Multiple sequence alignment - TraesCS7B01G453600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G453600 chr7B 100.000 3372 0 0 1 3372 714532145 714528774 0.000000e+00 6228.0
1 TraesCS7B01G453600 chr7B 98.121 2820 24 4 579 3372 714452956 714450140 0.000000e+00 4887.0
2 TraesCS7B01G453600 chr7B 94.170 223 11 2 50 271 726800242 726800463 4.170000e-89 339.0
3 TraesCS7B01G453600 chr7B 93.636 220 13 1 49 267 89360820 89360601 9.020000e-86 327.0
4 TraesCS7B01G453600 chr5A 98.404 2820 19 1 579 3372 44279440 44276621 0.000000e+00 4935.0
5 TraesCS7B01G453600 chr7A 98.298 2820 21 2 579 3372 13133456 13130638 0.000000e+00 4916.0
6 TraesCS7B01G453600 chr7A 98.050 2820 29 5 579 3372 707670450 707673269 0.000000e+00 4879.0
7 TraesCS7B01G453600 chrUn 98.193 2822 24 7 578 3372 8808796 8805975 0.000000e+00 4903.0
8 TraesCS7B01G453600 chr3B 97.979 2820 25 2 579 3372 60270841 60273654 0.000000e+00 4863.0
9 TraesCS7B01G453600 chr3B 96.397 2831 70 13 574 3372 3763436 3760606 0.000000e+00 4634.0
10 TraesCS7B01G453600 chr3B 96.185 2831 76 3 574 3372 4663909 4661079 0.000000e+00 4601.0
11 TraesCS7B01G453600 chr3B 88.327 257 24 6 36 290 110911525 110911777 1.520000e-78 303.0
12 TraesCS7B01G453600 chr3B 97.059 34 1 0 266 299 386037170 386037203 1.310000e-04 58.4
13 TraesCS7B01G453600 chr2A 97.589 2820 36 12 579 3372 734935070 734932257 0.000000e+00 4802.0
14 TraesCS7B01G453600 chr2A 96.848 2824 50 11 579 3372 2768049 2765235 0.000000e+00 4686.0
15 TraesCS7B01G453600 chr5B 96.441 1124 31 2 580 1699 455290989 455289871 0.000000e+00 1845.0
16 TraesCS7B01G453600 chr5B 93.243 222 13 2 50 270 82211839 82211619 3.240000e-85 326.0
17 TraesCS7B01G453600 chr5B 90.698 43 3 1 266 307 547600479 547600521 4.700000e-04 56.5
18 TraesCS7B01G453600 chr2D 91.498 247 15 6 46 289 357650776 357651019 5.390000e-88 335.0
19 TraesCS7B01G453600 chr2D 92.825 223 15 1 46 267 204855797 204856019 4.200000e-84 322.0
20 TraesCS7B01G453600 chr3D 93.665 221 13 1 50 269 108290843 108291063 2.510000e-86 329.0
21 TraesCS7B01G453600 chr7D 93.274 223 14 1 46 267 326052541 326052763 9.020000e-86 327.0
22 TraesCS7B01G453600 chr5D 93.243 222 14 1 50 270 23838131 23837910 3.240000e-85 326.0
23 TraesCS7B01G453600 chr6A 100.000 28 0 0 272 299 153366181 153366208 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G453600 chr7B 714528774 714532145 3371 True 6228 6228 100.000 1 3372 1 chr7B.!!$R3 3371
1 TraesCS7B01G453600 chr7B 714450140 714452956 2816 True 4887 4887 98.121 579 3372 1 chr7B.!!$R2 2793
2 TraesCS7B01G453600 chr5A 44276621 44279440 2819 True 4935 4935 98.404 579 3372 1 chr5A.!!$R1 2793
3 TraesCS7B01G453600 chr7A 13130638 13133456 2818 True 4916 4916 98.298 579 3372 1 chr7A.!!$R1 2793
4 TraesCS7B01G453600 chr7A 707670450 707673269 2819 False 4879 4879 98.050 579 3372 1 chr7A.!!$F1 2793
5 TraesCS7B01G453600 chrUn 8805975 8808796 2821 True 4903 4903 98.193 578 3372 1 chrUn.!!$R1 2794
6 TraesCS7B01G453600 chr3B 60270841 60273654 2813 False 4863 4863 97.979 579 3372 1 chr3B.!!$F1 2793
7 TraesCS7B01G453600 chr3B 3760606 3763436 2830 True 4634 4634 96.397 574 3372 1 chr3B.!!$R1 2798
8 TraesCS7B01G453600 chr3B 4661079 4663909 2830 True 4601 4601 96.185 574 3372 1 chr3B.!!$R2 2798
9 TraesCS7B01G453600 chr2A 734932257 734935070 2813 True 4802 4802 97.589 579 3372 1 chr2A.!!$R2 2793
10 TraesCS7B01G453600 chr2A 2765235 2768049 2814 True 4686 4686 96.848 579 3372 1 chr2A.!!$R1 2793
11 TraesCS7B01G453600 chr5B 455289871 455290989 1118 True 1845 1845 96.441 580 1699 1 chr5B.!!$R2 1119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 515 0.037326 ACCATACACACACTGCCTCG 60.037 55.0 0.0 0.0 0.0 4.63 F
517 518 0.109272 ATACACACACTGCCTCGTCG 60.109 55.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 1964 1.000843 GGCTTGTTTGTCATTCACCCC 59.999 52.381 0.00 0.0 0.0 4.95 R
2417 2450 1.843368 CATGACATTCCAAGGCCAGT 58.157 50.000 5.01 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.564110 GCCCCCATAGTCCGCACC 62.564 72.222 0.00 0.00 0.00 5.01
18 19 2.768344 CCCCCATAGTCCGCACCT 60.768 66.667 0.00 0.00 0.00 4.00
19 20 1.458777 CCCCCATAGTCCGCACCTA 60.459 63.158 0.00 0.00 0.00 3.08
20 21 1.746517 CCCCATAGTCCGCACCTAC 59.253 63.158 0.00 0.00 0.00 3.18
21 22 1.362717 CCCATAGTCCGCACCTACG 59.637 63.158 0.00 0.00 0.00 3.51
22 23 1.105167 CCCATAGTCCGCACCTACGA 61.105 60.000 0.00 0.00 34.06 3.43
23 24 0.959553 CCATAGTCCGCACCTACGAT 59.040 55.000 0.00 0.00 34.06 3.73
24 25 2.156917 CCATAGTCCGCACCTACGATA 58.843 52.381 0.00 0.00 34.06 2.92
25 26 2.753452 CCATAGTCCGCACCTACGATAT 59.247 50.000 0.00 0.00 34.06 1.63
26 27 3.192844 CCATAGTCCGCACCTACGATATT 59.807 47.826 0.00 0.00 34.06 1.28
27 28 2.795175 AGTCCGCACCTACGATATTG 57.205 50.000 0.00 0.00 34.06 1.90
28 29 2.304092 AGTCCGCACCTACGATATTGA 58.696 47.619 0.00 0.00 34.06 2.57
29 30 2.891580 AGTCCGCACCTACGATATTGAT 59.108 45.455 0.00 0.00 34.06 2.57
30 31 3.321111 AGTCCGCACCTACGATATTGATT 59.679 43.478 0.00 0.00 34.06 2.57
31 32 3.428870 GTCCGCACCTACGATATTGATTG 59.571 47.826 0.00 0.00 34.06 2.67
32 33 2.157668 CCGCACCTACGATATTGATTGC 59.842 50.000 0.00 0.00 34.06 3.56
33 34 2.157668 CGCACCTACGATATTGATTGCC 59.842 50.000 0.00 0.00 34.06 4.52
34 35 2.484264 GCACCTACGATATTGATTGCCC 59.516 50.000 0.00 0.00 0.00 5.36
35 36 3.074412 CACCTACGATATTGATTGCCCC 58.926 50.000 0.00 0.00 0.00 5.80
36 37 2.039879 ACCTACGATATTGATTGCCCCC 59.960 50.000 0.00 0.00 0.00 5.40
37 38 2.039746 CCTACGATATTGATTGCCCCCA 59.960 50.000 0.00 0.00 0.00 4.96
38 39 2.746279 ACGATATTGATTGCCCCCAA 57.254 45.000 0.00 0.00 35.01 4.12
39 40 2.306847 ACGATATTGATTGCCCCCAAC 58.693 47.619 0.00 0.00 32.95 3.77
40 41 1.266718 CGATATTGATTGCCCCCAACG 59.733 52.381 0.00 0.00 32.95 4.10
41 42 1.613437 GATATTGATTGCCCCCAACGG 59.387 52.381 0.00 0.00 32.95 4.44
42 43 0.333312 TATTGATTGCCCCCAACGGT 59.667 50.000 0.00 0.00 32.95 4.83
43 44 0.970427 ATTGATTGCCCCCAACGGTC 60.970 55.000 0.00 0.00 32.95 4.79
44 45 2.754254 GATTGCCCCCAACGGTCC 60.754 66.667 0.00 0.00 32.95 4.46
45 46 3.577334 GATTGCCCCCAACGGTCCA 62.577 63.158 0.00 0.00 32.95 4.02
46 47 2.854300 GATTGCCCCCAACGGTCCAT 62.854 60.000 0.00 0.00 32.95 3.41
47 48 1.576368 ATTGCCCCCAACGGTCCATA 61.576 55.000 0.00 0.00 32.95 2.74
48 49 1.576368 TTGCCCCCAACGGTCCATAT 61.576 55.000 0.00 0.00 0.00 1.78
49 50 1.229076 GCCCCCAACGGTCCATATT 59.771 57.895 0.00 0.00 0.00 1.28
50 51 0.475044 GCCCCCAACGGTCCATATTA 59.525 55.000 0.00 0.00 0.00 0.98
51 52 1.816572 GCCCCCAACGGTCCATATTAC 60.817 57.143 0.00 0.00 0.00 1.89
52 53 1.772453 CCCCCAACGGTCCATATTACT 59.228 52.381 0.00 0.00 0.00 2.24
53 54 2.173996 CCCCCAACGGTCCATATTACTT 59.826 50.000 0.00 0.00 0.00 2.24
54 55 3.473625 CCCCAACGGTCCATATTACTTC 58.526 50.000 0.00 0.00 0.00 3.01
55 56 3.473625 CCCAACGGTCCATATTACTTCC 58.526 50.000 0.00 0.00 0.00 3.46
56 57 3.135895 CCCAACGGTCCATATTACTTCCT 59.864 47.826 0.00 0.00 0.00 3.36
57 58 4.377897 CCAACGGTCCATATTACTTCCTC 58.622 47.826 0.00 0.00 0.00 3.71
58 59 4.377897 CAACGGTCCATATTACTTCCTCC 58.622 47.826 0.00 0.00 0.00 4.30
59 60 3.649843 ACGGTCCATATTACTTCCTCCA 58.350 45.455 0.00 0.00 0.00 3.86
60 61 4.232091 ACGGTCCATATTACTTCCTCCAT 58.768 43.478 0.00 0.00 0.00 3.41
61 62 4.658901 ACGGTCCATATTACTTCCTCCATT 59.341 41.667 0.00 0.00 0.00 3.16
62 63 5.132144 ACGGTCCATATTACTTCCTCCATTT 59.868 40.000 0.00 0.00 0.00 2.32
63 64 5.701290 CGGTCCATATTACTTCCTCCATTTC 59.299 44.000 0.00 0.00 0.00 2.17
64 65 6.601332 GGTCCATATTACTTCCTCCATTTCA 58.399 40.000 0.00 0.00 0.00 2.69
65 66 6.712547 GGTCCATATTACTTCCTCCATTTCAG 59.287 42.308 0.00 0.00 0.00 3.02
66 67 7.283329 GTCCATATTACTTCCTCCATTTCAGT 58.717 38.462 0.00 0.00 0.00 3.41
67 68 7.775561 GTCCATATTACTTCCTCCATTTCAGTT 59.224 37.037 0.00 0.00 0.00 3.16
68 69 8.336235 TCCATATTACTTCCTCCATTTCAGTTT 58.664 33.333 0.00 0.00 0.00 2.66
69 70 9.627123 CCATATTACTTCCTCCATTTCAGTTTA 57.373 33.333 0.00 0.00 0.00 2.01
72 73 8.934023 ATTACTTCCTCCATTTCAGTTTACAA 57.066 30.769 0.00 0.00 0.00 2.41
73 74 6.884280 ACTTCCTCCATTTCAGTTTACAAG 57.116 37.500 0.00 0.00 0.00 3.16
74 75 6.365520 ACTTCCTCCATTTCAGTTTACAAGT 58.634 36.000 0.00 0.00 0.00 3.16
75 76 6.486993 ACTTCCTCCATTTCAGTTTACAAGTC 59.513 38.462 0.00 0.00 0.00 3.01
76 77 5.313712 TCCTCCATTTCAGTTTACAAGTCC 58.686 41.667 0.00 0.00 0.00 3.85
77 78 5.073144 TCCTCCATTTCAGTTTACAAGTCCT 59.927 40.000 0.00 0.00 0.00 3.85
78 79 6.271391 TCCTCCATTTCAGTTTACAAGTCCTA 59.729 38.462 0.00 0.00 0.00 2.94
79 80 6.371825 CCTCCATTTCAGTTTACAAGTCCTAC 59.628 42.308 0.00 0.00 0.00 3.18
80 81 5.929992 TCCATTTCAGTTTACAAGTCCTACG 59.070 40.000 0.00 0.00 0.00 3.51
81 82 5.390567 CCATTTCAGTTTACAAGTCCTACGC 60.391 44.000 0.00 0.00 0.00 4.42
82 83 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
83 84 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
84 85 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
85 86 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
86 87 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
87 88 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
88 89 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
89 90 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
90 91 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
91 92 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
92 93 3.051081 AGTCCTACGCGTATACCTAGG 57.949 52.381 20.91 18.03 0.00 3.02
93 94 2.370189 AGTCCTACGCGTATACCTAGGT 59.630 50.000 20.91 20.57 0.00 3.08
94 95 3.142174 GTCCTACGCGTATACCTAGGTT 58.858 50.000 22.11 10.62 0.00 3.50
95 96 3.058639 GTCCTACGCGTATACCTAGGTTG 60.059 52.174 22.11 9.15 0.00 3.77
96 97 2.880890 CCTACGCGTATACCTAGGTTGT 59.119 50.000 22.11 12.13 0.00 3.32
97 98 3.058639 CCTACGCGTATACCTAGGTTGTC 60.059 52.174 22.11 9.56 0.00 3.18
98 99 2.368439 ACGCGTATACCTAGGTTGTCA 58.632 47.619 22.11 1.21 0.00 3.58
99 100 2.754552 ACGCGTATACCTAGGTTGTCAA 59.245 45.455 22.11 0.75 0.00 3.18
100 101 3.382546 ACGCGTATACCTAGGTTGTCAAT 59.617 43.478 22.11 9.64 0.00 2.57
101 102 4.142093 ACGCGTATACCTAGGTTGTCAATT 60.142 41.667 22.11 0.00 0.00 2.32
102 103 4.807304 CGCGTATACCTAGGTTGTCAATTT 59.193 41.667 22.11 0.00 0.00 1.82
103 104 5.292589 CGCGTATACCTAGGTTGTCAATTTT 59.707 40.000 22.11 0.00 0.00 1.82
104 105 6.476380 CGCGTATACCTAGGTTGTCAATTTTA 59.524 38.462 22.11 0.00 0.00 1.52
105 106 7.170320 CGCGTATACCTAGGTTGTCAATTTTAT 59.830 37.037 22.11 5.71 0.00 1.40
106 107 8.493547 GCGTATACCTAGGTTGTCAATTTTATC 58.506 37.037 22.11 0.00 0.00 1.75
107 108 9.537192 CGTATACCTAGGTTGTCAATTTTATCA 57.463 33.333 22.11 0.00 0.00 2.15
109 110 8.747538 ATACCTAGGTTGTCAATTTTATCACC 57.252 34.615 22.11 0.00 0.00 4.02
110 111 5.949952 ACCTAGGTTGTCAATTTTATCACCC 59.050 40.000 9.21 0.00 0.00 4.61
111 112 6.187682 CCTAGGTTGTCAATTTTATCACCCT 58.812 40.000 0.00 0.00 0.00 4.34
112 113 7.037153 ACCTAGGTTGTCAATTTTATCACCCTA 60.037 37.037 9.21 0.00 0.00 3.53
113 114 7.832187 CCTAGGTTGTCAATTTTATCACCCTAA 59.168 37.037 0.00 0.00 27.80 2.69
114 115 9.408648 CTAGGTTGTCAATTTTATCACCCTAAT 57.591 33.333 0.00 0.00 27.80 1.73
116 117 9.936329 AGGTTGTCAATTTTATCACCCTAATAT 57.064 29.630 0.00 0.00 0.00 1.28
163 164 8.868522 AGACCATTTGAAAATAGAACATCTGA 57.131 30.769 0.00 0.00 0.00 3.27
164 165 9.300681 AGACCATTTGAAAATAGAACATCTGAA 57.699 29.630 0.00 0.00 0.00 3.02
165 166 9.565213 GACCATTTGAAAATAGAACATCTGAAG 57.435 33.333 0.00 0.00 0.00 3.02
166 167 9.082313 ACCATTTGAAAATAGAACATCTGAAGT 57.918 29.630 0.00 0.00 0.00 3.01
167 168 9.918630 CCATTTGAAAATAGAACATCTGAAGTT 57.081 29.630 0.00 0.00 0.00 2.66
210 211 9.733556 TGTAATATATGGCCTGTATTAGTTTGG 57.266 33.333 3.32 0.00 27.75 3.28
211 212 9.734984 GTAATATATGGCCTGTATTAGTTTGGT 57.265 33.333 3.32 0.00 27.75 3.67
212 213 8.863872 AATATATGGCCTGTATTAGTTTGGTC 57.136 34.615 3.32 0.00 0.00 4.02
213 214 4.584638 ATGGCCTGTATTAGTTTGGTCA 57.415 40.909 3.32 0.00 36.80 4.02
214 215 4.374689 TGGCCTGTATTAGTTTGGTCAA 57.625 40.909 3.32 0.00 28.69 3.18
215 216 4.730966 TGGCCTGTATTAGTTTGGTCAAA 58.269 39.130 3.32 0.00 28.69 2.69
216 217 5.329399 TGGCCTGTATTAGTTTGGTCAAAT 58.671 37.500 3.32 0.00 32.36 2.32
217 218 5.777732 TGGCCTGTATTAGTTTGGTCAAATT 59.222 36.000 3.32 0.00 32.36 1.82
218 219 6.099341 GGCCTGTATTAGTTTGGTCAAATTG 58.901 40.000 0.00 0.00 32.36 2.32
219 220 6.071616 GGCCTGTATTAGTTTGGTCAAATTGA 60.072 38.462 0.00 0.00 32.36 2.57
220 221 6.806739 GCCTGTATTAGTTTGGTCAAATTGAC 59.193 38.462 17.16 17.16 46.23 3.18
231 232 3.763057 GTCAAATTGACAACCTAGGGGT 58.237 45.455 20.08 11.06 46.22 4.95
232 233 4.913784 GTCAAATTGACAACCTAGGGGTA 58.086 43.478 20.08 0.00 46.22 3.69
233 234 4.698780 GTCAAATTGACAACCTAGGGGTAC 59.301 45.833 20.08 2.61 46.22 3.34
234 235 3.622166 AATTGACAACCTAGGGGTACG 57.378 47.619 14.81 0.00 46.67 3.67
235 236 0.609662 TTGACAACCTAGGGGTACGC 59.390 55.000 14.81 0.29 46.67 4.42
236 237 1.140375 GACAACCTAGGGGTACGCG 59.860 63.158 14.81 3.53 46.67 6.01
237 238 2.202837 CAACCTAGGGGTACGCGC 60.203 66.667 14.81 0.00 46.67 6.86
238 239 2.681064 AACCTAGGGGTACGCGCA 60.681 61.111 14.81 0.00 46.67 6.09
239 240 3.010413 AACCTAGGGGTACGCGCAC 62.010 63.158 14.81 2.26 46.67 5.34
247 248 2.806198 GTACGCGCACGCCTTGTA 60.806 61.111 5.73 3.39 45.53 2.41
248 249 2.049341 TACGCGCACGCCTTGTAA 60.049 55.556 5.73 0.00 45.53 2.41
249 250 1.664017 TACGCGCACGCCTTGTAAA 60.664 52.632 5.73 0.00 45.53 2.01
250 251 1.888958 TACGCGCACGCCTTGTAAAC 61.889 55.000 5.73 0.00 45.53 2.01
251 252 2.943653 GCGCACGCCTTGTAAACT 59.056 55.556 0.30 0.00 34.56 2.66
252 253 1.440353 GCGCACGCCTTGTAAACTG 60.440 57.895 0.30 0.00 34.56 3.16
253 254 1.837538 GCGCACGCCTTGTAAACTGA 61.838 55.000 0.30 0.00 34.56 3.41
254 255 0.163788 CGCACGCCTTGTAAACTGAG 59.836 55.000 0.00 0.00 0.00 3.35
255 256 1.508632 GCACGCCTTGTAAACTGAGA 58.491 50.000 0.00 0.00 0.00 3.27
256 257 1.461127 GCACGCCTTGTAAACTGAGAG 59.539 52.381 0.00 0.00 0.00 3.20
257 258 2.069273 CACGCCTTGTAAACTGAGAGG 58.931 52.381 0.00 0.00 0.00 3.69
258 259 1.002087 ACGCCTTGTAAACTGAGAGGG 59.998 52.381 0.00 0.00 0.00 4.30
259 260 1.275291 CGCCTTGTAAACTGAGAGGGA 59.725 52.381 0.00 0.00 0.00 4.20
260 261 2.675317 CGCCTTGTAAACTGAGAGGGAG 60.675 54.545 0.00 0.00 0.00 4.30
261 262 2.355209 GCCTTGTAAACTGAGAGGGAGG 60.355 54.545 0.00 0.00 0.00 4.30
262 263 2.237392 CCTTGTAAACTGAGAGGGAGGG 59.763 54.545 0.00 0.00 0.00 4.30
263 264 3.173965 CTTGTAAACTGAGAGGGAGGGA 58.826 50.000 0.00 0.00 0.00 4.20
264 265 2.821437 TGTAAACTGAGAGGGAGGGAG 58.179 52.381 0.00 0.00 0.00 4.30
265 266 2.111972 TGTAAACTGAGAGGGAGGGAGT 59.888 50.000 0.00 0.00 0.00 3.85
266 267 3.335786 TGTAAACTGAGAGGGAGGGAGTA 59.664 47.826 0.00 0.00 0.00 2.59
267 268 2.535836 AACTGAGAGGGAGGGAGTAC 57.464 55.000 0.00 0.00 0.00 2.73
268 269 1.383963 ACTGAGAGGGAGGGAGTACA 58.616 55.000 0.00 0.00 0.00 2.90
269 270 1.717077 ACTGAGAGGGAGGGAGTACAA 59.283 52.381 0.00 0.00 0.00 2.41
270 271 2.316372 ACTGAGAGGGAGGGAGTACAAT 59.684 50.000 0.00 0.00 0.00 2.71
271 272 3.246167 ACTGAGAGGGAGGGAGTACAATT 60.246 47.826 0.00 0.00 0.00 2.32
272 273 3.777522 CTGAGAGGGAGGGAGTACAATTT 59.222 47.826 0.00 0.00 0.00 1.82
273 274 4.955335 TGAGAGGGAGGGAGTACAATTTA 58.045 43.478 0.00 0.00 0.00 1.40
274 275 4.715297 TGAGAGGGAGGGAGTACAATTTAC 59.285 45.833 0.00 0.00 0.00 2.01
275 276 4.961585 AGAGGGAGGGAGTACAATTTACT 58.038 43.478 0.00 1.47 0.00 2.24
276 277 4.963628 AGAGGGAGGGAGTACAATTTACTC 59.036 45.833 14.44 14.44 42.28 2.59
277 278 3.705072 AGGGAGGGAGTACAATTTACTCG 59.295 47.826 15.48 0.00 43.53 4.18
278 279 3.450096 GGGAGGGAGTACAATTTACTCGT 59.550 47.826 15.48 9.42 43.53 4.18
279 280 4.646492 GGGAGGGAGTACAATTTACTCGTA 59.354 45.833 15.48 0.00 43.53 3.43
280 281 5.303845 GGGAGGGAGTACAATTTACTCGTAT 59.696 44.000 15.48 8.43 43.53 3.06
281 282 6.491403 GGGAGGGAGTACAATTTACTCGTATA 59.509 42.308 15.48 0.00 43.53 1.47
282 283 7.366513 GGAGGGAGTACAATTTACTCGTATAC 58.633 42.308 15.48 0.00 43.53 1.47
283 284 7.230309 GGAGGGAGTACAATTTACTCGTATACT 59.770 40.741 15.48 10.88 43.53 2.12
284 285 9.277783 GAGGGAGTACAATTTACTCGTATACTA 57.722 37.037 15.48 0.00 43.53 1.82
285 286 9.804977 AGGGAGTACAATTTACTCGTATACTAT 57.195 33.333 15.48 0.00 43.53 2.12
313 314 8.788325 AGTAGTATAGAAAATGTCCAAACACC 57.212 34.615 0.00 0.00 38.48 4.16
314 315 8.603304 AGTAGTATAGAAAATGTCCAAACACCT 58.397 33.333 0.00 0.00 38.48 4.00
315 316 9.227777 GTAGTATAGAAAATGTCCAAACACCTT 57.772 33.333 0.00 0.00 38.48 3.50
316 317 8.110860 AGTATAGAAAATGTCCAAACACCTTG 57.889 34.615 0.00 0.00 38.48 3.61
317 318 7.942341 AGTATAGAAAATGTCCAAACACCTTGA 59.058 33.333 0.00 0.00 38.48 3.02
318 319 5.930837 AGAAAATGTCCAAACACCTTGAA 57.069 34.783 0.00 0.00 38.48 2.69
319 320 6.293004 AGAAAATGTCCAAACACCTTGAAA 57.707 33.333 0.00 0.00 38.48 2.69
320 321 6.888105 AGAAAATGTCCAAACACCTTGAAAT 58.112 32.000 0.00 0.00 38.48 2.17
321 322 7.337938 AGAAAATGTCCAAACACCTTGAAATT 58.662 30.769 0.00 0.00 38.48 1.82
322 323 7.495606 AGAAAATGTCCAAACACCTTGAAATTC 59.504 33.333 0.00 0.00 38.48 2.17
323 324 6.484364 AATGTCCAAACACCTTGAAATTCT 57.516 33.333 0.00 0.00 38.48 2.40
324 325 5.261209 TGTCCAAACACCTTGAAATTCTG 57.739 39.130 0.00 0.00 37.17 3.02
325 326 4.051237 GTCCAAACACCTTGAAATTCTGC 58.949 43.478 0.00 0.00 37.17 4.26
326 327 3.703556 TCCAAACACCTTGAAATTCTGCA 59.296 39.130 0.00 0.00 37.17 4.41
327 328 4.344679 TCCAAACACCTTGAAATTCTGCAT 59.655 37.500 0.00 0.00 37.17 3.96
328 329 4.449743 CCAAACACCTTGAAATTCTGCATG 59.550 41.667 0.00 0.00 37.17 4.06
329 330 4.942761 AACACCTTGAAATTCTGCATGT 57.057 36.364 0.00 0.00 0.00 3.21
330 331 4.247267 ACACCTTGAAATTCTGCATGTG 57.753 40.909 0.00 0.00 0.00 3.21
331 332 2.991190 CACCTTGAAATTCTGCATGTGC 59.009 45.455 0.00 0.00 42.50 4.57
332 333 2.028748 ACCTTGAAATTCTGCATGTGCC 60.029 45.455 2.07 0.00 41.18 5.01
333 334 2.232941 CCTTGAAATTCTGCATGTGCCT 59.767 45.455 2.07 0.00 41.18 4.75
334 335 3.444742 CCTTGAAATTCTGCATGTGCCTA 59.555 43.478 2.07 0.00 41.18 3.93
335 336 4.439700 CCTTGAAATTCTGCATGTGCCTAG 60.440 45.833 2.07 0.00 41.18 3.02
336 337 3.954200 TGAAATTCTGCATGTGCCTAGA 58.046 40.909 2.07 0.00 41.18 2.43
337 338 4.334552 TGAAATTCTGCATGTGCCTAGAA 58.665 39.130 9.35 9.35 41.18 2.10
338 339 4.397103 TGAAATTCTGCATGTGCCTAGAAG 59.603 41.667 11.71 0.00 36.79 2.85
339 340 3.920231 ATTCTGCATGTGCCTAGAAGA 57.080 42.857 11.71 2.06 36.79 2.87
340 341 3.920231 TTCTGCATGTGCCTAGAAGAT 57.080 42.857 2.07 0.00 41.18 2.40
341 342 3.920231 TCTGCATGTGCCTAGAAGATT 57.080 42.857 2.07 0.00 41.18 2.40
342 343 3.801698 TCTGCATGTGCCTAGAAGATTC 58.198 45.455 2.07 0.00 41.18 2.52
343 344 3.453717 TCTGCATGTGCCTAGAAGATTCT 59.546 43.478 2.07 0.07 41.18 2.40
344 345 3.801698 TGCATGTGCCTAGAAGATTCTC 58.198 45.455 2.07 0.00 41.18 2.87
345 346 3.453717 TGCATGTGCCTAGAAGATTCTCT 59.546 43.478 2.07 0.00 41.18 3.10
346 347 4.651045 TGCATGTGCCTAGAAGATTCTCTA 59.349 41.667 2.07 0.00 41.18 2.43
347 348 5.129320 TGCATGTGCCTAGAAGATTCTCTAA 59.871 40.000 2.07 0.00 41.18 2.10
348 349 6.051717 GCATGTGCCTAGAAGATTCTCTAAA 58.948 40.000 0.00 0.00 35.41 1.85
349 350 6.018343 GCATGTGCCTAGAAGATTCTCTAAAC 60.018 42.308 0.00 0.00 35.41 2.01
350 351 6.859112 TGTGCCTAGAAGATTCTCTAAACT 57.141 37.500 0.00 0.00 38.70 2.66
351 352 7.246171 TGTGCCTAGAAGATTCTCTAAACTT 57.754 36.000 0.00 0.00 38.70 2.66
352 353 7.680730 TGTGCCTAGAAGATTCTCTAAACTTT 58.319 34.615 0.00 0.00 38.70 2.66
353 354 8.157476 TGTGCCTAGAAGATTCTCTAAACTTTT 58.843 33.333 0.00 0.00 38.70 2.27
354 355 9.004717 GTGCCTAGAAGATTCTCTAAACTTTTT 57.995 33.333 0.00 0.00 38.70 1.94
416 417 8.716619 TTTTCTTTAAATGTATTGTTCGTCGG 57.283 30.769 0.00 0.00 0.00 4.79
417 418 7.655236 TTCTTTAAATGTATTGTTCGTCGGA 57.345 32.000 0.00 0.00 0.00 4.55
418 419 7.837202 TCTTTAAATGTATTGTTCGTCGGAT 57.163 32.000 0.00 0.00 0.00 4.18
419 420 7.680982 TCTTTAAATGTATTGTTCGTCGGATG 58.319 34.615 0.00 0.00 0.00 3.51
420 421 3.944422 AATGTATTGTTCGTCGGATGC 57.056 42.857 0.00 0.00 0.00 3.91
421 422 2.371910 TGTATTGTTCGTCGGATGCA 57.628 45.000 0.00 0.00 0.00 3.96
422 423 2.267426 TGTATTGTTCGTCGGATGCAG 58.733 47.619 0.00 0.00 0.00 4.41
423 424 2.094442 TGTATTGTTCGTCGGATGCAGA 60.094 45.455 0.00 0.00 0.00 4.26
424 425 1.359848 ATTGTTCGTCGGATGCAGAC 58.640 50.000 0.00 0.00 35.41 3.51
425 426 0.669318 TTGTTCGTCGGATGCAGACC 60.669 55.000 0.00 0.00 35.33 3.85
426 427 1.810030 GTTCGTCGGATGCAGACCC 60.810 63.158 7.06 0.45 35.33 4.46
427 428 1.982395 TTCGTCGGATGCAGACCCT 60.982 57.895 7.06 0.00 35.33 4.34
428 429 2.202797 CGTCGGATGCAGACCCTG 60.203 66.667 7.06 0.00 35.33 4.45
438 439 3.165606 CAGACCCTGCATCACCTTC 57.834 57.895 0.00 0.00 0.00 3.46
439 440 0.617413 CAGACCCTGCATCACCTTCT 59.383 55.000 0.00 0.00 0.00 2.85
440 441 1.833630 CAGACCCTGCATCACCTTCTA 59.166 52.381 0.00 0.00 0.00 2.10
441 442 2.237143 CAGACCCTGCATCACCTTCTAA 59.763 50.000 0.00 0.00 0.00 2.10
442 443 3.118112 CAGACCCTGCATCACCTTCTAAT 60.118 47.826 0.00 0.00 0.00 1.73
443 444 3.118112 AGACCCTGCATCACCTTCTAATG 60.118 47.826 0.00 0.00 0.00 1.90
444 445 2.092212 ACCCTGCATCACCTTCTAATGG 60.092 50.000 0.00 0.00 0.00 3.16
445 446 2.579873 CCTGCATCACCTTCTAATGGG 58.420 52.381 0.00 0.00 0.00 4.00
446 447 1.952296 CTGCATCACCTTCTAATGGGC 59.048 52.381 0.00 0.00 0.00 5.36
447 448 1.565759 TGCATCACCTTCTAATGGGCT 59.434 47.619 0.00 0.00 0.00 5.19
448 449 2.025037 TGCATCACCTTCTAATGGGCTT 60.025 45.455 0.00 0.00 0.00 4.35
449 450 3.201930 TGCATCACCTTCTAATGGGCTTA 59.798 43.478 0.00 0.00 0.00 3.09
450 451 3.565902 GCATCACCTTCTAATGGGCTTAC 59.434 47.826 0.00 0.00 0.00 2.34
451 452 3.536956 TCACCTTCTAATGGGCTTACG 57.463 47.619 0.00 0.00 0.00 3.18
452 453 2.169769 TCACCTTCTAATGGGCTTACGG 59.830 50.000 0.00 0.00 0.00 4.02
453 454 1.134189 ACCTTCTAATGGGCTTACGGC 60.134 52.381 0.00 0.00 40.90 5.68
454 455 1.141053 CCTTCTAATGGGCTTACGGCT 59.859 52.381 0.00 0.00 41.46 5.52
455 456 2.213499 CTTCTAATGGGCTTACGGCTG 58.787 52.381 0.00 0.00 41.46 4.85
456 457 1.200519 TCTAATGGGCTTACGGCTGT 58.799 50.000 2.42 2.42 41.46 4.40
457 458 1.557832 TCTAATGGGCTTACGGCTGTT 59.442 47.619 1.99 0.00 41.46 3.16
458 459 1.940613 CTAATGGGCTTACGGCTGTTC 59.059 52.381 1.99 0.00 41.46 3.18
459 460 1.024579 AATGGGCTTACGGCTGTTCG 61.025 55.000 1.99 0.00 41.46 3.95
460 461 2.818274 GGGCTTACGGCTGTTCGG 60.818 66.667 1.99 0.00 41.46 4.30
461 462 2.047560 GGCTTACGGCTGTTCGGT 60.048 61.111 1.99 0.00 41.46 4.69
462 463 1.216178 GGCTTACGGCTGTTCGGTA 59.784 57.895 1.99 0.00 41.46 4.02
463 464 0.804933 GGCTTACGGCTGTTCGGTAG 60.805 60.000 1.99 0.00 41.46 3.18
464 465 0.108945 GCTTACGGCTGTTCGGTAGT 60.109 55.000 1.99 0.00 38.06 2.73
465 466 1.905449 CTTACGGCTGTTCGGTAGTC 58.095 55.000 1.99 0.00 33.00 2.59
466 467 0.527565 TTACGGCTGTTCGGTAGTCC 59.472 55.000 1.99 0.00 33.00 3.85
467 468 0.322816 TACGGCTGTTCGGTAGTCCT 60.323 55.000 1.99 0.00 0.00 3.85
468 469 1.153823 CGGCTGTTCGGTAGTCCTG 60.154 63.158 0.00 0.00 0.00 3.86
469 470 1.218316 GGCTGTTCGGTAGTCCTGG 59.782 63.158 0.00 0.00 0.00 4.45
470 471 1.218316 GCTGTTCGGTAGTCCTGGG 59.782 63.158 0.00 0.00 0.00 4.45
471 472 1.218316 CTGTTCGGTAGTCCTGGGC 59.782 63.158 0.00 0.00 0.00 5.36
472 473 2.240162 CTGTTCGGTAGTCCTGGGCC 62.240 65.000 0.00 0.00 0.00 5.80
473 474 1.988406 GTTCGGTAGTCCTGGGCCT 60.988 63.158 4.53 0.00 0.00 5.19
474 475 0.685458 GTTCGGTAGTCCTGGGCCTA 60.685 60.000 4.53 0.00 0.00 3.93
475 476 0.396695 TTCGGTAGTCCTGGGCCTAG 60.397 60.000 9.64 9.64 0.00 3.02
476 477 2.499827 CGGTAGTCCTGGGCCTAGC 61.500 68.421 11.38 0.00 0.00 3.42
477 478 1.382695 GGTAGTCCTGGGCCTAGCA 60.383 63.158 11.38 0.00 33.09 3.49
478 479 1.403687 GGTAGTCCTGGGCCTAGCAG 61.404 65.000 11.38 5.49 33.09 4.24
479 480 1.075226 TAGTCCTGGGCCTAGCAGG 60.075 63.158 17.96 17.96 38.80 4.85
488 489 3.496160 CCTAGCAGGCCTGGGCAT 61.496 66.667 33.46 12.57 44.11 4.40
489 490 2.599597 CTAGCAGGCCTGGGCATT 59.400 61.111 33.46 8.41 44.11 3.56
490 491 1.527844 CTAGCAGGCCTGGGCATTC 60.528 63.158 33.46 15.92 44.11 2.67
491 492 3.405093 TAGCAGGCCTGGGCATTCG 62.405 63.158 33.46 6.48 44.11 3.34
493 494 4.809496 CAGGCCTGGGCATTCGCT 62.809 66.667 26.14 0.00 44.11 4.93
494 495 3.089874 AGGCCTGGGCATTCGCTA 61.090 61.111 23.25 0.00 44.11 4.26
495 496 2.124320 GGCCTGGGCATTCGCTAA 60.124 61.111 16.34 0.00 44.11 3.09
496 497 2.481471 GGCCTGGGCATTCGCTAAC 61.481 63.158 16.34 0.00 44.11 2.34
497 498 2.481471 GCCTGGGCATTCGCTAACC 61.481 63.158 6.75 0.00 41.49 2.85
498 499 1.077787 CCTGGGCATTCGCTAACCA 60.078 57.895 0.00 0.00 38.60 3.67
499 500 0.466189 CCTGGGCATTCGCTAACCAT 60.466 55.000 0.00 0.00 38.60 3.55
500 501 1.202758 CCTGGGCATTCGCTAACCATA 60.203 52.381 0.00 0.00 38.60 2.74
501 502 1.873591 CTGGGCATTCGCTAACCATAC 59.126 52.381 0.00 0.00 38.60 2.39
502 503 1.210722 TGGGCATTCGCTAACCATACA 59.789 47.619 0.00 0.00 38.60 2.29
503 504 1.602377 GGGCATTCGCTAACCATACAC 59.398 52.381 0.00 0.00 38.60 2.90
504 505 2.285083 GGCATTCGCTAACCATACACA 58.715 47.619 0.00 0.00 38.60 3.72
505 506 2.031683 GGCATTCGCTAACCATACACAC 59.968 50.000 0.00 0.00 38.60 3.82
506 507 2.675844 GCATTCGCTAACCATACACACA 59.324 45.455 0.00 0.00 34.30 3.72
507 508 3.485216 GCATTCGCTAACCATACACACAC 60.485 47.826 0.00 0.00 34.30 3.82
508 509 3.671008 TTCGCTAACCATACACACACT 57.329 42.857 0.00 0.00 0.00 3.55
509 510 2.954316 TCGCTAACCATACACACACTG 58.046 47.619 0.00 0.00 0.00 3.66
510 511 1.393539 CGCTAACCATACACACACTGC 59.606 52.381 0.00 0.00 0.00 4.40
511 512 1.737793 GCTAACCATACACACACTGCC 59.262 52.381 0.00 0.00 0.00 4.85
512 513 2.615493 GCTAACCATACACACACTGCCT 60.615 50.000 0.00 0.00 0.00 4.75
513 514 2.185004 AACCATACACACACTGCCTC 57.815 50.000 0.00 0.00 0.00 4.70
514 515 0.037326 ACCATACACACACTGCCTCG 60.037 55.000 0.00 0.00 0.00 4.63
515 516 0.037326 CCATACACACACTGCCTCGT 60.037 55.000 0.00 0.00 0.00 4.18
516 517 1.350193 CATACACACACTGCCTCGTC 58.650 55.000 0.00 0.00 0.00 4.20
517 518 0.109272 ATACACACACTGCCTCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
518 519 1.449726 TACACACACTGCCTCGTCGT 61.450 55.000 0.00 0.00 0.00 4.34
519 520 1.591594 CACACACTGCCTCGTCGTT 60.592 57.895 0.00 0.00 0.00 3.85
520 521 1.299926 ACACACTGCCTCGTCGTTC 60.300 57.895 0.00 0.00 0.00 3.95
521 522 2.022129 CACACTGCCTCGTCGTTCC 61.022 63.158 0.00 0.00 0.00 3.62
522 523 2.432628 CACTGCCTCGTCGTTCCC 60.433 66.667 0.00 0.00 0.00 3.97
523 524 3.692406 ACTGCCTCGTCGTTCCCC 61.692 66.667 0.00 0.00 0.00 4.81
524 525 3.382832 CTGCCTCGTCGTTCCCCT 61.383 66.667 0.00 0.00 0.00 4.79
525 526 3.358076 CTGCCTCGTCGTTCCCCTC 62.358 68.421 0.00 0.00 0.00 4.30
526 527 4.493747 GCCTCGTCGTTCCCCTCG 62.494 72.222 0.00 0.00 0.00 4.63
527 528 2.749044 CCTCGTCGTTCCCCTCGA 60.749 66.667 0.00 0.00 34.91 4.04
528 529 2.119655 CCTCGTCGTTCCCCTCGAT 61.120 63.158 0.00 0.00 39.45 3.59
529 530 1.355916 CTCGTCGTTCCCCTCGATC 59.644 63.158 0.00 0.00 39.45 3.69
530 531 2.061182 CTCGTCGTTCCCCTCGATCC 62.061 65.000 0.00 0.00 39.45 3.36
531 532 2.412323 CGTCGTTCCCCTCGATCCA 61.412 63.158 0.00 0.00 39.45 3.41
532 533 1.895238 GTCGTTCCCCTCGATCCAA 59.105 57.895 0.00 0.00 39.45 3.53
533 534 0.248289 GTCGTTCCCCTCGATCCAAA 59.752 55.000 0.00 0.00 39.45 3.28
534 535 0.978151 TCGTTCCCCTCGATCCAAAA 59.022 50.000 0.00 0.00 32.30 2.44
535 536 1.348366 TCGTTCCCCTCGATCCAAAAA 59.652 47.619 0.00 0.00 32.30 1.94
560 561 3.608316 AAAAAGAAAACACTGCCTGCA 57.392 38.095 0.00 0.00 0.00 4.41
561 562 3.825143 AAAAGAAAACACTGCCTGCAT 57.175 38.095 0.00 0.00 0.00 3.96
562 563 4.935352 AAAAGAAAACACTGCCTGCATA 57.065 36.364 0.00 0.00 0.00 3.14
563 564 5.473066 AAAAGAAAACACTGCCTGCATAT 57.527 34.783 0.00 0.00 0.00 1.78
564 565 4.708726 AAGAAAACACTGCCTGCATATC 57.291 40.909 0.00 0.00 0.00 1.63
565 566 2.679837 AGAAAACACTGCCTGCATATCG 59.320 45.455 0.00 0.00 0.00 2.92
566 567 2.113860 AAACACTGCCTGCATATCGT 57.886 45.000 0.00 0.00 0.00 3.73
567 568 1.656652 AACACTGCCTGCATATCGTC 58.343 50.000 0.00 0.00 0.00 4.20
568 569 0.826715 ACACTGCCTGCATATCGTCT 59.173 50.000 0.00 0.00 0.00 4.18
569 570 1.208052 ACACTGCCTGCATATCGTCTT 59.792 47.619 0.00 0.00 0.00 3.01
570 571 1.863454 CACTGCCTGCATATCGTCTTC 59.137 52.381 0.00 0.00 0.00 2.87
571 572 1.135046 CTGCCTGCATATCGTCTTCG 58.865 55.000 0.00 0.00 38.55 3.79
769 771 3.240134 AATCAGTCGCCACGCTGGT 62.240 57.895 10.09 2.65 40.46 4.00
1931 1964 0.674581 TCATGAGCAGAACTTGGGCG 60.675 55.000 0.00 0.00 0.00 6.13
3113 3175 2.076803 GGCGGTTCCTATCCCCCTT 61.077 63.158 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.564110 GGTGCGGACTATGGGGGC 62.564 72.222 7.11 0.00 0.00 5.80
1 2 1.458777 TAGGTGCGGACTATGGGGG 60.459 63.158 7.11 0.00 0.00 5.40
2 3 1.746517 GTAGGTGCGGACTATGGGG 59.253 63.158 7.11 0.00 0.00 4.96
3 4 1.105167 TCGTAGGTGCGGACTATGGG 61.105 60.000 7.11 0.00 0.00 4.00
4 5 0.959553 ATCGTAGGTGCGGACTATGG 59.040 55.000 7.11 0.00 0.00 2.74
5 6 4.082949 TCAATATCGTAGGTGCGGACTATG 60.083 45.833 7.11 3.48 0.00 2.23
6 7 4.077108 TCAATATCGTAGGTGCGGACTAT 58.923 43.478 7.11 0.00 0.00 2.12
7 8 3.479489 TCAATATCGTAGGTGCGGACTA 58.521 45.455 7.11 0.00 0.00 2.59
8 9 2.304092 TCAATATCGTAGGTGCGGACT 58.696 47.619 7.11 0.00 0.00 3.85
9 10 2.787601 TCAATATCGTAGGTGCGGAC 57.212 50.000 0.00 0.00 0.00 4.79
10 11 3.649073 CAATCAATATCGTAGGTGCGGA 58.351 45.455 0.00 0.00 0.00 5.54
11 12 2.157668 GCAATCAATATCGTAGGTGCGG 59.842 50.000 0.00 0.00 0.00 5.69
12 13 2.157668 GGCAATCAATATCGTAGGTGCG 59.842 50.000 0.00 0.00 0.00 5.34
13 14 2.484264 GGGCAATCAATATCGTAGGTGC 59.516 50.000 0.00 0.00 0.00 5.01
14 15 3.074412 GGGGCAATCAATATCGTAGGTG 58.926 50.000 0.00 0.00 0.00 4.00
15 16 2.039879 GGGGGCAATCAATATCGTAGGT 59.960 50.000 0.00 0.00 0.00 3.08
16 17 2.039746 TGGGGGCAATCAATATCGTAGG 59.960 50.000 0.00 0.00 0.00 3.18
17 18 3.417069 TGGGGGCAATCAATATCGTAG 57.583 47.619 0.00 0.00 0.00 3.51
18 19 3.482436 GTTGGGGGCAATCAATATCGTA 58.518 45.455 0.00 0.00 0.00 3.43
19 20 2.306847 GTTGGGGGCAATCAATATCGT 58.693 47.619 0.00 0.00 0.00 3.73
20 21 1.266718 CGTTGGGGGCAATCAATATCG 59.733 52.381 0.00 0.00 0.00 2.92
21 22 1.613437 CCGTTGGGGGCAATCAATATC 59.387 52.381 0.00 0.00 0.00 1.63
22 23 1.063266 ACCGTTGGGGGCAATCAATAT 60.063 47.619 0.00 0.00 41.60 1.28
23 24 0.333312 ACCGTTGGGGGCAATCAATA 59.667 50.000 0.00 0.00 41.60 1.90
24 25 0.970427 GACCGTTGGGGGCAATCAAT 60.970 55.000 0.00 0.00 46.58 2.57
25 26 1.605165 GACCGTTGGGGGCAATCAA 60.605 57.895 0.00 0.00 46.58 2.57
26 27 2.034999 GACCGTTGGGGGCAATCA 59.965 61.111 0.00 0.00 46.58 2.57
31 32 0.475044 TAATATGGACCGTTGGGGGC 59.525 55.000 0.00 0.00 46.65 5.80
32 33 1.772453 AGTAATATGGACCGTTGGGGG 59.228 52.381 0.00 0.00 41.60 5.40
33 34 3.473625 GAAGTAATATGGACCGTTGGGG 58.526 50.000 0.00 0.00 43.62 4.96
34 35 3.135895 AGGAAGTAATATGGACCGTTGGG 59.864 47.826 0.00 0.00 40.11 4.12
35 36 4.377897 GAGGAAGTAATATGGACCGTTGG 58.622 47.826 0.00 0.00 0.00 3.77
36 37 4.141801 TGGAGGAAGTAATATGGACCGTTG 60.142 45.833 0.00 0.00 0.00 4.10
37 38 4.035112 TGGAGGAAGTAATATGGACCGTT 58.965 43.478 0.00 0.00 0.00 4.44
38 39 3.649843 TGGAGGAAGTAATATGGACCGT 58.350 45.455 0.00 0.00 0.00 4.83
39 40 4.891992 ATGGAGGAAGTAATATGGACCG 57.108 45.455 0.00 0.00 0.00 4.79
40 41 6.601332 TGAAATGGAGGAAGTAATATGGACC 58.399 40.000 0.00 0.00 0.00 4.46
41 42 7.283329 ACTGAAATGGAGGAAGTAATATGGAC 58.717 38.462 0.00 0.00 0.00 4.02
42 43 7.451731 ACTGAAATGGAGGAAGTAATATGGA 57.548 36.000 0.00 0.00 0.00 3.41
43 44 8.525290 AAACTGAAATGGAGGAAGTAATATGG 57.475 34.615 0.00 0.00 0.00 2.74
47 48 8.934023 TTGTAAACTGAAATGGAGGAAGTAAT 57.066 30.769 0.00 0.00 0.00 1.89
48 49 7.996644 ACTTGTAAACTGAAATGGAGGAAGTAA 59.003 33.333 0.00 0.00 0.00 2.24
49 50 7.514721 ACTTGTAAACTGAAATGGAGGAAGTA 58.485 34.615 0.00 0.00 0.00 2.24
50 51 6.365520 ACTTGTAAACTGAAATGGAGGAAGT 58.634 36.000 0.00 0.00 0.00 3.01
51 52 6.072452 GGACTTGTAAACTGAAATGGAGGAAG 60.072 42.308 0.00 0.00 0.00 3.46
52 53 5.768164 GGACTTGTAAACTGAAATGGAGGAA 59.232 40.000 0.00 0.00 0.00 3.36
53 54 5.073144 AGGACTTGTAAACTGAAATGGAGGA 59.927 40.000 0.00 0.00 0.00 3.71
54 55 5.316987 AGGACTTGTAAACTGAAATGGAGG 58.683 41.667 0.00 0.00 0.00 4.30
55 56 6.090898 CGTAGGACTTGTAAACTGAAATGGAG 59.909 42.308 0.00 0.00 0.00 3.86
56 57 5.929992 CGTAGGACTTGTAAACTGAAATGGA 59.070 40.000 0.00 0.00 0.00 3.41
57 58 5.390567 GCGTAGGACTTGTAAACTGAAATGG 60.391 44.000 0.00 0.00 0.00 3.16
58 59 5.618561 GCGTAGGACTTGTAAACTGAAATG 58.381 41.667 0.00 0.00 0.00 2.32
59 60 4.387862 CGCGTAGGACTTGTAAACTGAAAT 59.612 41.667 0.00 0.00 0.00 2.17
60 61 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
61 62 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
62 63 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
63 64 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
64 65 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
65 66 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
66 67 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
67 68 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
68 69 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
69 70 2.648059 AGGTATACGCGTAGGACTTGT 58.352 47.619 24.78 8.30 0.00 3.16
70 71 3.188048 CCTAGGTATACGCGTAGGACTTG 59.812 52.174 24.78 19.23 45.08 3.16
71 72 3.181450 ACCTAGGTATACGCGTAGGACTT 60.181 47.826 25.95 21.88 45.08 3.01
72 73 2.370189 ACCTAGGTATACGCGTAGGACT 59.630 50.000 25.95 22.11 45.08 3.85
73 74 2.772287 ACCTAGGTATACGCGTAGGAC 58.228 52.381 25.95 22.99 45.08 3.85
74 75 3.141398 CAACCTAGGTATACGCGTAGGA 58.859 50.000 25.95 14.03 45.08 2.94
75 76 2.880890 ACAACCTAGGTATACGCGTAGG 59.119 50.000 24.78 21.85 46.64 3.18
76 77 3.561310 TGACAACCTAGGTATACGCGTAG 59.439 47.826 24.78 11.28 0.00 3.51
77 78 3.540617 TGACAACCTAGGTATACGCGTA 58.459 45.455 22.94 22.94 0.00 4.42
78 79 2.368439 TGACAACCTAGGTATACGCGT 58.632 47.619 19.17 19.17 0.00 6.01
79 80 3.425577 TTGACAACCTAGGTATACGCG 57.574 47.619 16.67 3.53 0.00 6.01
80 81 6.673154 AAAATTGACAACCTAGGTATACGC 57.327 37.500 16.67 4.11 0.00 4.42
81 82 9.537192 TGATAAAATTGACAACCTAGGTATACG 57.463 33.333 16.67 6.92 0.00 3.06
83 84 9.841295 GGTGATAAAATTGACAACCTAGGTATA 57.159 33.333 16.67 0.00 0.00 1.47
84 85 7.778382 GGGTGATAAAATTGACAACCTAGGTAT 59.222 37.037 16.67 6.57 37.18 2.73
85 86 7.037153 AGGGTGATAAAATTGACAACCTAGGTA 60.037 37.037 16.67 0.00 46.75 3.08
86 87 5.949952 GGGTGATAAAATTGACAACCTAGGT 59.050 40.000 9.21 9.21 37.18 3.08
87 88 6.187682 AGGGTGATAAAATTGACAACCTAGG 58.812 40.000 7.41 7.41 46.75 3.02
137 138 9.958180 TCAGATGTTCTATTTTCAAATGGTCTA 57.042 29.630 0.00 0.00 0.00 2.59
138 139 8.868522 TCAGATGTTCTATTTTCAAATGGTCT 57.131 30.769 0.00 0.00 0.00 3.85
139 140 9.565213 CTTCAGATGTTCTATTTTCAAATGGTC 57.435 33.333 0.00 0.00 0.00 4.02
140 141 9.082313 ACTTCAGATGTTCTATTTTCAAATGGT 57.918 29.630 0.00 0.00 0.00 3.55
141 142 9.918630 AACTTCAGATGTTCTATTTTCAAATGG 57.081 29.630 0.00 0.00 0.00 3.16
184 185 9.733556 CCAAACTAATACAGGCCATATATTACA 57.266 33.333 5.01 0.00 0.00 2.41
185 186 9.734984 ACCAAACTAATACAGGCCATATATTAC 57.265 33.333 5.01 0.00 0.00 1.89
186 187 9.953565 GACCAAACTAATACAGGCCATATATTA 57.046 33.333 5.01 9.13 0.00 0.98
187 188 8.444783 TGACCAAACTAATACAGGCCATATATT 58.555 33.333 5.01 8.41 0.00 1.28
188 189 7.984475 TGACCAAACTAATACAGGCCATATAT 58.016 34.615 5.01 0.00 0.00 0.86
189 190 7.381789 TGACCAAACTAATACAGGCCATATA 57.618 36.000 5.01 0.00 0.00 0.86
190 191 6.260700 TGACCAAACTAATACAGGCCATAT 57.739 37.500 5.01 0.00 0.00 1.78
191 192 5.702065 TGACCAAACTAATACAGGCCATA 57.298 39.130 5.01 0.00 0.00 2.74
192 193 4.584638 TGACCAAACTAATACAGGCCAT 57.415 40.909 5.01 0.00 0.00 4.40
193 194 4.374689 TTGACCAAACTAATACAGGCCA 57.625 40.909 5.01 0.00 0.00 5.36
194 195 5.914898 ATTTGACCAAACTAATACAGGCC 57.085 39.130 0.00 0.00 32.51 5.19
195 196 6.806739 GTCAATTTGACCAAACTAATACAGGC 59.193 38.462 17.07 0.00 41.37 4.85
196 197 7.881142 TGTCAATTTGACCAAACTAATACAGG 58.119 34.615 23.22 0.00 46.40 4.00
197 198 9.180678 GTTGTCAATTTGACCAAACTAATACAG 57.819 33.333 23.22 0.00 46.40 2.74
198 199 8.138712 GGTTGTCAATTTGACCAAACTAATACA 58.861 33.333 23.22 1.78 46.40 2.29
199 200 8.357402 AGGTTGTCAATTTGACCAAACTAATAC 58.643 33.333 23.22 10.67 46.40 1.89
200 201 8.472007 AGGTTGTCAATTTGACCAAACTAATA 57.528 30.769 23.22 2.31 46.40 0.98
201 202 7.360113 AGGTTGTCAATTTGACCAAACTAAT 57.640 32.000 23.22 11.22 46.40 1.73
202 203 6.783708 AGGTTGTCAATTTGACCAAACTAA 57.216 33.333 23.22 9.65 46.40 2.24
203 204 6.488683 CCTAGGTTGTCAATTTGACCAAACTA 59.511 38.462 23.22 23.20 46.40 2.24
204 205 5.301805 CCTAGGTTGTCAATTTGACCAAACT 59.698 40.000 23.22 23.29 46.40 2.66
205 206 5.508994 CCCTAGGTTGTCAATTTGACCAAAC 60.509 44.000 23.22 20.24 46.40 2.93
206 207 4.586841 CCCTAGGTTGTCAATTTGACCAAA 59.413 41.667 23.22 11.54 46.40 3.28
207 208 4.148838 CCCTAGGTTGTCAATTTGACCAA 58.851 43.478 23.22 15.47 46.40 3.67
208 209 3.499563 CCCCTAGGTTGTCAATTTGACCA 60.500 47.826 23.22 12.38 46.40 4.02
209 210 3.089284 CCCCTAGGTTGTCAATTTGACC 58.911 50.000 23.22 11.44 46.40 4.02
223 224 4.564116 CGTGCGCGTACCCCTAGG 62.564 72.222 21.71 0.06 40.04 3.02
230 231 1.888958 TTTACAAGGCGTGCGCGTAC 61.889 55.000 22.18 17.94 43.06 3.67
231 232 1.664017 TTTACAAGGCGTGCGCGTA 60.664 52.632 22.18 0.00 43.06 4.42
232 233 2.968156 TTTACAAGGCGTGCGCGT 60.968 55.556 22.18 8.25 43.06 6.01
233 234 2.498887 GTTTACAAGGCGTGCGCG 60.499 61.111 16.86 16.86 43.06 6.86
234 235 1.440353 CAGTTTACAAGGCGTGCGC 60.440 57.895 8.17 8.17 41.06 6.09
235 236 0.163788 CTCAGTTTACAAGGCGTGCG 59.836 55.000 0.00 0.00 0.00 5.34
236 237 1.461127 CTCTCAGTTTACAAGGCGTGC 59.539 52.381 0.00 0.00 0.00 5.34
237 238 2.069273 CCTCTCAGTTTACAAGGCGTG 58.931 52.381 0.00 0.00 0.00 5.34
238 239 1.002087 CCCTCTCAGTTTACAAGGCGT 59.998 52.381 0.00 0.00 0.00 5.68
239 240 1.275291 TCCCTCTCAGTTTACAAGGCG 59.725 52.381 0.00 0.00 0.00 5.52
240 241 2.355209 CCTCCCTCTCAGTTTACAAGGC 60.355 54.545 0.00 0.00 0.00 4.35
241 242 2.237392 CCCTCCCTCTCAGTTTACAAGG 59.763 54.545 0.00 0.00 0.00 3.61
242 243 3.173965 TCCCTCCCTCTCAGTTTACAAG 58.826 50.000 0.00 0.00 0.00 3.16
243 244 3.173965 CTCCCTCCCTCTCAGTTTACAA 58.826 50.000 0.00 0.00 0.00 2.41
244 245 2.111972 ACTCCCTCCCTCTCAGTTTACA 59.888 50.000 0.00 0.00 0.00 2.41
245 246 2.822697 ACTCCCTCCCTCTCAGTTTAC 58.177 52.381 0.00 0.00 0.00 2.01
246 247 3.335786 TGTACTCCCTCCCTCTCAGTTTA 59.664 47.826 0.00 0.00 0.00 2.01
247 248 2.111972 TGTACTCCCTCCCTCTCAGTTT 59.888 50.000 0.00 0.00 0.00 2.66
248 249 1.717077 TGTACTCCCTCCCTCTCAGTT 59.283 52.381 0.00 0.00 0.00 3.16
249 250 1.383963 TGTACTCCCTCCCTCTCAGT 58.616 55.000 0.00 0.00 0.00 3.41
250 251 2.534042 TTGTACTCCCTCCCTCTCAG 57.466 55.000 0.00 0.00 0.00 3.35
251 252 3.491766 AATTGTACTCCCTCCCTCTCA 57.508 47.619 0.00 0.00 0.00 3.27
252 253 4.963628 AGTAAATTGTACTCCCTCCCTCTC 59.036 45.833 0.00 0.00 0.00 3.20
253 254 4.961585 AGTAAATTGTACTCCCTCCCTCT 58.038 43.478 0.00 0.00 0.00 3.69
254 255 4.202131 CGAGTAAATTGTACTCCCTCCCTC 60.202 50.000 8.18 0.00 40.48 4.30
255 256 3.705072 CGAGTAAATTGTACTCCCTCCCT 59.295 47.826 8.18 0.00 40.48 4.20
256 257 3.450096 ACGAGTAAATTGTACTCCCTCCC 59.550 47.826 8.18 0.00 40.48 4.30
257 258 4.732672 ACGAGTAAATTGTACTCCCTCC 57.267 45.455 8.18 0.00 40.48 4.30
258 259 8.164058 AGTATACGAGTAAATTGTACTCCCTC 57.836 38.462 8.18 0.00 40.48 4.30
259 260 9.804977 ATAGTATACGAGTAAATTGTACTCCCT 57.195 33.333 8.18 0.00 40.48 4.20
287 288 9.880157 GGTGTTTGGACATTTTCTATACTACTA 57.120 33.333 0.00 0.00 38.23 1.82
288 289 8.603304 AGGTGTTTGGACATTTTCTATACTACT 58.397 33.333 0.00 0.00 38.23 2.57
289 290 8.788325 AGGTGTTTGGACATTTTCTATACTAC 57.212 34.615 0.00 0.00 38.23 2.73
290 291 9.226606 CAAGGTGTTTGGACATTTTCTATACTA 57.773 33.333 0.00 0.00 38.23 1.82
291 292 7.942341 TCAAGGTGTTTGGACATTTTCTATACT 59.058 33.333 0.00 0.00 38.23 2.12
292 293 8.106247 TCAAGGTGTTTGGACATTTTCTATAC 57.894 34.615 0.00 0.00 38.23 1.47
293 294 8.698973 TTCAAGGTGTTTGGACATTTTCTATA 57.301 30.769 0.00 0.00 38.23 1.31
294 295 7.595819 TTCAAGGTGTTTGGACATTTTCTAT 57.404 32.000 0.00 0.00 38.23 1.98
295 296 7.411486 TTTCAAGGTGTTTGGACATTTTCTA 57.589 32.000 0.00 0.00 38.23 2.10
296 297 5.930837 TTCAAGGTGTTTGGACATTTTCT 57.069 34.783 0.00 0.00 38.23 2.52
297 298 7.495606 AGAATTTCAAGGTGTTTGGACATTTTC 59.504 33.333 0.00 0.00 38.23 2.29
298 299 7.280652 CAGAATTTCAAGGTGTTTGGACATTTT 59.719 33.333 0.00 0.00 38.23 1.82
299 300 6.762661 CAGAATTTCAAGGTGTTTGGACATTT 59.237 34.615 0.00 0.00 38.23 2.32
300 301 6.282930 CAGAATTTCAAGGTGTTTGGACATT 58.717 36.000 0.00 0.00 38.23 2.71
301 302 5.739935 GCAGAATTTCAAGGTGTTTGGACAT 60.740 40.000 0.00 0.00 38.23 3.06
302 303 4.441356 GCAGAATTTCAAGGTGTTTGGACA 60.441 41.667 0.00 0.00 37.39 4.02
303 304 4.051237 GCAGAATTTCAAGGTGTTTGGAC 58.949 43.478 0.00 0.00 37.39 4.02
304 305 3.703556 TGCAGAATTTCAAGGTGTTTGGA 59.296 39.130 0.00 0.00 37.39 3.53
305 306 4.057406 TGCAGAATTTCAAGGTGTTTGG 57.943 40.909 0.00 0.00 37.39 3.28
306 307 5.050634 CACATGCAGAATTTCAAGGTGTTTG 60.051 40.000 0.00 0.00 38.17 2.93
307 308 5.051816 CACATGCAGAATTTCAAGGTGTTT 58.948 37.500 0.00 0.00 0.00 2.83
308 309 4.624015 CACATGCAGAATTTCAAGGTGTT 58.376 39.130 0.00 0.00 0.00 3.32
309 310 3.553508 GCACATGCAGAATTTCAAGGTGT 60.554 43.478 0.00 0.00 41.59 4.16
310 311 2.991190 GCACATGCAGAATTTCAAGGTG 59.009 45.455 0.00 3.70 41.59 4.00
311 312 2.028748 GGCACATGCAGAATTTCAAGGT 60.029 45.455 6.15 0.00 44.36 3.50
312 313 2.232941 AGGCACATGCAGAATTTCAAGG 59.767 45.455 6.15 0.00 44.36 3.61
313 314 3.587797 AGGCACATGCAGAATTTCAAG 57.412 42.857 6.15 0.00 44.36 3.02
314 315 4.334552 TCTAGGCACATGCAGAATTTCAA 58.665 39.130 6.15 0.00 44.36 2.69
315 316 3.954200 TCTAGGCACATGCAGAATTTCA 58.046 40.909 6.15 0.00 44.36 2.69
316 317 4.637534 TCTTCTAGGCACATGCAGAATTTC 59.362 41.667 6.15 0.00 44.36 2.17
317 318 4.592942 TCTTCTAGGCACATGCAGAATTT 58.407 39.130 6.15 0.00 44.36 1.82
318 319 4.226427 TCTTCTAGGCACATGCAGAATT 57.774 40.909 6.15 0.00 44.36 2.17
319 320 3.920231 TCTTCTAGGCACATGCAGAAT 57.080 42.857 6.15 0.00 44.36 2.40
320 321 3.920231 ATCTTCTAGGCACATGCAGAA 57.080 42.857 6.15 6.36 44.36 3.02
321 322 3.453717 AGAATCTTCTAGGCACATGCAGA 59.546 43.478 6.15 0.00 38.15 4.26
322 323 3.806380 AGAATCTTCTAGGCACATGCAG 58.194 45.455 6.15 0.00 38.15 4.41
323 324 3.801698 GAGAATCTTCTAGGCACATGCA 58.198 45.455 6.15 0.00 39.34 3.96
390 391 9.337091 CCGACGAACAATACATTTAAAGAAAAT 57.663 29.630 0.00 0.00 38.36 1.82
391 392 8.557864 TCCGACGAACAATACATTTAAAGAAAA 58.442 29.630 0.00 0.00 0.00 2.29
392 393 8.085720 TCCGACGAACAATACATTTAAAGAAA 57.914 30.769 0.00 0.00 0.00 2.52
393 394 7.655236 TCCGACGAACAATACATTTAAAGAA 57.345 32.000 0.00 0.00 0.00 2.52
394 395 7.675403 GCATCCGACGAACAATACATTTAAAGA 60.675 37.037 0.00 0.00 0.00 2.52
395 396 6.410914 GCATCCGACGAACAATACATTTAAAG 59.589 38.462 0.00 0.00 0.00 1.85
396 397 6.128254 TGCATCCGACGAACAATACATTTAAA 60.128 34.615 0.00 0.00 0.00 1.52
397 398 5.351740 TGCATCCGACGAACAATACATTTAA 59.648 36.000 0.00 0.00 0.00 1.52
398 399 4.870991 TGCATCCGACGAACAATACATTTA 59.129 37.500 0.00 0.00 0.00 1.40
399 400 3.687212 TGCATCCGACGAACAATACATTT 59.313 39.130 0.00 0.00 0.00 2.32
400 401 3.266636 TGCATCCGACGAACAATACATT 58.733 40.909 0.00 0.00 0.00 2.71
401 402 2.866156 CTGCATCCGACGAACAATACAT 59.134 45.455 0.00 0.00 0.00 2.29
402 403 2.094442 TCTGCATCCGACGAACAATACA 60.094 45.455 0.00 0.00 0.00 2.29
403 404 2.281762 GTCTGCATCCGACGAACAATAC 59.718 50.000 0.00 0.00 0.00 1.89
404 405 2.536365 GTCTGCATCCGACGAACAATA 58.464 47.619 0.00 0.00 0.00 1.90
405 406 1.359848 GTCTGCATCCGACGAACAAT 58.640 50.000 0.00 0.00 0.00 2.71
406 407 0.669318 GGTCTGCATCCGACGAACAA 60.669 55.000 0.00 0.00 32.24 2.83
407 408 1.080093 GGTCTGCATCCGACGAACA 60.080 57.895 0.00 0.00 32.24 3.18
408 409 1.810030 GGGTCTGCATCCGACGAAC 60.810 63.158 0.00 0.00 32.24 3.95
409 410 1.982395 AGGGTCTGCATCCGACGAA 60.982 57.895 0.00 0.00 32.24 3.85
410 411 2.362503 AGGGTCTGCATCCGACGA 60.363 61.111 0.00 0.00 32.24 4.20
411 412 2.202797 CAGGGTCTGCATCCGACG 60.203 66.667 0.00 0.00 32.24 5.12
420 421 0.617413 AGAAGGTGATGCAGGGTCTG 59.383 55.000 0.00 0.00 34.12 3.51
421 422 2.254152 TAGAAGGTGATGCAGGGTCT 57.746 50.000 0.00 0.00 0.00 3.85
422 423 3.209410 CATTAGAAGGTGATGCAGGGTC 58.791 50.000 0.00 0.00 0.00 4.46
423 424 2.092212 CCATTAGAAGGTGATGCAGGGT 60.092 50.000 0.00 0.00 0.00 4.34
424 425 2.579873 CCATTAGAAGGTGATGCAGGG 58.420 52.381 0.00 0.00 0.00 4.45
425 426 2.579873 CCCATTAGAAGGTGATGCAGG 58.420 52.381 0.00 0.00 0.00 4.85
426 427 1.952296 GCCCATTAGAAGGTGATGCAG 59.048 52.381 0.00 0.00 0.00 4.41
427 428 1.565759 AGCCCATTAGAAGGTGATGCA 59.434 47.619 0.00 0.00 0.00 3.96
428 429 2.355010 AGCCCATTAGAAGGTGATGC 57.645 50.000 0.00 0.00 0.00 3.91
429 430 3.809832 CGTAAGCCCATTAGAAGGTGATG 59.190 47.826 0.00 0.00 0.00 3.07
430 431 3.181454 CCGTAAGCCCATTAGAAGGTGAT 60.181 47.826 0.00 0.00 0.00 3.06
431 432 2.169769 CCGTAAGCCCATTAGAAGGTGA 59.830 50.000 0.00 0.00 0.00 4.02
432 433 2.561569 CCGTAAGCCCATTAGAAGGTG 58.438 52.381 0.00 0.00 0.00 4.00
433 434 1.134189 GCCGTAAGCCCATTAGAAGGT 60.134 52.381 0.00 0.00 34.35 3.50
434 435 1.141053 AGCCGTAAGCCCATTAGAAGG 59.859 52.381 0.00 0.00 45.47 3.46
435 436 2.213499 CAGCCGTAAGCCCATTAGAAG 58.787 52.381 0.00 0.00 45.47 2.85
436 437 1.557832 ACAGCCGTAAGCCCATTAGAA 59.442 47.619 0.00 0.00 45.47 2.10
437 438 1.200519 ACAGCCGTAAGCCCATTAGA 58.799 50.000 0.00 0.00 45.47 2.10
438 439 1.940613 GAACAGCCGTAAGCCCATTAG 59.059 52.381 0.00 0.00 45.47 1.73
439 440 1.741055 CGAACAGCCGTAAGCCCATTA 60.741 52.381 0.00 0.00 45.47 1.90
440 441 1.024579 CGAACAGCCGTAAGCCCATT 61.025 55.000 0.00 0.00 45.47 3.16
441 442 1.449601 CGAACAGCCGTAAGCCCAT 60.450 57.895 0.00 0.00 45.47 4.00
442 443 2.047655 CGAACAGCCGTAAGCCCA 60.048 61.111 0.00 0.00 45.47 5.36
443 444 2.229690 TACCGAACAGCCGTAAGCCC 62.230 60.000 0.00 0.00 45.47 5.19
444 445 0.804933 CTACCGAACAGCCGTAAGCC 60.805 60.000 0.00 0.00 45.47 4.35
445 446 0.108945 ACTACCGAACAGCCGTAAGC 60.109 55.000 0.00 0.00 44.25 3.09
446 447 1.468736 GGACTACCGAACAGCCGTAAG 60.469 57.143 0.00 0.00 0.00 2.34
447 448 0.527565 GGACTACCGAACAGCCGTAA 59.472 55.000 0.00 0.00 0.00 3.18
448 449 0.322816 AGGACTACCGAACAGCCGTA 60.323 55.000 0.00 0.00 41.83 4.02
449 450 1.605738 AGGACTACCGAACAGCCGT 60.606 57.895 0.00 0.00 41.83 5.68
450 451 1.153823 CAGGACTACCGAACAGCCG 60.154 63.158 0.00 0.00 41.83 5.52
451 452 1.218316 CCAGGACTACCGAACAGCC 59.782 63.158 0.00 0.00 41.83 4.85
452 453 1.218316 CCCAGGACTACCGAACAGC 59.782 63.158 0.00 0.00 41.83 4.40
453 454 1.218316 GCCCAGGACTACCGAACAG 59.782 63.158 0.00 0.00 41.83 3.16
454 455 2.288025 GGCCCAGGACTACCGAACA 61.288 63.158 0.00 0.00 41.83 3.18
455 456 0.685458 TAGGCCCAGGACTACCGAAC 60.685 60.000 0.00 0.00 41.83 3.95
456 457 0.396695 CTAGGCCCAGGACTACCGAA 60.397 60.000 0.00 0.00 41.83 4.30
457 458 1.229359 CTAGGCCCAGGACTACCGA 59.771 63.158 0.00 0.00 41.83 4.69
458 459 2.499827 GCTAGGCCCAGGACTACCG 61.500 68.421 0.00 0.00 41.83 4.02
459 460 1.382695 TGCTAGGCCCAGGACTACC 60.383 63.158 0.00 0.00 34.01 3.18
460 461 2.128729 CTGCTAGGCCCAGGACTAC 58.871 63.158 0.00 0.00 34.01 2.73
461 462 4.707584 CTGCTAGGCCCAGGACTA 57.292 61.111 0.00 0.00 34.01 2.59
471 472 2.972892 GAATGCCCAGGCCTGCTAGG 62.973 65.000 28.39 23.28 41.09 3.02
472 473 1.527844 GAATGCCCAGGCCTGCTAG 60.528 63.158 28.39 18.30 41.09 3.42
473 474 2.597340 GAATGCCCAGGCCTGCTA 59.403 61.111 28.39 15.34 41.09 3.49
474 475 4.809496 CGAATGCCCAGGCCTGCT 62.809 66.667 28.39 8.37 41.09 4.24
476 477 2.891941 TTAGCGAATGCCCAGGCCTG 62.892 60.000 26.87 26.87 44.31 4.85
477 478 2.679342 TTAGCGAATGCCCAGGCCT 61.679 57.895 0.00 0.00 44.31 5.19
478 479 2.124320 TTAGCGAATGCCCAGGCC 60.124 61.111 6.14 0.00 44.31 5.19
479 480 2.481471 GGTTAGCGAATGCCCAGGC 61.481 63.158 0.38 0.38 44.31 4.85
480 481 0.466189 ATGGTTAGCGAATGCCCAGG 60.466 55.000 0.00 0.00 44.31 4.45
481 482 1.873591 GTATGGTTAGCGAATGCCCAG 59.126 52.381 0.00 0.00 44.31 4.45
482 483 1.210722 TGTATGGTTAGCGAATGCCCA 59.789 47.619 0.00 0.00 44.31 5.36
483 484 1.602377 GTGTATGGTTAGCGAATGCCC 59.398 52.381 0.00 0.00 44.31 5.36
484 485 2.031683 GTGTGTATGGTTAGCGAATGCC 59.968 50.000 0.00 0.00 44.31 4.40
485 486 2.675844 TGTGTGTATGGTTAGCGAATGC 59.324 45.455 0.00 0.00 43.24 3.56
486 487 3.932710 AGTGTGTGTATGGTTAGCGAATG 59.067 43.478 0.00 0.00 0.00 2.67
487 488 3.932710 CAGTGTGTGTATGGTTAGCGAAT 59.067 43.478 0.00 0.00 0.00 3.34
488 489 3.322369 CAGTGTGTGTATGGTTAGCGAA 58.678 45.455 0.00 0.00 0.00 4.70
489 490 2.929161 GCAGTGTGTGTATGGTTAGCGA 60.929 50.000 0.00 0.00 0.00 4.93
490 491 1.393539 GCAGTGTGTGTATGGTTAGCG 59.606 52.381 0.00 0.00 0.00 4.26
491 492 1.737793 GGCAGTGTGTGTATGGTTAGC 59.262 52.381 0.00 0.00 0.00 3.09
492 493 3.262420 GAGGCAGTGTGTGTATGGTTAG 58.738 50.000 0.00 0.00 0.00 2.34
493 494 2.353307 CGAGGCAGTGTGTGTATGGTTA 60.353 50.000 0.00 0.00 0.00 2.85
494 495 1.608025 CGAGGCAGTGTGTGTATGGTT 60.608 52.381 0.00 0.00 0.00 3.67
495 496 0.037326 CGAGGCAGTGTGTGTATGGT 60.037 55.000 0.00 0.00 0.00 3.55
496 497 0.037326 ACGAGGCAGTGTGTGTATGG 60.037 55.000 0.00 0.00 0.00 2.74
497 498 1.350193 GACGAGGCAGTGTGTGTATG 58.650 55.000 0.00 0.00 0.00 2.39
498 499 0.109272 CGACGAGGCAGTGTGTGTAT 60.109 55.000 0.00 0.00 0.00 2.29
499 500 1.284715 CGACGAGGCAGTGTGTGTA 59.715 57.895 0.00 0.00 0.00 2.90
500 501 2.027605 CGACGAGGCAGTGTGTGT 59.972 61.111 0.00 0.00 0.00 3.72
501 502 1.548973 GAACGACGAGGCAGTGTGTG 61.549 60.000 0.00 0.00 0.00 3.82
502 503 1.299926 GAACGACGAGGCAGTGTGT 60.300 57.895 0.00 0.00 0.00 3.72
503 504 2.022129 GGAACGACGAGGCAGTGTG 61.022 63.158 0.00 0.00 0.00 3.82
504 505 2.338984 GGAACGACGAGGCAGTGT 59.661 61.111 0.00 0.00 0.00 3.55
505 506 2.432628 GGGAACGACGAGGCAGTG 60.433 66.667 0.00 0.00 0.00 3.66
506 507 3.692406 GGGGAACGACGAGGCAGT 61.692 66.667 0.00 0.00 0.00 4.40
507 508 3.358076 GAGGGGAACGACGAGGCAG 62.358 68.421 0.00 0.00 0.00 4.85
508 509 3.379445 GAGGGGAACGACGAGGCA 61.379 66.667 0.00 0.00 0.00 4.75
509 510 4.493747 CGAGGGGAACGACGAGGC 62.494 72.222 0.00 0.00 0.00 4.70
510 511 2.061182 GATCGAGGGGAACGACGAGG 62.061 65.000 0.00 0.00 42.37 4.63
511 512 1.355916 GATCGAGGGGAACGACGAG 59.644 63.158 0.00 0.00 42.37 4.18
512 513 2.117156 GGATCGAGGGGAACGACGA 61.117 63.158 0.00 0.00 42.37 4.20
513 514 1.940883 TTGGATCGAGGGGAACGACG 61.941 60.000 0.00 0.00 42.37 5.12
514 515 0.248289 TTTGGATCGAGGGGAACGAC 59.752 55.000 0.00 0.00 42.37 4.34
515 516 0.978151 TTTTGGATCGAGGGGAACGA 59.022 50.000 0.00 0.00 43.65 3.85
516 517 1.816074 TTTTTGGATCGAGGGGAACG 58.184 50.000 0.00 0.00 0.00 3.95
540 541 3.608316 TGCAGGCAGTGTTTTCTTTTT 57.392 38.095 0.00 0.00 0.00 1.94
541 542 3.825143 ATGCAGGCAGTGTTTTCTTTT 57.175 38.095 0.00 0.00 0.00 2.27
542 543 4.379813 CGATATGCAGGCAGTGTTTTCTTT 60.380 41.667 0.00 0.00 0.00 2.52
543 544 3.127548 CGATATGCAGGCAGTGTTTTCTT 59.872 43.478 0.00 0.00 0.00 2.52
544 545 2.679837 CGATATGCAGGCAGTGTTTTCT 59.320 45.455 0.00 0.00 0.00 2.52
545 546 2.420022 ACGATATGCAGGCAGTGTTTTC 59.580 45.455 0.00 0.00 0.00 2.29
546 547 2.420022 GACGATATGCAGGCAGTGTTTT 59.580 45.455 0.00 0.00 0.00 2.43
547 548 2.009774 GACGATATGCAGGCAGTGTTT 58.990 47.619 0.00 0.00 0.00 2.83
548 549 1.208052 AGACGATATGCAGGCAGTGTT 59.792 47.619 0.00 0.00 0.00 3.32
549 550 0.826715 AGACGATATGCAGGCAGTGT 59.173 50.000 0.00 0.00 0.00 3.55
550 551 1.863454 GAAGACGATATGCAGGCAGTG 59.137 52.381 0.00 0.00 0.00 3.66
551 552 1.536922 CGAAGACGATATGCAGGCAGT 60.537 52.381 0.00 0.00 42.66 4.40
552 553 1.135046 CGAAGACGATATGCAGGCAG 58.865 55.000 0.00 0.00 42.66 4.85
553 554 0.744281 TCGAAGACGATATGCAGGCA 59.256 50.000 0.00 0.00 43.81 4.75
554 555 3.569916 TCGAAGACGATATGCAGGC 57.430 52.632 0.00 0.00 43.81 4.85
570 571 6.411630 TTTTGGTTAAATACTCGACCATCG 57.588 37.500 0.00 0.00 41.45 3.84
571 572 7.813645 AGTTTTTGGTTAAATACTCGACCATC 58.186 34.615 0.00 0.00 41.45 3.51
572 573 7.754851 AGTTTTTGGTTAAATACTCGACCAT 57.245 32.000 0.00 0.00 41.45 3.55
983 989 1.305046 ATCCTCACCTTCGACCGGT 60.305 57.895 6.92 6.92 34.38 5.28
1203 1209 5.924356 TCAGATTCAGTGTAAGAACCACAA 58.076 37.500 0.00 0.00 35.24 3.33
1931 1964 1.000843 GGCTTGTTTGTCATTCACCCC 59.999 52.381 0.00 0.00 0.00 4.95
2417 2450 1.843368 CATGACATTCCAAGGCCAGT 58.157 50.000 5.01 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.