 41.40 3.20
195 196 2.727544 CTCGCTAGCTGAGAGGCC 59.272 66.667 23.57 0.00 38.66 5.19
196 197 1.827789 CTCGCTAGCTGAGAGGCCT 60.828 63.158 23.57 3.86 38.66 5.19
197 198 1.795170 CTCGCTAGCTGAGAGGCCTC 61.795 65.000 26.22 26.22 38.66 4.70
198 199 2.124060 CGCTAGCTGAGAGGCCTCA 61.124 63.158 33.90 15.08 46.48 3.86
205 206 2.676232 TGAGAGGCCTCAAGAGTGG 58.324 57.895 33.90 0.00 45.74 4.00
206 207 0.178921 TGAGAGGCCTCAAGAGTGGT 60.179 55.000 33.90 11.28 45.74 4.16
207 208 0.980423 GAGAGGCCTCAAGAGTGGTT 59.020 55.000 33.90 10.48 39.24 3.67
208 209 1.349357 GAGAGGCCTCAAGAGTGGTTT 59.651 52.381 33.90 9.66 39.24 3.27
209 210 2.567615 GAGAGGCCTCAAGAGTGGTTTA 59.432 50.000 33.90 0.00 39.24 2.01
210 211 3.185455 AGAGGCCTCAAGAGTGGTTTAT 58.815 45.455 33.90 5.98 0.00 1.40
211 212 4.362677 AGAGGCCTCAAGAGTGGTTTATA 58.637 43.478 33.90 0.00 0.00 0.98
212 213 4.971924 AGAGGCCTCAAGAGTGGTTTATAT 59.028 41.667 33.90 4.78 0.00 0.86
213 214 6.143915 AGAGGCCTCAAGAGTGGTTTATATA 58.856 40.000 33.90 0.00 0.00 0.86
214 215 6.789959 AGAGGCCTCAAGAGTGGTTTATATAT 59.210 38.462 33.90 3.98 0.00 0.86
215 216 7.293535 AGAGGCCTCAAGAGTGGTTTATATATT 59.706 37.037 33.90 3.63 0.00 1.28
216 217 7.816411 AGGCCTCAAGAGTGGTTTATATATTT 58.184 34.615 0.00 0.00 0.00 1.40
217 218 7.939588 AGGCCTCAAGAGTGGTTTATATATTTC 59.060 37.037 0.00 0.00 0.00 2.17
218 219 7.175119 GGCCTCAAGAGTGGTTTATATATTTCC 59.825 40.741 0.00 0.00 0.00 3.13
219 220 7.939588 GCCTCAAGAGTGGTTTATATATTTCCT 59.060 37.037 0.00 0.00 0.00 3.36
220 221 9.495572 CCTCAAGAGTGGTTTATATATTTCCTC 57.504 37.037 0.00 0.00 0.00 3.71
243 244 8.863049 CCTCAACTTTTAACATATTTGTCATGC 58.137 33.333 0.00 0.00 34.06 4.06
244 245 8.755696 TCAACTTTTAACATATTTGTCATGCC 57.244 30.769 0.00 0.00 34.06 4.40
245 246 8.584157 TCAACTTTTAACATATTTGTCATGCCT 58.416 29.630 0.00 0.00 34.06 4.75
246 247 8.863049 CAACTTTTAACATATTTGTCATGCCTC 58.137 33.333 0.00 0.00 34.06 4.70
256 257 2.989909 TGTCATGCCTCGTCATCAAAT 58.010 42.857 0.00 0.00 0.00 2.32
285 286 6.656632 ATCAATCGAATAAGTGCCTCTCTA 57.343 37.500 0.00 0.00 0.00 2.43
294 295 6.934048 ATAAGTGCCTCTCTAATTCAAAGC 57.066 37.500 0.00 0.00 0.00 3.51
345 347 9.905713 AGAATTCTTAGGATTTGTGCTACATTA 57.094 29.630 0.88 0.00 0.00 1.90
349 351 9.905713 TTCTTAGGATTTGTGCTACATTAATCT 57.094 29.630 10.66 0.00 0.00 2.40
428 432 4.090729 CCGAATTGTCATGACATCAAACG 58.909 43.478 28.32 24.41 41.52 3.60
621 1837 1.666872 GGAACACCAACGACCTCGG 60.667 63.158 0.00 0.00 44.95 4.63
632 1851 0.032267 CGACCTCGGGCCTTTATCTC 59.968 60.000 0.84 0.00 35.37 2.75
639 1858 4.402474 CCTCGGGCCTTTATCTCAAAAATT 59.598 41.667 0.84 0.00 0.00 1.82
650 1869 8.801882 TTTATCTCAAAAATTATCCACCTCGT 57.198 30.769 0.00 0.00 0.00 4.18
654 1873 7.162761 TCTCAAAAATTATCCACCTCGTGTTA 58.837 34.615 0.00 0.00 0.00 2.41
784 2014 4.634443 CAGTCTATTTAAACCAAGGTCGGG 59.366 45.833 0.00 0.00 0.00 5.14
791 2021 1.565067 AACCAAGGTCGGGTAGTAGG 58.435 55.000 0.00 0.00 37.77 3.18
793 2023 1.109609 CCAAGGTCGGGTAGTAGGTC 58.890 60.000 0.00 0.00 0.00 3.85
803 2033 3.563223 GGGTAGTAGGTCAGCAGATACA 58.437 50.000 0.00 0.00 0.00 2.29
862 2095 8.784994 TGACGCCAAATTAAGTAAAGAAATACA 58.215 29.630 0.00 0.00 0.00 2.29
863 2096 9.274065 GACGCCAAATTAAGTAAAGAAATACAG 57.726 33.333 0.00 0.00 0.00 2.74
885 2119 4.036971 AGCTACTACTATCAACTTCAGCCG 59.963 45.833 0.00 0.00 0.00 5.52
889 2123 1.623811 ACTATCAACTTCAGCCGTGGT 59.376 47.619 0.00 0.00 0.00 4.16
891 2125 2.386661 ATCAACTTCAGCCGTGGTAG 57.613 50.000 0.00 0.00 0.00 3.18
963 2197 0.896923 AGGTCAAGCTGAGCAGAGAG 59.103 55.000 7.39 0.00 46.52 3.20
2890 4207 7.431084 GGTTATATTCTTGTAAATTGTGGTGCG 59.569 37.037 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.388610 ACCAACCGGGACCAAAGGT 61.389 57.895 6.32 0.00 41.15 3.50
4 5 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
5 6 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
6 7 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
7 8 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
9 10 4.360405 ATGCCACCAACCGGGACC 62.360 66.667 6.32 0.00 41.15 4.46
10 11 3.061848 CATGCCACCAACCGGGAC 61.062 66.667 6.32 0.00 41.15 4.46
11 12 4.358841 CCATGCCACCAACCGGGA 62.359 66.667 6.32 0.00 41.15 5.14
12 13 4.358841 TCCATGCCACCAACCGGG 62.359 66.667 6.32 0.00 44.81 5.73
13 14 3.061848 GTCCATGCCACCAACCGG 61.062 66.667 0.00 0.00 38.77 5.28
14 15 2.034066 AGTCCATGCCACCAACCG 59.966 61.111 0.00 0.00 0.00 4.44
15 16 1.978617 CCAGTCCATGCCACCAACC 60.979 63.158 0.00 0.00 0.00 3.77
16 17 1.978617 CCCAGTCCATGCCACCAAC 60.979 63.158 0.00 0.00 0.00 3.77
17 18 2.159490 TCCCAGTCCATGCCACCAA 61.159 57.895 0.00 0.00 0.00 3.67
18 19 2.531428 TCCCAGTCCATGCCACCA 60.531 61.111 0.00 0.00 0.00 4.17
19 20 1.271840 TAGTCCCAGTCCATGCCACC 61.272 60.000 0.00 0.00 0.00 4.61
20 21 0.618458 TTAGTCCCAGTCCATGCCAC 59.382 55.000 0.00 0.00 0.00 5.01
21 22 1.281867 CTTTAGTCCCAGTCCATGCCA 59.718 52.381 0.00 0.00 0.00 4.92
22 23 1.408822 CCTTTAGTCCCAGTCCATGCC 60.409 57.143 0.00 0.00 0.00 4.40
23 24 1.408822 CCCTTTAGTCCCAGTCCATGC 60.409 57.143 0.00 0.00 0.00 4.06
24 25 1.212935 CCCCTTTAGTCCCAGTCCATG 59.787 57.143 0.00 0.00 0.00 3.66
25 26 1.596496 CCCCTTTAGTCCCAGTCCAT 58.404 55.000 0.00 0.00 0.00 3.41
26 27 0.549169 CCCCCTTTAGTCCCAGTCCA 60.549 60.000 0.00 0.00 0.00 4.02
27 28 2.308185 CCCCCTTTAGTCCCAGTCC 58.692 63.158 0.00 0.00 0.00 3.85
42 43 1.699730 CGGGACCAATTAATTCCCCC 58.300 55.000 15.32 14.97 45.74 5.40
43 44 1.063492 ACCGGGACCAATTAATTCCCC 60.063 52.381 15.32 15.24 45.74 4.81
44 45 2.429250 CAACCGGGACCAATTAATTCCC 59.571 50.000 6.32 12.18 45.12 3.97
45 46 2.429250 CCAACCGGGACCAATTAATTCC 59.571 50.000 6.32 0.00 40.01 3.01
46 47 3.093814 ACCAACCGGGACCAATTAATTC 58.906 45.455 6.32 0.00 41.15 2.17
47 48 2.829120 CACCAACCGGGACCAATTAATT 59.171 45.455 6.32 0.00 41.15 1.40
48 49 2.452505 CACCAACCGGGACCAATTAAT 58.547 47.619 6.32 0.00 41.15 1.40
49 50 1.912417 CACCAACCGGGACCAATTAA 58.088 50.000 6.32 0.00 41.15 1.40
50 51 0.609681 GCACCAACCGGGACCAATTA 60.610 55.000 6.32 0.00 41.15 1.40
51 52 1.906333 GCACCAACCGGGACCAATT 60.906 57.895 6.32 0.00 41.15 2.32
52 53 2.282887 GCACCAACCGGGACCAAT 60.283 61.111 6.32 0.00 41.15 3.16
53 54 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
65 66 2.597510 GTCCTGGTTGGTGGCACC 60.598 66.667 29.75 29.75 39.22 5.01
66 67 2.951475 TTCGTCCTGGTTGGTGGCAC 62.951 60.000 9.70 9.70 37.07 5.01
67 68 2.272230 TTTCGTCCTGGTTGGTGGCA 62.272 55.000 0.00 0.00 37.07 4.92
68 69 1.515521 CTTTCGTCCTGGTTGGTGGC 61.516 60.000 0.00 0.00 37.07 5.01
69 70 0.889186 CCTTTCGTCCTGGTTGGTGG 60.889 60.000 0.00 0.00 37.07 4.61
70 71 0.179029 ACCTTTCGTCCTGGTTGGTG 60.179 55.000 0.00 0.00 37.07 4.17
71 72 0.549469 AACCTTTCGTCCTGGTTGGT 59.451 50.000 0.00 0.00 41.87 3.67
72 73 2.554370 TAACCTTTCGTCCTGGTTGG 57.446 50.000 6.86 0.00 43.12 3.77
73 74 8.342634 CAATATATTAACCTTTCGTCCTGGTTG 58.657 37.037 6.86 0.00 43.12 3.77
74 75 8.050930 ACAATATATTAACCTTTCGTCCTGGTT 58.949 33.333 0.00 0.00 44.98 3.67
75 76 7.571025 ACAATATATTAACCTTTCGTCCTGGT 58.429 34.615 0.00 0.00 35.29 4.00
76 77 8.446599 AACAATATATTAACCTTTCGTCCTGG 57.553 34.615 0.00 0.00 0.00 4.45
77 78 8.557029 GGAACAATATATTAACCTTTCGTCCTG 58.443 37.037 0.00 0.00 0.00 3.86
78 79 7.718314 GGGAACAATATATTAACCTTTCGTCCT 59.282 37.037 0.00 0.00 0.00 3.85
79 80 7.307573 CGGGAACAATATATTAACCTTTCGTCC 60.308 40.741 0.00 0.00 0.00 4.79
80 81 7.307573 CCGGGAACAATATATTAACCTTTCGTC 60.308 40.741 0.00 0.00 0.00 4.20
81 82 6.484308 CCGGGAACAATATATTAACCTTTCGT 59.516 38.462 0.00 0.00 0.00 3.85
82 83 6.484308 ACCGGGAACAATATATTAACCTTTCG 59.516 38.462 6.32 2.53 0.00 3.46
83 84 7.812690 ACCGGGAACAATATATTAACCTTTC 57.187 36.000 6.32 0.00 0.00 2.62
84 85 7.068962 CCAACCGGGAACAATATATTAACCTTT 59.931 37.037 6.32 0.00 40.01 3.11
85 86 6.548251 CCAACCGGGAACAATATATTAACCTT 59.452 38.462 6.32 0.00 40.01 3.50
86 87 6.066032 CCAACCGGGAACAATATATTAACCT 58.934 40.000 6.32 0.00 40.01 3.50
87 88 5.829391 ACCAACCGGGAACAATATATTAACC 59.171 40.000 6.32 2.48 41.15 2.85
88 89 6.238814 CCACCAACCGGGAACAATATATTAAC 60.239 42.308 6.32 0.00 41.15 2.01
89 90 5.828859 CCACCAACCGGGAACAATATATTAA 59.171 40.000 6.32 0.00 41.15 1.40
90 91 5.378332 CCACCAACCGGGAACAATATATTA 58.622 41.667 6.32 0.00 41.15 0.98
91 92 4.211920 CCACCAACCGGGAACAATATATT 58.788 43.478 6.32 0.00 41.15 1.28
92 93 3.827722 CCACCAACCGGGAACAATATAT 58.172 45.455 6.32 0.00 41.15 0.86
93 94 2.684334 GCCACCAACCGGGAACAATATA 60.684 50.000 6.32 0.00 41.15 0.86
94 95 1.958069 GCCACCAACCGGGAACAATAT 60.958 52.381 6.32 0.00 41.15 1.28
95 96 0.609681 GCCACCAACCGGGAACAATA 60.610 55.000 6.32 0.00 41.15 1.90
96 97 1.906333 GCCACCAACCGGGAACAAT 60.906 57.895 6.32 0.00 41.15 2.71
97 98 2.519780 GCCACCAACCGGGAACAA 60.520 61.111 6.32 0.00 41.15 2.83
98 99 3.810188 TGCCACCAACCGGGAACA 61.810 61.111 6.32 0.00 41.15 3.18
99 100 3.292159 GTGCCACCAACCGGGAAC 61.292 66.667 6.32 0.00 41.15 3.62
100 101 4.589675 GGTGCCACCAACCGGGAA 62.590 66.667 9.55 0.00 38.42 3.97
113 114 3.536498 CTTTGGTCGCGGTTGGTGC 62.536 63.158 6.13 0.00 0.00 5.01
114 115 2.637025 CTTTGGTCGCGGTTGGTG 59.363 61.111 6.13 0.00 0.00 4.17
115 116 2.593436 CCTTTGGTCGCGGTTGGT 60.593 61.111 6.13 0.00 0.00 3.67
116 117 4.038080 GCCTTTGGTCGCGGTTGG 62.038 66.667 6.13 1.60 0.00 3.77
117 118 2.551912 AAGCCTTTGGTCGCGGTTG 61.552 57.895 6.13 0.00 0.00 3.77
118 119 2.203294 AAGCCTTTGGTCGCGGTT 60.203 55.556 6.13 0.00 0.00 4.44
119 120 2.978010 CAAGCCTTTGGTCGCGGT 60.978 61.111 6.13 0.00 0.00 5.68
120 121 2.978010 ACAAGCCTTTGGTCGCGG 60.978 61.111 6.13 0.00 38.66 6.46
121 122 2.252260 CACAAGCCTTTGGTCGCG 59.748 61.111 0.00 0.00 38.66 5.87
122 123 2.050077 GCACAAGCCTTTGGTCGC 60.050 61.111 0.00 0.00 38.66 5.19
151 152 1.579084 TAAACATCCAACCGCACCGC 61.579 55.000 0.00 0.00 0.00 5.68
152 153 0.446222 CTAAACATCCAACCGCACCG 59.554 55.000 0.00 0.00 0.00 4.94
153 154 1.467342 GACTAAACATCCAACCGCACC 59.533 52.381 0.00 0.00 0.00 5.01
154 155 1.467342 GGACTAAACATCCAACCGCAC 59.533 52.381 0.00 0.00 36.15 5.34
155 156 1.612199 GGGACTAAACATCCAACCGCA 60.612 52.381 0.00 0.00 38.06 5.69
156 157 1.092348 GGGACTAAACATCCAACCGC 58.908 55.000 0.00 0.00 38.06 5.68
157 158 2.081462 GTGGGACTAAACATCCAACCG 58.919 52.381 0.00 0.00 34.44 4.44
159 160 3.344515 GAGGTGGGACTAAACATCCAAC 58.655 50.000 0.00 0.00 39.22 3.77
160 161 2.027561 CGAGGTGGGACTAAACATCCAA 60.028 50.000 0.00 0.00 38.06 3.53
161 162 1.553248 CGAGGTGGGACTAAACATCCA 59.447 52.381 0.00 0.00 38.06 3.41
162 163 1.742750 GCGAGGTGGGACTAAACATCC 60.743 57.143 0.00 0.00 35.28 3.51
163 164 1.207329 AGCGAGGTGGGACTAAACATC 59.793 52.381 0.00 0.00 0.00 3.06
164 165 1.276622 AGCGAGGTGGGACTAAACAT 58.723 50.000 0.00 0.00 0.00 2.71
165 166 1.822990 CTAGCGAGGTGGGACTAAACA 59.177 52.381 0.00 0.00 0.00 2.83
166 167 1.471153 GCTAGCGAGGTGGGACTAAAC 60.471 57.143 0.00 0.00 0.00 2.01
167 168 0.822164 GCTAGCGAGGTGGGACTAAA 59.178 55.000 0.00 0.00 0.00 1.85
168 169 0.033405 AGCTAGCGAGGTGGGACTAA 60.033 55.000 9.55 0.00 30.28 2.24
169 170 0.752009 CAGCTAGCGAGGTGGGACTA 60.752 60.000 17.16 0.00 45.66 2.59
170 171 2.055042 CAGCTAGCGAGGTGGGACT 61.055 63.158 17.16 0.00 45.66 3.85
171 172 2.496817 CAGCTAGCGAGGTGGGAC 59.503 66.667 17.16 0.00 45.66 4.46
176 177 2.124693 GCCTCTCAGCTAGCGAGGT 61.125 63.158 27.68 3.94 44.83 3.85
177 178 2.727544 GCCTCTCAGCTAGCGAGG 59.272 66.667 24.95 24.95 45.59 4.63
178 179 1.795170 GAGGCCTCTCAGCTAGCGAG 61.795 65.000 26.25 22.56 39.74 5.03
179 180 1.826054 GAGGCCTCTCAGCTAGCGA 60.826 63.158 26.25 8.97 39.74 4.93
180 181 2.124060 TGAGGCCTCTCAGCTAGCG 61.124 63.158 32.28 4.60 44.39 4.26
181 182 3.947173 TGAGGCCTCTCAGCTAGC 58.053 61.111 32.28 6.62 44.39 3.42
188 189 0.980423 AACCACTCTTGAGGCCTCTC 59.020 55.000 32.28 9.89 40.36 3.20
189 190 1.439543 AAACCACTCTTGAGGCCTCT 58.560 50.000 32.28 10.16 0.00 3.69
190 191 3.636153 ATAAACCACTCTTGAGGCCTC 57.364 47.619 26.78 26.78 0.00 4.70
191 192 7.394144 AATATATAAACCACTCTTGAGGCCT 57.606 36.000 3.86 3.86 0.00 5.19
192 193 7.175119 GGAAATATATAAACCACTCTTGAGGCC 59.825 40.741 0.00 0.00 0.00 5.19
193 194 7.939588 AGGAAATATATAAACCACTCTTGAGGC 59.060 37.037 2.55 0.00 0.00 4.70
194 195 9.495572 GAGGAAATATATAAACCACTCTTGAGG 57.504 37.037 2.55 0.00 0.00 3.86
217 218 8.863049 GCATGACAAATATGTTAAAAGTTGAGG 58.137 33.333 0.00 0.00 40.74 3.86
218 219 8.863049 GGCATGACAAATATGTTAAAAGTTGAG 58.137 33.333 0.00 0.00 40.74 3.02
219 220 8.584157 AGGCATGACAAATATGTTAAAAGTTGA 58.416 29.630 0.00 0.00 40.74 3.18
220 221 8.761575 AGGCATGACAAATATGTTAAAAGTTG 57.238 30.769 0.00 0.00 40.74 3.16
221 222 7.754924 CGAGGCATGACAAATATGTTAAAAGTT 59.245 33.333 0.00 0.00 40.74 2.66
222 223 7.094377 ACGAGGCATGACAAATATGTTAAAAGT 60.094 33.333 0.00 0.00 40.74 2.66
223 224 7.250569 ACGAGGCATGACAAATATGTTAAAAG 58.749 34.615 0.00 0.00 40.74 2.27
224 225 7.094592 TGACGAGGCATGACAAATATGTTAAAA 60.095 33.333 0.00 0.00 40.74 1.52
225 226 6.372937 TGACGAGGCATGACAAATATGTTAAA 59.627 34.615 0.00 0.00 40.74 1.52
226 227 5.877564 TGACGAGGCATGACAAATATGTTAA 59.122 36.000 0.00 0.00 40.74 2.01
227 228 5.423886 TGACGAGGCATGACAAATATGTTA 58.576 37.500 0.00 0.00 40.74 2.41
228 229 4.260985 TGACGAGGCATGACAAATATGTT 58.739 39.130 0.00 0.00 40.74 2.71
229 230 3.872696 TGACGAGGCATGACAAATATGT 58.127 40.909 0.00 0.00 44.25 2.29
230 231 4.512571 TGATGACGAGGCATGACAAATATG 59.487 41.667 0.00 0.00 0.00 1.78
231 232 4.707105 TGATGACGAGGCATGACAAATAT 58.293 39.130 0.00 0.00 0.00 1.28
232 233 4.135747 TGATGACGAGGCATGACAAATA 57.864 40.909 0.00 0.00 0.00 1.40
233 234 2.989909 TGATGACGAGGCATGACAAAT 58.010 42.857 0.00 0.00 0.00 2.32
234 235 2.470983 TGATGACGAGGCATGACAAA 57.529 45.000 0.00 0.00 0.00 2.83
235 236 2.470983 TTGATGACGAGGCATGACAA 57.529 45.000 0.00 0.00 0.00 3.18
236 237 2.470983 TTTGATGACGAGGCATGACA 57.529 45.000 0.00 0.00 0.00 3.58
237 238 4.025396 CACTATTTGATGACGAGGCATGAC 60.025 45.833 0.00 0.00 0.00 3.06
238 239 4.122046 CACTATTTGATGACGAGGCATGA 58.878 43.478 0.00 0.00 0.00 3.07
239 240 3.873361 ACACTATTTGATGACGAGGCATG 59.127 43.478 0.00 0.00 0.00 4.06
240 241 4.142609 ACACTATTTGATGACGAGGCAT 57.857 40.909 0.00 0.00 0.00 4.40
241 242 3.610040 ACACTATTTGATGACGAGGCA 57.390 42.857 0.00 0.00 0.00 4.75
242 243 5.289595 TGATACACTATTTGATGACGAGGC 58.710 41.667 0.00 0.00 0.00 4.70
243 244 7.148902 CGATTGATACACTATTTGATGACGAGG 60.149 40.741 0.00 0.00 0.00 4.63
244 245 7.591426 TCGATTGATACACTATTTGATGACGAG 59.409 37.037 0.00 0.00 0.00 4.18
245 246 7.422399 TCGATTGATACACTATTTGATGACGA 58.578 34.615 0.00 0.00 0.00 4.20
246 247 7.623268 TCGATTGATACACTATTTGATGACG 57.377 36.000 0.00 0.00 0.00 4.35
256 257 7.014326 AGAGGCACTTATTCGATTGATACACTA 59.986 37.037 0.00 0.00 41.55 2.74
345 347 9.702494 GAGATTCAATCCAACAAAAAGAAGATT 57.298 29.630 0.00 0.00 0.00 2.40
347 349 8.236585 TGAGATTCAATCCAACAAAAAGAAGA 57.763 30.769 0.00 0.00 0.00 2.87
385 389 5.770663 TCGGAACACAAATAATTCCTTTGGA 59.229 36.000 14.48 0.00 39.89 3.53
396 400 6.205658 TGTCATGACAATTCGGAACACAAATA 59.794 34.615 26.02 0.00 38.56 1.40
403 407 4.944962 TGATGTCATGACAATTCGGAAC 57.055 40.909 31.00 14.83 45.41 3.62
406 410 4.090729 CGTTTGATGTCATGACAATTCGG 58.909 43.478 31.00 15.37 45.41 4.30
461 466 5.416952 AGGCCACTTTGATTCATAGAAACAG 59.583 40.000 5.01 0.00 0.00 3.16
524 545 8.731605 TGAATTTTCAACACGGCTAATTACATA 58.268 29.630 0.00 0.00 33.55 2.29
525 546 7.598278 TGAATTTTCAACACGGCTAATTACAT 58.402 30.769 0.00 0.00 33.55 2.29
621 1837 7.069950 AGGTGGATAATTTTTGAGATAAAGGCC 59.930 37.037 0.00 0.00 0.00 5.19
632 1851 6.799925 GTGTAACACGAGGTGGATAATTTTTG 59.200 38.462 0.42 0.00 37.94 2.44
663 1882 8.774890 TTACTTAAATATTACTTGGCGTCACA 57.225 30.769 0.00 0.00 0.00 3.58
759 1989 5.121768 CCGACCTTGGTTTAAATAGACTGTG 59.878 44.000 0.00 0.00 0.00 3.66
834 2067 5.272167 TCTTTACTTAATTTGGCGTCACG 57.728 39.130 0.00 0.00 0.00 4.35
862 2095 4.036971 CGGCTGAAGTTGATAGTAGTAGCT 59.963 45.833 0.00 0.00 0.00 3.32
863 2096 4.202030 ACGGCTGAAGTTGATAGTAGTAGC 60.202 45.833 0.00 0.00 0.00 3.58
885 2119 5.354767 CGGGGTTTAAATAGACTCTACCAC 58.645 45.833 0.00 0.00 0.00 4.16
889 2123 5.206587 AGAGCGGGGTTTAAATAGACTCTA 58.793 41.667 8.21 0.00 30.54 2.43
891 2125 4.370049 GAGAGCGGGGTTTAAATAGACTC 58.630 47.826 0.00 0.00 0.00 3.36
963 2197 2.352960 GGATCGATCACTGGCTGTTTTC 59.647 50.000 25.93 0.96 0.00 2.29
1290 2542 1.594310 GTTGAGGCGGAAGAGCTCT 59.406 57.895 11.45 11.45 37.29 4.09
1350 2602 2.357517 GACGTCTGGCTGTGGTGG 60.358 66.667 8.70 0.00 0.00 4.61
2890 4207 0.179084 TGGCGCCTAGTCATAGCAAC 60.179 55.000 29.70 0.00 0.00 4.17
3186 4504 1.145738 AGTGCCCAAAATGTCTGAGGT 59.854 47.619 0.00 0.00 0.00 3.85
3192 4510 2.893489 AGGAAAGAGTGCCCAAAATGTC 59.107 45.455 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.