Multiple sequence alignment - TraesCS7B01G456200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G456200 | chr7B | 100.000 | 3434 | 0 | 0 | 1 | 3434 | 716565844 | 716569277 | 0.000000e+00 | 6342.0 |
1 | TraesCS7B01G456200 | chr7B | 92.578 | 2304 | 121 | 31 | 508 | 2793 | 716650067 | 716652338 | 0.000000e+00 | 3262.0 |
2 | TraesCS7B01G456200 | chr7B | 99.840 | 1250 | 2 | 0 | 1641 | 2890 | 716581133 | 716582382 | 0.000000e+00 | 2298.0 |
3 | TraesCS7B01G456200 | chr7B | 97.196 | 642 | 18 | 0 | 2793 | 3434 | 716652373 | 716653014 | 0.000000e+00 | 1086.0 |
4 | TraesCS7B01G456200 | chr7B | 87.523 | 545 | 49 | 9 | 2122 | 2666 | 716661980 | 716662505 | 2.270000e-171 | 612.0 |
5 | TraesCS7B01G456200 | chr7B | 88.235 | 51 | 4 | 2 | 287 | 335 | 67836621 | 67836571 | 3.700000e-05 | 60.2 |
6 | TraesCS7B01G456200 | chrUn | 99.554 | 1794 | 8 | 0 | 1641 | 3434 | 224999414 | 224997621 | 0.000000e+00 | 3269.0 |
7 | TraesCS7B01G456200 | chrUn | 99.840 | 1250 | 2 | 0 | 1641 | 2890 | 370758091 | 370759340 | 0.000000e+00 | 2298.0 |
8 | TraesCS7B01G456200 | chrUn | 100.000 | 383 | 0 | 0 | 2508 | 2890 | 231064775 | 231065157 | 0.000000e+00 | 708.0 |
9 | TraesCS7B01G456200 | chrUn | 83.673 | 196 | 22 | 6 | 1 | 194 | 124576622 | 124576809 | 3.520000e-40 | 176.0 |
10 | TraesCS7B01G456200 | chrUn | 81.553 | 206 | 26 | 7 | 8 | 212 | 108344041 | 108343847 | 3.550000e-35 | 159.0 |
11 | TraesCS7B01G456200 | chrUn | 87.324 | 142 | 12 | 3 | 54 | 195 | 28373740 | 28373875 | 1.280000e-34 | 158.0 |
12 | TraesCS7B01G456200 | chrUn | 81.283 | 187 | 28 | 4 | 5 | 191 | 231696341 | 231696162 | 9.930000e-31 | 145.0 |
13 | TraesCS7B01G456200 | chrUn | 78.605 | 215 | 34 | 8 | 1 | 212 | 216636399 | 216636194 | 7.730000e-27 | 132.0 |
14 | TraesCS7B01G456200 | chrUn | 84.058 | 138 | 20 | 1 | 54 | 191 | 464390453 | 464390588 | 7.730000e-27 | 132.0 |
15 | TraesCS7B01G456200 | chrUn | 90.110 | 91 | 8 | 1 | 102 | 192 | 468125918 | 468125829 | 2.170000e-22 | 117.0 |
16 | TraesCS7B01G456200 | chrUn | 90.000 | 90 | 9 | 0 | 102 | 191 | 474645882 | 474645793 | 2.170000e-22 | 117.0 |
17 | TraesCS7B01G456200 | chrUn | 88.889 | 90 | 10 | 0 | 102 | 191 | 469520051 | 469520140 | 1.010000e-20 | 111.0 |
18 | TraesCS7B01G456200 | chrUn | 86.420 | 81 | 8 | 3 | 54 | 134 | 95795462 | 95795385 | 6.110000e-13 | 86.1 |
19 | TraesCS7B01G456200 | chrUn | 85.714 | 77 | 9 | 1 | 54 | 130 | 1893475 | 1893549 | 2.840000e-11 | 80.5 |
20 | TraesCS7B01G456200 | chrUn | 85.714 | 77 | 7 | 3 | 54 | 130 | 306553268 | 306553196 | 1.020000e-10 | 78.7 |
21 | TraesCS7B01G456200 | chrUn | 84.337 | 83 | 7 | 5 | 54 | 134 | 203362973 | 203363051 | 3.670000e-10 | 76.8 |
22 | TraesCS7B01G456200 | chrUn | 85.714 | 70 | 9 | 1 | 54 | 123 | 283143282 | 283143214 | 4.750000e-09 | 73.1 |
23 | TraesCS7B01G456200 | chrUn | 80.460 | 87 | 15 | 2 | 54 | 140 | 311444574 | 311444490 | 7.950000e-07 | 65.8 |
24 | TraesCS7B01G456200 | chrUn | 80.460 | 87 | 15 | 2 | 54 | 140 | 473070898 | 473070982 | 7.950000e-07 | 65.8 |
25 | TraesCS7B01G456200 | chrUn | 97.297 | 37 | 1 | 0 | 53 | 89 | 94752063 | 94752027 | 2.860000e-06 | 63.9 |
26 | TraesCS7B01G456200 | chrUn | 81.818 | 77 | 11 | 3 | 54 | 130 | 28810140 | 28810213 | 1.030000e-05 | 62.1 |
27 | TraesCS7B01G456200 | chr7D | 92.007 | 1664 | 88 | 25 | 244 | 1883 | 619895952 | 619894310 | 0.000000e+00 | 2294.0 |
28 | TraesCS7B01G456200 | chr7D | 88.303 | 607 | 47 | 12 | 2074 | 2666 | 619894249 | 619893653 | 0.000000e+00 | 706.0 |
29 | TraesCS7B01G456200 | chr7D | 86.667 | 585 | 68 | 6 | 2082 | 2666 | 619999375 | 619998801 | 1.040000e-179 | 640.0 |
30 | TraesCS7B01G456200 | chr7D | 91.639 | 299 | 25 | 0 | 1526 | 1824 | 619999736 | 619999438 | 6.860000e-112 | 414.0 |
31 | TraesCS7B01G456200 | chr7D | 90.763 | 249 | 23 | 0 | 2793 | 3041 | 85356814 | 85357062 | 1.980000e-87 | 333.0 |
32 | TraesCS7B01G456200 | chr7D | 84.906 | 212 | 26 | 2 | 1 | 212 | 32768928 | 32769133 | 3.470000e-50 | 209.0 |
33 | TraesCS7B01G456200 | chr7A | 92.563 | 1358 | 86 | 13 | 530 | 1883 | 715224075 | 715225421 | 0.000000e+00 | 1934.0 |
34 | TraesCS7B01G456200 | chr7A | 92.171 | 562 | 28 | 9 | 2115 | 2666 | 715225550 | 715226105 | 0.000000e+00 | 780.0 |
35 | TraesCS7B01G456200 | chr7A | 87.541 | 305 | 18 | 9 | 249 | 536 | 715222598 | 715222899 | 5.490000e-88 | 335.0 |
36 | TraesCS7B01G456200 | chr4B | 85.990 | 828 | 106 | 3 | 995 | 1813 | 70999392 | 70998566 | 0.000000e+00 | 878.0 |
37 | TraesCS7B01G456200 | chr4D | 85.749 | 828 | 109 | 4 | 995 | 1813 | 48121587 | 48120760 | 0.000000e+00 | 867.0 |
38 | TraesCS7B01G456200 | chr4D | 84.293 | 191 | 24 | 3 | 1 | 191 | 342906645 | 342906461 | 7.570000e-42 | 182.0 |
39 | TraesCS7B01G456200 | chr4D | 80.000 | 195 | 28 | 6 | 1 | 195 | 31026136 | 31026319 | 2.150000e-27 | 134.0 |
40 | TraesCS7B01G456200 | chr4D | 87.069 | 116 | 14 | 1 | 97 | 212 | 479507566 | 479507452 | 2.780000e-26 | 130.0 |
41 | TraesCS7B01G456200 | chr4D | 92.222 | 90 | 7 | 0 | 102 | 191 | 488558481 | 488558392 | 1.000000e-25 | 128.0 |
42 | TraesCS7B01G456200 | chr4D | 77.889 | 199 | 29 | 9 | 1 | 199 | 4993202 | 4993019 | 3.620000e-20 | 110.0 |
43 | TraesCS7B01G456200 | chr4D | 88.235 | 85 | 6 | 1 | 5 | 89 | 503212893 | 503212813 | 7.840000e-17 | 99.0 |
44 | TraesCS7B01G456200 | chr4D | 86.420 | 81 | 8 | 3 | 54 | 134 | 503766881 | 503766804 | 6.110000e-13 | 86.1 |
45 | TraesCS7B01G456200 | chr4D | 84.706 | 85 | 9 | 1 | 5 | 89 | 505221413 | 505221493 | 7.900000e-12 | 82.4 |
46 | TraesCS7B01G456200 | chr3B | 87.383 | 642 | 79 | 2 | 2793 | 3434 | 216080987 | 216080348 | 0.000000e+00 | 736.0 |
47 | TraesCS7B01G456200 | chr3A | 86.385 | 639 | 83 | 3 | 2797 | 3434 | 674081104 | 674081739 | 0.000000e+00 | 695.0 |
48 | TraesCS7B01G456200 | chr3A | 90.726 | 248 | 23 | 0 | 2793 | 3040 | 423236847 | 423236600 | 7.100000e-87 | 331.0 |
49 | TraesCS7B01G456200 | chr3D | 90.890 | 483 | 42 | 2 | 2951 | 3432 | 8916740 | 8917221 | 0.000000e+00 | 647.0 |
50 | TraesCS7B01G456200 | chr3D | 89.876 | 484 | 49 | 0 | 2951 | 3434 | 576265958 | 576266441 | 1.050000e-174 | 623.0 |
51 | TraesCS7B01G456200 | chr5A | 89.938 | 487 | 47 | 2 | 2946 | 3432 | 83064225 | 83063741 | 8.090000e-176 | 627.0 |
52 | TraesCS7B01G456200 | chr5D | 89.918 | 486 | 46 | 3 | 2951 | 3434 | 483237048 | 483237532 | 1.050000e-174 | 623.0 |
53 | TraesCS7B01G456200 | chr5D | 85.417 | 192 | 21 | 3 | 3 | 193 | 558838113 | 558838298 | 3.500000e-45 | 193.0 |
54 | TraesCS7B01G456200 | chr5D | 82.723 | 191 | 26 | 4 | 1 | 191 | 2100398 | 2100581 | 2.740000e-36 | 163.0 |
55 | TraesCS7B01G456200 | chr5D | 80.808 | 198 | 30 | 4 | 2 | 198 | 440332171 | 440331981 | 7.680000e-32 | 148.0 |
56 | TraesCS7B01G456200 | chr5D | 89.474 | 57 | 4 | 2 | 287 | 341 | 485938210 | 485938154 | 1.710000e-08 | 71.3 |
57 | TraesCS7B01G456200 | chr2B | 89.409 | 491 | 43 | 6 | 2946 | 3434 | 324628921 | 324628438 | 8.150000e-171 | 610.0 |
58 | TraesCS7B01G456200 | chr2B | 83.019 | 212 | 28 | 4 | 2 | 212 | 191894855 | 191895059 | 5.850000e-43 | 185.0 |
59 | TraesCS7B01G456200 | chr6B | 91.275 | 298 | 26 | 0 | 2793 | 3090 | 142069331 | 142069034 | 1.150000e-109 | 407.0 |
60 | TraesCS7B01G456200 | chr6B | 82.160 | 213 | 28 | 7 | 1 | 212 | 659339900 | 659339697 | 1.270000e-39 | 174.0 |
61 | TraesCS7B01G456200 | chr2A | 87.683 | 341 | 31 | 3 | 2793 | 3133 | 753264280 | 753263951 | 1.490000e-103 | 387.0 |
62 | TraesCS7B01G456200 | chr2A | 87.973 | 291 | 28 | 4 | 2667 | 2957 | 725064918 | 725064635 | 1.530000e-88 | 337.0 |
63 | TraesCS7B01G456200 | chr2A | 94.872 | 39 | 1 | 1 | 287 | 324 | 694150370 | 694150408 | 3.700000e-05 | 60.2 |
64 | TraesCS7B01G456200 | chr2D | 85.859 | 198 | 22 | 4 | 1 | 198 | 456686118 | 456685927 | 4.490000e-49 | 206.0 |
65 | TraesCS7B01G456200 | chr2D | 83.886 | 211 | 26 | 5 | 2 | 212 | 382046093 | 382046295 | 9.720000e-46 | 195.0 |
66 | TraesCS7B01G456200 | chr2D | 81.776 | 214 | 29 | 6 | 1 | 212 | 605489286 | 605489081 | 1.640000e-38 | 171.0 |
67 | TraesCS7B01G456200 | chr2D | 92.000 | 50 | 3 | 1 | 287 | 335 | 624184929 | 624184978 | 6.150000e-08 | 69.4 |
68 | TraesCS7B01G456200 | chr1B | 95.312 | 128 | 6 | 0 | 2667 | 2794 | 190279940 | 190280067 | 1.620000e-48 | 204.0 |
69 | TraesCS7B01G456200 | chr1B | 80.189 | 212 | 32 | 8 | 2 | 212 | 569223409 | 569223611 | 2.130000e-32 | 150.0 |
70 | TraesCS7B01G456200 | chr1B | 91.111 | 45 | 2 | 1 | 287 | 329 | 332089172 | 332089216 | 3.700000e-05 | 60.2 |
71 | TraesCS7B01G456200 | chr1B | 100.000 | 28 | 0 | 0 | 2003 | 2030 | 95662174 | 95662201 | 6.000000e-03 | 52.8 |
72 | TraesCS7B01G456200 | chr5B | 83.491 | 212 | 29 | 3 | 1 | 212 | 528841513 | 528841308 | 3.500000e-45 | 193.0 |
73 | TraesCS7B01G456200 | chr5B | 83.684 | 190 | 25 | 3 | 2 | 191 | 19164662 | 19164845 | 1.270000e-39 | 174.0 |
74 | TraesCS7B01G456200 | chr6D | 85.027 | 187 | 23 | 2 | 5 | 191 | 11958712 | 11958531 | 5.850000e-43 | 185.0 |
75 | TraesCS7B01G456200 | chr6D | 77.934 | 213 | 30 | 11 | 1 | 212 | 441408255 | 441408451 | 2.170000e-22 | 117.0 |
76 | TraesCS7B01G456200 | chr6D | 86.420 | 81 | 8 | 3 | 54 | 134 | 443232761 | 443232684 | 6.110000e-13 | 86.1 |
77 | TraesCS7B01G456200 | chr6D | 86.250 | 80 | 8 | 3 | 55 | 134 | 465262341 | 465262265 | 2.200000e-12 | 84.2 |
78 | TraesCS7B01G456200 | chr6D | 84.337 | 83 | 11 | 2 | 54 | 136 | 870613 | 870533 | 2.840000e-11 | 80.5 |
79 | TraesCS7B01G456200 | chr6D | 85.185 | 81 | 8 | 1 | 1 | 81 | 359725221 | 359725145 | 2.840000e-11 | 80.5 |
80 | TraesCS7B01G456200 | chr6D | 85.714 | 77 | 9 | 1 | 54 | 130 | 426754345 | 426754271 | 2.840000e-11 | 80.5 |
81 | TraesCS7B01G456200 | chr1D | 83.838 | 198 | 26 | 3 | 1 | 198 | 173001703 | 173001512 | 2.100000e-42 | 183.0 |
82 | TraesCS7B01G456200 | chr1D | 82.723 | 191 | 27 | 3 | 1 | 191 | 306361125 | 306361309 | 7.620000e-37 | 165.0 |
83 | TraesCS7B01G456200 | chr1D | 85.000 | 160 | 19 | 5 | 54 | 212 | 416709073 | 416708918 | 1.280000e-34 | 158.0 |
84 | TraesCS7B01G456200 | chr1D | 86.667 | 135 | 16 | 1 | 57 | 191 | 2058249 | 2058117 | 7.680000e-32 | 148.0 |
85 | TraesCS7B01G456200 | chr1D | 89.565 | 115 | 12 | 0 | 98 | 212 | 31928471 | 31928357 | 2.760000e-31 | 147.0 |
86 | TraesCS7B01G456200 | chr1D | 78.974 | 195 | 29 | 5 | 1 | 195 | 440995777 | 440995959 | 4.650000e-24 | 122.0 |
87 | TraesCS7B01G456200 | chr6A | 80.976 | 205 | 32 | 3 | 8 | 212 | 499568920 | 499568723 | 4.590000e-34 | 156.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G456200 | chr7B | 716565844 | 716569277 | 3433 | False | 6342.000000 | 6342 | 100.000000 | 1 | 3434 | 1 | chr7B.!!$F1 | 3433 |
1 | TraesCS7B01G456200 | chr7B | 716581133 | 716582382 | 1249 | False | 2298.000000 | 2298 | 99.840000 | 1641 | 2890 | 1 | chr7B.!!$F2 | 1249 |
2 | TraesCS7B01G456200 | chr7B | 716650067 | 716653014 | 2947 | False | 2174.000000 | 3262 | 94.887000 | 508 | 3434 | 2 | chr7B.!!$F4 | 2926 |
3 | TraesCS7B01G456200 | chr7B | 716661980 | 716662505 | 525 | False | 612.000000 | 612 | 87.523000 | 2122 | 2666 | 1 | chr7B.!!$F3 | 544 |
4 | TraesCS7B01G456200 | chrUn | 224997621 | 224999414 | 1793 | True | 3269.000000 | 3269 | 99.554000 | 1641 | 3434 | 1 | chrUn.!!$R5 | 1793 |
5 | TraesCS7B01G456200 | chrUn | 370758091 | 370759340 | 1249 | False | 2298.000000 | 2298 | 99.840000 | 1641 | 2890 | 1 | chrUn.!!$F7 | 1249 |
6 | TraesCS7B01G456200 | chr7D | 619893653 | 619895952 | 2299 | True | 1500.000000 | 2294 | 90.155000 | 244 | 2666 | 2 | chr7D.!!$R1 | 2422 |
7 | TraesCS7B01G456200 | chr7D | 619998801 | 619999736 | 935 | True | 527.000000 | 640 | 89.153000 | 1526 | 2666 | 2 | chr7D.!!$R2 | 1140 |
8 | TraesCS7B01G456200 | chr7A | 715222598 | 715226105 | 3507 | False | 1016.333333 | 1934 | 90.758333 | 249 | 2666 | 3 | chr7A.!!$F1 | 2417 |
9 | TraesCS7B01G456200 | chr4B | 70998566 | 70999392 | 826 | True | 878.000000 | 878 | 85.990000 | 995 | 1813 | 1 | chr4B.!!$R1 | 818 |
10 | TraesCS7B01G456200 | chr4D | 48120760 | 48121587 | 827 | True | 867.000000 | 867 | 85.749000 | 995 | 1813 | 1 | chr4D.!!$R2 | 818 |
11 | TraesCS7B01G456200 | chr3B | 216080348 | 216080987 | 639 | True | 736.000000 | 736 | 87.383000 | 2793 | 3434 | 1 | chr3B.!!$R1 | 641 |
12 | TraesCS7B01G456200 | chr3A | 674081104 | 674081739 | 635 | False | 695.000000 | 695 | 86.385000 | 2797 | 3434 | 1 | chr3A.!!$F1 | 637 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
632 | 1851 | 0.032267 | CGACCTCGGGCCTTTATCTC | 59.968 | 60.0 | 0.84 | 0.0 | 35.37 | 2.75 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2890 | 4207 | 0.179084 | TGGCGCCTAGTCATAGCAAC | 60.179 | 55.0 | 29.7 | 0.0 | 0.0 | 4.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 4.074647 | GACCTTTGGTCCCGGTTG | 57.925 | 61.111 | 0.00 | 0.00 | 46.19 | 3.77 |
20 | 21 | 1.602605 | GACCTTTGGTCCCGGTTGG | 60.603 | 63.158 | 0.00 | 0.00 | 46.19 | 3.77 |
21 | 22 | 2.347691 | GACCTTTGGTCCCGGTTGGT | 62.348 | 60.000 | 0.00 | 0.00 | 46.19 | 3.67 |
22 | 23 | 1.901464 | CCTTTGGTCCCGGTTGGTG | 60.901 | 63.158 | 0.00 | 0.00 | 34.77 | 4.17 |
23 | 24 | 1.901464 | CTTTGGTCCCGGTTGGTGG | 60.901 | 63.158 | 0.00 | 0.00 | 34.77 | 4.61 |
24 | 25 | 4.589675 | TTGGTCCCGGTTGGTGGC | 62.590 | 66.667 | 0.00 | 0.00 | 34.77 | 5.01 |
26 | 27 | 4.360405 | GGTCCCGGTTGGTGGCAT | 62.360 | 66.667 | 0.00 | 0.00 | 34.77 | 4.40 |
27 | 28 | 3.061848 | GTCCCGGTTGGTGGCATG | 61.062 | 66.667 | 0.00 | 0.00 | 34.77 | 4.06 |
28 | 29 | 4.358841 | TCCCGGTTGGTGGCATGG | 62.359 | 66.667 | 0.00 | 0.00 | 34.77 | 3.66 |
29 | 30 | 4.358841 | CCCGGTTGGTGGCATGGA | 62.359 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
30 | 31 | 3.061848 | CCGGTTGGTGGCATGGAC | 61.062 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
31 | 32 | 2.034066 | CGGTTGGTGGCATGGACT | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
32 | 33 | 2.334946 | CGGTTGGTGGCATGGACTG | 61.335 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
33 | 34 | 1.978617 | GGTTGGTGGCATGGACTGG | 60.979 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
34 | 35 | 1.978617 | GTTGGTGGCATGGACTGGG | 60.979 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
35 | 36 | 2.159490 | TTGGTGGCATGGACTGGGA | 61.159 | 57.895 | 0.00 | 0.00 | 0.00 | 4.37 |
36 | 37 | 2.044946 | GGTGGCATGGACTGGGAC | 60.045 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
37 | 38 | 2.606587 | GGTGGCATGGACTGGGACT | 61.607 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
38 | 39 | 1.271840 | GGTGGCATGGACTGGGACTA | 61.272 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
39 | 40 | 0.618458 | GTGGCATGGACTGGGACTAA | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
40 | 41 | 1.004277 | GTGGCATGGACTGGGACTAAA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
41 | 42 | 1.281867 | TGGCATGGACTGGGACTAAAG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
42 | 43 | 1.408822 | GGCATGGACTGGGACTAAAGG | 60.409 | 57.143 | 0.00 | 0.00 | 0.00 | 3.11 |
43 | 44 | 1.408822 | GCATGGACTGGGACTAAAGGG | 60.409 | 57.143 | 0.00 | 0.00 | 0.00 | 3.95 |
44 | 45 | 1.212935 | CATGGACTGGGACTAAAGGGG | 59.787 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
45 | 46 | 0.549169 | TGGACTGGGACTAAAGGGGG | 60.549 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
63 | 64 | 2.447408 | GGGAATTAATTGGTCCCGGT | 57.553 | 50.000 | 5.17 | 0.00 | 41.70 | 5.28 |
64 | 65 | 2.742348 | GGGAATTAATTGGTCCCGGTT | 58.258 | 47.619 | 5.17 | 0.00 | 41.70 | 4.44 |
65 | 66 | 2.429250 | GGGAATTAATTGGTCCCGGTTG | 59.571 | 50.000 | 5.17 | 0.00 | 41.70 | 3.77 |
66 | 67 | 2.429250 | GGAATTAATTGGTCCCGGTTGG | 59.571 | 50.000 | 5.17 | 0.00 | 0.00 | 3.77 |
67 | 68 | 2.911552 | ATTAATTGGTCCCGGTTGGT | 57.088 | 45.000 | 0.00 | 0.00 | 34.77 | 3.67 |
68 | 69 | 1.912417 | TTAATTGGTCCCGGTTGGTG | 58.088 | 50.000 | 0.00 | 0.00 | 34.77 | 4.17 |
69 | 70 | 0.609681 | TAATTGGTCCCGGTTGGTGC | 60.610 | 55.000 | 0.00 | 0.00 | 34.77 | 5.01 |
70 | 71 | 3.879180 | ATTGGTCCCGGTTGGTGCC | 62.879 | 63.158 | 0.00 | 0.00 | 34.77 | 5.01 |
82 | 83 | 2.597510 | GGTGCCACCAACCAGGAC | 60.598 | 66.667 | 9.55 | 0.00 | 41.22 | 3.85 |
83 | 84 | 2.978010 | GTGCCACCAACCAGGACG | 60.978 | 66.667 | 0.00 | 0.00 | 41.22 | 4.79 |
84 | 85 | 3.164977 | TGCCACCAACCAGGACGA | 61.165 | 61.111 | 0.00 | 0.00 | 41.22 | 4.20 |
85 | 86 | 2.112297 | GCCACCAACCAGGACGAA | 59.888 | 61.111 | 0.00 | 0.00 | 41.22 | 3.85 |
86 | 87 | 1.527380 | GCCACCAACCAGGACGAAA | 60.527 | 57.895 | 0.00 | 0.00 | 41.22 | 3.46 |
87 | 88 | 1.515521 | GCCACCAACCAGGACGAAAG | 61.516 | 60.000 | 0.00 | 0.00 | 41.22 | 2.62 |
88 | 89 | 0.889186 | CCACCAACCAGGACGAAAGG | 60.889 | 60.000 | 0.00 | 0.00 | 41.22 | 3.11 |
89 | 90 | 0.179029 | CACCAACCAGGACGAAAGGT | 60.179 | 55.000 | 0.00 | 0.00 | 41.22 | 3.50 |
90 | 91 | 0.549469 | ACCAACCAGGACGAAAGGTT | 59.451 | 50.000 | 0.00 | 0.00 | 46.03 | 3.50 |
91 | 92 | 1.770061 | ACCAACCAGGACGAAAGGTTA | 59.230 | 47.619 | 0.00 | 0.00 | 43.43 | 2.85 |
92 | 93 | 2.173143 | ACCAACCAGGACGAAAGGTTAA | 59.827 | 45.455 | 0.00 | 0.00 | 43.43 | 2.01 |
93 | 94 | 3.181437 | ACCAACCAGGACGAAAGGTTAAT | 60.181 | 43.478 | 0.00 | 0.00 | 43.43 | 1.40 |
94 | 95 | 4.041938 | ACCAACCAGGACGAAAGGTTAATA | 59.958 | 41.667 | 0.00 | 0.00 | 43.43 | 0.98 |
95 | 96 | 5.190677 | CCAACCAGGACGAAAGGTTAATAT | 58.809 | 41.667 | 0.00 | 0.00 | 43.43 | 1.28 |
96 | 97 | 6.070078 | ACCAACCAGGACGAAAGGTTAATATA | 60.070 | 38.462 | 0.00 | 0.00 | 43.43 | 0.86 |
97 | 98 | 6.996282 | CCAACCAGGACGAAAGGTTAATATAT | 59.004 | 38.462 | 0.00 | 0.00 | 43.43 | 0.86 |
98 | 99 | 7.501225 | CCAACCAGGACGAAAGGTTAATATATT | 59.499 | 37.037 | 2.97 | 2.97 | 43.43 | 1.28 |
99 | 100 | 8.342634 | CAACCAGGACGAAAGGTTAATATATTG | 58.657 | 37.037 | 8.28 | 0.00 | 43.43 | 1.90 |
100 | 101 | 7.571025 | ACCAGGACGAAAGGTTAATATATTGT | 58.429 | 34.615 | 8.28 | 0.00 | 29.58 | 2.71 |
101 | 102 | 8.050930 | ACCAGGACGAAAGGTTAATATATTGTT | 58.949 | 33.333 | 8.28 | 0.00 | 29.58 | 2.83 |
102 | 103 | 8.557029 | CCAGGACGAAAGGTTAATATATTGTTC | 58.443 | 37.037 | 8.28 | 3.72 | 0.00 | 3.18 |
103 | 104 | 8.557029 | CAGGACGAAAGGTTAATATATTGTTCC | 58.443 | 37.037 | 8.28 | 7.55 | 0.00 | 3.62 |
104 | 105 | 7.718314 | AGGACGAAAGGTTAATATATTGTTCCC | 59.282 | 37.037 | 8.28 | 2.96 | 0.00 | 3.97 |
105 | 106 | 7.307573 | GGACGAAAGGTTAATATATTGTTCCCG | 60.308 | 40.741 | 8.28 | 8.73 | 0.00 | 5.14 |
106 | 107 | 6.484308 | ACGAAAGGTTAATATATTGTTCCCGG | 59.516 | 38.462 | 8.28 | 0.00 | 0.00 | 5.73 |
107 | 108 | 6.484308 | CGAAAGGTTAATATATTGTTCCCGGT | 59.516 | 38.462 | 8.28 | 0.00 | 0.00 | 5.28 |
108 | 109 | 7.012610 | CGAAAGGTTAATATATTGTTCCCGGTT | 59.987 | 37.037 | 8.28 | 3.33 | 0.00 | 4.44 |
109 | 110 | 7.576861 | AAGGTTAATATATTGTTCCCGGTTG | 57.423 | 36.000 | 8.28 | 0.00 | 0.00 | 3.77 |
110 | 111 | 6.066032 | AGGTTAATATATTGTTCCCGGTTGG | 58.934 | 40.000 | 8.28 | 0.00 | 0.00 | 3.77 |
111 | 112 | 5.829391 | GGTTAATATATTGTTCCCGGTTGGT | 59.171 | 40.000 | 8.28 | 0.00 | 34.77 | 3.67 |
112 | 113 | 6.238814 | GGTTAATATATTGTTCCCGGTTGGTG | 60.239 | 42.308 | 8.28 | 0.00 | 34.77 | 4.17 |
113 | 114 | 2.137810 | ATATTGTTCCCGGTTGGTGG | 57.862 | 50.000 | 0.00 | 0.00 | 34.77 | 4.61 |
114 | 115 | 0.609681 | TATTGTTCCCGGTTGGTGGC | 60.610 | 55.000 | 0.00 | 0.00 | 34.77 | 5.01 |
115 | 116 | 2.648613 | ATTGTTCCCGGTTGGTGGCA | 62.649 | 55.000 | 0.00 | 0.00 | 34.77 | 4.92 |
116 | 117 | 3.292159 | GTTCCCGGTTGGTGGCAC | 61.292 | 66.667 | 9.70 | 9.70 | 34.77 | 5.01 |
117 | 118 | 4.589675 | TTCCCGGTTGGTGGCACC | 62.590 | 66.667 | 29.75 | 29.75 | 39.22 | 5.01 |
130 | 131 | 3.587933 | GCACCAACCGCGACCAAA | 61.588 | 61.111 | 8.23 | 0.00 | 0.00 | 3.28 |
131 | 132 | 2.637025 | CACCAACCGCGACCAAAG | 59.363 | 61.111 | 8.23 | 0.00 | 0.00 | 2.77 |
132 | 133 | 2.593436 | ACCAACCGCGACCAAAGG | 60.593 | 61.111 | 8.23 | 2.81 | 0.00 | 3.11 |
133 | 134 | 4.038080 | CCAACCGCGACCAAAGGC | 62.038 | 66.667 | 8.23 | 0.00 | 0.00 | 4.35 |
134 | 135 | 2.978010 | CAACCGCGACCAAAGGCT | 60.978 | 61.111 | 8.23 | 0.00 | 0.00 | 4.58 |
135 | 136 | 2.203294 | AACCGCGACCAAAGGCTT | 60.203 | 55.556 | 8.23 | 0.00 | 0.00 | 4.35 |
136 | 137 | 2.551912 | AACCGCGACCAAAGGCTTG | 61.552 | 57.895 | 8.23 | 0.00 | 0.00 | 4.01 |
137 | 138 | 2.978010 | CCGCGACCAAAGGCTTGT | 60.978 | 61.111 | 8.23 | 0.00 | 0.00 | 3.16 |
138 | 139 | 2.252260 | CGCGACCAAAGGCTTGTG | 59.748 | 61.111 | 0.00 | 1.43 | 0.00 | 3.33 |
139 | 140 | 2.050077 | GCGACCAAAGGCTTGTGC | 60.050 | 61.111 | 0.00 | 0.00 | 38.76 | 4.57 |
168 | 169 | 3.361977 | GCGGTGCGGTTGGATGTT | 61.362 | 61.111 | 0.00 | 0.00 | 0.00 | 2.71 |
169 | 170 | 2.914908 | GCGGTGCGGTTGGATGTTT | 61.915 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
170 | 171 | 1.579084 | GCGGTGCGGTTGGATGTTTA | 61.579 | 55.000 | 0.00 | 0.00 | 0.00 | 2.01 |
171 | 172 | 0.446222 | CGGTGCGGTTGGATGTTTAG | 59.554 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
172 | 173 | 1.530323 | GGTGCGGTTGGATGTTTAGT | 58.470 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
173 | 174 | 1.467342 | GGTGCGGTTGGATGTTTAGTC | 59.533 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
174 | 175 | 1.467342 | GTGCGGTTGGATGTTTAGTCC | 59.533 | 52.381 | 0.00 | 0.00 | 36.26 | 3.85 |
175 | 176 | 1.092348 | GCGGTTGGATGTTTAGTCCC | 58.908 | 55.000 | 0.00 | 0.00 | 34.76 | 4.46 |
176 | 177 | 1.612199 | GCGGTTGGATGTTTAGTCCCA | 60.612 | 52.381 | 0.00 | 0.00 | 34.76 | 4.37 |
177 | 178 | 2.081462 | CGGTTGGATGTTTAGTCCCAC | 58.919 | 52.381 | 0.00 | 0.00 | 34.76 | 4.61 |
178 | 179 | 2.443416 | GGTTGGATGTTTAGTCCCACC | 58.557 | 52.381 | 0.35 | 0.35 | 42.31 | 4.61 |
179 | 180 | 2.041216 | GGTTGGATGTTTAGTCCCACCT | 59.959 | 50.000 | 7.87 | 0.00 | 44.30 | 4.00 |
180 | 181 | 3.344515 | GTTGGATGTTTAGTCCCACCTC | 58.655 | 50.000 | 0.00 | 0.00 | 34.76 | 3.85 |
181 | 182 | 1.553248 | TGGATGTTTAGTCCCACCTCG | 59.447 | 52.381 | 0.00 | 0.00 | 34.76 | 4.63 |
182 | 183 | 1.653151 | GATGTTTAGTCCCACCTCGC | 58.347 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
183 | 184 | 1.207329 | GATGTTTAGTCCCACCTCGCT | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 4.93 |
184 | 185 | 1.927487 | TGTTTAGTCCCACCTCGCTA | 58.073 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
185 | 186 | 1.822990 | TGTTTAGTCCCACCTCGCTAG | 59.177 | 52.381 | 0.00 | 0.00 | 0.00 | 3.42 |
186 | 187 | 0.822164 | TTTAGTCCCACCTCGCTAGC | 59.178 | 55.000 | 4.06 | 4.06 | 0.00 | 3.42 |
187 | 188 | 0.033405 | TTAGTCCCACCTCGCTAGCT | 60.033 | 55.000 | 13.93 | 0.00 | 0.00 | 3.32 |
188 | 189 | 0.752009 | TAGTCCCACCTCGCTAGCTG | 60.752 | 60.000 | 13.93 | 6.69 | 0.00 | 4.24 |
189 | 190 | 2.052690 | GTCCCACCTCGCTAGCTGA | 61.053 | 63.158 | 13.93 | 10.81 | 0.00 | 4.26 |
190 | 191 | 1.754621 | TCCCACCTCGCTAGCTGAG | 60.755 | 63.158 | 21.98 | 21.98 | 0.00 | 3.35 |
191 | 192 | 1.754621 | CCCACCTCGCTAGCTGAGA | 60.755 | 63.158 | 27.24 | 12.76 | 35.43 | 3.27 |
192 | 193 | 1.732917 | CCACCTCGCTAGCTGAGAG | 59.267 | 63.158 | 27.24 | 19.63 | 41.40 | 3.20 |
195 | 196 | 2.727544 | CTCGCTAGCTGAGAGGCC | 59.272 | 66.667 | 23.57 | 0.00 | 38.66 | 5.19 |
196 | 197 | 1.827789 | CTCGCTAGCTGAGAGGCCT | 60.828 | 63.158 | 23.57 | 3.86 | 38.66 | 5.19 |
197 | 198 | 1.795170 | CTCGCTAGCTGAGAGGCCTC | 61.795 | 65.000 | 26.22 | 26.22 | 38.66 | 4.70 |
198 | 199 | 2.124060 | CGCTAGCTGAGAGGCCTCA | 61.124 | 63.158 | 33.90 | 15.08 | 46.48 | 3.86 |
205 | 206 | 2.676232 | TGAGAGGCCTCAAGAGTGG | 58.324 | 57.895 | 33.90 | 0.00 | 45.74 | 4.00 |
206 | 207 | 0.178921 | TGAGAGGCCTCAAGAGTGGT | 60.179 | 55.000 | 33.90 | 11.28 | 45.74 | 4.16 |
207 | 208 | 0.980423 | GAGAGGCCTCAAGAGTGGTT | 59.020 | 55.000 | 33.90 | 10.48 | 39.24 | 3.67 |
208 | 209 | 1.349357 | GAGAGGCCTCAAGAGTGGTTT | 59.651 | 52.381 | 33.90 | 9.66 | 39.24 | 3.27 |
209 | 210 | 2.567615 | GAGAGGCCTCAAGAGTGGTTTA | 59.432 | 50.000 | 33.90 | 0.00 | 39.24 | 2.01 |
210 | 211 | 3.185455 | AGAGGCCTCAAGAGTGGTTTAT | 58.815 | 45.455 | 33.90 | 5.98 | 0.00 | 1.40 |
211 | 212 | 4.362677 | AGAGGCCTCAAGAGTGGTTTATA | 58.637 | 43.478 | 33.90 | 0.00 | 0.00 | 0.98 |
212 | 213 | 4.971924 | AGAGGCCTCAAGAGTGGTTTATAT | 59.028 | 41.667 | 33.90 | 4.78 | 0.00 | 0.86 |
213 | 214 | 6.143915 | AGAGGCCTCAAGAGTGGTTTATATA | 58.856 | 40.000 | 33.90 | 0.00 | 0.00 | 0.86 |
214 | 215 | 6.789959 | AGAGGCCTCAAGAGTGGTTTATATAT | 59.210 | 38.462 | 33.90 | 3.98 | 0.00 | 0.86 |
215 | 216 | 7.293535 | AGAGGCCTCAAGAGTGGTTTATATATT | 59.706 | 37.037 | 33.90 | 3.63 | 0.00 | 1.28 |
216 | 217 | 7.816411 | AGGCCTCAAGAGTGGTTTATATATTT | 58.184 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
217 | 218 | 7.939588 | AGGCCTCAAGAGTGGTTTATATATTTC | 59.060 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
218 | 219 | 7.175119 | GGCCTCAAGAGTGGTTTATATATTTCC | 59.825 | 40.741 | 0.00 | 0.00 | 0.00 | 3.13 |
219 | 220 | 7.939588 | GCCTCAAGAGTGGTTTATATATTTCCT | 59.060 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
220 | 221 | 9.495572 | CCTCAAGAGTGGTTTATATATTTCCTC | 57.504 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
243 | 244 | 8.863049 | CCTCAACTTTTAACATATTTGTCATGC | 58.137 | 33.333 | 0.00 | 0.00 | 34.06 | 4.06 |
244 | 245 | 8.755696 | TCAACTTTTAACATATTTGTCATGCC | 57.244 | 30.769 | 0.00 | 0.00 | 34.06 | 4.40 |
245 | 246 | 8.584157 | TCAACTTTTAACATATTTGTCATGCCT | 58.416 | 29.630 | 0.00 | 0.00 | 34.06 | 4.75 |
246 | 247 | 8.863049 | CAACTTTTAACATATTTGTCATGCCTC | 58.137 | 33.333 | 0.00 | 0.00 | 34.06 | 4.70 |
256 | 257 | 2.989909 | TGTCATGCCTCGTCATCAAAT | 58.010 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
285 | 286 | 6.656632 | ATCAATCGAATAAGTGCCTCTCTA | 57.343 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
294 | 295 | 6.934048 | ATAAGTGCCTCTCTAATTCAAAGC | 57.066 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
345 | 347 | 9.905713 | AGAATTCTTAGGATTTGTGCTACATTA | 57.094 | 29.630 | 0.88 | 0.00 | 0.00 | 1.90 |
349 | 351 | 9.905713 | TTCTTAGGATTTGTGCTACATTAATCT | 57.094 | 29.630 | 10.66 | 0.00 | 0.00 | 2.40 |
428 | 432 | 4.090729 | CCGAATTGTCATGACATCAAACG | 58.909 | 43.478 | 28.32 | 24.41 | 41.52 | 3.60 |
621 | 1837 | 1.666872 | GGAACACCAACGACCTCGG | 60.667 | 63.158 | 0.00 | 0.00 | 44.95 | 4.63 |
632 | 1851 | 0.032267 | CGACCTCGGGCCTTTATCTC | 59.968 | 60.000 | 0.84 | 0.00 | 35.37 | 2.75 |
639 | 1858 | 4.402474 | CCTCGGGCCTTTATCTCAAAAATT | 59.598 | 41.667 | 0.84 | 0.00 | 0.00 | 1.82 |
650 | 1869 | 8.801882 | TTTATCTCAAAAATTATCCACCTCGT | 57.198 | 30.769 | 0.00 | 0.00 | 0.00 | 4.18 |
654 | 1873 | 7.162761 | TCTCAAAAATTATCCACCTCGTGTTA | 58.837 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
784 | 2014 | 4.634443 | CAGTCTATTTAAACCAAGGTCGGG | 59.366 | 45.833 | 0.00 | 0.00 | 0.00 | 5.14 |
791 | 2021 | 1.565067 | AACCAAGGTCGGGTAGTAGG | 58.435 | 55.000 | 0.00 | 0.00 | 37.77 | 3.18 |
793 | 2023 | 1.109609 | CCAAGGTCGGGTAGTAGGTC | 58.890 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
803 | 2033 | 3.563223 | GGGTAGTAGGTCAGCAGATACA | 58.437 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
862 | 2095 | 8.784994 | TGACGCCAAATTAAGTAAAGAAATACA | 58.215 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
863 | 2096 | 9.274065 | GACGCCAAATTAAGTAAAGAAATACAG | 57.726 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
885 | 2119 | 4.036971 | AGCTACTACTATCAACTTCAGCCG | 59.963 | 45.833 | 0.00 | 0.00 | 0.00 | 5.52 |
889 | 2123 | 1.623811 | ACTATCAACTTCAGCCGTGGT | 59.376 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
891 | 2125 | 2.386661 | ATCAACTTCAGCCGTGGTAG | 57.613 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
963 | 2197 | 0.896923 | AGGTCAAGCTGAGCAGAGAG | 59.103 | 55.000 | 7.39 | 0.00 | 46.52 | 3.20 |
2890 | 4207 | 7.431084 | GGTTATATTCTTGTAAATTGTGGTGCG | 59.569 | 37.037 | 0.00 | 0.00 | 0.00 | 5.34 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 2.388610 | ACCAACCGGGACCAAAGGT | 61.389 | 57.895 | 6.32 | 0.00 | 41.15 | 3.50 |
4 | 5 | 1.901464 | CACCAACCGGGACCAAAGG | 60.901 | 63.158 | 6.32 | 0.00 | 41.15 | 3.11 |
5 | 6 | 1.901464 | CCACCAACCGGGACCAAAG | 60.901 | 63.158 | 6.32 | 0.00 | 41.15 | 2.77 |
6 | 7 | 2.196229 | CCACCAACCGGGACCAAA | 59.804 | 61.111 | 6.32 | 0.00 | 41.15 | 3.28 |
7 | 8 | 4.589675 | GCCACCAACCGGGACCAA | 62.590 | 66.667 | 6.32 | 0.00 | 41.15 | 3.67 |
9 | 10 | 4.360405 | ATGCCACCAACCGGGACC | 62.360 | 66.667 | 6.32 | 0.00 | 41.15 | 4.46 |
10 | 11 | 3.061848 | CATGCCACCAACCGGGAC | 61.062 | 66.667 | 6.32 | 0.00 | 41.15 | 4.46 |
11 | 12 | 4.358841 | CCATGCCACCAACCGGGA | 62.359 | 66.667 | 6.32 | 0.00 | 41.15 | 5.14 |
12 | 13 | 4.358841 | TCCATGCCACCAACCGGG | 62.359 | 66.667 | 6.32 | 0.00 | 44.81 | 5.73 |
13 | 14 | 3.061848 | GTCCATGCCACCAACCGG | 61.062 | 66.667 | 0.00 | 0.00 | 38.77 | 5.28 |
14 | 15 | 2.034066 | AGTCCATGCCACCAACCG | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 4.44 |
15 | 16 | 1.978617 | CCAGTCCATGCCACCAACC | 60.979 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
16 | 17 | 1.978617 | CCCAGTCCATGCCACCAAC | 60.979 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
17 | 18 | 2.159490 | TCCCAGTCCATGCCACCAA | 61.159 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
18 | 19 | 2.531428 | TCCCAGTCCATGCCACCA | 60.531 | 61.111 | 0.00 | 0.00 | 0.00 | 4.17 |
19 | 20 | 1.271840 | TAGTCCCAGTCCATGCCACC | 61.272 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
20 | 21 | 0.618458 | TTAGTCCCAGTCCATGCCAC | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
21 | 22 | 1.281867 | CTTTAGTCCCAGTCCATGCCA | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 4.92 |
22 | 23 | 1.408822 | CCTTTAGTCCCAGTCCATGCC | 60.409 | 57.143 | 0.00 | 0.00 | 0.00 | 4.40 |
23 | 24 | 1.408822 | CCCTTTAGTCCCAGTCCATGC | 60.409 | 57.143 | 0.00 | 0.00 | 0.00 | 4.06 |
24 | 25 | 1.212935 | CCCCTTTAGTCCCAGTCCATG | 59.787 | 57.143 | 0.00 | 0.00 | 0.00 | 3.66 |
25 | 26 | 1.596496 | CCCCTTTAGTCCCAGTCCAT | 58.404 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
26 | 27 | 0.549169 | CCCCCTTTAGTCCCAGTCCA | 60.549 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
27 | 28 | 2.308185 | CCCCCTTTAGTCCCAGTCC | 58.692 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
42 | 43 | 1.699730 | CGGGACCAATTAATTCCCCC | 58.300 | 55.000 | 15.32 | 14.97 | 45.74 | 5.40 |
43 | 44 | 1.063492 | ACCGGGACCAATTAATTCCCC | 60.063 | 52.381 | 15.32 | 15.24 | 45.74 | 4.81 |
44 | 45 | 2.429250 | CAACCGGGACCAATTAATTCCC | 59.571 | 50.000 | 6.32 | 12.18 | 45.12 | 3.97 |
45 | 46 | 2.429250 | CCAACCGGGACCAATTAATTCC | 59.571 | 50.000 | 6.32 | 0.00 | 40.01 | 3.01 |
46 | 47 | 3.093814 | ACCAACCGGGACCAATTAATTC | 58.906 | 45.455 | 6.32 | 0.00 | 41.15 | 2.17 |
47 | 48 | 2.829120 | CACCAACCGGGACCAATTAATT | 59.171 | 45.455 | 6.32 | 0.00 | 41.15 | 1.40 |
48 | 49 | 2.452505 | CACCAACCGGGACCAATTAAT | 58.547 | 47.619 | 6.32 | 0.00 | 41.15 | 1.40 |
49 | 50 | 1.912417 | CACCAACCGGGACCAATTAA | 58.088 | 50.000 | 6.32 | 0.00 | 41.15 | 1.40 |
50 | 51 | 0.609681 | GCACCAACCGGGACCAATTA | 60.610 | 55.000 | 6.32 | 0.00 | 41.15 | 1.40 |
51 | 52 | 1.906333 | GCACCAACCGGGACCAATT | 60.906 | 57.895 | 6.32 | 0.00 | 41.15 | 2.32 |
52 | 53 | 2.282887 | GCACCAACCGGGACCAAT | 60.283 | 61.111 | 6.32 | 0.00 | 41.15 | 3.16 |
53 | 54 | 4.589675 | GGCACCAACCGGGACCAA | 62.590 | 66.667 | 6.32 | 0.00 | 41.15 | 3.67 |
65 | 66 | 2.597510 | GTCCTGGTTGGTGGCACC | 60.598 | 66.667 | 29.75 | 29.75 | 39.22 | 5.01 |
66 | 67 | 2.951475 | TTCGTCCTGGTTGGTGGCAC | 62.951 | 60.000 | 9.70 | 9.70 | 37.07 | 5.01 |
67 | 68 | 2.272230 | TTTCGTCCTGGTTGGTGGCA | 62.272 | 55.000 | 0.00 | 0.00 | 37.07 | 4.92 |
68 | 69 | 1.515521 | CTTTCGTCCTGGTTGGTGGC | 61.516 | 60.000 | 0.00 | 0.00 | 37.07 | 5.01 |
69 | 70 | 0.889186 | CCTTTCGTCCTGGTTGGTGG | 60.889 | 60.000 | 0.00 | 0.00 | 37.07 | 4.61 |
70 | 71 | 0.179029 | ACCTTTCGTCCTGGTTGGTG | 60.179 | 55.000 | 0.00 | 0.00 | 37.07 | 4.17 |
71 | 72 | 0.549469 | AACCTTTCGTCCTGGTTGGT | 59.451 | 50.000 | 0.00 | 0.00 | 41.87 | 3.67 |
72 | 73 | 2.554370 | TAACCTTTCGTCCTGGTTGG | 57.446 | 50.000 | 6.86 | 0.00 | 43.12 | 3.77 |
73 | 74 | 8.342634 | CAATATATTAACCTTTCGTCCTGGTTG | 58.657 | 37.037 | 6.86 | 0.00 | 43.12 | 3.77 |
74 | 75 | 8.050930 | ACAATATATTAACCTTTCGTCCTGGTT | 58.949 | 33.333 | 0.00 | 0.00 | 44.98 | 3.67 |
75 | 76 | 7.571025 | ACAATATATTAACCTTTCGTCCTGGT | 58.429 | 34.615 | 0.00 | 0.00 | 35.29 | 4.00 |
76 | 77 | 8.446599 | AACAATATATTAACCTTTCGTCCTGG | 57.553 | 34.615 | 0.00 | 0.00 | 0.00 | 4.45 |
77 | 78 | 8.557029 | GGAACAATATATTAACCTTTCGTCCTG | 58.443 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
78 | 79 | 7.718314 | GGGAACAATATATTAACCTTTCGTCCT | 59.282 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
79 | 80 | 7.307573 | CGGGAACAATATATTAACCTTTCGTCC | 60.308 | 40.741 | 0.00 | 0.00 | 0.00 | 4.79 |
80 | 81 | 7.307573 | CCGGGAACAATATATTAACCTTTCGTC | 60.308 | 40.741 | 0.00 | 0.00 | 0.00 | 4.20 |
81 | 82 | 6.484308 | CCGGGAACAATATATTAACCTTTCGT | 59.516 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
82 | 83 | 6.484308 | ACCGGGAACAATATATTAACCTTTCG | 59.516 | 38.462 | 6.32 | 2.53 | 0.00 | 3.46 |
83 | 84 | 7.812690 | ACCGGGAACAATATATTAACCTTTC | 57.187 | 36.000 | 6.32 | 0.00 | 0.00 | 2.62 |
84 | 85 | 7.068962 | CCAACCGGGAACAATATATTAACCTTT | 59.931 | 37.037 | 6.32 | 0.00 | 40.01 | 3.11 |
85 | 86 | 6.548251 | CCAACCGGGAACAATATATTAACCTT | 59.452 | 38.462 | 6.32 | 0.00 | 40.01 | 3.50 |
86 | 87 | 6.066032 | CCAACCGGGAACAATATATTAACCT | 58.934 | 40.000 | 6.32 | 0.00 | 40.01 | 3.50 |
87 | 88 | 5.829391 | ACCAACCGGGAACAATATATTAACC | 59.171 | 40.000 | 6.32 | 2.48 | 41.15 | 2.85 |
88 | 89 | 6.238814 | CCACCAACCGGGAACAATATATTAAC | 60.239 | 42.308 | 6.32 | 0.00 | 41.15 | 2.01 |
89 | 90 | 5.828859 | CCACCAACCGGGAACAATATATTAA | 59.171 | 40.000 | 6.32 | 0.00 | 41.15 | 1.40 |
90 | 91 | 5.378332 | CCACCAACCGGGAACAATATATTA | 58.622 | 41.667 | 6.32 | 0.00 | 41.15 | 0.98 |
91 | 92 | 4.211920 | CCACCAACCGGGAACAATATATT | 58.788 | 43.478 | 6.32 | 0.00 | 41.15 | 1.28 |
92 | 93 | 3.827722 | CCACCAACCGGGAACAATATAT | 58.172 | 45.455 | 6.32 | 0.00 | 41.15 | 0.86 |
93 | 94 | 2.684334 | GCCACCAACCGGGAACAATATA | 60.684 | 50.000 | 6.32 | 0.00 | 41.15 | 0.86 |
94 | 95 | 1.958069 | GCCACCAACCGGGAACAATAT | 60.958 | 52.381 | 6.32 | 0.00 | 41.15 | 1.28 |
95 | 96 | 0.609681 | GCCACCAACCGGGAACAATA | 60.610 | 55.000 | 6.32 | 0.00 | 41.15 | 1.90 |
96 | 97 | 1.906333 | GCCACCAACCGGGAACAAT | 60.906 | 57.895 | 6.32 | 0.00 | 41.15 | 2.71 |
97 | 98 | 2.519780 | GCCACCAACCGGGAACAA | 60.520 | 61.111 | 6.32 | 0.00 | 41.15 | 2.83 |
98 | 99 | 3.810188 | TGCCACCAACCGGGAACA | 61.810 | 61.111 | 6.32 | 0.00 | 41.15 | 3.18 |
99 | 100 | 3.292159 | GTGCCACCAACCGGGAAC | 61.292 | 66.667 | 6.32 | 0.00 | 41.15 | 3.62 |
100 | 101 | 4.589675 | GGTGCCACCAACCGGGAA | 62.590 | 66.667 | 9.55 | 0.00 | 38.42 | 3.97 |
113 | 114 | 3.536498 | CTTTGGTCGCGGTTGGTGC | 62.536 | 63.158 | 6.13 | 0.00 | 0.00 | 5.01 |
114 | 115 | 2.637025 | CTTTGGTCGCGGTTGGTG | 59.363 | 61.111 | 6.13 | 0.00 | 0.00 | 4.17 |
115 | 116 | 2.593436 | CCTTTGGTCGCGGTTGGT | 60.593 | 61.111 | 6.13 | 0.00 | 0.00 | 3.67 |
116 | 117 | 4.038080 | GCCTTTGGTCGCGGTTGG | 62.038 | 66.667 | 6.13 | 1.60 | 0.00 | 3.77 |
117 | 118 | 2.551912 | AAGCCTTTGGTCGCGGTTG | 61.552 | 57.895 | 6.13 | 0.00 | 0.00 | 3.77 |
118 | 119 | 2.203294 | AAGCCTTTGGTCGCGGTT | 60.203 | 55.556 | 6.13 | 0.00 | 0.00 | 4.44 |
119 | 120 | 2.978010 | CAAGCCTTTGGTCGCGGT | 60.978 | 61.111 | 6.13 | 0.00 | 0.00 | 5.68 |
120 | 121 | 2.978010 | ACAAGCCTTTGGTCGCGG | 60.978 | 61.111 | 6.13 | 0.00 | 38.66 | 6.46 |
121 | 122 | 2.252260 | CACAAGCCTTTGGTCGCG | 59.748 | 61.111 | 0.00 | 0.00 | 38.66 | 5.87 |
122 | 123 | 2.050077 | GCACAAGCCTTTGGTCGC | 60.050 | 61.111 | 0.00 | 0.00 | 38.66 | 5.19 |
151 | 152 | 1.579084 | TAAACATCCAACCGCACCGC | 61.579 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
152 | 153 | 0.446222 | CTAAACATCCAACCGCACCG | 59.554 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
153 | 154 | 1.467342 | GACTAAACATCCAACCGCACC | 59.533 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
154 | 155 | 1.467342 | GGACTAAACATCCAACCGCAC | 59.533 | 52.381 | 0.00 | 0.00 | 36.15 | 5.34 |
155 | 156 | 1.612199 | GGGACTAAACATCCAACCGCA | 60.612 | 52.381 | 0.00 | 0.00 | 38.06 | 5.69 |
156 | 157 | 1.092348 | GGGACTAAACATCCAACCGC | 58.908 | 55.000 | 0.00 | 0.00 | 38.06 | 5.68 |
157 | 158 | 2.081462 | GTGGGACTAAACATCCAACCG | 58.919 | 52.381 | 0.00 | 0.00 | 34.44 | 4.44 |
159 | 160 | 3.344515 | GAGGTGGGACTAAACATCCAAC | 58.655 | 50.000 | 0.00 | 0.00 | 39.22 | 3.77 |
160 | 161 | 2.027561 | CGAGGTGGGACTAAACATCCAA | 60.028 | 50.000 | 0.00 | 0.00 | 38.06 | 3.53 |
161 | 162 | 1.553248 | CGAGGTGGGACTAAACATCCA | 59.447 | 52.381 | 0.00 | 0.00 | 38.06 | 3.41 |
162 | 163 | 1.742750 | GCGAGGTGGGACTAAACATCC | 60.743 | 57.143 | 0.00 | 0.00 | 35.28 | 3.51 |
163 | 164 | 1.207329 | AGCGAGGTGGGACTAAACATC | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
164 | 165 | 1.276622 | AGCGAGGTGGGACTAAACAT | 58.723 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
165 | 166 | 1.822990 | CTAGCGAGGTGGGACTAAACA | 59.177 | 52.381 | 0.00 | 0.00 | 0.00 | 2.83 |
166 | 167 | 1.471153 | GCTAGCGAGGTGGGACTAAAC | 60.471 | 57.143 | 0.00 | 0.00 | 0.00 | 2.01 |
167 | 168 | 0.822164 | GCTAGCGAGGTGGGACTAAA | 59.178 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
168 | 169 | 0.033405 | AGCTAGCGAGGTGGGACTAA | 60.033 | 55.000 | 9.55 | 0.00 | 30.28 | 2.24 |
169 | 170 | 0.752009 | CAGCTAGCGAGGTGGGACTA | 60.752 | 60.000 | 17.16 | 0.00 | 45.66 | 2.59 |
170 | 171 | 2.055042 | CAGCTAGCGAGGTGGGACT | 61.055 | 63.158 | 17.16 | 0.00 | 45.66 | 3.85 |
171 | 172 | 2.496817 | CAGCTAGCGAGGTGGGAC | 59.503 | 66.667 | 17.16 | 0.00 | 45.66 | 4.46 |
176 | 177 | 2.124693 | GCCTCTCAGCTAGCGAGGT | 61.125 | 63.158 | 27.68 | 3.94 | 44.83 | 3.85 |
177 | 178 | 2.727544 | GCCTCTCAGCTAGCGAGG | 59.272 | 66.667 | 24.95 | 24.95 | 45.59 | 4.63 |
178 | 179 | 1.795170 | GAGGCCTCTCAGCTAGCGAG | 61.795 | 65.000 | 26.25 | 22.56 | 39.74 | 5.03 |
179 | 180 | 1.826054 | GAGGCCTCTCAGCTAGCGA | 60.826 | 63.158 | 26.25 | 8.97 | 39.74 | 4.93 |
180 | 181 | 2.124060 | TGAGGCCTCTCAGCTAGCG | 61.124 | 63.158 | 32.28 | 4.60 | 44.39 | 4.26 |
181 | 182 | 3.947173 | TGAGGCCTCTCAGCTAGC | 58.053 | 61.111 | 32.28 | 6.62 | 44.39 | 3.42 |
188 | 189 | 0.980423 | AACCACTCTTGAGGCCTCTC | 59.020 | 55.000 | 32.28 | 9.89 | 40.36 | 3.20 |
189 | 190 | 1.439543 | AAACCACTCTTGAGGCCTCT | 58.560 | 50.000 | 32.28 | 10.16 | 0.00 | 3.69 |
190 | 191 | 3.636153 | ATAAACCACTCTTGAGGCCTC | 57.364 | 47.619 | 26.78 | 26.78 | 0.00 | 4.70 |
191 | 192 | 7.394144 | AATATATAAACCACTCTTGAGGCCT | 57.606 | 36.000 | 3.86 | 3.86 | 0.00 | 5.19 |
192 | 193 | 7.175119 | GGAAATATATAAACCACTCTTGAGGCC | 59.825 | 40.741 | 0.00 | 0.00 | 0.00 | 5.19 |
193 | 194 | 7.939588 | AGGAAATATATAAACCACTCTTGAGGC | 59.060 | 37.037 | 2.55 | 0.00 | 0.00 | 4.70 |
194 | 195 | 9.495572 | GAGGAAATATATAAACCACTCTTGAGG | 57.504 | 37.037 | 2.55 | 0.00 | 0.00 | 3.86 |
217 | 218 | 8.863049 | GCATGACAAATATGTTAAAAGTTGAGG | 58.137 | 33.333 | 0.00 | 0.00 | 40.74 | 3.86 |
218 | 219 | 8.863049 | GGCATGACAAATATGTTAAAAGTTGAG | 58.137 | 33.333 | 0.00 | 0.00 | 40.74 | 3.02 |
219 | 220 | 8.584157 | AGGCATGACAAATATGTTAAAAGTTGA | 58.416 | 29.630 | 0.00 | 0.00 | 40.74 | 3.18 |
220 | 221 | 8.761575 | AGGCATGACAAATATGTTAAAAGTTG | 57.238 | 30.769 | 0.00 | 0.00 | 40.74 | 3.16 |
221 | 222 | 7.754924 | CGAGGCATGACAAATATGTTAAAAGTT | 59.245 | 33.333 | 0.00 | 0.00 | 40.74 | 2.66 |
222 | 223 | 7.094377 | ACGAGGCATGACAAATATGTTAAAAGT | 60.094 | 33.333 | 0.00 | 0.00 | 40.74 | 2.66 |
223 | 224 | 7.250569 | ACGAGGCATGACAAATATGTTAAAAG | 58.749 | 34.615 | 0.00 | 0.00 | 40.74 | 2.27 |
224 | 225 | 7.094592 | TGACGAGGCATGACAAATATGTTAAAA | 60.095 | 33.333 | 0.00 | 0.00 | 40.74 | 1.52 |
225 | 226 | 6.372937 | TGACGAGGCATGACAAATATGTTAAA | 59.627 | 34.615 | 0.00 | 0.00 | 40.74 | 1.52 |
226 | 227 | 5.877564 | TGACGAGGCATGACAAATATGTTAA | 59.122 | 36.000 | 0.00 | 0.00 | 40.74 | 2.01 |
227 | 228 | 5.423886 | TGACGAGGCATGACAAATATGTTA | 58.576 | 37.500 | 0.00 | 0.00 | 40.74 | 2.41 |
228 | 229 | 4.260985 | TGACGAGGCATGACAAATATGTT | 58.739 | 39.130 | 0.00 | 0.00 | 40.74 | 2.71 |
229 | 230 | 3.872696 | TGACGAGGCATGACAAATATGT | 58.127 | 40.909 | 0.00 | 0.00 | 44.25 | 2.29 |
230 | 231 | 4.512571 | TGATGACGAGGCATGACAAATATG | 59.487 | 41.667 | 0.00 | 0.00 | 0.00 | 1.78 |
231 | 232 | 4.707105 | TGATGACGAGGCATGACAAATAT | 58.293 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
232 | 233 | 4.135747 | TGATGACGAGGCATGACAAATA | 57.864 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
233 | 234 | 2.989909 | TGATGACGAGGCATGACAAAT | 58.010 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
234 | 235 | 2.470983 | TGATGACGAGGCATGACAAA | 57.529 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
235 | 236 | 2.470983 | TTGATGACGAGGCATGACAA | 57.529 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
236 | 237 | 2.470983 | TTTGATGACGAGGCATGACA | 57.529 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
237 | 238 | 4.025396 | CACTATTTGATGACGAGGCATGAC | 60.025 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
238 | 239 | 4.122046 | CACTATTTGATGACGAGGCATGA | 58.878 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
239 | 240 | 3.873361 | ACACTATTTGATGACGAGGCATG | 59.127 | 43.478 | 0.00 | 0.00 | 0.00 | 4.06 |
240 | 241 | 4.142609 | ACACTATTTGATGACGAGGCAT | 57.857 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
241 | 242 | 3.610040 | ACACTATTTGATGACGAGGCA | 57.390 | 42.857 | 0.00 | 0.00 | 0.00 | 4.75 |
242 | 243 | 5.289595 | TGATACACTATTTGATGACGAGGC | 58.710 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
243 | 244 | 7.148902 | CGATTGATACACTATTTGATGACGAGG | 60.149 | 40.741 | 0.00 | 0.00 | 0.00 | 4.63 |
244 | 245 | 7.591426 | TCGATTGATACACTATTTGATGACGAG | 59.409 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
245 | 246 | 7.422399 | TCGATTGATACACTATTTGATGACGA | 58.578 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
246 | 247 | 7.623268 | TCGATTGATACACTATTTGATGACG | 57.377 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
256 | 257 | 7.014326 | AGAGGCACTTATTCGATTGATACACTA | 59.986 | 37.037 | 0.00 | 0.00 | 41.55 | 2.74 |
345 | 347 | 9.702494 | GAGATTCAATCCAACAAAAAGAAGATT | 57.298 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
347 | 349 | 8.236585 | TGAGATTCAATCCAACAAAAAGAAGA | 57.763 | 30.769 | 0.00 | 0.00 | 0.00 | 2.87 |
385 | 389 | 5.770663 | TCGGAACACAAATAATTCCTTTGGA | 59.229 | 36.000 | 14.48 | 0.00 | 39.89 | 3.53 |
396 | 400 | 6.205658 | TGTCATGACAATTCGGAACACAAATA | 59.794 | 34.615 | 26.02 | 0.00 | 38.56 | 1.40 |
403 | 407 | 4.944962 | TGATGTCATGACAATTCGGAAC | 57.055 | 40.909 | 31.00 | 14.83 | 45.41 | 3.62 |
406 | 410 | 4.090729 | CGTTTGATGTCATGACAATTCGG | 58.909 | 43.478 | 31.00 | 15.37 | 45.41 | 4.30 |
461 | 466 | 5.416952 | AGGCCACTTTGATTCATAGAAACAG | 59.583 | 40.000 | 5.01 | 0.00 | 0.00 | 3.16 |
524 | 545 | 8.731605 | TGAATTTTCAACACGGCTAATTACATA | 58.268 | 29.630 | 0.00 | 0.00 | 33.55 | 2.29 |
525 | 546 | 7.598278 | TGAATTTTCAACACGGCTAATTACAT | 58.402 | 30.769 | 0.00 | 0.00 | 33.55 | 2.29 |
621 | 1837 | 7.069950 | AGGTGGATAATTTTTGAGATAAAGGCC | 59.930 | 37.037 | 0.00 | 0.00 | 0.00 | 5.19 |
632 | 1851 | 6.799925 | GTGTAACACGAGGTGGATAATTTTTG | 59.200 | 38.462 | 0.42 | 0.00 | 37.94 | 2.44 |
663 | 1882 | 8.774890 | TTACTTAAATATTACTTGGCGTCACA | 57.225 | 30.769 | 0.00 | 0.00 | 0.00 | 3.58 |
759 | 1989 | 5.121768 | CCGACCTTGGTTTAAATAGACTGTG | 59.878 | 44.000 | 0.00 | 0.00 | 0.00 | 3.66 |
834 | 2067 | 5.272167 | TCTTTACTTAATTTGGCGTCACG | 57.728 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
862 | 2095 | 4.036971 | CGGCTGAAGTTGATAGTAGTAGCT | 59.963 | 45.833 | 0.00 | 0.00 | 0.00 | 3.32 |
863 | 2096 | 4.202030 | ACGGCTGAAGTTGATAGTAGTAGC | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
885 | 2119 | 5.354767 | CGGGGTTTAAATAGACTCTACCAC | 58.645 | 45.833 | 0.00 | 0.00 | 0.00 | 4.16 |
889 | 2123 | 5.206587 | AGAGCGGGGTTTAAATAGACTCTA | 58.793 | 41.667 | 8.21 | 0.00 | 30.54 | 2.43 |
891 | 2125 | 4.370049 | GAGAGCGGGGTTTAAATAGACTC | 58.630 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
963 | 2197 | 2.352960 | GGATCGATCACTGGCTGTTTTC | 59.647 | 50.000 | 25.93 | 0.96 | 0.00 | 2.29 |
1290 | 2542 | 1.594310 | GTTGAGGCGGAAGAGCTCT | 59.406 | 57.895 | 11.45 | 11.45 | 37.29 | 4.09 |
1350 | 2602 | 2.357517 | GACGTCTGGCTGTGGTGG | 60.358 | 66.667 | 8.70 | 0.00 | 0.00 | 4.61 |
2890 | 4207 | 0.179084 | TGGCGCCTAGTCATAGCAAC | 60.179 | 55.000 | 29.70 | 0.00 | 0.00 | 4.17 |
3186 | 4504 | 1.145738 | AGTGCCCAAAATGTCTGAGGT | 59.854 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
3192 | 4510 | 2.893489 | AGGAAAGAGTGCCCAAAATGTC | 59.107 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.