Multiple sequence alignment - TraesCS7B01G455800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G455800 chr7B 100.000 2964 0 0 1 2964 716316882 716313919 0.000000e+00 5474
1 TraesCS7B01G455800 chr7B 85.178 1039 111 26 1471 2472 717000032 717001064 0.000000e+00 1026
2 TraesCS7B01G455800 chr7B 85.747 863 102 10 495 1351 716999154 717000001 0.000000e+00 893
3 TraesCS7B01G455800 chr7B 80.894 1052 149 34 1435 2452 716307706 716306673 0.000000e+00 782
4 TraesCS7B01G455800 chr7B 84.688 738 62 23 1744 2472 716465932 716465237 0.000000e+00 689
5 TraesCS7B01G455800 chr7B 88.225 552 64 1 786 1336 716467049 716466498 0.000000e+00 658
6 TraesCS7B01G455800 chr7B 81.389 763 102 28 613 1349 716370462 716369714 1.180000e-163 586
7 TraesCS7B01G455800 chr7B 87.751 498 59 2 884 1380 716308200 716307704 5.510000e-162 580
8 TraesCS7B01G455800 chr7B 78.102 822 138 29 1484 2282 716369508 716368706 1.600000e-132 483
9 TraesCS7B01G455800 chr7B 91.986 287 21 1 204 488 716479928 716479642 4.600000e-108 401
10 TraesCS7B01G455800 chr7B 90.559 286 25 1 204 487 716998831 716999116 7.750000e-101 377
11 TraesCS7B01G455800 chr7B 85.957 235 23 4 1471 1695 716466443 716466209 2.950000e-60 243
12 TraesCS7B01G455800 chr7B 92.517 147 11 0 2449 2595 717001071 717001217 8.320000e-51 211
13 TraesCS7B01G455800 chr7B 90.152 132 13 0 495 626 716479605 716479474 3.930000e-39 172
14 TraesCS7B01G455800 chr7B 89.000 100 6 3 629 728 716475445 716475351 5.190000e-23 119
15 TraesCS7B01G455800 chr7D 85.221 1042 104 31 1475 2472 620143563 620144598 0.000000e+00 1026
16 TraesCS7B01G455800 chr7D 84.767 860 86 19 1484 2329 620116805 620117633 0.000000e+00 821
17 TraesCS7B01G455800 chr7D 84.726 838 91 16 540 1355 620142703 620143525 0.000000e+00 804
18 TraesCS7B01G455800 chr7D 88.584 657 65 7 686 1336 620116077 620116729 0.000000e+00 789
19 TraesCS7B01G455800 chr7D 90.335 507 39 6 2449 2945 620145413 620145919 0.000000e+00 656
20 TraesCS7B01G455800 chr7D 90.097 515 35 12 1971 2472 620144895 620145406 0.000000e+00 654
21 TraesCS7B01G455800 chr7D 83.210 673 96 13 1745 2406 620198480 620199146 4.230000e-168 601
22 TraesCS7B01G455800 chr7D 86.406 537 69 4 846 1380 620197569 620198103 4.260000e-163 584
23 TraesCS7B01G455800 chr7D 86.914 512 40 14 204 694 620115160 620115665 1.550000e-152 549
24 TraesCS7B01G455800 chr7D 76.031 1043 181 42 1484 2499 620086367 620087367 7.430000e-131 477
25 TraesCS7B01G455800 chr7D 95.238 294 13 1 2449 2742 620144605 620144897 5.790000e-127 464
26 TraesCS7B01G455800 chr7D 87.206 383 42 5 1435 1815 620198101 620198478 2.110000e-116 429
27 TraesCS7B01G455800 chr7D 93.627 204 10 3 1 203 219638928 219638727 4.800000e-78 302
28 TraesCS7B01G455800 chr7A 88.592 824 83 5 520 1336 714823533 714822714 0.000000e+00 990
29 TraesCS7B01G455800 chr7A 82.590 919 100 28 1471 2370 714822661 714821784 0.000000e+00 756
30 TraesCS7B01G455800 chr7A 86.076 474 63 3 884 1356 714759669 714759198 9.480000e-140 507
31 TraesCS7B01G455800 chr7A 90.033 301 26 4 1438 1737 714759183 714758886 1.290000e-103 387
32 TraesCS7B01G455800 chr7A 91.960 199 14 1 245 441 714825131 714824933 8.090000e-71 278
33 TraesCS7B01G455800 chr7A 93.506 77 5 0 1 77 115841848 115841924 6.710000e-22 115
34 TraesCS7B01G455800 chrUn 88.151 768 71 5 668 1435 466806588 466807335 0.000000e+00 896
35 TraesCS7B01G455800 chrUn 91.795 195 16 0 1 195 89841850 89841656 3.760000e-69 272
36 TraesCS7B01G455800 chrUn 93.168 161 8 1 204 364 461239751 461239908 1.780000e-57 233
37 TraesCS7B01G455800 chrUn 87.975 158 16 2 502 657 461239965 461240121 1.810000e-42 183
38 TraesCS7B01G455800 chr6D 89.474 361 26 9 2121 2472 107534912 107535269 2.100000e-121 446
39 TraesCS7B01G455800 chr6D 87.863 379 38 5 2591 2964 354989030 354989405 3.510000e-119 438
40 TraesCS7B01G455800 chr6D 87.200 375 40 5 2597 2964 163328295 163327922 1.270000e-113 420
41 TraesCS7B01G455800 chr6D 91.089 202 17 1 2449 2649 107535277 107535478 3.760000e-69 272
42 TraesCS7B01G455800 chr4D 87.566 378 37 6 2596 2964 505966571 505966947 2.110000e-116 429
43 TraesCS7B01G455800 chr4D 87.234 376 39 8 2597 2964 500006824 500007198 1.270000e-113 420
44 TraesCS7B01G455800 chr4D 93.035 201 14 0 3 203 454803330 454803530 8.030000e-76 294
45 TraesCS7B01G455800 chr4D 88.670 203 15 1 1 203 12043263 12043069 1.060000e-59 241
46 TraesCS7B01G455800 chr3B 88.366 361 32 7 2597 2950 42739187 42738830 2.730000e-115 425
47 TraesCS7B01G455800 chr3B 93.103 203 13 1 1 203 762318897 762319098 2.230000e-76 296
48 TraesCS7B01G455800 chr4B 87.500 376 33 8 2598 2964 53162276 53162646 3.530000e-114 422
49 TraesCS7B01G455800 chr4B 90.206 194 18 1 2 195 27300081 27300273 4.900000e-63 252
50 TraesCS7B01G455800 chr1D 87.234 376 36 8 2597 2961 469388237 469388611 4.570000e-113 418
51 TraesCS7B01G455800 chr1D 87.640 89 9 2 391 477 249598535 249598623 5.230000e-18 102
52 TraesCS7B01G455800 chr3A 87.037 378 37 7 2595 2964 716130123 716129750 1.640000e-112 416
53 TraesCS7B01G455800 chr2A 87.003 377 38 9 2595 2964 703284398 703284026 5.910000e-112 414
54 TraesCS7B01G455800 chr3D 92.574 202 15 0 1 202 10295719 10295518 1.040000e-74 291
55 TraesCS7B01G455800 chr1B 91.371 197 17 0 7 203 333787129 333786933 1.350000e-68 270
56 TraesCS7B01G455800 chr5A 91.971 137 11 0 2 138 466940132 466939996 3.010000e-45 193
57 TraesCS7B01G455800 chr5B 85.185 162 23 1 1899 2059 469984173 469984012 6.570000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G455800 chr7B 716313919 716316882 2963 True 5474.000000 5474 100.000000 1 2964 1 chr7B.!!$R1 2963
1 TraesCS7B01G455800 chr7B 716306673 716308200 1527 True 681.000000 782 84.322500 884 2452 2 chr7B.!!$R3 1568
2 TraesCS7B01G455800 chr7B 716998831 717001217 2386 False 626.750000 1026 88.500250 204 2595 4 chr7B.!!$F1 2391
3 TraesCS7B01G455800 chr7B 716368706 716370462 1756 True 534.500000 586 79.745500 613 2282 2 chr7B.!!$R4 1669
4 TraesCS7B01G455800 chr7B 716465237 716467049 1812 True 530.000000 689 86.290000 786 2472 3 chr7B.!!$R5 1686
5 TraesCS7B01G455800 chr7D 620142703 620145919 3216 False 720.800000 1026 89.123400 540 2945 5 chr7D.!!$F3 2405
6 TraesCS7B01G455800 chr7D 620115160 620117633 2473 False 719.666667 821 86.755000 204 2329 3 chr7D.!!$F2 2125
7 TraesCS7B01G455800 chr7D 620197569 620199146 1577 False 538.000000 601 85.607333 846 2406 3 chr7D.!!$F4 1560
8 TraesCS7B01G455800 chr7D 620086367 620087367 1000 False 477.000000 477 76.031000 1484 2499 1 chr7D.!!$F1 1015
9 TraesCS7B01G455800 chr7A 714821784 714825131 3347 True 674.666667 990 87.714000 245 2370 3 chr7A.!!$R2 2125
10 TraesCS7B01G455800 chr7A 714758886 714759669 783 True 447.000000 507 88.054500 884 1737 2 chr7A.!!$R1 853
11 TraesCS7B01G455800 chrUn 466806588 466807335 747 False 896.000000 896 88.151000 668 1435 1 chrUn.!!$F1 767
12 TraesCS7B01G455800 chr6D 107534912 107535478 566 False 359.000000 446 90.281500 2121 2649 2 chr6D.!!$F2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.11714 TGCAGGGGAAGGAGAGAAGA 59.883 55.0 0.0 0.0 0.0 2.87 F
187 188 0.17691 GAAGGAGAGAAGAAGCCCCG 59.823 60.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 4255 0.539051 AGGGGTCTCGCTTTCATCTG 59.461 55.0 0.00 0.0 31.69 2.90 R
1965 4263 1.261238 CCTTCTGAAGGGGTCTCGCT 61.261 60.0 25.62 0.0 45.27 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.358615 TGCAGCACCGACACCATC 60.359 61.111 0.00 0.00 0.00 3.51
28 29 4.569023 CACCATCGCGCCGAGCTA 62.569 66.667 0.00 0.00 45.59 3.32
29 30 4.271816 ACCATCGCGCCGAGCTAG 62.272 66.667 0.00 0.00 45.59 3.42
30 31 3.966104 CCATCGCGCCGAGCTAGA 61.966 66.667 0.00 0.00 45.59 2.43
31 32 2.026157 CATCGCGCCGAGCTAGAA 59.974 61.111 0.00 0.00 45.59 2.10
32 33 2.026301 ATCGCGCCGAGCTAGAAC 59.974 61.111 0.00 0.00 45.59 3.01
33 34 2.771639 ATCGCGCCGAGCTAGAACA 61.772 57.895 0.00 0.00 45.59 3.18
34 35 2.938539 ATCGCGCCGAGCTAGAACAC 62.939 60.000 0.00 0.00 45.59 3.32
35 36 2.886124 GCGCCGAGCTAGAACACC 60.886 66.667 0.00 0.00 44.04 4.16
36 37 2.579787 CGCCGAGCTAGAACACCG 60.580 66.667 0.00 0.00 0.00 4.94
37 38 2.572284 GCCGAGCTAGAACACCGT 59.428 61.111 0.00 0.00 0.00 4.83
38 39 1.516603 GCCGAGCTAGAACACCGTC 60.517 63.158 0.00 0.00 0.00 4.79
39 40 1.226323 CCGAGCTAGAACACCGTCG 60.226 63.158 0.00 0.00 0.00 5.12
40 41 1.868251 CGAGCTAGAACACCGTCGC 60.868 63.158 0.00 0.00 0.00 5.19
41 42 1.507174 GAGCTAGAACACCGTCGCT 59.493 57.895 0.00 0.00 0.00 4.93
42 43 0.798771 GAGCTAGAACACCGTCGCTG 60.799 60.000 0.00 0.00 0.00 5.18
43 44 1.805945 GCTAGAACACCGTCGCTGG 60.806 63.158 0.00 0.00 0.00 4.85
44 45 1.153823 CTAGAACACCGTCGCTGGG 60.154 63.158 0.00 0.00 0.00 4.45
45 46 3.291101 TAGAACACCGTCGCTGGGC 62.291 63.158 0.00 0.00 0.00 5.36
59 60 4.699522 GGGCCACACCACCGTCTC 62.700 72.222 4.39 0.00 42.05 3.36
60 61 4.699522 GGCCACACCACCGTCTCC 62.700 72.222 0.00 0.00 38.86 3.71
61 62 4.699522 GCCACACCACCGTCTCCC 62.700 72.222 0.00 0.00 0.00 4.30
62 63 4.373116 CCACACCACCGTCTCCCG 62.373 72.222 0.00 0.00 0.00 5.14
126 127 4.853142 CCGATCCCTCGTCCCCCA 62.853 72.222 0.00 0.00 43.49 4.96
127 128 3.537874 CGATCCCTCGTCCCCCAC 61.538 72.222 0.00 0.00 40.07 4.61
128 129 2.365105 GATCCCTCGTCCCCCACA 60.365 66.667 0.00 0.00 0.00 4.17
129 130 1.766461 GATCCCTCGTCCCCCACAT 60.766 63.158 0.00 0.00 0.00 3.21
130 131 2.044806 GATCCCTCGTCCCCCACATG 62.045 65.000 0.00 0.00 0.00 3.21
131 132 3.797353 CCCTCGTCCCCCACATGG 61.797 72.222 0.00 0.00 0.00 3.66
132 133 2.687200 CCTCGTCCCCCACATGGA 60.687 66.667 0.00 0.00 37.39 3.41
133 134 2.735772 CCTCGTCCCCCACATGGAG 61.736 68.421 0.00 0.00 37.39 3.86
134 135 3.391665 CTCGTCCCCCACATGGAGC 62.392 68.421 0.00 0.00 37.39 4.70
135 136 3.716195 CGTCCCCCACATGGAGCA 61.716 66.667 0.00 0.00 37.39 4.26
136 137 2.273449 GTCCCCCACATGGAGCAG 59.727 66.667 0.00 0.00 37.39 4.24
137 138 3.731728 TCCCCCACATGGAGCAGC 61.732 66.667 0.00 0.00 37.39 5.25
138 139 4.828296 CCCCCACATGGAGCAGCC 62.828 72.222 0.00 0.00 37.39 4.85
161 162 4.521062 GCGCTGCTGAGATCCCGT 62.521 66.667 0.00 0.00 0.00 5.28
162 163 2.584418 CGCTGCTGAGATCCCGTG 60.584 66.667 0.00 0.00 0.00 4.94
163 164 2.894387 GCTGCTGAGATCCCGTGC 60.894 66.667 0.00 0.00 0.00 5.34
164 165 2.580815 CTGCTGAGATCCCGTGCA 59.419 61.111 0.00 0.00 0.00 4.57
165 166 1.521010 CTGCTGAGATCCCGTGCAG 60.521 63.158 11.36 11.36 43.71 4.41
166 167 2.202987 GCTGAGATCCCGTGCAGG 60.203 66.667 0.00 0.00 40.63 4.85
175 176 3.003173 CCGTGCAGGGGAAGGAGA 61.003 66.667 17.92 0.00 35.97 3.71
176 177 2.581354 CGTGCAGGGGAAGGAGAG 59.419 66.667 0.00 0.00 0.00 3.20
177 178 1.984570 CGTGCAGGGGAAGGAGAGA 60.985 63.158 0.00 0.00 0.00 3.10
178 179 1.544825 CGTGCAGGGGAAGGAGAGAA 61.545 60.000 0.00 0.00 0.00 2.87
179 180 0.251634 GTGCAGGGGAAGGAGAGAAG 59.748 60.000 0.00 0.00 0.00 2.85
180 181 0.117140 TGCAGGGGAAGGAGAGAAGA 59.883 55.000 0.00 0.00 0.00 2.87
181 182 1.280457 GCAGGGGAAGGAGAGAAGAA 58.720 55.000 0.00 0.00 0.00 2.52
182 183 1.209261 GCAGGGGAAGGAGAGAAGAAG 59.791 57.143 0.00 0.00 0.00 2.85
183 184 1.209261 CAGGGGAAGGAGAGAAGAAGC 59.791 57.143 0.00 0.00 0.00 3.86
184 185 0.544223 GGGGAAGGAGAGAAGAAGCC 59.456 60.000 0.00 0.00 0.00 4.35
185 186 0.544223 GGGAAGGAGAGAAGAAGCCC 59.456 60.000 0.00 0.00 0.00 5.19
186 187 0.544223 GGAAGGAGAGAAGAAGCCCC 59.456 60.000 0.00 0.00 0.00 5.80
187 188 0.176910 GAAGGAGAGAAGAAGCCCCG 59.823 60.000 0.00 0.00 0.00 5.73
188 189 1.904990 AAGGAGAGAAGAAGCCCCGC 61.905 60.000 0.00 0.00 0.00 6.13
189 190 2.188207 GAGAGAAGAAGCCCCGCC 59.812 66.667 0.00 0.00 0.00 6.13
190 191 3.724914 GAGAGAAGAAGCCCCGCCG 62.725 68.421 0.00 0.00 0.00 6.46
228 229 2.542178 CTGCGCTTGTACTGTGTGTTTA 59.458 45.455 9.73 0.00 0.00 2.01
299 300 2.360165 GCCATGAGCATTTTAGTCCTGG 59.640 50.000 0.00 0.00 42.97 4.45
309 310 8.230472 AGCATTTTAGTCCTGGATTATTTCTG 57.770 34.615 0.00 0.00 0.00 3.02
375 376 9.575783 GAACAGAGACTAAATTTACTAGGACTG 57.424 37.037 0.00 0.00 0.00 3.51
413 416 1.382914 AAAGGGTATGGCCAGGTCTT 58.617 50.000 13.05 9.49 39.65 3.01
418 421 2.116238 GGTATGGCCAGGTCTTAGTCA 58.884 52.381 13.05 0.00 37.17 3.41
425 428 3.330267 GCCAGGTCTTAGTCAACTGAAG 58.670 50.000 0.00 0.00 0.00 3.02
441 1745 7.012044 GTCAACTGAAGCTTAACCAAGTCTAAA 59.988 37.037 0.00 0.00 34.00 1.85
471 1775 8.807667 ATGACATAACTTGCAAGAAAGAAAAG 57.192 30.769 32.50 14.68 0.00 2.27
477 1781 9.741647 ATAACTTGCAAGAAAGAAAAGAGAAAG 57.258 29.630 32.50 0.61 0.00 2.62
490 1794 8.768501 AGAAAAGAGAAAGAAAATTACCCTGT 57.231 30.769 0.00 0.00 0.00 4.00
492 1796 9.817809 GAAAAGAGAAAGAAAATTACCCTGTTT 57.182 29.630 0.00 0.00 0.00 2.83
523 1857 6.238648 ACTTGGTTAAGTCTTAATGGACTGG 58.761 40.000 8.27 0.10 43.53 4.00
531 1865 6.893020 AGTCTTAATGGACTGGGATTTAGT 57.107 37.500 0.00 0.00 43.89 2.24
566 1900 3.636300 TGAAACCCACATGTGAGAAAAGG 59.364 43.478 27.46 19.44 0.00 3.11
599 1943 5.423290 TGGATATAGATGAGAATGCATCCGT 59.577 40.000 0.00 0.00 44.47 4.69
602 1946 7.436673 GGATATAGATGAGAATGCATCCGTTAC 59.563 40.741 0.00 0.00 44.47 2.50
655 2001 1.303643 CAACCTGCCCCTCTTGGAC 60.304 63.158 0.00 0.00 35.39 4.02
694 2040 0.743688 AGCAGTAGCACCTCGATCAG 59.256 55.000 0.00 0.00 45.49 2.90
715 2484 4.078537 AGCACACAACACAAGGCAATATA 58.921 39.130 0.00 0.00 0.00 0.86
721 2490 5.001232 ACAACACAAGGCAATATACGTTCT 58.999 37.500 0.00 0.00 0.00 3.01
821 2603 0.449388 GCAAGAAATCGGTGAGCAGG 59.551 55.000 0.00 0.00 0.00 4.85
836 2634 6.397272 GGTGAGCAGGAATCTTCTATAGATG 58.603 44.000 2.58 6.28 42.90 2.90
841 2655 7.669427 AGCAGGAATCTTCTATAGATGAACTG 58.331 38.462 24.95 24.95 42.90 3.16
842 2656 7.289782 AGCAGGAATCTTCTATAGATGAACTGT 59.710 37.037 26.90 19.27 42.90 3.55
843 2657 7.930865 GCAGGAATCTTCTATAGATGAACTGTT 59.069 37.037 26.90 17.64 42.90 3.16
861 2675 8.855110 TGAACTGTTAATTAATTCTTCTGCCAA 58.145 29.630 3.39 0.00 0.00 4.52
881 2695 6.601613 TGCCAATGATTAATTCCTAACGAGTT 59.398 34.615 0.00 0.00 0.00 3.01
882 2696 7.122055 TGCCAATGATTAATTCCTAACGAGTTT 59.878 33.333 0.00 0.00 0.00 2.66
892 2714 5.320549 TCCTAACGAGTTTGTACATCTCC 57.679 43.478 17.25 5.89 0.00 3.71
894 2720 5.479375 TCCTAACGAGTTTGTACATCTCCTT 59.521 40.000 17.25 14.98 0.00 3.36
895 2721 6.660521 TCCTAACGAGTTTGTACATCTCCTTA 59.339 38.462 17.25 15.19 0.00 2.69
966 2792 0.830648 CGGAGAACTGGGGCAAGATA 59.169 55.000 0.00 0.00 0.00 1.98
970 2796 3.054361 GGAGAACTGGGGCAAGATAAAGA 60.054 47.826 0.00 0.00 0.00 2.52
975 2801 3.282885 CTGGGGCAAGATAAAGAAGGAC 58.717 50.000 0.00 0.00 0.00 3.85
1266 3092 2.357034 GTTCACCTCAGCGCCGAA 60.357 61.111 2.29 0.00 0.00 4.30
1380 3206 6.375174 CCAGCTGCTGCCAACAAATATATATA 59.625 38.462 23.86 0.00 40.80 0.86
1408 3234 6.183347 ACTCCCTCTGTCTCAAAATAAATGG 58.817 40.000 0.00 0.00 0.00 3.16
1454 3346 5.632034 AGTATCTTTCTTTAATCCGGCCT 57.368 39.130 0.00 0.00 0.00 5.19
1565 3481 3.493303 GTGGATCCCTGGGAGGCC 61.493 72.222 21.99 23.02 34.05 5.19
1659 3575 3.641906 CTGGACCGTTATCAAGAGGGTAT 59.358 47.826 0.00 0.00 35.56 2.73
1661 3577 3.006644 GGACCGTTATCAAGAGGGTATCC 59.993 52.174 0.00 0.00 35.56 2.59
1680 3604 6.799925 GGTATCCACGTTGTTAATGACTTTTG 59.200 38.462 0.00 0.00 0.00 2.44
1686 3610 4.915085 CGTTGTTAATGACTTTTGCCGATT 59.085 37.500 0.00 0.00 0.00 3.34
1703 3873 5.888724 TGCCGATTACATTTAGATCCCAAAA 59.111 36.000 0.00 0.00 0.00 2.44
1725 3896 9.783256 CAAAATTCTAAACTACGGGAAATTAGG 57.217 33.333 0.00 0.00 0.00 2.69
1742 3913 1.405872 AGGTTACGGACATATGGCGA 58.594 50.000 7.80 0.00 0.00 5.54
1819 4083 4.461198 ACTTACTTTTGCAGGTTGCTACT 58.539 39.130 2.48 0.00 45.31 2.57
1850 4114 2.886523 CACCAATTGAAGCTTCTCACCA 59.113 45.455 26.09 4.28 0.00 4.17
1854 4118 2.325583 TTGAAGCTTCTCACCAACGT 57.674 45.000 26.09 0.00 0.00 3.99
1859 4123 1.606350 GCTTCTCACCAACGTCGTCG 61.606 60.000 0.00 0.00 43.34 5.12
1865 4129 1.080974 ACCAACGTCGTCGATGACC 60.081 57.895 27.63 13.11 41.24 4.02
1881 4170 6.036844 GTCGATGACCTAATTAAGTTGTTCCC 59.963 42.308 0.00 0.00 0.00 3.97
1948 4246 2.181426 TGTTTGTTTGTACTGTGCGC 57.819 45.000 0.00 0.00 0.00 6.09
1957 4255 1.671054 TACTGTGCGCAGGGCTTTC 60.671 57.895 29.60 0.00 46.62 2.62
1965 4263 1.167851 CGCAGGGCTTTCAGATGAAA 58.832 50.000 7.71 7.71 41.29 2.69
2006 4304 3.995705 GTGAATGGCAGAGATATCAGCTC 59.004 47.826 5.32 0.00 0.00 4.09
2059 4357 2.358957 ACGCTGCTGCTGATCATTAAA 58.641 42.857 14.03 0.00 36.97 1.52
2087 4385 4.951715 TCTATACTTGAGCCAACCTAACGA 59.048 41.667 0.00 0.00 0.00 3.85
2088 4386 4.755266 ATACTTGAGCCAACCTAACGAT 57.245 40.909 0.00 0.00 0.00 3.73
2090 4388 3.074412 ACTTGAGCCAACCTAACGATTG 58.926 45.455 0.00 0.00 0.00 2.67
2091 4389 3.244422 ACTTGAGCCAACCTAACGATTGA 60.244 43.478 0.00 0.00 0.00 2.57
2092 4390 2.695359 TGAGCCAACCTAACGATTGAC 58.305 47.619 0.00 0.00 0.00 3.18
2093 4391 2.037902 TGAGCCAACCTAACGATTGACA 59.962 45.455 0.00 0.00 0.00 3.58
2094 4392 2.673368 GAGCCAACCTAACGATTGACAG 59.327 50.000 0.00 0.00 0.00 3.51
2229 4543 2.876091 CAACGGTGAAGAAGAGCGATA 58.124 47.619 0.00 0.00 37.73 2.92
2288 4616 2.485302 GCAAGGATGTTTGTTGGCCTTT 60.485 45.455 3.32 0.00 36.86 3.11
2290 4618 1.070601 AGGATGTTTGTTGGCCTTTGC 59.929 47.619 3.32 0.00 0.00 3.68
2329 4657 8.964476 ATTCCTTAATAAAGTCGATGTCACAT 57.036 30.769 0.00 0.00 0.00 3.21
2428 4768 6.509418 TTCCTCTATTGCAATAAAAAGCGT 57.491 33.333 19.32 0.00 0.00 5.07
2549 4922 7.383843 TCCAGTGTTTTGTTCTTTTCAGTTTTC 59.616 33.333 0.00 0.00 0.00 2.29
2585 4958 5.288804 GTTTTATTGTCCAGCAAGAAAGCA 58.711 37.500 8.31 0.00 45.34 3.91
2631 5812 0.392336 CTCCTAGGCTCATCTGCACC 59.608 60.000 2.96 0.00 34.04 5.01
2643 5825 0.672091 TCTGCACCGCGCTGAATTAA 60.672 50.000 5.61 0.00 44.65 1.40
2714 5904 4.574828 GGTAGATAATTTGGTGCGTGATGT 59.425 41.667 0.00 0.00 0.00 3.06
2733 5923 4.599047 TGTCCGCTCCAAATTTCAAATT 57.401 36.364 0.00 0.00 0.00 1.82
2818 6008 6.918892 TTGTTCATATATTGTTCTGACCCG 57.081 37.500 0.00 0.00 0.00 5.28
2822 6012 8.425703 TGTTCATATATTGTTCTGACCCGATTA 58.574 33.333 0.00 0.00 0.00 1.75
2859 6050 6.887013 AGATCTACTCAGATGTTCAAATGCT 58.113 36.000 0.00 0.00 41.78 3.79
2960 6151 4.668151 TTTTTGACCGGGTGCAGT 57.332 50.000 3.30 0.00 0.00 4.40
2961 6152 2.889200 TTTTTGACCGGGTGCAGTT 58.111 47.368 3.30 0.00 0.00 3.16
2962 6153 0.457851 TTTTTGACCGGGTGCAGTTG 59.542 50.000 3.30 0.00 0.00 3.16
2963 6154 0.394488 TTTTGACCGGGTGCAGTTGA 60.394 50.000 3.30 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.490759 CGATGGTGTCGGTGCTGC 61.491 66.667 0.00 0.00 46.47 5.25
11 12 4.569023 TAGCTCGGCGCGATGGTG 62.569 66.667 12.10 0.00 45.59 4.17
12 13 4.271816 CTAGCTCGGCGCGATGGT 62.272 66.667 12.10 4.03 45.59 3.55
13 14 3.484742 TTCTAGCTCGGCGCGATGG 62.485 63.158 12.10 0.00 45.59 3.51
14 15 2.026157 TTCTAGCTCGGCGCGATG 59.974 61.111 12.10 0.00 45.59 3.84
15 16 2.026301 GTTCTAGCTCGGCGCGAT 59.974 61.111 12.10 0.00 45.59 4.58
16 17 3.436924 TGTTCTAGCTCGGCGCGA 61.437 61.111 12.10 0.94 45.59 5.87
17 18 3.248171 GTGTTCTAGCTCGGCGCG 61.248 66.667 0.00 0.00 45.59 6.86
18 19 2.886124 GGTGTTCTAGCTCGGCGC 60.886 66.667 0.00 0.00 39.57 6.53
19 20 2.579787 CGGTGTTCTAGCTCGGCG 60.580 66.667 0.00 0.00 0.00 6.46
20 21 1.516603 GACGGTGTTCTAGCTCGGC 60.517 63.158 0.00 0.00 0.00 5.54
21 22 1.226323 CGACGGTGTTCTAGCTCGG 60.226 63.158 0.00 0.00 0.00 4.63
22 23 1.868251 GCGACGGTGTTCTAGCTCG 60.868 63.158 0.00 0.00 33.59 5.03
23 24 0.798771 CAGCGACGGTGTTCTAGCTC 60.799 60.000 18.54 0.00 32.05 4.09
24 25 1.213013 CAGCGACGGTGTTCTAGCT 59.787 57.895 18.54 0.00 35.06 3.32
25 26 1.805945 CCAGCGACGGTGTTCTAGC 60.806 63.158 23.95 0.00 0.00 3.42
26 27 1.153823 CCCAGCGACGGTGTTCTAG 60.154 63.158 23.95 9.42 0.00 2.43
27 28 2.967397 CCCAGCGACGGTGTTCTA 59.033 61.111 23.95 0.00 0.00 2.10
28 29 4.681978 GCCCAGCGACGGTGTTCT 62.682 66.667 23.95 0.00 0.00 3.01
42 43 4.699522 GAGACGGTGGTGTGGCCC 62.700 72.222 0.00 0.00 36.04 5.80
43 44 4.699522 GGAGACGGTGGTGTGGCC 62.700 72.222 0.00 0.00 37.90 5.36
44 45 4.699522 GGGAGACGGTGGTGTGGC 62.700 72.222 0.00 0.00 0.00 5.01
45 46 4.373116 CGGGAGACGGTGGTGTGG 62.373 72.222 0.00 0.00 39.42 4.17
109 110 4.853142 TGGGGGACGAGGGATCGG 62.853 72.222 2.46 0.00 37.45 4.18
110 111 3.537874 GTGGGGGACGAGGGATCG 61.538 72.222 0.00 0.00 39.31 3.69
111 112 1.766461 ATGTGGGGGACGAGGGATC 60.766 63.158 0.00 0.00 0.00 3.36
112 113 2.072487 CATGTGGGGGACGAGGGAT 61.072 63.158 0.00 0.00 0.00 3.85
113 114 2.687200 CATGTGGGGGACGAGGGA 60.687 66.667 0.00 0.00 0.00 4.20
114 115 3.797353 CCATGTGGGGGACGAGGG 61.797 72.222 0.00 0.00 0.00 4.30
115 116 2.687200 TCCATGTGGGGGACGAGG 60.687 66.667 0.00 0.00 37.22 4.63
116 117 2.903357 CTCCATGTGGGGGACGAG 59.097 66.667 0.00 0.00 41.01 4.18
117 118 3.399181 GCTCCATGTGGGGGACGA 61.399 66.667 0.29 0.00 41.01 4.20
118 119 3.687321 CTGCTCCATGTGGGGGACG 62.687 68.421 0.29 0.00 41.01 4.79
119 120 2.273449 CTGCTCCATGTGGGGGAC 59.727 66.667 0.29 0.00 41.01 4.46
120 121 3.731728 GCTGCTCCATGTGGGGGA 61.732 66.667 0.29 0.00 41.01 4.81
121 122 4.828296 GGCTGCTCCATGTGGGGG 62.828 72.222 0.29 0.00 41.70 5.40
122 123 4.051167 TGGCTGCTCCATGTGGGG 62.051 66.667 0.00 0.00 40.72 4.96
144 145 4.521062 ACGGGATCTCAGCAGCGC 62.521 66.667 0.00 0.00 0.00 5.92
145 146 2.584418 CACGGGATCTCAGCAGCG 60.584 66.667 0.00 0.00 0.00 5.18
146 147 2.894387 GCACGGGATCTCAGCAGC 60.894 66.667 2.31 0.00 0.00 5.25
147 148 1.521010 CTGCACGGGATCTCAGCAG 60.521 63.158 19.11 19.11 45.44 4.24
148 149 2.580815 CTGCACGGGATCTCAGCA 59.419 61.111 9.15 9.15 0.00 4.41
149 150 2.202987 CCTGCACGGGATCTCAGC 60.203 66.667 0.00 0.17 0.00 4.26
158 159 3.003173 TCTCCTTCCCCTGCACGG 61.003 66.667 0.00 0.00 0.00 4.94
159 160 1.544825 TTCTCTCCTTCCCCTGCACG 61.545 60.000 0.00 0.00 0.00 5.34
160 161 0.251634 CTTCTCTCCTTCCCCTGCAC 59.748 60.000 0.00 0.00 0.00 4.57
161 162 0.117140 TCTTCTCTCCTTCCCCTGCA 59.883 55.000 0.00 0.00 0.00 4.41
162 163 1.209261 CTTCTTCTCTCCTTCCCCTGC 59.791 57.143 0.00 0.00 0.00 4.85
163 164 1.209261 GCTTCTTCTCTCCTTCCCCTG 59.791 57.143 0.00 0.00 0.00 4.45
164 165 1.578897 GCTTCTTCTCTCCTTCCCCT 58.421 55.000 0.00 0.00 0.00 4.79
165 166 0.544223 GGCTTCTTCTCTCCTTCCCC 59.456 60.000 0.00 0.00 0.00 4.81
166 167 0.544223 GGGCTTCTTCTCTCCTTCCC 59.456 60.000 0.00 0.00 0.00 3.97
167 168 0.544223 GGGGCTTCTTCTCTCCTTCC 59.456 60.000 0.00 0.00 0.00 3.46
168 169 0.176910 CGGGGCTTCTTCTCTCCTTC 59.823 60.000 0.00 0.00 0.00 3.46
169 170 1.904990 GCGGGGCTTCTTCTCTCCTT 61.905 60.000 0.00 0.00 0.00 3.36
170 171 2.363172 GCGGGGCTTCTTCTCTCCT 61.363 63.158 0.00 0.00 0.00 3.69
171 172 2.188207 GCGGGGCTTCTTCTCTCC 59.812 66.667 0.00 0.00 0.00 3.71
172 173 2.188207 GGCGGGGCTTCTTCTCTC 59.812 66.667 0.00 0.00 0.00 3.20
173 174 3.775654 CGGCGGGGCTTCTTCTCT 61.776 66.667 0.00 0.00 0.00 3.10
191 192 2.162754 CAGTAACCGGCGTTAGCGG 61.163 63.158 6.01 0.00 46.35 5.52
192 193 2.795389 GCAGTAACCGGCGTTAGCG 61.795 63.158 6.01 0.00 46.35 4.26
193 194 3.087176 GCAGTAACCGGCGTTAGC 58.913 61.111 6.01 0.00 44.18 3.09
199 200 1.738830 TACAAGCGCAGTAACCGGC 60.739 57.895 11.47 0.00 0.00 6.13
200 201 0.389426 AGTACAAGCGCAGTAACCGG 60.389 55.000 11.47 0.00 0.00 5.28
201 202 0.713883 CAGTACAAGCGCAGTAACCG 59.286 55.000 11.47 0.54 0.00 4.44
202 203 1.459592 CACAGTACAAGCGCAGTAACC 59.540 52.381 11.47 1.39 0.00 2.85
297 298 6.430925 CCAGTCACTGTTTCAGAAATAATCCA 59.569 38.462 3.56 0.00 35.18 3.41
299 300 6.431234 ACCCAGTCACTGTTTCAGAAATAATC 59.569 38.462 3.56 0.00 35.18 1.75
309 310 1.228657 GGCGACCCAGTCACTGTTTC 61.229 60.000 3.56 0.00 32.09 2.78
401 404 2.026822 CAGTTGACTAAGACCTGGCCAT 60.027 50.000 5.51 0.00 0.00 4.40
406 409 4.264460 AGCTTCAGTTGACTAAGACCTG 57.736 45.455 0.00 0.00 0.00 4.00
413 416 5.925509 ACTTGGTTAAGCTTCAGTTGACTA 58.074 37.500 0.00 0.00 37.43 2.59
418 421 7.719633 TGATTTAGACTTGGTTAAGCTTCAGTT 59.280 33.333 0.00 0.00 37.43 3.16
425 428 8.296713 TGTCATTTGATTTAGACTTGGTTAAGC 58.703 33.333 0.00 0.00 37.43 3.09
441 1745 8.579006 TCTTTCTTGCAAGTTATGTCATTTGAT 58.421 29.630 25.19 0.00 0.00 2.57
477 1781 7.511959 AGTCTCAGAAAACAGGGTAATTTTC 57.488 36.000 2.02 2.02 42.58 2.29
487 1791 6.927294 ACTTAACCAAGTCTCAGAAAACAG 57.073 37.500 0.00 0.00 41.25 3.16
523 1857 9.841880 GTTTCAGAAAACAGGATTACTAAATCC 57.158 33.333 8.77 8.77 46.24 3.01
531 1865 5.450453 TGTGGGTTTCAGAAAACAGGATTA 58.550 37.500 13.09 0.00 45.44 1.75
543 1877 4.261741 CCTTTTCTCACATGTGGGTTTCAG 60.262 45.833 24.76 13.82 31.64 3.02
566 1900 2.359214 TCATCTATATCCATCCGCTCGC 59.641 50.000 0.00 0.00 0.00 5.03
599 1943 3.570550 CACAATTTTCCCCGTGAAGGTAA 59.429 43.478 0.00 0.00 38.74 2.85
602 1946 1.960689 ACACAATTTTCCCCGTGAAGG 59.039 47.619 0.00 0.00 40.63 3.46
610 1954 5.537295 GGGGGTACATATACACAATTTTCCC 59.463 44.000 0.00 0.00 36.31 3.97
655 2001 1.003118 TGCTAGGTAGTTGCTGGGTTG 59.997 52.381 0.00 0.00 0.00 3.77
664 2010 2.166664 GTGCTACTGCTGCTAGGTAGTT 59.833 50.000 19.96 0.09 40.48 2.24
665 2011 1.751924 GTGCTACTGCTGCTAGGTAGT 59.248 52.381 19.96 10.71 40.48 2.73
666 2012 1.067821 GGTGCTACTGCTGCTAGGTAG 59.932 57.143 17.05 17.05 40.48 3.18
694 2040 2.791383 TATTGCCTTGTGTTGTGTGC 57.209 45.000 0.00 0.00 0.00 4.57
715 2484 3.575351 GAGGTGGCGAGCAGAACGT 62.575 63.158 0.00 0.00 0.00 3.99
744 2513 0.695347 GAGGATAAGGATGCCCCAGG 59.305 60.000 0.00 0.00 37.41 4.45
750 2519 1.419387 AGTGCAGGAGGATAAGGATGC 59.581 52.381 0.00 0.00 0.00 3.91
751 2520 3.390639 AGAAGTGCAGGAGGATAAGGATG 59.609 47.826 0.00 0.00 0.00 3.51
752 2521 3.645687 GAGAAGTGCAGGAGGATAAGGAT 59.354 47.826 0.00 0.00 0.00 3.24
753 2522 3.034635 GAGAAGTGCAGGAGGATAAGGA 58.965 50.000 0.00 0.00 0.00 3.36
758 2530 0.540923 GCTGAGAAGTGCAGGAGGAT 59.459 55.000 0.00 0.00 34.00 3.24
836 2634 9.860898 ATTGGCAGAAGAATTAATTAACAGTTC 57.139 29.630 0.00 1.26 0.00 3.01
861 2675 9.661563 TGTACAAACTCGTTAGGAATTAATCAT 57.338 29.630 0.00 0.00 0.00 2.45
881 2695 5.109210 CGTCTGCATTAAGGAGATGTACAA 58.891 41.667 0.00 0.00 46.90 2.41
882 2696 4.682787 CGTCTGCATTAAGGAGATGTACA 58.317 43.478 0.00 0.00 46.90 2.90
927 2753 2.183300 CCGTTCTCCGATCCGCAA 59.817 61.111 0.00 0.00 39.56 4.85
966 2792 0.693049 ATGTCGCCCAGTCCTTCTTT 59.307 50.000 0.00 0.00 0.00 2.52
970 2796 2.045926 GCATGTCGCCCAGTCCTT 60.046 61.111 0.00 0.00 32.94 3.36
1019 2845 4.783621 TGGCATGGCGGTCAGAGC 62.784 66.667 15.27 1.64 0.00 4.09
1215 3041 2.049248 TTGTACCGACGGCCGTTC 60.049 61.111 34.65 23.23 36.31 3.95
1224 3050 0.606604 GAAGCTCCAGGTTGTACCGA 59.393 55.000 0.00 0.00 44.90 4.69
1266 3092 1.577328 CGATCACGGCAGCCTTGTTT 61.577 55.000 17.19 6.81 35.72 2.83
1393 3219 7.581011 AAATCAACGCCATTTATTTTGAGAC 57.419 32.000 0.00 0.00 30.07 3.36
1394 3220 8.519526 ACTAAATCAACGCCATTTATTTTGAGA 58.480 29.630 0.00 0.00 30.07 3.27
1396 3222 9.562583 GTACTAAATCAACGCCATTTATTTTGA 57.437 29.630 0.00 0.00 0.00 2.69
1426 3252 6.706716 CCGGATTAAAGAAAGATACTTCCTCC 59.293 42.308 0.00 0.00 0.00 4.30
1454 3346 9.802039 ATGGATTAGTTTACAACTTTAACTCCA 57.198 29.630 0.00 0.00 42.81 3.86
1565 3481 1.225704 GGCTTCACCATCTCCCCTG 59.774 63.158 0.00 0.00 38.86 4.45
1631 3547 4.023980 TCTTGATAACGGTCCAGATGACT 58.976 43.478 0.00 0.00 43.89 3.41
1659 3575 4.498345 GGCAAAAGTCATTAACAACGTGGA 60.498 41.667 0.00 0.00 0.00 4.02
1661 3577 3.420576 CGGCAAAAGTCATTAACAACGTG 59.579 43.478 0.00 0.00 0.00 4.49
1680 3604 6.385649 TTTTGGGATCTAAATGTAATCGGC 57.614 37.500 0.00 0.00 0.00 5.54
1703 3873 9.605275 GTAACCTAATTTCCCGTAGTTTAGAAT 57.395 33.333 0.00 0.00 0.00 2.40
1711 3882 4.142182 TGTCCGTAACCTAATTTCCCGTAG 60.142 45.833 0.00 0.00 0.00 3.51
1725 3896 2.729882 GTGATCGCCATATGTCCGTAAC 59.270 50.000 1.24 2.09 0.00 2.50
1742 3913 7.283625 AGAGAATATCAAGAGCGTTAGTGAT 57.716 36.000 3.26 3.26 35.05 3.06
1787 3978 8.919777 ACCTGCAAAAGTAAGTATCTAGTTTT 57.080 30.769 0.00 0.00 35.66 2.43
1819 4083 2.900716 TCAATTGGTGACTCGACACA 57.099 45.000 5.42 0.00 41.88 3.72
1850 4114 3.498927 AATTAGGTCATCGACGACGTT 57.501 42.857 12.33 2.46 40.69 3.99
1854 4118 5.957798 ACAACTTAATTAGGTCATCGACGA 58.042 37.500 0.00 0.00 32.65 4.20
1859 4123 7.939784 AAGGGAACAACTTAATTAGGTCATC 57.060 36.000 0.10 0.78 0.00 2.92
1896 4185 9.539825 TGCACTTTGCTTTATTGAAAAAGATTA 57.460 25.926 0.00 0.00 45.31 1.75
1909 4199 8.356657 ACAAACAACTATATGCACTTTGCTTTA 58.643 29.630 0.00 0.00 45.31 1.85
1927 4217 2.277834 GCGCACAGTACAAACAAACAAC 59.722 45.455 0.30 0.00 0.00 3.32
1957 4255 0.539051 AGGGGTCTCGCTTTCATCTG 59.461 55.000 0.00 0.00 31.69 2.90
1965 4263 1.261238 CCTTCTGAAGGGGTCTCGCT 61.261 60.000 25.62 0.00 45.27 4.93
2006 4304 2.295885 GGTCATCATCAGGGCAGAAAG 58.704 52.381 0.00 0.00 0.00 2.62
2083 4381 5.705441 ACATTAACACATCCTGTCAATCGTT 59.295 36.000 0.00 0.00 30.29 3.85
2088 4386 9.952030 TTATCTTACATTAACACATCCTGTCAA 57.048 29.630 0.00 0.00 30.29 3.18
2215 4529 4.736126 TCCATGTTATCGCTCTTCTTCA 57.264 40.909 0.00 0.00 0.00 3.02
2229 4543 2.020720 TCGTTTGCAGTGTTCCATGTT 58.979 42.857 0.00 0.00 0.00 2.71
2270 4598 1.070601 GCAAAGGCCAACAAACATCCT 59.929 47.619 5.01 0.00 0.00 3.24
2288 4616 4.497291 AGGAATTATAAGAACCGTGGCA 57.503 40.909 0.00 0.00 0.00 4.92
2428 4768 1.882311 GGCAATGCCGTGATCAACA 59.118 52.632 9.14 0.00 39.62 3.33
2512 4885 5.831997 ACAAAACACTGGACTTAAAGATGC 58.168 37.500 0.00 0.00 0.00 3.91
2564 4937 5.472148 CATGCTTTCTTGCTGGACAATAAA 58.528 37.500 0.00 0.00 37.72 1.40
2575 4948 2.475187 CGTCTGTAGCATGCTTTCTTGC 60.475 50.000 28.02 11.18 41.94 4.01
2585 4958 1.474478 CACCTCACTCGTCTGTAGCAT 59.526 52.381 0.00 0.00 0.00 3.79
2714 5904 7.593875 CAAATAATTTGAAATTTGGAGCGGA 57.406 32.000 8.60 0.00 43.26 5.54
2733 5923 4.499865 GCGAGCTACTCAGATGTCCAAATA 60.500 45.833 0.00 0.00 0.00 1.40
2797 5987 7.730364 AATCGGGTCAGAACAATATATGAAC 57.270 36.000 0.00 0.00 0.00 3.18
2806 5996 4.884668 AAGACTAATCGGGTCAGAACAA 57.115 40.909 0.00 0.00 36.29 2.83
2815 6005 4.253685 TCTCAGCAAAAAGACTAATCGGG 58.746 43.478 0.00 0.00 0.00 5.14
2818 6008 8.940768 AGTAGATCTCAGCAAAAAGACTAATC 57.059 34.615 0.00 0.00 0.00 1.75
2822 6012 6.352016 TGAGTAGATCTCAGCAAAAAGACT 57.648 37.500 0.00 0.00 46.77 3.24
2859 6050 0.881118 GGTGCGCTCCAAATTTCAGA 59.119 50.000 23.09 0.00 0.00 3.27
2873 6064 2.128853 AATTTGGTGCGTGAGGTGCG 62.129 55.000 0.00 0.00 34.24 5.34
2874 6065 0.878416 TAATTTGGTGCGTGAGGTGC 59.122 50.000 0.00 0.00 0.00 5.01
2945 6136 1.224870 TCAACTGCACCCGGTCAAA 59.775 52.632 0.00 0.00 0.00 2.69
2946 6137 2.911928 TCAACTGCACCCGGTCAA 59.088 55.556 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.