Multiple sequence alignment - TraesCS7B01G454800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G454800 chr7B 100.000 3681 0 0 1 3681 715323382 715319702 0.000000e+00 6798.0
1 TraesCS7B01G454800 chr7B 86.957 1794 155 34 930 2674 714901204 714899441 0.000000e+00 1943.0
2 TraesCS7B01G454800 chr7B 86.908 1795 155 33 930 2674 715155580 715153816 0.000000e+00 1940.0
3 TraesCS7B01G454800 chr7B 86.901 1794 156 34 930 2674 715083503 715081740 0.000000e+00 1938.0
4 TraesCS7B01G454800 chr7B 86.685 1795 159 33 930 2674 715122900 715121136 0.000000e+00 1917.0
5 TraesCS7B01G454800 chr7B 83.818 1032 90 37 930 1912 714950350 714949347 0.000000e+00 909.0
6 TraesCS7B01G454800 chr7B 93.514 185 10 2 2875 3058 18487263 18487446 1.300000e-69 274.0
7 TraesCS7B01G454800 chr7D 92.319 2005 100 24 930 2896 619581989 619583977 0.000000e+00 2800.0
8 TraesCS7B01G454800 chr7D 92.606 1934 96 26 988 2883 620583097 620585021 0.000000e+00 2736.0
9 TraesCS7B01G454800 chr7D 92.090 708 45 5 2198 2896 619588418 619589123 0.000000e+00 987.0
10 TraesCS7B01G454800 chr7D 92.208 154 12 0 3126 3279 620592304 620592457 6.190000e-53 219.0
11 TraesCS7B01G454800 chr7D 93.130 131 8 1 930 1059 619359509 619359379 1.350000e-44 191.0
12 TraesCS7B01G454800 chr7D 86.585 82 9 2 750 829 620582881 620582962 5.060000e-14 89.8
13 TraesCS7B01G454800 chr7A 92.196 1935 97 26 930 2817 713833394 713835321 0.000000e+00 2687.0
14 TraesCS7B01G454800 chr7A 89.340 1304 85 31 1610 2896 714209428 714210694 0.000000e+00 1589.0
15 TraesCS7B01G454800 chr7A 93.431 548 33 3 1066 1610 714031975 714032522 0.000000e+00 809.0
16 TraesCS7B01G454800 chr7A 93.431 548 33 3 1066 1610 714208836 714209383 0.000000e+00 809.0
17 TraesCS7B01G454800 chr7A 83.913 460 51 17 8 451 714030953 714031405 5.690000e-113 418.0
18 TraesCS7B01G454800 chr7A 88.529 340 18 3 3126 3457 713835515 713835841 3.450000e-105 392.0
19 TraesCS7B01G454800 chr7A 82.482 411 59 6 503 903 714031402 714031809 7.570000e-92 348.0
20 TraesCS7B01G454800 chr7A 97.576 165 4 0 2895 3059 285693571 285693735 2.160000e-72 283.0
21 TraesCS7B01G454800 chr7A 85.650 223 20 4 3246 3457 714034074 714034295 1.330000e-54 224.0
22 TraesCS7B01G454800 chr7A 94.853 136 7 0 930 1065 714031800 714031935 2.880000e-51 213.0
23 TraesCS7B01G454800 chr7A 96.154 130 5 0 936 1065 714208667 714208796 2.880000e-51 213.0
24 TraesCS7B01G454800 chr7A 83.069 189 28 4 715 903 714208486 714208670 6.320000e-38 169.0
25 TraesCS7B01G454800 chr7A 89.916 119 11 1 3126 3243 714210833 714210951 6.370000e-33 152.0
26 TraesCS7B01G454800 chr7A 87.179 117 13 1 715 829 713833183 713833299 8.290000e-27 132.0
27 TraesCS7B01G454800 chr7A 100.000 31 0 0 3457 3487 661974002 661974032 1.430000e-04 58.4
28 TraesCS7B01G454800 chr4A 86.770 1799 149 41 930 2674 700430072 700428309 0.000000e+00 1921.0
29 TraesCS7B01G454800 chrUn 92.438 1296 55 19 930 2196 93249840 93248559 0.000000e+00 1810.0
30 TraesCS7B01G454800 chrUn 92.199 705 44 5 2201 2896 295702248 295701546 0.000000e+00 987.0
31 TraesCS7B01G454800 chrUn 83.128 243 32 8 661 903 93250064 93249831 2.880000e-51 213.0
32 TraesCS7B01G454800 chr1B 80.868 507 72 14 1 500 582934965 582935453 3.470000e-100 375.0
33 TraesCS7B01G454800 chr1B 95.954 173 7 0 2887 3059 516966738 516966566 7.780000e-72 281.0
34 TraesCS7B01G454800 chr5B 95.455 220 10 0 3456 3675 154001285 154001504 5.850000e-93 351.0
35 TraesCS7B01G454800 chr5B 95.455 220 10 0 3456 3675 154055306 154055087 5.850000e-93 351.0
36 TraesCS7B01G454800 chr5B 95.238 126 6 0 3556 3681 154014706 154014831 2.240000e-47 200.0
37 TraesCS7B01G454800 chr5B 95.238 126 6 0 3556 3681 154055086 154054961 2.240000e-47 200.0
38 TraesCS7B01G454800 chr5B 97.143 35 1 0 3454 3488 415057746 415057780 3.970000e-05 60.2
39 TraesCS7B01G454800 chr2A 79.792 480 76 11 1 477 18362397 18361936 2.740000e-86 329.0
40 TraesCS7B01G454800 chr2A 97.297 37 1 0 3452 3488 137122844 137122808 3.070000e-06 63.9
41 TraesCS7B01G454800 chr2B 79.020 510 77 23 1 501 753674113 753674601 4.590000e-84 322.0
42 TraesCS7B01G454800 chr2B 81.890 381 68 1 1 380 265437110 265437490 1.650000e-83 320.0
43 TraesCS7B01G454800 chr3A 97.688 173 3 1 2888 3059 41183269 41183441 2.780000e-76 296.0
44 TraesCS7B01G454800 chr3A 91.489 47 2 1 3499 3545 642386097 642386053 3.070000e-06 63.9
45 TraesCS7B01G454800 chr5A 97.590 166 4 0 2895 3060 44940927 44940762 6.020000e-73 285.0
46 TraesCS7B01G454800 chr5A 97.590 166 4 0 2895 3060 126692564 126692729 6.020000e-73 285.0
47 TraesCS7B01G454800 chr5A 97.024 168 5 0 2895 3062 676319134 676319301 2.160000e-72 283.0
48 TraesCS7B01G454800 chr5A 95.954 173 7 0 2886 3058 592298059 592298231 7.780000e-72 281.0
49 TraesCS7B01G454800 chr5A 86.076 79 9 2 3457 3534 395074181 395074258 2.360000e-12 84.2
50 TraesCS7B01G454800 chr1A 97.024 168 5 0 2895 3062 530732854 530732687 2.160000e-72 283.0
51 TraesCS7B01G454800 chr6B 100.000 33 0 0 3456 3488 642976058 642976090 1.100000e-05 62.1
52 TraesCS7B01G454800 chr3B 87.500 56 4 2 171 223 414471057 414471112 1.100000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G454800 chr7B 715319702 715323382 3680 True 6798.000000 6798 100.000000 1 3681 1 chr7B.!!$R6 3680
1 TraesCS7B01G454800 chr7B 714899441 714901204 1763 True 1943.000000 1943 86.957000 930 2674 1 chr7B.!!$R1 1744
2 TraesCS7B01G454800 chr7B 715153816 715155580 1764 True 1940.000000 1940 86.908000 930 2674 1 chr7B.!!$R5 1744
3 TraesCS7B01G454800 chr7B 715081740 715083503 1763 True 1938.000000 1938 86.901000 930 2674 1 chr7B.!!$R3 1744
4 TraesCS7B01G454800 chr7B 715121136 715122900 1764 True 1917.000000 1917 86.685000 930 2674 1 chr7B.!!$R4 1744
5 TraesCS7B01G454800 chr7B 714949347 714950350 1003 True 909.000000 909 83.818000 930 1912 1 chr7B.!!$R2 982
6 TraesCS7B01G454800 chr7D 619581989 619583977 1988 False 2800.000000 2800 92.319000 930 2896 1 chr7D.!!$F1 1966
7 TraesCS7B01G454800 chr7D 620582881 620585021 2140 False 1412.900000 2736 89.595500 750 2883 2 chr7D.!!$F4 2133
8 TraesCS7B01G454800 chr7D 619588418 619589123 705 False 987.000000 987 92.090000 2198 2896 1 chr7D.!!$F2 698
9 TraesCS7B01G454800 chr7A 713833183 713835841 2658 False 1070.333333 2687 89.301333 715 3457 3 chr7A.!!$F3 2742
10 TraesCS7B01G454800 chr7A 714208486 714210951 2465 False 586.400000 1589 90.382000 715 3243 5 chr7A.!!$F5 2528
11 TraesCS7B01G454800 chr7A 714030953 714034295 3342 False 402.400000 809 88.065800 8 3457 5 chr7A.!!$F4 3449
12 TraesCS7B01G454800 chr4A 700428309 700430072 1763 True 1921.000000 1921 86.770000 930 2674 1 chr4A.!!$R1 1744
13 TraesCS7B01G454800 chrUn 93248559 93250064 1505 True 1011.500000 1810 87.783000 661 2196 2 chrUn.!!$R2 1535
14 TraesCS7B01G454800 chrUn 295701546 295702248 702 True 987.000000 987 92.199000 2201 2896 1 chrUn.!!$R1 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 342 0.034767 ATCTGGTGTGCAGGTGATGG 60.035 55.0 0.0 0.0 0.0 3.51 F
1054 1112 0.178849 ATCCCATCCCCATCTCCCTC 60.179 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1827 0.324943 GCTGCAAGGACAAGGGAGTA 59.675 55.0 0.00 0.0 0.00 2.59 R
2937 3163 0.179020 CATCCGTATGTGGTGGCCAT 60.179 55.0 9.72 0.0 35.28 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.530269 AAAAGCTTCATCTAGCAATGAAAAAG 57.470 30.769 0.00 0.00 43.22 2.27
55 56 4.537135 AAGGTTTCAAGCATAGAGACGA 57.463 40.909 0.00 0.00 0.00 4.20
58 59 4.932200 AGGTTTCAAGCATAGAGACGAAAG 59.068 41.667 0.00 0.00 0.00 2.62
59 60 4.436183 GGTTTCAAGCATAGAGACGAAAGC 60.436 45.833 0.00 0.00 34.83 3.51
64 65 1.869767 GCATAGAGACGAAAGCCATGG 59.130 52.381 7.63 7.63 0.00 3.66
65 66 2.483714 GCATAGAGACGAAAGCCATGGA 60.484 50.000 18.40 0.00 0.00 3.41
66 67 2.961526 TAGAGACGAAAGCCATGGAC 57.038 50.000 18.40 7.03 0.00 4.02
67 68 0.108615 AGAGACGAAAGCCATGGACG 60.109 55.000 18.40 16.56 0.00 4.79
84 85 4.728058 GGCAACGAAAAGCTGCAA 57.272 50.000 1.02 0.00 43.38 4.08
85 86 2.216203 GGCAACGAAAAGCTGCAAC 58.784 52.632 1.02 0.00 43.38 4.17
86 87 1.215014 GGCAACGAAAAGCTGCAACC 61.215 55.000 1.02 0.00 43.38 3.77
87 88 1.539776 GCAACGAAAAGCTGCAACCG 61.540 55.000 1.02 2.32 41.35 4.44
88 89 0.934436 CAACGAAAAGCTGCAACCGG 60.934 55.000 0.00 0.00 0.00 5.28
89 90 2.070654 AACGAAAAGCTGCAACCGGG 62.071 55.000 6.32 0.00 0.00 5.73
104 105 1.165270 CCGGGAGTTACAAAAGCTGG 58.835 55.000 0.00 0.00 0.00 4.85
149 150 5.355071 TCAAAAATCATGTCTTAGCTGCGAT 59.645 36.000 0.00 0.00 0.00 4.58
150 151 5.415415 AAAATCATGTCTTAGCTGCGATC 57.585 39.130 0.00 0.00 0.00 3.69
151 152 2.515926 TCATGTCTTAGCTGCGATCC 57.484 50.000 0.00 0.00 0.00 3.36
152 153 1.756538 TCATGTCTTAGCTGCGATCCA 59.243 47.619 0.00 0.00 0.00 3.41
153 154 2.366590 TCATGTCTTAGCTGCGATCCAT 59.633 45.455 0.00 0.00 0.00 3.41
154 155 2.229675 TGTCTTAGCTGCGATCCATG 57.770 50.000 0.00 0.00 0.00 3.66
155 156 1.202568 TGTCTTAGCTGCGATCCATGG 60.203 52.381 4.97 4.97 0.00 3.66
156 157 0.250038 TCTTAGCTGCGATCCATGGC 60.250 55.000 6.96 0.00 0.00 4.40
157 158 0.533531 CTTAGCTGCGATCCATGGCA 60.534 55.000 6.96 0.00 39.22 4.92
189 196 2.226437 CGTTTTGCTGCAACCATAGTCT 59.774 45.455 15.72 0.00 0.00 3.24
204 212 4.142902 CCATAGTCTGTTTTGCTACAACCG 60.143 45.833 0.00 0.00 0.00 4.44
205 213 3.188159 AGTCTGTTTTGCTACAACCGA 57.812 42.857 0.00 0.00 0.00 4.69
210 218 3.651206 TGTTTTGCTACAACCGACGATA 58.349 40.909 0.00 0.00 0.00 2.92
211 219 4.056740 TGTTTTGCTACAACCGACGATAA 58.943 39.130 0.00 0.00 0.00 1.75
222 230 5.179742 ACAACCGACGATAAAATTTGCTACA 59.820 36.000 0.00 0.00 0.00 2.74
225 233 6.081693 ACCGACGATAAAATTTGCTACAAAC 58.918 36.000 0.00 0.00 0.00 2.93
254 262 1.089920 GGCTGTCATGGTGCTACAAG 58.910 55.000 0.00 0.00 0.00 3.16
257 265 2.771089 CTGTCATGGTGCTACAAGTGT 58.229 47.619 0.00 0.00 0.00 3.55
263 271 0.673644 GGTGCTACAAGTGTGCCGAT 60.674 55.000 0.00 0.00 0.00 4.18
276 284 2.791927 CCGATGAGCACGACGAGA 59.208 61.111 0.00 0.00 0.00 4.04
277 285 1.356979 CCGATGAGCACGACGAGAT 59.643 57.895 0.00 0.00 0.00 2.75
282 290 1.913317 TGAGCACGACGAGATTGATG 58.087 50.000 0.00 0.00 0.00 3.07
290 298 0.620410 ACGAGATTGATGGGGGTGGA 60.620 55.000 0.00 0.00 0.00 4.02
293 301 2.590821 GAGATTGATGGGGGTGGAATG 58.409 52.381 0.00 0.00 0.00 2.67
297 305 0.614415 TGATGGGGGTGGAATGTTGC 60.614 55.000 0.00 0.00 0.00 4.17
308 316 1.750778 GGAATGTTGCGAACCATGGAT 59.249 47.619 21.47 6.44 0.00 3.41
330 338 0.738762 CGAGATCTGGTGTGCAGGTG 60.739 60.000 0.00 0.00 0.00 4.00
332 340 1.209019 GAGATCTGGTGTGCAGGTGAT 59.791 52.381 0.00 0.00 0.00 3.06
334 342 0.034767 ATCTGGTGTGCAGGTGATGG 60.035 55.000 0.00 0.00 0.00 3.51
344 352 4.344865 GGTGATGGGTGGCACGGT 62.345 66.667 12.17 0.00 35.91 4.83
428 441 1.726265 GTGGCGACCTACTACCTCG 59.274 63.158 0.00 0.00 0.00 4.63
430 443 2.192187 GGCGACCTACTACCTCGGG 61.192 68.421 0.00 0.00 0.00 5.14
453 466 3.136123 CGGCAGGGCAGGATGTTG 61.136 66.667 0.00 0.00 39.31 3.33
454 467 3.455469 GGCAGGGCAGGATGTTGC 61.455 66.667 0.00 0.00 43.34 4.17
455 468 2.677524 GCAGGGCAGGATGTTGCA 60.678 61.111 0.11 0.00 45.86 4.08
458 471 3.443045 GGGCAGGATGTTGCACGG 61.443 66.667 0.11 0.00 45.86 4.94
459 472 4.120331 GGCAGGATGTTGCACGGC 62.120 66.667 0.11 0.00 45.86 5.68
460 473 4.465512 GCAGGATGTTGCACGGCG 62.466 66.667 4.80 4.80 43.53 6.46
461 474 2.741985 CAGGATGTTGCACGGCGA 60.742 61.111 16.62 0.00 0.00 5.54
462 475 2.434884 AGGATGTTGCACGGCGAG 60.435 61.111 16.62 7.03 0.00 5.03
463 476 3.499737 GGATGTTGCACGGCGAGG 61.500 66.667 16.62 6.41 0.00 4.63
464 477 3.499737 GATGTTGCACGGCGAGGG 61.500 66.667 16.62 3.42 0.00 4.30
486 499 4.408821 GCCATGTCGGGGTGCTGA 62.409 66.667 0.00 0.00 34.06 4.26
487 500 2.350895 CCATGTCGGGGTGCTGAA 59.649 61.111 0.00 0.00 0.00 3.02
488 501 1.303236 CCATGTCGGGGTGCTGAAA 60.303 57.895 0.00 0.00 0.00 2.69
489 502 1.586154 CCATGTCGGGGTGCTGAAAC 61.586 60.000 0.00 0.00 0.00 2.78
490 503 1.303317 ATGTCGGGGTGCTGAAACC 60.303 57.895 0.00 0.00 39.71 3.27
519 532 2.461110 CGATACACACGGCAAGCCC 61.461 63.158 5.34 0.00 0.00 5.19
520 533 1.376683 GATACACACGGCAAGCCCA 60.377 57.895 5.34 0.00 0.00 5.36
532 545 3.454587 AAGCCCACGACGAGCACAA 62.455 57.895 0.00 0.00 0.00 3.33
538 551 1.227031 ACGACGAGCACAACCGAAA 60.227 52.632 0.00 0.00 0.00 3.46
567 583 0.449388 CGGAGGCTCAAAGTCATTGC 59.551 55.000 17.69 0.00 38.98 3.56
569 585 1.742268 GGAGGCTCAAAGTCATTGCTC 59.258 52.381 17.69 0.00 38.98 4.26
571 587 2.677337 GAGGCTCAAAGTCATTGCTCTC 59.323 50.000 10.25 0.00 38.98 3.20
573 589 1.202009 GCTCAAAGTCATTGCTCTCGC 60.202 52.381 0.00 0.00 38.98 5.03
575 591 2.341257 TCAAAGTCATTGCTCTCGCTC 58.659 47.619 0.00 0.00 38.98 5.03
577 593 2.292103 AAGTCATTGCTCTCGCTCTC 57.708 50.000 0.00 0.00 36.97 3.20
587 604 0.312102 TCTCGCTCTCTGTGTGTGTG 59.688 55.000 0.00 0.00 0.00 3.82
602 619 2.011222 TGTGTGTTTGGACGAAGGAAC 58.989 47.619 0.00 0.00 0.00 3.62
718 741 2.941453 TGCCTAGCACTCGACTAAAG 57.059 50.000 0.00 0.00 31.71 1.85
722 745 3.119424 GCCTAGCACTCGACTAAAGTTCT 60.119 47.826 0.00 0.00 0.00 3.01
731 754 3.512329 TCGACTAAAGTTCTGTATGGGCA 59.488 43.478 0.00 0.00 0.00 5.36
790 813 2.683933 GGTGAGGAGGGGAAGCGA 60.684 66.667 0.00 0.00 0.00 4.93
800 825 1.683418 GGGGAAGCGAACGTAGGGAT 61.683 60.000 0.00 0.00 0.00 3.85
829 854 4.494091 TCTTGAGGATGAATCTGGAACC 57.506 45.455 0.00 0.00 0.00 3.62
832 857 2.432146 TGAGGATGAATCTGGAACCTCG 59.568 50.000 0.00 0.00 44.46 4.63
833 858 1.139853 AGGATGAATCTGGAACCTCGC 59.860 52.381 0.00 0.00 0.00 5.03
834 859 1.134401 GGATGAATCTGGAACCTCGCA 60.134 52.381 0.00 0.00 0.00 5.10
836 861 0.250234 TGAATCTGGAACCTCGCAGG 59.750 55.000 1.16 1.16 42.49 4.85
837 862 1.078143 AATCTGGAACCTCGCAGGC 60.078 57.895 2.50 0.00 39.63 4.85
839 864 1.841302 ATCTGGAACCTCGCAGGCAA 61.841 55.000 2.50 0.00 39.63 4.52
841 866 1.580845 CTGGAACCTCGCAGGCAAAG 61.581 60.000 2.50 0.00 39.63 2.77
842 867 1.302511 GGAACCTCGCAGGCAAAGA 60.303 57.895 2.50 0.00 39.63 2.52
843 868 0.889186 GGAACCTCGCAGGCAAAGAA 60.889 55.000 2.50 0.00 39.63 2.52
844 869 0.951558 GAACCTCGCAGGCAAAGAAA 59.048 50.000 2.50 0.00 39.63 2.52
845 870 1.541588 GAACCTCGCAGGCAAAGAAAT 59.458 47.619 2.50 0.00 39.63 2.17
846 871 2.489938 ACCTCGCAGGCAAAGAAATA 57.510 45.000 2.50 0.00 39.63 1.40
847 872 2.790433 ACCTCGCAGGCAAAGAAATAA 58.210 42.857 2.50 0.00 39.63 1.40
848 873 3.153919 ACCTCGCAGGCAAAGAAATAAA 58.846 40.909 2.50 0.00 39.63 1.40
849 874 3.572255 ACCTCGCAGGCAAAGAAATAAAA 59.428 39.130 2.50 0.00 39.63 1.52
850 875 4.220602 ACCTCGCAGGCAAAGAAATAAAAT 59.779 37.500 2.50 0.00 39.63 1.82
856 912 9.213799 TCGCAGGCAAAGAAATAAAATAAAAAT 57.786 25.926 0.00 0.00 0.00 1.82
897 953 1.279271 CTTCCCCTCCAAGTTGATCGT 59.721 52.381 3.87 0.00 0.00 3.73
898 954 0.902531 TCCCCTCCAAGTTGATCGTC 59.097 55.000 3.87 0.00 0.00 4.20
899 955 0.613260 CCCCTCCAAGTTGATCGTCA 59.387 55.000 3.87 0.00 0.00 4.35
900 956 1.406069 CCCCTCCAAGTTGATCGTCAG 60.406 57.143 3.87 0.00 0.00 3.51
901 957 1.550524 CCCTCCAAGTTGATCGTCAGA 59.449 52.381 3.87 0.00 0.00 3.27
902 958 2.417924 CCCTCCAAGTTGATCGTCAGAG 60.418 54.545 3.87 0.36 0.00 3.35
903 959 2.232452 CCTCCAAGTTGATCGTCAGAGT 59.768 50.000 3.87 0.00 0.00 3.24
904 960 3.506810 CTCCAAGTTGATCGTCAGAGTC 58.493 50.000 3.87 0.00 0.00 3.36
905 961 2.095212 TCCAAGTTGATCGTCAGAGTCG 60.095 50.000 3.87 0.00 0.00 4.18
906 962 2.351835 CCAAGTTGATCGTCAGAGTCGT 60.352 50.000 3.87 0.00 0.00 4.34
907 963 3.309388 CAAGTTGATCGTCAGAGTCGTT 58.691 45.455 0.00 0.00 0.00 3.85
908 964 2.935042 AGTTGATCGTCAGAGTCGTTG 58.065 47.619 0.00 0.00 0.00 4.10
909 965 1.387084 GTTGATCGTCAGAGTCGTTGC 59.613 52.381 0.00 0.00 0.00 4.17
910 966 0.596082 TGATCGTCAGAGTCGTTGCA 59.404 50.000 0.00 0.00 0.00 4.08
911 967 1.000717 TGATCGTCAGAGTCGTTGCAA 60.001 47.619 0.00 0.00 0.00 4.08
912 968 2.058798 GATCGTCAGAGTCGTTGCAAA 58.941 47.619 0.00 0.00 0.00 3.68
913 969 1.929230 TCGTCAGAGTCGTTGCAAAA 58.071 45.000 0.00 0.00 0.00 2.44
914 970 2.272678 TCGTCAGAGTCGTTGCAAAAA 58.727 42.857 0.00 0.00 0.00 1.94
983 1040 3.034635 CAGGAGCAGGACACTAAGGTAT 58.965 50.000 0.00 0.00 0.00 2.73
998 1055 4.481368 AAGGTATACGTGCATTCTTCCA 57.519 40.909 0.00 0.00 0.00 3.53
1054 1112 0.178849 ATCCCATCCCCATCTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
1131 1228 3.245407 TGTCTGTCTTCTCCTCATCCTCA 60.245 47.826 0.00 0.00 0.00 3.86
1280 1404 3.403038 CCGTTCTTCATGTTCTTCCAGT 58.597 45.455 0.00 0.00 0.00 4.00
1315 1439 3.380320 ACGTACTGACATGATCGATCCAA 59.620 43.478 22.31 5.39 0.00 3.53
1439 1563 1.074248 AACCGTCCCAACATCACCC 59.926 57.895 0.00 0.00 0.00 4.61
1489 1613 2.530701 CCCTACGGCTCCTATCTCAAT 58.469 52.381 0.00 0.00 0.00 2.57
1519 1643 1.760613 TCCACGTCTCCTGTTTTGACT 59.239 47.619 0.00 0.00 0.00 3.41
1650 1827 9.692325 GCATCCAAAATAATCCTTCCTATCTAT 57.308 33.333 0.00 0.00 0.00 1.98
1777 1954 3.114616 CGGCGCTGGTGTCTTCAG 61.115 66.667 8.83 0.00 35.49 3.02
2026 2209 8.854614 ATTAATTATACTGATCTCCACCTTGC 57.145 34.615 0.00 0.00 0.00 4.01
2027 2210 6.506538 AATTATACTGATCTCCACCTTGCT 57.493 37.500 0.00 0.00 0.00 3.91
2067 2250 2.933495 TGCAGCTCGATACTTACGTT 57.067 45.000 0.00 0.00 0.00 3.99
2187 2370 4.929808 ACACCTTTGCATACTAGTTCGAAG 59.070 41.667 0.00 6.59 0.00 3.79
2299 2482 5.446260 TCACATACTGGACCTCTACACTA 57.554 43.478 0.00 0.00 0.00 2.74
2347 2530 5.456186 GCCCCTGGTAAATACACATATCTGT 60.456 44.000 0.00 0.00 35.44 3.41
2447 2644 1.753078 TGGAGGGTCGGATGAGTCG 60.753 63.158 0.00 0.00 0.00 4.18
2470 2667 4.647424 AGAATTTCAACGGCAAACTGAA 57.353 36.364 0.00 0.00 0.00 3.02
2480 2677 1.724582 GCAAACTGAACCCGTGCTGT 61.725 55.000 0.00 0.00 32.43 4.40
2591 2788 3.238497 TGGGACCAGACACACCCG 61.238 66.667 0.00 0.00 44.70 5.28
2749 2947 5.183228 GCTGGTGCAATACTCTTAGGTTAA 58.817 41.667 0.00 0.00 39.41 2.01
2750 2948 5.823045 GCTGGTGCAATACTCTTAGGTTAAT 59.177 40.000 0.00 0.00 39.41 1.40
2791 2993 7.797038 TTAGGTAGAAGGTTGTGAGTTTTTC 57.203 36.000 0.00 0.00 0.00 2.29
2814 3016 2.482839 CCCTTGTGTTTTGATGGCGTTT 60.483 45.455 0.00 0.00 0.00 3.60
2815 3017 3.194062 CCTTGTGTTTTGATGGCGTTTT 58.806 40.909 0.00 0.00 0.00 2.43
2816 3018 4.363999 CCTTGTGTTTTGATGGCGTTTTA 58.636 39.130 0.00 0.00 0.00 1.52
2817 3019 4.444056 CCTTGTGTTTTGATGGCGTTTTAG 59.556 41.667 0.00 0.00 0.00 1.85
2818 3020 4.640789 TGTGTTTTGATGGCGTTTTAGT 57.359 36.364 0.00 0.00 0.00 2.24
2819 3021 4.602995 TGTGTTTTGATGGCGTTTTAGTC 58.397 39.130 0.00 0.00 0.00 2.59
2820 3022 4.096532 TGTGTTTTGATGGCGTTTTAGTCA 59.903 37.500 0.00 0.00 0.00 3.41
2821 3023 5.038033 GTGTTTTGATGGCGTTTTAGTCAA 58.962 37.500 0.00 0.00 0.00 3.18
2822 3024 5.173131 GTGTTTTGATGGCGTTTTAGTCAAG 59.827 40.000 0.00 0.00 31.28 3.02
2823 3025 5.163602 TGTTTTGATGGCGTTTTAGTCAAGT 60.164 36.000 0.00 0.00 31.28 3.16
2824 3026 6.038382 TGTTTTGATGGCGTTTTAGTCAAGTA 59.962 34.615 0.00 0.00 31.28 2.24
2825 3027 5.600908 TTGATGGCGTTTTAGTCAAGTAC 57.399 39.130 0.00 0.00 0.00 2.73
2826 3028 4.633175 TGATGGCGTTTTAGTCAAGTACA 58.367 39.130 0.00 0.00 0.00 2.90
2827 3029 5.057819 TGATGGCGTTTTAGTCAAGTACAA 58.942 37.500 0.00 0.00 0.00 2.41
2828 3030 5.703592 TGATGGCGTTTTAGTCAAGTACAAT 59.296 36.000 0.00 0.00 0.00 2.71
2829 3031 6.874664 TGATGGCGTTTTAGTCAAGTACAATA 59.125 34.615 0.00 0.00 0.00 1.90
2830 3032 6.470557 TGGCGTTTTAGTCAAGTACAATAC 57.529 37.500 0.00 0.00 0.00 1.89
2831 3033 6.225318 TGGCGTTTTAGTCAAGTACAATACT 58.775 36.000 0.00 0.00 41.73 2.12
2832 3034 6.366877 TGGCGTTTTAGTCAAGTACAATACTC 59.633 38.462 0.00 0.00 38.26 2.59
2833 3035 6.589139 GGCGTTTTAGTCAAGTACAATACTCT 59.411 38.462 0.00 0.00 38.26 3.24
2834 3036 7.117379 GGCGTTTTAGTCAAGTACAATACTCTT 59.883 37.037 0.00 0.00 38.26 2.85
2835 3037 8.493547 GCGTTTTAGTCAAGTACAATACTCTTT 58.506 33.333 0.00 0.00 38.26 2.52
2900 3126 9.287818 TGGTTTTATCCCCTATATATTACTCCC 57.712 37.037 0.00 0.00 0.00 4.30
2901 3127 9.516788 GGTTTTATCCCCTATATATTACTCCCT 57.483 37.037 0.00 0.00 0.00 4.20
2903 3129 9.739737 TTTTATCCCCTATATATTACTCCCTCC 57.260 37.037 0.00 0.00 0.00 4.30
2904 3130 5.399052 TCCCCTATATATTACTCCCTCCG 57.601 47.826 0.00 0.00 0.00 4.63
2905 3131 4.797919 TCCCCTATATATTACTCCCTCCGT 59.202 45.833 0.00 0.00 0.00 4.69
2906 3132 5.257101 TCCCCTATATATTACTCCCTCCGTT 59.743 44.000 0.00 0.00 0.00 4.44
2907 3133 5.597594 CCCCTATATATTACTCCCTCCGTTC 59.402 48.000 0.00 0.00 0.00 3.95
2908 3134 5.597594 CCCTATATATTACTCCCTCCGTTCC 59.402 48.000 0.00 0.00 0.00 3.62
2909 3135 6.433441 CCTATATATTACTCCCTCCGTTCCT 58.567 44.000 0.00 0.00 0.00 3.36
2910 3136 7.367186 CCCTATATATTACTCCCTCCGTTCCTA 60.367 44.444 0.00 0.00 0.00 2.94
2911 3137 8.057623 CCTATATATTACTCCCTCCGTTCCTAA 58.942 40.741 0.00 0.00 0.00 2.69
2912 3138 9.471702 CTATATATTACTCCCTCCGTTCCTAAA 57.528 37.037 0.00 0.00 0.00 1.85
2913 3139 8.912614 ATATATTACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
2915 3141 8.912614 ATATTACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2916 3142 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2917 3143 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2918 3144 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2919 3145 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2920 3146 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2921 3147 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2922 3148 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2923 3149 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2924 3150 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2925 3151 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2926 3152 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2927 3153 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2928 3154 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2942 3168 8.281212 TGTCTTTCTAGAGATTTTAAATGGCC 57.719 34.615 0.00 0.00 0.00 5.36
2943 3169 7.888021 TGTCTTTCTAGAGATTTTAAATGGCCA 59.112 33.333 8.56 8.56 0.00 5.36
2944 3170 8.184848 GTCTTTCTAGAGATTTTAAATGGCCAC 58.815 37.037 8.16 0.00 0.00 5.01
2945 3171 7.339466 TCTTTCTAGAGATTTTAAATGGCCACC 59.661 37.037 8.16 0.00 0.00 4.61
2946 3172 6.073447 TCTAGAGATTTTAAATGGCCACCA 57.927 37.500 8.16 0.00 38.19 4.17
2947 3173 5.885912 TCTAGAGATTTTAAATGGCCACCAC 59.114 40.000 8.16 0.00 35.80 4.16
2948 3174 4.415596 AGAGATTTTAAATGGCCACCACA 58.584 39.130 8.16 0.00 35.80 4.17
2949 3175 5.025453 AGAGATTTTAAATGGCCACCACAT 58.975 37.500 8.16 0.00 35.80 3.21
2950 3176 6.194235 AGAGATTTTAAATGGCCACCACATA 58.806 36.000 8.16 0.00 35.80 2.29
2951 3177 6.096846 AGAGATTTTAAATGGCCACCACATAC 59.903 38.462 8.16 0.00 35.80 2.39
2952 3178 4.442375 TTTTAAATGGCCACCACATACG 57.558 40.909 8.16 0.00 35.80 3.06
2953 3179 2.045561 TAAATGGCCACCACATACGG 57.954 50.000 8.16 0.00 35.80 4.02
2954 3180 0.329931 AAATGGCCACCACATACGGA 59.670 50.000 8.16 0.00 35.80 4.69
2955 3181 0.550914 AATGGCCACCACATACGGAT 59.449 50.000 8.16 0.00 35.80 4.18
2956 3182 0.179020 ATGGCCACCACATACGGATG 60.179 55.000 8.16 5.94 35.80 3.51
2958 3184 0.466543 GGCCACCACATACGGATGTA 59.533 55.000 14.23 0.00 44.82 2.29
2959 3185 1.071699 GGCCACCACATACGGATGTAT 59.928 52.381 14.23 1.38 44.82 2.29
2960 3186 2.300723 GGCCACCACATACGGATGTATA 59.699 50.000 14.23 0.00 44.82 1.47
2961 3187 3.055385 GGCCACCACATACGGATGTATAT 60.055 47.826 14.23 0.00 44.82 0.86
2962 3188 4.160814 GGCCACCACATACGGATGTATATA 59.839 45.833 14.23 0.00 44.82 0.86
2963 3189 5.348986 GCCACCACATACGGATGTATATAG 58.651 45.833 14.23 0.00 44.82 1.31
2964 3190 5.126545 GCCACCACATACGGATGTATATAGA 59.873 44.000 14.23 0.00 44.82 1.98
2965 3191 6.561614 CCACCACATACGGATGTATATAGAC 58.438 44.000 14.23 0.00 44.82 2.59
2966 3192 6.152154 CCACCACATACGGATGTATATAGACA 59.848 42.308 14.23 2.07 44.82 3.41
2967 3193 7.147897 CCACCACATACGGATGTATATAGACAT 60.148 40.741 14.23 12.70 44.82 3.06
2968 3194 8.899771 CACCACATACGGATGTATATAGACATA 58.100 37.037 14.23 0.00 44.82 2.29
2969 3195 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
2999 3225 7.617041 AGTGTAGATTTACTCATTTTGCTCC 57.383 36.000 0.00 0.00 0.00 4.70
3000 3226 6.313905 AGTGTAGATTTACTCATTTTGCTCCG 59.686 38.462 0.00 0.00 0.00 4.63
3001 3227 6.092259 GTGTAGATTTACTCATTTTGCTCCGT 59.908 38.462 0.00 0.00 0.00 4.69
3002 3228 7.277098 GTGTAGATTTACTCATTTTGCTCCGTA 59.723 37.037 0.00 0.00 0.00 4.02
3003 3229 7.985184 TGTAGATTTACTCATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
3004 3230 7.251704 AGATTTACTCATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
3005 3231 6.823689 AGATTTACTCATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
3006 3232 7.985184 AGATTTACTCATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
3007 3233 7.534085 TTTACTCATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
3008 3234 5.086104 ACTCATTTTGCTCCGTATGTAGT 57.914 39.130 0.00 0.00 0.00 2.73
3009 3235 5.109903 ACTCATTTTGCTCCGTATGTAGTC 58.890 41.667 0.00 0.00 0.00 2.59
3010 3236 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3011 3237 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3012 3238 2.953466 TTGCTCCGTATGTAGTCACC 57.047 50.000 0.00 0.00 0.00 4.02
3013 3239 1.842052 TGCTCCGTATGTAGTCACCA 58.158 50.000 0.00 0.00 0.00 4.17
3014 3240 2.384828 TGCTCCGTATGTAGTCACCAT 58.615 47.619 0.00 0.00 0.00 3.55
3015 3241 2.764010 TGCTCCGTATGTAGTCACCATT 59.236 45.455 0.00 0.00 0.00 3.16
3016 3242 3.196901 TGCTCCGTATGTAGTCACCATTT 59.803 43.478 0.00 0.00 0.00 2.32
3017 3243 3.555956 GCTCCGTATGTAGTCACCATTTG 59.444 47.826 0.00 0.00 0.00 2.32
3018 3244 4.679639 GCTCCGTATGTAGTCACCATTTGA 60.680 45.833 0.00 0.00 0.00 2.69
3019 3245 5.408880 TCCGTATGTAGTCACCATTTGAA 57.591 39.130 0.00 0.00 35.39 2.69
3020 3246 5.795972 TCCGTATGTAGTCACCATTTGAAA 58.204 37.500 0.00 0.00 35.39 2.69
3021 3247 5.640357 TCCGTATGTAGTCACCATTTGAAAC 59.360 40.000 0.00 0.00 35.39 2.78
3022 3248 5.163794 CCGTATGTAGTCACCATTTGAAACC 60.164 44.000 0.00 0.00 35.39 3.27
3023 3249 5.642063 CGTATGTAGTCACCATTTGAAACCT 59.358 40.000 0.00 0.00 35.39 3.50
3024 3250 6.183360 CGTATGTAGTCACCATTTGAAACCTC 60.183 42.308 0.00 0.00 35.39 3.85
3025 3251 5.304686 TGTAGTCACCATTTGAAACCTCT 57.695 39.130 0.00 0.00 35.39 3.69
3026 3252 6.428083 TGTAGTCACCATTTGAAACCTCTA 57.572 37.500 0.00 0.00 35.39 2.43
3027 3253 6.464222 TGTAGTCACCATTTGAAACCTCTAG 58.536 40.000 0.00 0.00 35.39 2.43
3028 3254 5.825593 AGTCACCATTTGAAACCTCTAGA 57.174 39.130 0.00 0.00 35.39 2.43
3029 3255 6.187727 AGTCACCATTTGAAACCTCTAGAA 57.812 37.500 0.00 0.00 35.39 2.10
3030 3256 6.601332 AGTCACCATTTGAAACCTCTAGAAA 58.399 36.000 0.00 0.00 35.39 2.52
3031 3257 6.712547 AGTCACCATTTGAAACCTCTAGAAAG 59.287 38.462 0.00 0.00 35.39 2.62
3032 3258 6.710744 GTCACCATTTGAAACCTCTAGAAAGA 59.289 38.462 0.00 0.00 35.39 2.52
3033 3259 6.710744 TCACCATTTGAAACCTCTAGAAAGAC 59.289 38.462 0.00 0.00 0.00 3.01
3034 3260 6.486657 CACCATTTGAAACCTCTAGAAAGACA 59.513 38.462 0.00 0.00 0.00 3.41
3035 3261 7.013274 CACCATTTGAAACCTCTAGAAAGACAA 59.987 37.037 0.00 0.00 0.00 3.18
3036 3262 7.559897 ACCATTTGAAACCTCTAGAAAGACAAA 59.440 33.333 0.00 4.41 0.00 2.83
3037 3263 8.579863 CCATTTGAAACCTCTAGAAAGACAAAT 58.420 33.333 13.64 13.64 36.38 2.32
3049 3275 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3050 3276 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3051 3277 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3052 3278 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3053 3279 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3054 3280 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3055 3281 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3078 3304 8.451748 GGAGTAGTTGATATTGAAAAGTTGGTC 58.548 37.037 0.00 0.00 0.00 4.02
3103 3331 6.183360 CGTATATGGGTGAATATCTAGCAGCT 60.183 42.308 0.00 0.00 0.00 4.24
3112 3340 8.040132 GGTGAATATCTAGCAGCTAATGAGAAT 58.960 37.037 3.09 0.00 0.00 2.40
3121 3356 3.693085 CAGCTAATGAGAATGTGCTTGGT 59.307 43.478 0.00 0.00 0.00 3.67
3122 3357 4.157289 CAGCTAATGAGAATGTGCTTGGTT 59.843 41.667 0.00 0.00 0.00 3.67
3161 3466 2.436646 CGTCTGCCCATGGTGTCC 60.437 66.667 11.73 0.00 0.00 4.02
3208 3513 3.053896 GGTGCACGGGTTAGCCAC 61.054 66.667 11.45 0.00 36.17 5.01
3252 3557 1.403647 CGTCGGGCACTACTCAATGAA 60.404 52.381 0.00 0.00 0.00 2.57
3312 3625 6.379988 ACCAATTGTCTAGACCTTTTGTTTGT 59.620 34.615 20.11 10.75 0.00 2.83
3444 3760 5.255687 TCACCATGCAAACACTAGATTGAT 58.744 37.500 0.00 0.00 29.78 2.57
3463 3779 8.952278 AGATTGATCTATTTAGACTACTAGCGG 58.048 37.037 0.00 0.00 34.85 5.52
3464 3780 8.638629 ATTGATCTATTTAGACTACTAGCGGT 57.361 34.615 0.00 0.00 34.72 5.68
3465 3781 8.461249 TTGATCTATTTAGACTACTAGCGGTT 57.539 34.615 0.00 0.00 34.72 4.44
3466 3782 7.872881 TGATCTATTTAGACTACTAGCGGTTG 58.127 38.462 0.00 0.00 34.72 3.77
3467 3783 6.630444 TCTATTTAGACTACTAGCGGTTGG 57.370 41.667 0.00 0.00 0.00 3.77
3468 3784 4.667519 ATTTAGACTACTAGCGGTTGGG 57.332 45.455 0.00 0.00 0.00 4.12
3469 3785 2.062971 TAGACTACTAGCGGTTGGGG 57.937 55.000 0.00 0.00 0.00 4.96
3470 3786 1.143401 GACTACTAGCGGTTGGGGC 59.857 63.158 0.00 0.00 0.00 5.80
3471 3787 2.106332 CTACTAGCGGTTGGGGCG 59.894 66.667 0.00 0.00 35.00 6.13
3472 3788 4.151582 TACTAGCGGTTGGGGCGC 62.152 66.667 0.00 0.00 35.00 6.53
3490 3806 2.033448 CACCTGGTGGCGCCTTTA 59.967 61.111 29.70 12.40 38.35 1.85
3491 3807 1.378514 CACCTGGTGGCGCCTTTAT 60.379 57.895 29.70 5.25 38.35 1.40
3492 3808 1.378514 ACCTGGTGGCGCCTTTATG 60.379 57.895 29.70 15.68 38.35 1.90
3493 3809 1.077787 CCTGGTGGCGCCTTTATGA 60.078 57.895 29.70 1.94 38.35 2.15
3494 3810 1.097547 CCTGGTGGCGCCTTTATGAG 61.098 60.000 29.70 13.91 38.35 2.90
3495 3811 1.718757 CTGGTGGCGCCTTTATGAGC 61.719 60.000 29.70 16.28 38.35 4.26
3505 3821 3.826466 GCCTTTATGAGCGGAATTATGC 58.174 45.455 0.00 0.00 0.00 3.14
3506 3822 3.667960 GCCTTTATGAGCGGAATTATGCG 60.668 47.826 0.00 0.00 44.03 4.73
3517 3833 5.441700 CGGAATTATGCGCACTAATCTAG 57.558 43.478 14.90 8.87 32.30 2.43
3518 3834 4.201628 CGGAATTATGCGCACTAATCTAGC 60.202 45.833 14.90 8.59 32.30 3.42
3519 3835 4.932200 GGAATTATGCGCACTAATCTAGCT 59.068 41.667 14.90 3.12 0.00 3.32
3520 3836 5.163913 GGAATTATGCGCACTAATCTAGCTG 60.164 44.000 14.90 0.00 0.00 4.24
3521 3837 2.898729 ATGCGCACTAATCTAGCTGT 57.101 45.000 14.90 0.00 0.00 4.40
3522 3838 2.209838 TGCGCACTAATCTAGCTGTC 57.790 50.000 5.66 0.00 0.00 3.51
3523 3839 1.124462 GCGCACTAATCTAGCTGTCG 58.876 55.000 0.30 0.00 0.00 4.35
3524 3840 1.534175 GCGCACTAATCTAGCTGTCGT 60.534 52.381 0.30 0.00 0.00 4.34
3525 3841 2.286831 GCGCACTAATCTAGCTGTCGTA 60.287 50.000 0.30 0.00 0.00 3.43
3526 3842 3.609644 GCGCACTAATCTAGCTGTCGTAT 60.610 47.826 0.30 0.00 0.00 3.06
3527 3843 4.537965 CGCACTAATCTAGCTGTCGTATT 58.462 43.478 0.00 0.00 0.00 1.89
3528 3844 4.976731 CGCACTAATCTAGCTGTCGTATTT 59.023 41.667 0.00 0.00 0.00 1.40
3529 3845 5.108217 CGCACTAATCTAGCTGTCGTATTTG 60.108 44.000 0.00 0.00 0.00 2.32
3530 3846 5.332656 GCACTAATCTAGCTGTCGTATTTGC 60.333 44.000 0.00 0.00 0.00 3.68
3531 3847 5.980116 CACTAATCTAGCTGTCGTATTTGCT 59.020 40.000 0.00 0.00 39.30 3.91
3532 3848 7.139392 CACTAATCTAGCTGTCGTATTTGCTA 58.861 38.462 0.00 0.00 37.02 3.49
3533 3849 7.648112 CACTAATCTAGCTGTCGTATTTGCTAA 59.352 37.037 0.00 0.00 37.53 3.09
3534 3850 6.830114 AATCTAGCTGTCGTATTTGCTAAC 57.170 37.500 0.00 0.00 37.53 2.34
3535 3851 5.319140 TCTAGCTGTCGTATTTGCTAACA 57.681 39.130 0.00 0.00 37.53 2.41
3536 3852 5.902681 TCTAGCTGTCGTATTTGCTAACAT 58.097 37.500 0.00 0.00 37.53 2.71
3537 3853 4.864916 AGCTGTCGTATTTGCTAACATG 57.135 40.909 0.00 0.00 33.64 3.21
3538 3854 4.253685 AGCTGTCGTATTTGCTAACATGT 58.746 39.130 0.00 0.00 33.64 3.21
3539 3855 4.093408 AGCTGTCGTATTTGCTAACATGTG 59.907 41.667 0.00 0.00 33.64 3.21
3540 3856 4.142902 GCTGTCGTATTTGCTAACATGTGT 60.143 41.667 0.00 0.00 0.00 3.72
3541 3857 5.276240 TGTCGTATTTGCTAACATGTGTG 57.724 39.130 0.00 0.00 0.00 3.82
3542 3858 4.752604 TGTCGTATTTGCTAACATGTGTGT 59.247 37.500 0.00 0.00 41.28 3.72
3543 3859 5.079406 GTCGTATTTGCTAACATGTGTGTG 58.921 41.667 0.00 0.00 38.92 3.82
3544 3860 4.752604 TCGTATTTGCTAACATGTGTGTGT 59.247 37.500 0.00 0.00 38.92 3.72
3545 3861 4.845598 CGTATTTGCTAACATGTGTGTGTG 59.154 41.667 0.00 0.00 38.92 3.82
3546 3862 3.706802 TTTGCTAACATGTGTGTGTGG 57.293 42.857 0.00 0.00 38.92 4.17
3547 3863 2.340210 TGCTAACATGTGTGTGTGGT 57.660 45.000 0.00 0.00 38.92 4.16
3548 3864 3.477210 TGCTAACATGTGTGTGTGGTA 57.523 42.857 0.00 0.00 38.92 3.25
3549 3865 4.014569 TGCTAACATGTGTGTGTGGTAT 57.985 40.909 0.00 0.00 38.92 2.73
3550 3866 4.393834 TGCTAACATGTGTGTGTGGTATT 58.606 39.130 0.00 0.00 38.92 1.89
3551 3867 4.824537 TGCTAACATGTGTGTGTGGTATTT 59.175 37.500 0.00 0.00 38.92 1.40
3552 3868 5.153513 GCTAACATGTGTGTGTGGTATTTG 58.846 41.667 0.00 0.00 38.92 2.32
3553 3869 5.278266 GCTAACATGTGTGTGTGGTATTTGT 60.278 40.000 0.00 0.00 38.92 2.83
3554 3870 4.829064 ACATGTGTGTGTGGTATTTGTC 57.171 40.909 0.00 0.00 37.14 3.18
3555 3871 4.203226 ACATGTGTGTGTGGTATTTGTCA 58.797 39.130 0.00 0.00 37.14 3.58
3556 3872 4.642437 ACATGTGTGTGTGGTATTTGTCAA 59.358 37.500 0.00 0.00 37.14 3.18
3557 3873 4.624336 TGTGTGTGTGGTATTTGTCAAC 57.376 40.909 0.00 0.00 0.00 3.18
3558 3874 3.064134 TGTGTGTGTGGTATTTGTCAACG 59.936 43.478 0.00 0.00 0.00 4.10
3559 3875 3.064271 GTGTGTGTGGTATTTGTCAACGT 59.936 43.478 0.00 0.00 0.00 3.99
3560 3876 3.064134 TGTGTGTGGTATTTGTCAACGTG 59.936 43.478 0.00 0.00 0.00 4.49
3561 3877 3.064271 GTGTGTGGTATTTGTCAACGTGT 59.936 43.478 0.00 0.00 0.00 4.49
3562 3878 3.690139 TGTGTGGTATTTGTCAACGTGTT 59.310 39.130 0.00 0.00 0.00 3.32
3563 3879 4.032355 GTGTGGTATTTGTCAACGTGTTG 58.968 43.478 6.39 6.39 41.71 3.33
3564 3880 3.040099 GTGGTATTTGTCAACGTGTTGC 58.960 45.455 7.85 4.41 40.24 4.17
3574 3890 3.305623 CGTGTTGCGTGACTTCGT 58.694 55.556 0.00 0.00 35.54 3.85
3575 3891 2.497804 CGTGTTGCGTGACTTCGTA 58.502 52.632 0.00 0.00 35.54 3.43
3576 3892 0.158096 CGTGTTGCGTGACTTCGTAC 59.842 55.000 0.00 0.00 35.54 3.67
3577 3893 1.484356 GTGTTGCGTGACTTCGTACT 58.516 50.000 0.00 0.00 0.00 2.73
3578 3894 2.653890 GTGTTGCGTGACTTCGTACTA 58.346 47.619 0.00 0.00 0.00 1.82
3579 3895 3.044986 GTGTTGCGTGACTTCGTACTAA 58.955 45.455 0.00 0.00 0.00 2.24
3580 3896 3.671928 GTGTTGCGTGACTTCGTACTAAT 59.328 43.478 0.00 0.00 0.00 1.73
3581 3897 4.853196 GTGTTGCGTGACTTCGTACTAATA 59.147 41.667 0.00 0.00 0.00 0.98
3582 3898 5.514204 GTGTTGCGTGACTTCGTACTAATAT 59.486 40.000 0.00 0.00 0.00 1.28
3583 3899 6.034256 GTGTTGCGTGACTTCGTACTAATATT 59.966 38.462 0.00 0.00 0.00 1.28
3584 3900 6.034150 TGTTGCGTGACTTCGTACTAATATTG 59.966 38.462 0.00 0.00 0.00 1.90
3585 3901 4.501559 TGCGTGACTTCGTACTAATATTGC 59.498 41.667 0.00 0.00 0.00 3.56
3586 3902 4.738740 GCGTGACTTCGTACTAATATTGCT 59.261 41.667 0.00 0.00 0.00 3.91
3587 3903 5.331607 GCGTGACTTCGTACTAATATTGCTG 60.332 44.000 0.00 0.00 0.00 4.41
3588 3904 5.173312 CGTGACTTCGTACTAATATTGCTGG 59.827 44.000 0.00 0.00 0.00 4.85
3589 3905 6.040878 GTGACTTCGTACTAATATTGCTGGT 58.959 40.000 0.00 0.00 0.00 4.00
3590 3906 6.019801 GTGACTTCGTACTAATATTGCTGGTG 60.020 42.308 0.00 0.00 0.00 4.17
3591 3907 4.809426 ACTTCGTACTAATATTGCTGGTGC 59.191 41.667 0.00 0.00 40.20 5.01
3602 3918 0.240678 TGCTGGTGCATTTGCTAACG 59.759 50.000 3.94 0.00 45.31 3.18
3603 3919 0.240945 GCTGGTGCATTTGCTAACGT 59.759 50.000 3.94 0.00 42.66 3.99
3604 3920 1.729149 GCTGGTGCATTTGCTAACGTC 60.729 52.381 3.94 0.00 42.66 4.34
3605 3921 0.515127 TGGTGCATTTGCTAACGTCG 59.485 50.000 3.94 0.00 42.66 5.12
3606 3922 0.179200 GGTGCATTTGCTAACGTCGG 60.179 55.000 3.94 0.00 42.66 4.79
3607 3923 0.515564 GTGCATTTGCTAACGTCGGT 59.484 50.000 3.94 0.00 42.66 4.69
3608 3924 1.727880 GTGCATTTGCTAACGTCGGTA 59.272 47.619 3.94 0.00 42.66 4.02
3609 3925 2.350498 GTGCATTTGCTAACGTCGGTAT 59.650 45.455 3.94 0.00 42.66 2.73
3610 3926 2.350192 TGCATTTGCTAACGTCGGTATG 59.650 45.455 3.94 0.00 42.66 2.39
3611 3927 2.350498 GCATTTGCTAACGTCGGTATGT 59.650 45.455 0.00 0.00 38.21 2.29
3612 3928 3.552699 GCATTTGCTAACGTCGGTATGTA 59.447 43.478 0.00 0.00 38.21 2.29
3613 3929 4.317839 GCATTTGCTAACGTCGGTATGTAG 60.318 45.833 0.00 0.00 38.21 2.74
3614 3930 4.439305 TTTGCTAACGTCGGTATGTAGT 57.561 40.909 0.00 0.00 0.00 2.73
3615 3931 3.680642 TGCTAACGTCGGTATGTAGTC 57.319 47.619 0.00 0.00 0.00 2.59
3616 3932 2.355756 TGCTAACGTCGGTATGTAGTCC 59.644 50.000 0.00 0.00 0.00 3.85
3617 3933 2.355756 GCTAACGTCGGTATGTAGTCCA 59.644 50.000 0.00 0.00 0.00 4.02
3618 3934 3.181497 GCTAACGTCGGTATGTAGTCCAA 60.181 47.826 0.00 0.00 0.00 3.53
3619 3935 3.940209 AACGTCGGTATGTAGTCCAAA 57.060 42.857 0.00 0.00 0.00 3.28
3620 3936 4.460948 AACGTCGGTATGTAGTCCAAAT 57.539 40.909 0.00 0.00 0.00 2.32
3621 3937 3.777478 ACGTCGGTATGTAGTCCAAATG 58.223 45.455 0.00 0.00 0.00 2.32
3622 3938 3.444742 ACGTCGGTATGTAGTCCAAATGA 59.555 43.478 0.00 0.00 0.00 2.57
3623 3939 4.042398 CGTCGGTATGTAGTCCAAATGAG 58.958 47.826 0.00 0.00 0.00 2.90
3624 3940 4.369182 GTCGGTATGTAGTCCAAATGAGG 58.631 47.826 0.00 0.00 0.00 3.86
3625 3941 4.098960 GTCGGTATGTAGTCCAAATGAGGA 59.901 45.833 0.00 0.00 34.64 3.71
3626 3942 4.899457 TCGGTATGTAGTCCAAATGAGGAT 59.101 41.667 0.00 0.00 40.42 3.24
3627 3943 5.010719 TCGGTATGTAGTCCAAATGAGGATC 59.989 44.000 0.00 0.00 40.42 3.36
3628 3944 5.230942 GGTATGTAGTCCAAATGAGGATCG 58.769 45.833 0.00 0.00 40.42 3.69
3629 3945 3.819564 TGTAGTCCAAATGAGGATCGG 57.180 47.619 0.00 0.00 40.42 4.18
3630 3946 3.104512 TGTAGTCCAAATGAGGATCGGT 58.895 45.455 0.00 0.00 40.42 4.69
3631 3947 3.517901 TGTAGTCCAAATGAGGATCGGTT 59.482 43.478 0.00 0.00 40.42 4.44
3632 3948 2.991250 AGTCCAAATGAGGATCGGTTG 58.009 47.619 0.00 0.00 40.42 3.77
3633 3949 2.305927 AGTCCAAATGAGGATCGGTTGT 59.694 45.455 0.00 0.00 40.42 3.32
3634 3950 3.081804 GTCCAAATGAGGATCGGTTGTT 58.918 45.455 0.00 0.00 40.42 2.83
3635 3951 4.019681 AGTCCAAATGAGGATCGGTTGTTA 60.020 41.667 0.00 0.00 40.42 2.41
3636 3952 4.698304 GTCCAAATGAGGATCGGTTGTTAA 59.302 41.667 0.00 0.00 40.42 2.01
3637 3953 5.182380 GTCCAAATGAGGATCGGTTGTTAAA 59.818 40.000 0.00 0.00 40.42 1.52
3638 3954 5.182380 TCCAAATGAGGATCGGTTGTTAAAC 59.818 40.000 0.00 0.00 38.61 2.01
3639 3955 7.742294 TCCAAATGAGGATCGGTTGTTAAACC 61.742 42.308 0.00 0.00 41.76 3.27
3652 3968 6.704512 GTTGTTAAACCAAAGCATACATGG 57.295 37.500 0.00 0.00 40.16 3.66
3653 3969 6.451393 GTTGTTAAACCAAAGCATACATGGA 58.549 36.000 0.00 0.00 37.66 3.41
3654 3970 6.656632 TGTTAAACCAAAGCATACATGGAA 57.343 33.333 0.00 0.00 37.66 3.53
3655 3971 7.238486 TGTTAAACCAAAGCATACATGGAAT 57.762 32.000 0.00 0.00 37.66 3.01
3656 3972 8.354711 TGTTAAACCAAAGCATACATGGAATA 57.645 30.769 0.00 0.00 37.66 1.75
3657 3973 8.465999 TGTTAAACCAAAGCATACATGGAATAG 58.534 33.333 0.00 0.00 37.66 1.73
3658 3974 8.682710 GTTAAACCAAAGCATACATGGAATAGA 58.317 33.333 0.00 0.00 37.66 1.98
3659 3975 7.716799 AAACCAAAGCATACATGGAATAGAA 57.283 32.000 0.00 0.00 37.66 2.10
3660 3976 6.699575 ACCAAAGCATACATGGAATAGAAC 57.300 37.500 0.00 0.00 37.66 3.01
3661 3977 6.426587 ACCAAAGCATACATGGAATAGAACT 58.573 36.000 0.00 0.00 37.66 3.01
3662 3978 6.319658 ACCAAAGCATACATGGAATAGAACTG 59.680 38.462 0.00 0.00 37.66 3.16
3663 3979 6.204359 CAAAGCATACATGGAATAGAACTGC 58.796 40.000 0.00 0.00 0.00 4.40
3664 3980 5.039920 AGCATACATGGAATAGAACTGCA 57.960 39.130 0.00 0.00 0.00 4.41
3665 3981 5.061853 AGCATACATGGAATAGAACTGCAG 58.938 41.667 13.48 13.48 0.00 4.41
3666 3982 4.818546 GCATACATGGAATAGAACTGCAGT 59.181 41.667 15.25 15.25 0.00 4.40
3667 3983 5.049818 GCATACATGGAATAGAACTGCAGTC 60.050 44.000 21.95 13.62 0.00 3.51
3668 3984 3.525537 ACATGGAATAGAACTGCAGTCG 58.474 45.455 21.95 0.00 0.00 4.18
3669 3985 2.010145 TGGAATAGAACTGCAGTCGC 57.990 50.000 21.95 15.42 39.24 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.891671 TTTTTCATTGCTAGATGAAGCTTTTT 57.108 26.923 0.00 0.00 44.33 1.94
36 37 4.436183 GCTTTCGTCTCTATGCTTGAAACC 60.436 45.833 0.00 0.00 0.00 3.27
44 45 1.869767 CCATGGCTTTCGTCTCTATGC 59.130 52.381 0.00 0.00 0.00 3.14
46 47 2.223829 CGTCCATGGCTTTCGTCTCTAT 60.224 50.000 6.96 0.00 0.00 1.98
59 60 0.109781 CTTTTCGTTGCCGTCCATGG 60.110 55.000 4.97 4.97 35.01 3.66
64 65 1.725973 GCAGCTTTTCGTTGCCGTC 60.726 57.895 0.00 0.00 43.22 4.79
65 66 2.331451 GCAGCTTTTCGTTGCCGT 59.669 55.556 0.00 0.00 43.22 5.68
69 70 0.934436 CCGGTTGCAGCTTTTCGTTG 60.934 55.000 0.00 0.00 0.00 4.10
72 73 2.187599 CTCCCGGTTGCAGCTTTTCG 62.188 60.000 0.00 0.00 0.00 3.46
73 74 1.172812 ACTCCCGGTTGCAGCTTTTC 61.173 55.000 0.00 0.00 0.00 2.29
74 75 0.755327 AACTCCCGGTTGCAGCTTTT 60.755 50.000 0.00 0.00 36.70 2.27
75 76 0.109723 TAACTCCCGGTTGCAGCTTT 59.890 50.000 0.00 0.00 38.75 3.51
76 77 0.605589 GTAACTCCCGGTTGCAGCTT 60.606 55.000 0.00 0.00 39.71 3.74
77 78 1.003718 GTAACTCCCGGTTGCAGCT 60.004 57.895 0.00 0.00 39.71 4.24
78 79 1.302192 TGTAACTCCCGGTTGCAGC 60.302 57.895 0.00 0.00 43.57 5.25
80 81 1.950909 CTTTTGTAACTCCCGGTTGCA 59.049 47.619 0.00 0.00 45.95 4.08
81 82 1.335597 GCTTTTGTAACTCCCGGTTGC 60.336 52.381 0.00 0.00 40.23 4.17
82 83 2.031157 CAGCTTTTGTAACTCCCGGTTG 60.031 50.000 0.00 0.00 38.75 3.77
84 85 1.544759 CCAGCTTTTGTAACTCCCGGT 60.545 52.381 0.00 0.00 0.00 5.28
85 86 1.165270 CCAGCTTTTGTAACTCCCGG 58.835 55.000 0.00 0.00 0.00 5.73
86 87 2.178912 TCCAGCTTTTGTAACTCCCG 57.821 50.000 0.00 0.00 0.00 5.14
87 88 2.557056 GGTTCCAGCTTTTGTAACTCCC 59.443 50.000 0.00 0.00 0.00 4.30
88 89 2.225727 CGGTTCCAGCTTTTGTAACTCC 59.774 50.000 0.00 0.00 0.00 3.85
89 90 2.225727 CCGGTTCCAGCTTTTGTAACTC 59.774 50.000 0.00 0.00 0.00 3.01
131 132 2.366590 TGGATCGCAGCTAAGACATGAT 59.633 45.455 0.00 0.00 0.00 2.45
149 150 1.164411 GTTGTCATCGTTGCCATGGA 58.836 50.000 18.40 0.00 0.00 3.41
150 151 0.179192 CGTTGTCATCGTTGCCATGG 60.179 55.000 7.63 7.63 0.00 3.66
151 152 0.516877 ACGTTGTCATCGTTGCCATG 59.483 50.000 3.09 0.00 38.38 3.66
152 153 2.927004 ACGTTGTCATCGTTGCCAT 58.073 47.368 3.09 0.00 38.38 4.40
153 154 4.447544 ACGTTGTCATCGTTGCCA 57.552 50.000 3.09 0.00 38.38 4.92
168 175 2.226437 AGACTATGGTTGCAGCAAAACG 59.774 45.455 10.11 0.00 0.00 3.60
189 196 1.937278 TCGTCGGTTGTAGCAAAACA 58.063 45.000 0.00 0.00 0.00 2.83
204 212 8.460831 AATGGTTTGTAGCAAATTTTATCGTC 57.539 30.769 0.00 0.00 35.04 4.20
205 213 8.825667 AAATGGTTTGTAGCAAATTTTATCGT 57.174 26.923 0.00 0.00 35.04 3.73
210 218 8.351461 CCATGAAAATGGTTTGTAGCAAATTTT 58.649 29.630 0.00 1.91 36.95 1.82
211 219 7.521910 GCCATGAAAATGGTTTGTAGCAAATTT 60.522 33.333 6.61 0.00 43.53 1.82
222 230 4.895668 ATGACAGCCATGAAAATGGTTT 57.104 36.364 6.61 0.00 43.53 3.27
240 248 1.522668 GCACACTTGTAGCACCATGA 58.477 50.000 0.00 0.00 0.00 3.07
257 265 3.683587 CTCGTCGTGCTCATCGGCA 62.684 63.158 0.00 0.00 40.15 5.69
263 271 1.469767 CCATCAATCTCGTCGTGCTCA 60.470 52.381 0.00 0.00 0.00 4.26
272 280 0.546122 TTCCACCCCCATCAATCTCG 59.454 55.000 0.00 0.00 0.00 4.04
276 284 2.469952 CAACATTCCACCCCCATCAAT 58.530 47.619 0.00 0.00 0.00 2.57
277 285 1.935799 CAACATTCCACCCCCATCAA 58.064 50.000 0.00 0.00 0.00 2.57
282 290 1.605165 TTCGCAACATTCCACCCCC 60.605 57.895 0.00 0.00 0.00 5.40
290 298 1.477700 CCATCCATGGTTCGCAACATT 59.522 47.619 12.58 0.00 43.05 2.71
308 316 2.265739 GCACACCAGATCTCGCCA 59.734 61.111 0.00 0.00 0.00 5.69
330 338 2.282180 AACACCGTGCCACCCATC 60.282 61.111 0.00 0.00 0.00 3.51
334 342 2.362329 AATTGCAACACCGTGCCACC 62.362 55.000 0.00 0.00 44.26 4.61
344 352 0.893270 CCCTCGTCCCAATTGCAACA 60.893 55.000 0.00 0.00 0.00 3.33
414 427 0.534652 CTCCCCGAGGTAGTAGGTCG 60.535 65.000 0.00 0.00 0.00 4.79
417 430 4.925311 CCTCCCCGAGGTAGTAGG 57.075 66.667 0.00 0.00 44.25 3.18
436 449 3.136123 CAACATCCTGCCCTGCCG 61.136 66.667 0.00 0.00 0.00 5.69
469 482 3.918253 TTCAGCACCCCGACATGGC 62.918 63.158 0.00 0.00 35.87 4.40
470 483 1.303236 TTTCAGCACCCCGACATGG 60.303 57.895 0.00 0.00 37.55 3.66
471 484 1.586154 GGTTTCAGCACCCCGACATG 61.586 60.000 0.00 0.00 0.00 3.21
472 485 1.303317 GGTTTCAGCACCCCGACAT 60.303 57.895 0.00 0.00 0.00 3.06
473 486 2.112297 GGTTTCAGCACCCCGACA 59.888 61.111 0.00 0.00 0.00 4.35
474 487 3.047877 CGGTTTCAGCACCCCGAC 61.048 66.667 0.00 0.00 43.01 4.79
501 514 2.461110 GGGCTTGCCGTGTGTATCG 61.461 63.158 5.49 0.00 0.00 2.92
502 515 1.376683 TGGGCTTGCCGTGTGTATC 60.377 57.895 5.49 0.00 0.00 2.24
503 516 1.674322 GTGGGCTTGCCGTGTGTAT 60.674 57.895 5.49 0.00 0.00 2.29
504 517 2.281208 GTGGGCTTGCCGTGTGTA 60.281 61.111 5.49 0.00 0.00 2.90
514 527 3.454587 TTGTGCTCGTCGTGGGCTT 62.455 57.895 4.07 0.00 0.00 4.35
519 532 1.484227 TTTCGGTTGTGCTCGTCGTG 61.484 55.000 0.00 0.00 0.00 4.35
520 533 1.213094 CTTTCGGTTGTGCTCGTCGT 61.213 55.000 0.00 0.00 0.00 4.34
526 539 2.115266 CCCCCTTTCGGTTGTGCT 59.885 61.111 0.00 0.00 0.00 4.40
551 567 2.709213 GAGAGCAATGACTTTGAGCCT 58.291 47.619 5.31 0.00 37.53 4.58
567 583 0.595588 ACACACACAGAGAGCGAGAG 59.404 55.000 0.00 0.00 0.00 3.20
569 585 0.031314 ACACACACACAGAGAGCGAG 59.969 55.000 0.00 0.00 0.00 5.03
571 587 1.004610 CAAACACACACACAGAGAGCG 60.005 52.381 0.00 0.00 0.00 5.03
573 589 2.609459 GTCCAAACACACACACAGAGAG 59.391 50.000 0.00 0.00 0.00 3.20
575 591 1.327460 CGTCCAAACACACACACAGAG 59.673 52.381 0.00 0.00 0.00 3.35
577 593 1.364721 TCGTCCAAACACACACACAG 58.635 50.000 0.00 0.00 0.00 3.66
587 604 0.249996 TCCCGTTCCTTCGTCCAAAC 60.250 55.000 0.00 0.00 0.00 2.93
615 632 0.109365 CTCTCTATCATGCTCCCGCG 60.109 60.000 0.00 0.00 39.65 6.46
618 635 1.550072 GAGCCTCTCTATCATGCTCCC 59.450 57.143 0.00 0.00 41.95 4.30
625 642 2.420058 TCGTGTGAGCCTCTCTATCA 57.580 50.000 0.00 0.00 0.00 2.15
672 695 2.983592 CGGCCCAAACTTTCGGCT 60.984 61.111 9.68 0.00 42.58 5.52
699 722 2.168496 ACTTTAGTCGAGTGCTAGGCA 58.832 47.619 2.10 0.00 35.60 4.75
712 735 4.777896 TCTCTGCCCATACAGAACTTTAGT 59.222 41.667 0.00 0.00 45.72 2.24
741 764 4.451150 GCGTGCTCATCCCGGTCA 62.451 66.667 0.00 0.00 0.00 4.02
746 769 3.781770 CTCCTCGCGTGCTCATCCC 62.782 68.421 5.77 0.00 0.00 3.85
754 777 0.027194 CAATGAATGCTCCTCGCGTG 59.973 55.000 5.77 2.75 43.27 5.34
771 794 2.592993 CGCTTCCCCTCCTCACCAA 61.593 63.158 0.00 0.00 0.00 3.67
790 813 0.106149 GATTCCGCCATCCCTACGTT 59.894 55.000 0.00 0.00 0.00 3.99
800 825 1.203237 TCATCCTCAAGATTCCGCCA 58.797 50.000 0.00 0.00 30.59 5.69
829 854 7.810766 TTTATTTTATTTCTTTGCCTGCGAG 57.189 32.000 0.00 0.00 0.00 5.03
842 867 9.649024 GCATGCGCATGTATTTTTATTTTATTT 57.351 25.926 41.40 6.60 40.80 1.40
843 868 8.003224 CGCATGCGCATGTATTTTTATTTTATT 58.997 29.630 41.40 6.94 40.80 1.40
844 869 7.500691 CGCATGCGCATGTATTTTTATTTTAT 58.499 30.769 41.40 7.31 40.80 1.40
845 870 6.861158 CGCATGCGCATGTATTTTTATTTTA 58.139 32.000 41.40 3.26 40.80 1.52
846 871 5.726245 CGCATGCGCATGTATTTTTATTTT 58.274 33.333 41.40 8.42 40.80 1.82
847 872 5.313749 CGCATGCGCATGTATTTTTATTT 57.686 34.783 41.40 8.89 40.80 1.40
848 873 4.952445 CGCATGCGCATGTATTTTTATT 57.048 36.364 41.40 9.11 40.80 1.40
925 981 7.518188 TCAACTTCTTACCTCTGAGGATTTTT 58.482 34.615 29.71 9.77 37.67 1.94
926 982 7.079451 TCAACTTCTTACCTCTGAGGATTTT 57.921 36.000 29.71 10.15 37.67 1.82
927 983 6.688073 TCAACTTCTTACCTCTGAGGATTT 57.312 37.500 29.71 10.53 37.67 2.17
928 984 6.688073 TTCAACTTCTTACCTCTGAGGATT 57.312 37.500 29.71 11.28 37.67 3.01
932 988 3.923461 CGCTTCAACTTCTTACCTCTGAG 59.077 47.826 0.00 0.00 0.00 3.35
998 1055 6.379417 GTGGACGTAGGGCTATATTTATAGGT 59.621 42.308 6.72 0.00 36.90 3.08
1131 1228 2.930040 CGTGCGTACCATCAAAGAAGAT 59.070 45.455 0.00 0.00 0.00 2.40
1315 1439 4.609018 ACGCGAGCACCTGCAACT 62.609 61.111 15.93 0.00 45.16 3.16
1439 1563 1.225745 GGCGCGATGTCTTTTCACG 60.226 57.895 12.10 0.00 0.00 4.35
1489 1613 4.466370 ACAGGAGACGTGGAATAATGAGAA 59.534 41.667 0.00 0.00 0.00 2.87
1519 1643 1.272490 CTGTAGTTGGAGAAGCGTCCA 59.728 52.381 0.00 0.00 45.37 4.02
1650 1827 0.324943 GCTGCAAGGACAAGGGAGTA 59.675 55.000 0.00 0.00 0.00 2.59
1651 1828 1.073897 GCTGCAAGGACAAGGGAGT 59.926 57.895 0.00 0.00 0.00 3.85
1654 1831 1.962144 CTTGCTGCAAGGACAAGGG 59.038 57.895 29.91 7.01 37.77 3.95
1809 1989 4.640201 CCTCTTGAAAGTTTGAACCTGTGA 59.360 41.667 0.00 0.00 0.00 3.58
2025 2208 6.293135 GCATGCAGGAGAAGTTAATTAGTAGC 60.293 42.308 14.21 0.00 0.00 3.58
2026 2209 6.763135 TGCATGCAGGAGAAGTTAATTAGTAG 59.237 38.462 18.46 0.00 0.00 2.57
2027 2210 6.649155 TGCATGCAGGAGAAGTTAATTAGTA 58.351 36.000 18.46 0.00 0.00 1.82
2067 2250 1.300620 CTCAGTCGCCACGTTTCCA 60.301 57.895 0.00 0.00 0.00 3.53
2299 2482 6.404403 GCATGATTGATGATGTCAGTGAAAGT 60.404 38.462 0.00 0.00 38.29 2.66
2366 2551 9.775854 ATCAAATTCATACATTAGAGACCAGAG 57.224 33.333 0.00 0.00 0.00 3.35
2400 2588 5.003692 TGCACAAAAACAACTCTGCATAA 57.996 34.783 0.00 0.00 29.85 1.90
2407 2595 2.540931 CCTGCATGCACAAAAACAACTC 59.459 45.455 18.46 0.00 0.00 3.01
2409 2597 2.030701 CACCTGCATGCACAAAAACAAC 59.969 45.455 18.46 0.00 0.00 3.32
2447 2644 4.606961 TCAGTTTGCCGTTGAAATTCTTC 58.393 39.130 0.00 0.00 0.00 2.87
2470 2667 1.533469 GGTACTCTCACAGCACGGGT 61.533 60.000 0.00 0.00 0.00 5.28
2480 2677 4.060192 ACCCTCCCTTATAGGTACTCTCA 58.940 47.826 0.00 0.00 41.75 3.27
2591 2788 1.377725 CTCCCACCCAGCATGTGTC 60.378 63.158 0.00 0.00 31.71 3.67
2636 2833 5.353678 GTCCTCATCAAGAAACTCCATCAAG 59.646 44.000 0.00 0.00 0.00 3.02
2749 2947 9.826574 TCTACCTAAACACGCTATTGATAAAAT 57.173 29.630 0.00 0.00 0.00 1.82
2750 2948 9.656040 TTCTACCTAAACACGCTATTGATAAAA 57.344 29.630 0.00 0.00 0.00 1.52
2756 2954 5.416947 ACCTTCTACCTAAACACGCTATTG 58.583 41.667 0.00 0.00 0.00 1.90
2772 2974 4.466827 GGGGAAAAACTCACAACCTTCTA 58.533 43.478 0.00 0.00 0.00 2.10
2791 2993 0.321346 GCCATCAAAACACAAGGGGG 59.679 55.000 0.00 0.00 0.00 5.40
2833 3035 9.051679 CCCGTTCATGTCTCATTACATAATAAA 57.948 33.333 0.00 0.00 38.01 1.40
2834 3036 8.208224 ACCCGTTCATGTCTCATTACATAATAA 58.792 33.333 0.00 0.00 38.01 1.40
2835 3037 7.655732 CACCCGTTCATGTCTCATTACATAATA 59.344 37.037 0.00 0.00 38.01 0.98
2836 3038 6.483307 CACCCGTTCATGTCTCATTACATAAT 59.517 38.462 0.00 0.00 38.01 1.28
2894 3120 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2895 3121 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2896 3122 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2897 3123 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2898 3124 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2899 3125 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2900 3126 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2901 3127 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2902 3128 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2916 3142 8.739972 GGCCATTTAAAATCTCTAGAAAGACAA 58.260 33.333 0.00 0.00 0.00 3.18
2917 3143 7.888021 TGGCCATTTAAAATCTCTAGAAAGACA 59.112 33.333 0.00 0.00 0.00 3.41
2918 3144 8.184848 GTGGCCATTTAAAATCTCTAGAAAGAC 58.815 37.037 9.72 0.00 0.00 3.01
2919 3145 7.339466 GGTGGCCATTTAAAATCTCTAGAAAGA 59.661 37.037 9.72 0.00 0.00 2.52
2920 3146 7.122650 TGGTGGCCATTTAAAATCTCTAGAAAG 59.877 37.037 9.72 0.00 0.00 2.62
2921 3147 6.951198 TGGTGGCCATTTAAAATCTCTAGAAA 59.049 34.615 9.72 0.00 0.00 2.52
2922 3148 6.377146 GTGGTGGCCATTTAAAATCTCTAGAA 59.623 38.462 9.72 0.00 35.28 2.10
2923 3149 5.885912 GTGGTGGCCATTTAAAATCTCTAGA 59.114 40.000 9.72 0.00 35.28 2.43
2924 3150 5.652014 TGTGGTGGCCATTTAAAATCTCTAG 59.348 40.000 9.72 0.00 35.28 2.43
2925 3151 5.575157 TGTGGTGGCCATTTAAAATCTCTA 58.425 37.500 9.72 0.00 35.28 2.43
2926 3152 4.415596 TGTGGTGGCCATTTAAAATCTCT 58.584 39.130 9.72 0.00 35.28 3.10
2927 3153 4.799564 TGTGGTGGCCATTTAAAATCTC 57.200 40.909 9.72 0.00 35.28 2.75
2928 3154 5.163561 CGTATGTGGTGGCCATTTAAAATCT 60.164 40.000 9.72 0.00 35.28 2.40
2929 3155 5.040635 CGTATGTGGTGGCCATTTAAAATC 58.959 41.667 9.72 0.00 35.28 2.17
2930 3156 4.142049 CCGTATGTGGTGGCCATTTAAAAT 60.142 41.667 9.72 1.02 35.28 1.82
2931 3157 3.193691 CCGTATGTGGTGGCCATTTAAAA 59.806 43.478 9.72 0.00 35.28 1.52
2932 3158 2.755655 CCGTATGTGGTGGCCATTTAAA 59.244 45.455 9.72 0.00 35.28 1.52
2933 3159 2.026169 TCCGTATGTGGTGGCCATTTAA 60.026 45.455 9.72 0.00 35.28 1.52
2934 3160 1.560146 TCCGTATGTGGTGGCCATTTA 59.440 47.619 9.72 0.00 35.28 1.40
2935 3161 0.329931 TCCGTATGTGGTGGCCATTT 59.670 50.000 9.72 0.00 35.28 2.32
2936 3162 0.550914 ATCCGTATGTGGTGGCCATT 59.449 50.000 9.72 0.00 35.28 3.16
2937 3163 0.179020 CATCCGTATGTGGTGGCCAT 60.179 55.000 9.72 0.00 35.28 4.40
2938 3164 1.223211 CATCCGTATGTGGTGGCCA 59.777 57.895 0.00 0.00 0.00 5.36
2939 3165 0.466543 TACATCCGTATGTGGTGGCC 59.533 55.000 3.56 0.00 45.99 5.36
2940 3166 2.543777 ATACATCCGTATGTGGTGGC 57.456 50.000 3.56 0.00 45.99 5.01
2941 3167 6.152154 TGTCTATATACATCCGTATGTGGTGG 59.848 42.308 3.56 0.00 45.99 4.61
2942 3168 7.153217 TGTCTATATACATCCGTATGTGGTG 57.847 40.000 3.56 0.00 45.99 4.17
2943 3169 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2973 3199 8.515414 GGAGCAAAATGAGTAAATCTACACTTT 58.485 33.333 0.00 0.00 0.00 2.66
2974 3200 7.148407 CGGAGCAAAATGAGTAAATCTACACTT 60.148 37.037 0.00 0.00 0.00 3.16
2975 3201 6.313905 CGGAGCAAAATGAGTAAATCTACACT 59.686 38.462 0.00 0.00 0.00 3.55
2976 3202 6.092259 ACGGAGCAAAATGAGTAAATCTACAC 59.908 38.462 0.00 0.00 0.00 2.90
2977 3203 6.170506 ACGGAGCAAAATGAGTAAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
2978 3204 6.663944 ACGGAGCAAAATGAGTAAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
2979 3205 7.985184 ACATACGGAGCAAAATGAGTAAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
2980 3206 6.823689 ACATACGGAGCAAAATGAGTAAATCT 59.176 34.615 0.00 0.00 0.00 2.40
2981 3207 7.016361 ACATACGGAGCAAAATGAGTAAATC 57.984 36.000 0.00 0.00 0.00 2.17
2982 3208 7.769044 ACTACATACGGAGCAAAATGAGTAAAT 59.231 33.333 0.00 0.00 0.00 1.40
2983 3209 7.101054 ACTACATACGGAGCAAAATGAGTAAA 58.899 34.615 0.00 0.00 0.00 2.01
2984 3210 6.636705 ACTACATACGGAGCAAAATGAGTAA 58.363 36.000 0.00 0.00 0.00 2.24
2985 3211 6.127563 TGACTACATACGGAGCAAAATGAGTA 60.128 38.462 0.00 0.00 0.00 2.59
2986 3212 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2987 3213 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2988 3214 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2989 3215 4.034048 GGTGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
2990 3216 4.189231 GGTGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
2991 3217 3.007074 TGGTGACTACATACGGAGCAAAA 59.993 43.478 0.00 0.00 0.00 2.44
2992 3218 2.563620 TGGTGACTACATACGGAGCAAA 59.436 45.455 0.00 0.00 0.00 3.68
2993 3219 2.172679 TGGTGACTACATACGGAGCAA 58.827 47.619 0.00 0.00 0.00 3.91
2994 3220 1.842052 TGGTGACTACATACGGAGCA 58.158 50.000 0.00 0.00 0.00 4.26
2995 3221 3.454371 AATGGTGACTACATACGGAGC 57.546 47.619 0.00 0.00 0.00 4.70
2996 3222 5.006153 TCAAATGGTGACTACATACGGAG 57.994 43.478 0.00 0.00 0.00 4.63
2997 3223 5.408880 TTCAAATGGTGACTACATACGGA 57.591 39.130 0.00 0.00 35.39 4.69
2998 3224 5.163794 GGTTTCAAATGGTGACTACATACGG 60.164 44.000 0.00 0.00 35.39 4.02
2999 3225 5.642063 AGGTTTCAAATGGTGACTACATACG 59.358 40.000 0.00 0.00 35.39 3.06
3000 3226 6.879458 AGAGGTTTCAAATGGTGACTACATAC 59.121 38.462 0.00 0.00 35.39 2.39
3001 3227 7.016153 AGAGGTTTCAAATGGTGACTACATA 57.984 36.000 0.00 0.00 35.39 2.29
3002 3228 5.880901 AGAGGTTTCAAATGGTGACTACAT 58.119 37.500 0.00 0.00 35.39 2.29
3003 3229 5.304686 AGAGGTTTCAAATGGTGACTACA 57.695 39.130 0.00 0.00 35.39 2.74
3004 3230 6.698380 TCTAGAGGTTTCAAATGGTGACTAC 58.302 40.000 0.00 0.00 35.39 2.73
3005 3231 6.928348 TCTAGAGGTTTCAAATGGTGACTA 57.072 37.500 0.00 0.00 35.39 2.59
3006 3232 5.825593 TCTAGAGGTTTCAAATGGTGACT 57.174 39.130 0.00 0.00 35.39 3.41
3007 3233 6.710744 TCTTTCTAGAGGTTTCAAATGGTGAC 59.289 38.462 0.00 0.00 35.39 3.67
3008 3234 6.710744 GTCTTTCTAGAGGTTTCAAATGGTGA 59.289 38.462 0.00 0.00 0.00 4.02
3009 3235 6.486657 TGTCTTTCTAGAGGTTTCAAATGGTG 59.513 38.462 0.00 0.00 0.00 4.17
3010 3236 6.601332 TGTCTTTCTAGAGGTTTCAAATGGT 58.399 36.000 0.00 0.00 0.00 3.55
3011 3237 7.510549 TTGTCTTTCTAGAGGTTTCAAATGG 57.489 36.000 0.00 0.00 0.00 3.16
3023 3249 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3024 3250 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3025 3251 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3026 3252 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3027 3253 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3028 3254 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3029 3255 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3030 3256 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3031 3257 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3032 3258 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3033 3259 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3034 3260 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3035 3261 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3036 3262 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3037 3263 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3038 3264 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3039 3265 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3040 3266 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
3041 3267 2.309755 TCAACTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
3042 3268 1.076677 TCAACTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
3043 3269 1.553706 TCAACTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
3044 3270 5.068723 TCAATATCAACTACTCCCTCCGTTC 59.931 44.000 0.00 0.00 0.00 3.95
3045 3271 4.960469 TCAATATCAACTACTCCCTCCGTT 59.040 41.667 0.00 0.00 0.00 4.44
3046 3272 4.543689 TCAATATCAACTACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
3047 3273 5.531122 TTCAATATCAACTACTCCCTCCG 57.469 43.478 0.00 0.00 0.00 4.63
3048 3274 7.339482 ACTTTTCAATATCAACTACTCCCTCC 58.661 38.462 0.00 0.00 0.00 4.30
3049 3275 8.669243 CAACTTTTCAATATCAACTACTCCCTC 58.331 37.037 0.00 0.00 0.00 4.30
3050 3276 7.611855 CCAACTTTTCAATATCAACTACTCCCT 59.388 37.037 0.00 0.00 0.00 4.20
3051 3277 7.393515 ACCAACTTTTCAATATCAACTACTCCC 59.606 37.037 0.00 0.00 0.00 4.30
3052 3278 8.336801 ACCAACTTTTCAATATCAACTACTCC 57.663 34.615 0.00 0.00 0.00 3.85
3053 3279 8.169268 CGACCAACTTTTCAATATCAACTACTC 58.831 37.037 0.00 0.00 0.00 2.59
3054 3280 7.660208 ACGACCAACTTTTCAATATCAACTACT 59.340 33.333 0.00 0.00 0.00 2.57
3055 3281 7.803724 ACGACCAACTTTTCAATATCAACTAC 58.196 34.615 0.00 0.00 0.00 2.73
3078 3304 5.980116 GCTGCTAGATATTCACCCATATACG 59.020 44.000 0.00 0.00 0.00 3.06
3103 3331 7.415095 CCGATAAAACCAAGCACATTCTCATTA 60.415 37.037 0.00 0.00 0.00 1.90
3112 3340 3.499157 GTGTACCGATAAAACCAAGCACA 59.501 43.478 0.00 0.00 0.00 4.57
3121 3356 3.852286 ACGAGCATGTGTACCGATAAAA 58.148 40.909 0.00 0.00 0.00 1.52
3122 3357 3.513680 ACGAGCATGTGTACCGATAAA 57.486 42.857 0.00 0.00 0.00 1.40
3161 3466 1.477553 ATAGCAACCCCAACATGCAG 58.522 50.000 0.00 0.00 42.45 4.41
3204 3509 3.799755 GACGAACATGGCCGTGGC 61.800 66.667 28.37 18.25 39.30 5.01
3208 3513 2.885644 CCTCGACGAACATGGCCG 60.886 66.667 0.00 2.27 0.00 6.13
3243 3548 4.279420 GCCTTCTTTTCTGGTTCATTGAGT 59.721 41.667 0.00 0.00 0.00 3.41
3244 3549 4.522022 AGCCTTCTTTTCTGGTTCATTGAG 59.478 41.667 0.00 0.00 0.00 3.02
3252 3557 3.795688 TCATCAGCCTTCTTTTCTGGT 57.204 42.857 0.00 0.00 0.00 4.00
3342 3658 2.191128 ACCATGCAGTCTTTGAGACC 57.809 50.000 4.56 0.00 46.18 3.85
3444 3760 5.533903 CCCAACCGCTAGTAGTCTAAATAGA 59.466 44.000 0.00 0.00 0.00 1.98
3474 3790 1.378514 CATAAAGGCGCCACCAGGT 60.379 57.895 31.54 2.66 43.14 4.00
3475 3791 1.077787 TCATAAAGGCGCCACCAGG 60.078 57.895 31.54 14.39 43.14 4.45
3476 3792 1.718757 GCTCATAAAGGCGCCACCAG 61.719 60.000 31.54 15.64 43.14 4.00
3477 3793 1.748879 GCTCATAAAGGCGCCACCA 60.749 57.895 31.54 13.23 43.14 4.17
3478 3794 2.823829 CGCTCATAAAGGCGCCACC 61.824 63.158 31.54 0.33 44.64 4.61
3479 3795 2.709475 CGCTCATAAAGGCGCCAC 59.291 61.111 31.54 1.27 44.64 5.01
3484 3800 3.667960 CGCATAATTCCGCTCATAAAGGC 60.668 47.826 0.00 0.00 0.00 4.35
3485 3801 3.667960 GCGCATAATTCCGCTCATAAAGG 60.668 47.826 0.30 0.00 46.14 3.11
3486 3802 3.482786 GCGCATAATTCCGCTCATAAAG 58.517 45.455 0.30 0.00 46.14 1.85
3487 3803 3.536158 GCGCATAATTCCGCTCATAAA 57.464 42.857 0.30 0.00 46.14 1.40
3495 3811 4.201628 GCTAGATTAGTGCGCATAATTCCG 60.202 45.833 15.91 10.96 0.00 4.30
3496 3812 4.932200 AGCTAGATTAGTGCGCATAATTCC 59.068 41.667 15.91 0.00 0.00 3.01
3497 3813 5.406780 ACAGCTAGATTAGTGCGCATAATTC 59.593 40.000 15.91 10.77 0.00 2.17
3498 3814 5.300752 ACAGCTAGATTAGTGCGCATAATT 58.699 37.500 15.91 11.31 0.00 1.40
3499 3815 4.887748 ACAGCTAGATTAGTGCGCATAAT 58.112 39.130 15.91 17.77 0.00 1.28
3500 3816 4.299155 GACAGCTAGATTAGTGCGCATAA 58.701 43.478 15.91 13.68 0.00 1.90
3501 3817 3.609409 CGACAGCTAGATTAGTGCGCATA 60.609 47.826 15.91 4.23 0.00 3.14
3502 3818 2.748605 GACAGCTAGATTAGTGCGCAT 58.251 47.619 15.91 5.37 0.00 4.73
3503 3819 1.533965 CGACAGCTAGATTAGTGCGCA 60.534 52.381 5.66 5.66 0.00 6.09
3504 3820 1.124462 CGACAGCTAGATTAGTGCGC 58.876 55.000 0.00 0.00 0.00 6.09
3505 3821 2.476873 ACGACAGCTAGATTAGTGCG 57.523 50.000 0.00 0.00 0.00 5.34
3506 3822 5.332656 GCAAATACGACAGCTAGATTAGTGC 60.333 44.000 0.00 0.00 0.00 4.40
3507 3823 5.980116 AGCAAATACGACAGCTAGATTAGTG 59.020 40.000 0.00 0.00 35.19 2.74
3508 3824 6.150396 AGCAAATACGACAGCTAGATTAGT 57.850 37.500 0.00 0.00 35.19 2.24
3509 3825 7.648112 TGTTAGCAAATACGACAGCTAGATTAG 59.352 37.037 0.00 0.00 40.30 1.73
3510 3826 7.485810 TGTTAGCAAATACGACAGCTAGATTA 58.514 34.615 0.00 0.00 40.30 1.75
3511 3827 6.338146 TGTTAGCAAATACGACAGCTAGATT 58.662 36.000 0.00 0.00 40.30 2.40
3512 3828 5.902681 TGTTAGCAAATACGACAGCTAGAT 58.097 37.500 0.00 0.00 40.30 1.98
3513 3829 5.319140 TGTTAGCAAATACGACAGCTAGA 57.681 39.130 0.00 0.00 40.30 2.43
3514 3830 5.520288 ACATGTTAGCAAATACGACAGCTAG 59.480 40.000 0.00 0.00 40.30 3.42
3515 3831 5.290885 CACATGTTAGCAAATACGACAGCTA 59.709 40.000 0.00 0.00 38.47 3.32
3516 3832 4.093408 CACATGTTAGCAAATACGACAGCT 59.907 41.667 0.00 0.00 40.92 4.24
3517 3833 4.142902 ACACATGTTAGCAAATACGACAGC 60.143 41.667 0.00 0.00 0.00 4.40
3518 3834 5.107104 ACACACATGTTAGCAAATACGACAG 60.107 40.000 0.00 0.00 34.46 3.51
3519 3835 4.752604 ACACACATGTTAGCAAATACGACA 59.247 37.500 0.00 0.00 34.46 4.35
3520 3836 5.079406 CACACACATGTTAGCAAATACGAC 58.921 41.667 0.00 0.00 36.72 4.34
3521 3837 4.752604 ACACACACATGTTAGCAAATACGA 59.247 37.500 0.00 0.00 36.72 3.43
3522 3838 4.845598 CACACACACATGTTAGCAAATACG 59.154 41.667 0.00 0.00 36.72 3.06
3523 3839 5.153513 CCACACACACATGTTAGCAAATAC 58.846 41.667 0.00 0.00 36.72 1.89
3524 3840 4.824537 ACCACACACACATGTTAGCAAATA 59.175 37.500 0.00 0.00 36.72 1.40
3525 3841 3.636300 ACCACACACACATGTTAGCAAAT 59.364 39.130 0.00 0.00 36.72 2.32
3526 3842 3.020274 ACCACACACACATGTTAGCAAA 58.980 40.909 0.00 0.00 36.72 3.68
3527 3843 2.649190 ACCACACACACATGTTAGCAA 58.351 42.857 0.00 0.00 36.72 3.91
3528 3844 2.340210 ACCACACACACATGTTAGCA 57.660 45.000 0.00 0.00 36.72 3.49
3529 3845 5.153513 CAAATACCACACACACATGTTAGC 58.846 41.667 0.00 0.00 36.72 3.09
3530 3846 6.017523 TGACAAATACCACACACACATGTTAG 60.018 38.462 0.00 0.00 36.72 2.34
3531 3847 5.823045 TGACAAATACCACACACACATGTTA 59.177 36.000 0.00 0.00 36.72 2.41
3532 3848 4.642437 TGACAAATACCACACACACATGTT 59.358 37.500 0.00 0.00 36.72 2.71
3533 3849 4.203226 TGACAAATACCACACACACATGT 58.797 39.130 0.00 0.00 40.80 3.21
3534 3850 4.827304 TGACAAATACCACACACACATG 57.173 40.909 0.00 0.00 0.00 3.21
3535 3851 4.260990 CGTTGACAAATACCACACACACAT 60.261 41.667 0.00 0.00 0.00 3.21
3536 3852 3.064134 CGTTGACAAATACCACACACACA 59.936 43.478 0.00 0.00 0.00 3.72
3537 3853 3.064271 ACGTTGACAAATACCACACACAC 59.936 43.478 0.00 0.00 0.00 3.82
3538 3854 3.064134 CACGTTGACAAATACCACACACA 59.936 43.478 0.00 0.00 0.00 3.72
3539 3855 3.064271 ACACGTTGACAAATACCACACAC 59.936 43.478 0.00 0.00 0.00 3.82
3540 3856 3.271729 ACACGTTGACAAATACCACACA 58.728 40.909 0.00 0.00 0.00 3.72
3541 3857 3.955771 ACACGTTGACAAATACCACAC 57.044 42.857 0.00 0.00 0.00 3.82
3542 3858 3.487711 GCAACACGTTGACAAATACCACA 60.488 43.478 13.97 0.00 42.93 4.17
3543 3859 3.040099 GCAACACGTTGACAAATACCAC 58.960 45.455 13.97 0.00 42.93 4.16
3544 3860 2.286477 CGCAACACGTTGACAAATACCA 60.286 45.455 13.97 0.00 42.93 3.25
3545 3861 2.303537 CGCAACACGTTGACAAATACC 58.696 47.619 13.97 0.00 42.93 2.73
3557 3873 0.158096 GTACGAAGTCACGCAACACG 59.842 55.000 0.00 0.00 46.18 4.49
3558 3874 1.484356 AGTACGAAGTCACGCAACAC 58.516 50.000 0.00 0.00 43.93 3.32
3559 3875 3.352554 TTAGTACGAAGTCACGCAACA 57.647 42.857 0.00 0.00 43.93 3.33
3560 3876 6.400422 CAATATTAGTACGAAGTCACGCAAC 58.600 40.000 0.00 0.00 43.93 4.17
3561 3877 5.005012 GCAATATTAGTACGAAGTCACGCAA 59.995 40.000 0.00 0.00 43.93 4.85
3562 3878 4.501559 GCAATATTAGTACGAAGTCACGCA 59.498 41.667 0.00 0.00 43.93 5.24
3563 3879 4.738740 AGCAATATTAGTACGAAGTCACGC 59.261 41.667 0.00 0.00 43.93 5.34
3564 3880 5.173312 CCAGCAATATTAGTACGAAGTCACG 59.827 44.000 0.00 0.00 43.93 4.35
3565 3881 6.019801 CACCAGCAATATTAGTACGAAGTCAC 60.020 42.308 0.00 0.00 43.93 3.67
3566 3882 6.040247 CACCAGCAATATTAGTACGAAGTCA 58.960 40.000 0.00 0.00 43.93 3.41
3567 3883 5.050972 GCACCAGCAATATTAGTACGAAGTC 60.051 44.000 0.00 0.00 41.21 3.01
3568 3884 4.809426 GCACCAGCAATATTAGTACGAAGT 59.191 41.667 0.00 0.00 43.09 3.01
3569 3885 5.330271 GCACCAGCAATATTAGTACGAAG 57.670 43.478 0.00 0.00 41.58 3.79
3584 3900 0.240945 ACGTTAGCAAATGCACCAGC 59.759 50.000 8.28 0.00 45.16 4.85
3585 3901 1.464023 CGACGTTAGCAAATGCACCAG 60.464 52.381 8.28 0.00 45.16 4.00
3586 3902 0.515127 CGACGTTAGCAAATGCACCA 59.485 50.000 8.28 0.00 45.16 4.17
3587 3903 0.179200 CCGACGTTAGCAAATGCACC 60.179 55.000 8.28 0.00 45.16 5.01
3588 3904 0.515564 ACCGACGTTAGCAAATGCAC 59.484 50.000 8.28 0.00 45.16 4.57
3589 3905 2.081725 TACCGACGTTAGCAAATGCA 57.918 45.000 8.28 0.00 45.16 3.96
3590 3906 2.350498 ACATACCGACGTTAGCAAATGC 59.650 45.455 0.00 0.00 42.49 3.56
3591 3907 4.802039 ACTACATACCGACGTTAGCAAATG 59.198 41.667 0.00 0.00 0.00 2.32
3592 3908 5.002464 ACTACATACCGACGTTAGCAAAT 57.998 39.130 0.00 0.00 0.00 2.32
3593 3909 4.414852 GACTACATACCGACGTTAGCAAA 58.585 43.478 0.00 0.00 0.00 3.68
3594 3910 3.181497 GGACTACATACCGACGTTAGCAA 60.181 47.826 0.00 0.00 0.00 3.91
3595 3911 2.355756 GGACTACATACCGACGTTAGCA 59.644 50.000 0.00 0.00 0.00 3.49
3596 3912 2.355756 TGGACTACATACCGACGTTAGC 59.644 50.000 0.00 0.00 0.00 3.09
3597 3913 4.621068 TTGGACTACATACCGACGTTAG 57.379 45.455 0.00 0.00 0.00 2.34
3598 3914 5.125257 TCATTTGGACTACATACCGACGTTA 59.875 40.000 0.00 0.00 0.00 3.18
3599 3915 3.940209 TTTGGACTACATACCGACGTT 57.060 42.857 0.00 0.00 0.00 3.99
3600 3916 3.444742 TCATTTGGACTACATACCGACGT 59.555 43.478 0.00 0.00 0.00 4.34
3601 3917 4.036567 TCATTTGGACTACATACCGACG 57.963 45.455 0.00 0.00 0.00 5.12
3602 3918 4.098960 TCCTCATTTGGACTACATACCGAC 59.901 45.833 0.00 0.00 0.00 4.79
3603 3919 4.283337 TCCTCATTTGGACTACATACCGA 58.717 43.478 0.00 0.00 0.00 4.69
3604 3920 4.665833 TCCTCATTTGGACTACATACCG 57.334 45.455 0.00 0.00 0.00 4.02
3605 3921 5.230942 CGATCCTCATTTGGACTACATACC 58.769 45.833 0.00 0.00 39.17 2.73
3606 3922 5.221461 ACCGATCCTCATTTGGACTACATAC 60.221 44.000 0.00 0.00 39.17 2.39
3607 3923 4.899457 ACCGATCCTCATTTGGACTACATA 59.101 41.667 0.00 0.00 39.17 2.29
3608 3924 3.711704 ACCGATCCTCATTTGGACTACAT 59.288 43.478 0.00 0.00 39.17 2.29
3609 3925 3.104512 ACCGATCCTCATTTGGACTACA 58.895 45.455 0.00 0.00 39.17 2.74
3610 3926 3.821421 ACCGATCCTCATTTGGACTAC 57.179 47.619 0.00 0.00 39.17 2.73
3611 3927 3.517901 ACAACCGATCCTCATTTGGACTA 59.482 43.478 0.00 0.00 39.17 2.59
3612 3928 2.305927 ACAACCGATCCTCATTTGGACT 59.694 45.455 0.00 0.00 39.17 3.85
3613 3929 2.711542 ACAACCGATCCTCATTTGGAC 58.288 47.619 0.00 0.00 39.17 4.02
3614 3930 3.433306 AACAACCGATCCTCATTTGGA 57.567 42.857 0.00 0.00 40.82 3.53
3615 3931 5.399013 GTTTAACAACCGATCCTCATTTGG 58.601 41.667 0.00 0.00 0.00 3.28
3616 3932 5.399013 GGTTTAACAACCGATCCTCATTTG 58.601 41.667 0.00 0.00 43.40 2.32
3617 3933 5.638596 GGTTTAACAACCGATCCTCATTT 57.361 39.130 0.00 0.00 43.40 2.32
3629 3945 6.451393 TCCATGTATGCTTTGGTTTAACAAC 58.549 36.000 0.00 0.00 0.00 3.32
3630 3946 6.656632 TCCATGTATGCTTTGGTTTAACAA 57.343 33.333 0.00 0.00 0.00 2.83
3631 3947 6.656632 TTCCATGTATGCTTTGGTTTAACA 57.343 33.333 0.00 0.00 0.00 2.41
3632 3948 8.682710 TCTATTCCATGTATGCTTTGGTTTAAC 58.317 33.333 0.00 0.00 0.00 2.01
3633 3949 8.815565 TCTATTCCATGTATGCTTTGGTTTAA 57.184 30.769 0.00 0.00 0.00 1.52
3634 3950 8.682710 GTTCTATTCCATGTATGCTTTGGTTTA 58.317 33.333 0.00 0.00 0.00 2.01
3635 3951 7.397192 AGTTCTATTCCATGTATGCTTTGGTTT 59.603 33.333 0.00 0.00 0.00 3.27
3636 3952 6.891908 AGTTCTATTCCATGTATGCTTTGGTT 59.108 34.615 0.00 0.00 0.00 3.67
3637 3953 6.319658 CAGTTCTATTCCATGTATGCTTTGGT 59.680 38.462 0.00 0.00 0.00 3.67
3638 3954 6.732154 CAGTTCTATTCCATGTATGCTTTGG 58.268 40.000 0.00 0.00 0.00 3.28
3639 3955 6.183360 TGCAGTTCTATTCCATGTATGCTTTG 60.183 38.462 0.00 0.00 32.53 2.77
3640 3956 5.887598 TGCAGTTCTATTCCATGTATGCTTT 59.112 36.000 0.00 0.00 32.53 3.51
3641 3957 5.439721 TGCAGTTCTATTCCATGTATGCTT 58.560 37.500 0.00 0.00 32.53 3.91
3642 3958 5.039920 TGCAGTTCTATTCCATGTATGCT 57.960 39.130 0.00 0.00 32.53 3.79
3643 3959 4.818546 ACTGCAGTTCTATTCCATGTATGC 59.181 41.667 15.25 0.00 0.00 3.14
3644 3960 5.176406 CGACTGCAGTTCTATTCCATGTATG 59.824 44.000 22.65 0.00 0.00 2.39
3645 3961 5.292765 CGACTGCAGTTCTATTCCATGTAT 58.707 41.667 22.65 0.00 0.00 2.29
3646 3962 4.682787 CGACTGCAGTTCTATTCCATGTA 58.317 43.478 22.65 0.00 0.00 2.29
3647 3963 3.525537 CGACTGCAGTTCTATTCCATGT 58.474 45.455 22.65 0.00 0.00 3.21
3648 3964 2.286294 GCGACTGCAGTTCTATTCCATG 59.714 50.000 22.65 2.51 42.15 3.66
3649 3965 2.555199 GCGACTGCAGTTCTATTCCAT 58.445 47.619 22.65 0.00 42.15 3.41
3650 3966 2.010145 GCGACTGCAGTTCTATTCCA 57.990 50.000 22.65 0.00 42.15 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.