Multiple sequence alignment - TraesCS7B01G453200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G453200 chr7B 100.000 3251 0 0 1 3251 714462544 714459294 0.000000e+00 6004.0
1 TraesCS7B01G453200 chr7B 83.443 2283 338 29 982 3243 714598296 714596033 0.000000e+00 2085.0
2 TraesCS7B01G453200 chr7B 83.613 2203 320 28 1064 3250 713458481 713456304 0.000000e+00 2030.0
3 TraesCS7B01G453200 chr7B 82.862 2264 355 28 987 3238 714301487 714299245 0.000000e+00 2001.0
4 TraesCS7B01G453200 chr7B 88.130 1230 135 9 1372 2595 714606701 714605477 0.000000e+00 1452.0
5 TraesCS7B01G453200 chr7B 83.782 1486 214 22 1773 3243 714474647 714473174 0.000000e+00 1384.0
6 TraesCS7B01G453200 chr7B 82.396 1511 214 30 1773 3240 714359662 714358161 0.000000e+00 1269.0
7 TraesCS7B01G453200 chr7B 84.971 865 118 10 956 1814 714330915 714330057 0.000000e+00 867.0
8 TraesCS7B01G453200 chr7B 82.759 812 123 12 993 1800 714360469 714359671 0.000000e+00 708.0
9 TraesCS7B01G453200 chr7B 84.270 712 96 10 1072 1780 713297929 713298627 0.000000e+00 680.0
10 TraesCS7B01G453200 chr7B 77.869 976 157 41 870 1814 714522565 714521618 4.740000e-153 551.0
11 TraesCS7B01G453200 chr7B 79.870 154 18 8 118 271 714607268 714607128 2.060000e-17 100.0
12 TraesCS7B01G453200 chr7D 88.261 2266 252 9 988 3243 619156530 619154269 0.000000e+00 2699.0
13 TraesCS7B01G453200 chr7D 83.964 2195 311 26 1072 3250 618890660 618892829 0.000000e+00 2065.0
14 TraesCS7B01G453200 chr7D 84.752 1410 194 14 889 2283 619160631 619159228 0.000000e+00 1393.0
15 TraesCS7B01G453200 chr7A 83.250 2191 334 23 1072 3250 712440914 712443083 0.000000e+00 1982.0
16 TraesCS7B01G453200 chr7A 87.449 1729 191 19 881 2595 713136143 713134427 0.000000e+00 1967.0
17 TraesCS7B01G453200 chr7A 83.546 1647 248 13 1611 3243 713122240 713120603 0.000000e+00 1519.0
18 TraesCS7B01G453200 chr7A 88.753 738 79 4 2516 3251 713105620 713104885 0.000000e+00 900.0
19 TraesCS7B01G453200 chr7A 85.465 860 114 10 944 1798 713107251 713106398 0.000000e+00 885.0
20 TraesCS7B01G453200 chr7A 84.906 636 89 6 982 1614 713127766 713127135 1.270000e-178 636.0
21 TraesCS7B01G453200 chr7A 78.351 582 91 22 893 1441 712977615 712977036 8.640000e-91 344.0
22 TraesCS7B01G453200 chr7A 88.889 63 5 2 189 251 713137889 713137829 3.480000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G453200 chr7B 714459294 714462544 3250 True 6004.0 6004 100.0000 1 3251 1 chr7B.!!$R4 3250
1 TraesCS7B01G453200 chr7B 714596033 714598296 2263 True 2085.0 2085 83.4430 982 3243 1 chr7B.!!$R7 2261
2 TraesCS7B01G453200 chr7B 713456304 713458481 2177 True 2030.0 2030 83.6130 1064 3250 1 chr7B.!!$R1 2186
3 TraesCS7B01G453200 chr7B 714299245 714301487 2242 True 2001.0 2001 82.8620 987 3238 1 chr7B.!!$R2 2251
4 TraesCS7B01G453200 chr7B 714473174 714474647 1473 True 1384.0 1384 83.7820 1773 3243 1 chr7B.!!$R5 1470
5 TraesCS7B01G453200 chr7B 714358161 714360469 2308 True 988.5 1269 82.5775 993 3240 2 chr7B.!!$R8 2247
6 TraesCS7B01G453200 chr7B 714330057 714330915 858 True 867.0 867 84.9710 956 1814 1 chr7B.!!$R3 858
7 TraesCS7B01G453200 chr7B 714605477 714607268 1791 True 776.0 1452 84.0000 118 2595 2 chr7B.!!$R9 2477
8 TraesCS7B01G453200 chr7B 713297929 713298627 698 False 680.0 680 84.2700 1072 1780 1 chr7B.!!$F1 708
9 TraesCS7B01G453200 chr7B 714521618 714522565 947 True 551.0 551 77.8690 870 1814 1 chr7B.!!$R6 944
10 TraesCS7B01G453200 chr7D 618890660 618892829 2169 False 2065.0 2065 83.9640 1072 3250 1 chr7D.!!$F1 2178
11 TraesCS7B01G453200 chr7D 619154269 619160631 6362 True 2046.0 2699 86.5065 889 3243 2 chr7D.!!$R1 2354
12 TraesCS7B01G453200 chr7A 712440914 712443083 2169 False 1982.0 1982 83.2500 1072 3250 1 chr7A.!!$F1 2178
13 TraesCS7B01G453200 chr7A 713120603 713122240 1637 True 1519.0 1519 83.5460 1611 3243 1 chr7A.!!$R2 1632
14 TraesCS7B01G453200 chr7A 713134427 713137889 3462 True 1021.9 1967 88.1690 189 2595 2 chr7A.!!$R5 2406
15 TraesCS7B01G453200 chr7A 713104885 713107251 2366 True 892.5 900 87.1090 944 3251 2 chr7A.!!$R4 2307
16 TraesCS7B01G453200 chr7A 713127135 713127766 631 True 636.0 636 84.9060 982 1614 1 chr7A.!!$R3 632
17 TraesCS7B01G453200 chr7A 712977036 712977615 579 True 344.0 344 78.3510 893 1441 1 chr7A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 1434 0.033991 AGAGAAGCTAGCGGTGAGGA 60.034 55.0 9.55 0.0 0.00 3.71 F
1499 2683 0.108186 CGGCAGACTGGTCATGCTAA 60.108 55.0 17.50 0.0 39.88 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 6980 0.473755 TCTTCTTGGAAGTGGCTGCA 59.526 50.000 0.50 0.0 0.00 4.41 R
2847 8155 2.100749 TGCTCTCGGCGAAAATGATCTA 59.899 45.455 12.13 0.0 45.43 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.462606 AAAGAAATTGTAATCCTATCGGTTCTT 57.537 29.630 0.00 0.00 34.08 2.52
28 29 8.664211 AGAAATTGTAATCCTATCGGTTCTTC 57.336 34.615 0.00 0.00 0.00 2.87
29 30 8.265055 AGAAATTGTAATCCTATCGGTTCTTCA 58.735 33.333 0.00 0.00 0.00 3.02
30 31 7.787725 AATTGTAATCCTATCGGTTCTTCAC 57.212 36.000 0.00 0.00 0.00 3.18
31 32 6.540438 TTGTAATCCTATCGGTTCTTCACT 57.460 37.500 0.00 0.00 0.00 3.41
32 33 6.540438 TGTAATCCTATCGGTTCTTCACTT 57.460 37.500 0.00 0.00 0.00 3.16
33 34 6.942976 TGTAATCCTATCGGTTCTTCACTTT 58.057 36.000 0.00 0.00 0.00 2.66
34 35 7.039882 TGTAATCCTATCGGTTCTTCACTTTC 58.960 38.462 0.00 0.00 0.00 2.62
35 36 5.941555 ATCCTATCGGTTCTTCACTTTCT 57.058 39.130 0.00 0.00 0.00 2.52
36 37 7.419711 AATCCTATCGGTTCTTCACTTTCTA 57.580 36.000 0.00 0.00 0.00 2.10
37 38 6.205101 TCCTATCGGTTCTTCACTTTCTAC 57.795 41.667 0.00 0.00 0.00 2.59
38 39 5.950549 TCCTATCGGTTCTTCACTTTCTACT 59.049 40.000 0.00 0.00 0.00 2.57
39 40 6.436532 TCCTATCGGTTCTTCACTTTCTACTT 59.563 38.462 0.00 0.00 0.00 2.24
40 41 6.531948 CCTATCGGTTCTTCACTTTCTACTTG 59.468 42.308 0.00 0.00 0.00 3.16
41 42 4.056050 TCGGTTCTTCACTTTCTACTTGC 58.944 43.478 0.00 0.00 0.00 4.01
42 43 4.058817 CGGTTCTTCACTTTCTACTTGCT 58.941 43.478 0.00 0.00 0.00 3.91
43 44 4.150804 CGGTTCTTCACTTTCTACTTGCTC 59.849 45.833 0.00 0.00 0.00 4.26
44 45 5.301555 GGTTCTTCACTTTCTACTTGCTCT 58.698 41.667 0.00 0.00 0.00 4.09
45 46 5.178438 GGTTCTTCACTTTCTACTTGCTCTG 59.822 44.000 0.00 0.00 0.00 3.35
46 47 5.791336 TCTTCACTTTCTACTTGCTCTGA 57.209 39.130 0.00 0.00 0.00 3.27
47 48 5.777802 TCTTCACTTTCTACTTGCTCTGAG 58.222 41.667 0.00 0.00 0.00 3.35
48 49 5.536538 TCTTCACTTTCTACTTGCTCTGAGA 59.463 40.000 9.28 0.00 0.00 3.27
49 50 5.384063 TCACTTTCTACTTGCTCTGAGAG 57.616 43.478 9.28 4.80 0.00 3.20
50 51 5.073428 TCACTTTCTACTTGCTCTGAGAGA 58.927 41.667 14.78 0.00 0.00 3.10
51 52 5.714333 TCACTTTCTACTTGCTCTGAGAGAT 59.286 40.000 14.78 0.00 0.00 2.75
52 53 6.210385 TCACTTTCTACTTGCTCTGAGAGATT 59.790 38.462 14.78 0.00 0.00 2.40
53 54 6.873076 CACTTTCTACTTGCTCTGAGAGATTT 59.127 38.462 14.78 0.00 0.00 2.17
54 55 7.387397 CACTTTCTACTTGCTCTGAGAGATTTT 59.613 37.037 14.78 0.00 0.00 1.82
55 56 7.602265 ACTTTCTACTTGCTCTGAGAGATTTTC 59.398 37.037 14.78 0.00 0.00 2.29
56 57 6.849085 TCTACTTGCTCTGAGAGATTTTCT 57.151 37.500 14.78 0.00 39.43 2.52
71 72 7.835634 GAGATTTTCTCGTTGGATAAGTTCT 57.164 36.000 0.00 0.00 33.35 3.01
72 73 8.257830 GAGATTTTCTCGTTGGATAAGTTCTT 57.742 34.615 0.00 0.00 33.35 2.52
73 74 9.367444 GAGATTTTCTCGTTGGATAAGTTCTTA 57.633 33.333 0.00 0.00 33.35 2.10
74 75 9.720769 AGATTTTCTCGTTGGATAAGTTCTTAA 57.279 29.630 0.00 0.00 0.00 1.85
79 80 8.842358 TCTCGTTGGATAAGTTCTTAATTTGT 57.158 30.769 0.00 0.00 0.00 2.83
80 81 9.932207 TCTCGTTGGATAAGTTCTTAATTTGTA 57.068 29.630 0.00 0.00 0.00 2.41
86 87 9.158233 TGGATAAGTTCTTAATTTGTAACTCCG 57.842 33.333 0.00 0.00 31.15 4.63
87 88 8.121086 GGATAAGTTCTTAATTTGTAACTCCGC 58.879 37.037 0.00 0.00 31.15 5.54
88 89 5.526010 AGTTCTTAATTTGTAACTCCGCG 57.474 39.130 0.00 0.00 0.00 6.46
89 90 4.390909 AGTTCTTAATTTGTAACTCCGCGG 59.609 41.667 22.12 22.12 0.00 6.46
90 91 4.191033 TCTTAATTTGTAACTCCGCGGA 57.809 40.909 29.03 29.03 0.00 5.54
91 92 4.761975 TCTTAATTTGTAACTCCGCGGAT 58.238 39.130 31.19 18.28 0.00 4.18
92 93 5.180271 TCTTAATTTGTAACTCCGCGGATT 58.820 37.500 31.19 22.03 0.00 3.01
93 94 5.292589 TCTTAATTTGTAACTCCGCGGATTC 59.707 40.000 31.19 18.61 0.00 2.52
94 95 2.459060 TTTGTAACTCCGCGGATTCA 57.541 45.000 31.19 20.92 0.00 2.57
95 96 1.717194 TTGTAACTCCGCGGATTCAC 58.283 50.000 31.19 24.47 0.00 3.18
96 97 0.604073 TGTAACTCCGCGGATTCACA 59.396 50.000 31.19 26.67 0.00 3.58
97 98 0.997196 GTAACTCCGCGGATTCACAC 59.003 55.000 31.19 17.35 0.00 3.82
98 99 0.892755 TAACTCCGCGGATTCACACT 59.107 50.000 31.19 10.24 0.00 3.55
99 100 0.034896 AACTCCGCGGATTCACACTT 59.965 50.000 31.19 3.40 0.00 3.16
100 101 0.034896 ACTCCGCGGATTCACACTTT 59.965 50.000 31.19 1.38 0.00 2.66
101 102 1.156736 CTCCGCGGATTCACACTTTT 58.843 50.000 31.19 0.00 0.00 2.27
102 103 1.535462 CTCCGCGGATTCACACTTTTT 59.465 47.619 31.19 0.00 0.00 1.94
122 123 6.594284 TTTTTATGCTCACTGATGATCTCG 57.406 37.500 0.00 0.00 33.22 4.04
126 127 2.033927 TGCTCACTGATGATCTCGCTAC 59.966 50.000 0.00 0.00 33.22 3.58
134 135 1.681538 TGATCTCGCTACTGGAGACC 58.318 55.000 0.00 0.00 42.87 3.85
136 137 2.438392 TGATCTCGCTACTGGAGACCTA 59.562 50.000 0.00 0.00 42.87 3.08
157 158 5.829924 CCTATTATTTTGCTGGGACATCACT 59.170 40.000 0.00 0.00 38.20 3.41
163 164 3.228188 TGCTGGGACATCACTTTTCTT 57.772 42.857 0.00 0.00 38.20 2.52
166 167 4.202461 TGCTGGGACATCACTTTTCTTAGT 60.202 41.667 0.00 0.00 38.20 2.24
171 172 7.386851 TGGGACATCACTTTTCTTAGTTCTAG 58.613 38.462 0.00 0.00 0.00 2.43
172 173 7.016268 TGGGACATCACTTTTCTTAGTTCTAGT 59.984 37.037 0.00 0.00 0.00 2.57
173 174 8.529476 GGGACATCACTTTTCTTAGTTCTAGTA 58.471 37.037 0.00 0.00 0.00 1.82
174 175 9.356433 GGACATCACTTTTCTTAGTTCTAGTAC 57.644 37.037 0.00 0.00 0.00 2.73
176 177 9.694137 ACATCACTTTTCTTAGTTCTAGTACAC 57.306 33.333 2.11 0.00 0.00 2.90
177 178 8.851416 CATCACTTTTCTTAGTTCTAGTACACG 58.149 37.037 2.11 0.00 0.00 4.49
178 179 7.365741 TCACTTTTCTTAGTTCTAGTACACGG 58.634 38.462 2.11 0.00 0.00 4.94
179 180 7.013655 TCACTTTTCTTAGTTCTAGTACACGGT 59.986 37.037 2.11 0.00 0.00 4.83
180 181 7.650903 CACTTTTCTTAGTTCTAGTACACGGTT 59.349 37.037 2.11 0.00 0.00 4.44
181 182 7.864882 ACTTTTCTTAGTTCTAGTACACGGTTC 59.135 37.037 2.11 0.00 0.00 3.62
182 183 5.886960 TCTTAGTTCTAGTACACGGTTCC 57.113 43.478 2.11 0.00 0.00 3.62
183 184 5.316167 TCTTAGTTCTAGTACACGGTTCCA 58.684 41.667 2.11 0.00 0.00 3.53
184 185 5.413833 TCTTAGTTCTAGTACACGGTTCCAG 59.586 44.000 2.11 0.00 0.00 3.86
185 186 2.230750 AGTTCTAGTACACGGTTCCAGC 59.769 50.000 2.11 0.00 0.00 4.85
186 187 1.913778 TCTAGTACACGGTTCCAGCA 58.086 50.000 0.00 0.00 0.00 4.41
187 188 1.542915 TCTAGTACACGGTTCCAGCAC 59.457 52.381 0.00 0.00 0.00 4.40
188 189 1.271379 CTAGTACACGGTTCCAGCACA 59.729 52.381 0.00 0.00 0.00 4.57
189 190 0.249741 AGTACACGGTTCCAGCACAC 60.250 55.000 0.00 0.00 0.00 3.82
190 191 0.531090 GTACACGGTTCCAGCACACA 60.531 55.000 0.00 0.00 0.00 3.72
191 192 0.531090 TACACGGTTCCAGCACACAC 60.531 55.000 0.00 0.00 0.00 3.82
192 193 1.817520 CACGGTTCCAGCACACACA 60.818 57.895 0.00 0.00 0.00 3.72
193 194 1.523711 ACGGTTCCAGCACACACAG 60.524 57.895 0.00 0.00 0.00 3.66
194 195 2.896801 CGGTTCCAGCACACACAGC 61.897 63.158 0.00 0.00 0.00 4.40
195 196 1.526917 GGTTCCAGCACACACAGCT 60.527 57.895 0.00 0.00 44.62 4.24
244 245 1.202639 TCACTCACGAACACAGCCAAT 60.203 47.619 0.00 0.00 0.00 3.16
247 248 1.872952 CTCACGAACACAGCCAATCAA 59.127 47.619 0.00 0.00 0.00 2.57
251 252 4.050553 CACGAACACAGCCAATCAAAATT 58.949 39.130 0.00 0.00 0.00 1.82
253 254 5.863397 CACGAACACAGCCAATCAAAATTAT 59.137 36.000 0.00 0.00 0.00 1.28
256 257 5.743636 ACACAGCCAATCAAAATTATGGT 57.256 34.783 0.00 0.00 35.34 3.55
261 262 7.980662 CACAGCCAATCAAAATTATGGTAATGA 59.019 33.333 0.00 0.00 35.34 2.57
262 263 8.538701 ACAGCCAATCAAAATTATGGTAATGAA 58.461 29.630 0.00 0.00 35.34 2.57
263 264 9.037737 CAGCCAATCAAAATTATGGTAATGAAG 57.962 33.333 0.00 0.00 35.34 3.02
272 273 9.975218 AAAATTATGGTAATGAAGACACCTAGT 57.025 29.630 0.00 0.00 33.28 2.57
275 276 8.834004 TTATGGTAATGAAGACACCTAGTACT 57.166 34.615 0.00 0.00 33.28 2.73
277 278 7.876936 TGGTAATGAAGACACCTAGTACTAG 57.123 40.000 21.11 21.11 33.28 2.57
278 279 7.408543 TGGTAATGAAGACACCTAGTACTAGT 58.591 38.462 24.84 10.57 33.28 2.57
279 280 8.551440 TGGTAATGAAGACACCTAGTACTAGTA 58.449 37.037 24.84 0.00 33.28 1.82
280 281 9.054922 GGTAATGAAGACACCTAGTACTAGTAG 57.945 40.741 24.84 19.10 0.00 2.57
281 282 9.612066 GTAATGAAGACACCTAGTACTAGTAGT 57.388 37.037 24.84 21.65 0.00 2.73
302 323 8.378565 AGTAGTACTAACCACTAGTAGTCACAA 58.621 37.037 3.61 0.00 43.11 3.33
303 324 7.684937 AGTACTAACCACTAGTAGTCACAAG 57.315 40.000 0.00 0.00 41.18 3.16
305 326 6.572167 ACTAACCACTAGTAGTCACAAGAC 57.428 41.667 0.00 0.00 39.20 3.01
321 342 3.449018 ACAAGACTCATGATTACTCGCCT 59.551 43.478 0.00 0.00 0.00 5.52
323 344 2.625790 AGACTCATGATTACTCGCCTCC 59.374 50.000 0.00 0.00 0.00 4.30
324 345 2.362397 GACTCATGATTACTCGCCTCCA 59.638 50.000 0.00 0.00 0.00 3.86
325 346 2.968574 ACTCATGATTACTCGCCTCCAT 59.031 45.455 0.00 0.00 0.00 3.41
327 348 2.300152 TCATGATTACTCGCCTCCATCC 59.700 50.000 0.00 0.00 0.00 3.51
328 349 1.048601 TGATTACTCGCCTCCATCCC 58.951 55.000 0.00 0.00 0.00 3.85
329 350 0.038159 GATTACTCGCCTCCATCCCG 60.038 60.000 0.00 0.00 0.00 5.14
330 351 0.469331 ATTACTCGCCTCCATCCCGA 60.469 55.000 0.00 0.00 0.00 5.14
334 355 2.107141 CGCCTCCATCCCGAGAAC 59.893 66.667 0.00 0.00 30.97 3.01
335 356 2.721167 CGCCTCCATCCCGAGAACA 61.721 63.158 0.00 0.00 30.97 3.18
336 357 1.144936 GCCTCCATCCCGAGAACAG 59.855 63.158 0.00 0.00 30.97 3.16
337 358 1.617947 GCCTCCATCCCGAGAACAGT 61.618 60.000 0.00 0.00 30.97 3.55
338 359 0.461961 CCTCCATCCCGAGAACAGTC 59.538 60.000 0.00 0.00 30.97 3.51
340 361 1.519455 CCATCCCGAGAACAGTCGC 60.519 63.158 0.00 0.00 38.69 5.19
341 362 1.513158 CATCCCGAGAACAGTCGCT 59.487 57.895 0.00 0.00 38.69 4.93
342 363 0.738975 CATCCCGAGAACAGTCGCTA 59.261 55.000 0.00 0.00 38.69 4.26
343 364 1.025812 ATCCCGAGAACAGTCGCTAG 58.974 55.000 0.00 0.00 38.69 3.42
345 366 1.030488 CCCGAGAACAGTCGCTAGGA 61.030 60.000 4.65 0.00 38.69 2.94
346 367 0.809385 CCGAGAACAGTCGCTAGGAA 59.191 55.000 0.00 0.00 38.69 3.36
347 368 1.202200 CCGAGAACAGTCGCTAGGAAG 60.202 57.143 0.00 0.00 38.69 3.46
348 369 1.738350 CGAGAACAGTCGCTAGGAAGA 59.262 52.381 0.00 0.00 32.22 2.87
349 370 2.223157 CGAGAACAGTCGCTAGGAAGAG 60.223 54.545 0.00 0.00 32.22 2.85
350 371 2.096248 AGAACAGTCGCTAGGAAGAGG 58.904 52.381 0.00 0.00 0.00 3.69
351 372 0.533032 AACAGTCGCTAGGAAGAGGC 59.467 55.000 0.00 0.00 0.00 4.70
352 373 1.324005 ACAGTCGCTAGGAAGAGGCC 61.324 60.000 0.00 0.00 0.00 5.19
353 374 1.000486 AGTCGCTAGGAAGAGGCCA 60.000 57.895 5.01 0.00 0.00 5.36
354 375 0.397816 AGTCGCTAGGAAGAGGCCAT 60.398 55.000 5.01 0.00 0.00 4.40
355 376 0.249657 GTCGCTAGGAAGAGGCCATG 60.250 60.000 5.01 0.00 0.00 3.66
356 377 1.070445 CGCTAGGAAGAGGCCATGG 59.930 63.158 7.63 7.63 0.00 3.66
357 378 1.228094 GCTAGGAAGAGGCCATGGC 60.228 63.158 29.47 29.47 41.06 4.40
358 379 1.070445 CTAGGAAGAGGCCATGGCG 59.930 63.158 29.90 9.36 43.06 5.69
359 380 3.106986 TAGGAAGAGGCCATGGCGC 62.107 63.158 29.90 23.34 43.06 6.53
360 381 4.496336 GGAAGAGGCCATGGCGCT 62.496 66.667 29.90 26.07 43.06 5.92
361 382 3.207669 GAAGAGGCCATGGCGCTG 61.208 66.667 29.90 0.00 38.33 5.18
363 384 3.984193 AAGAGGCCATGGCGCTGTC 62.984 63.158 29.90 21.75 38.33 3.51
364 385 4.783621 GAGGCCATGGCGCTGTCA 62.784 66.667 29.90 0.00 43.06 3.58
365 386 4.349503 AGGCCATGGCGCTGTCAA 62.350 61.111 29.90 0.00 43.06 3.18
367 388 3.058160 GCCATGGCGCTGTCAAGT 61.058 61.111 23.48 0.00 0.00 3.16
368 389 2.872557 CCATGGCGCTGTCAAGTG 59.127 61.111 7.64 0.00 36.97 3.16
388 444 2.202272 CCGTCGTCGTCCTCGTTC 60.202 66.667 0.71 0.00 38.33 3.95
389 445 2.570068 CGTCGTCGTCCTCGTTCG 60.570 66.667 0.00 0.00 38.33 3.95
390 446 2.553268 GTCGTCGTCCTCGTTCGT 59.447 61.111 0.00 0.00 37.07 3.85
392 455 2.570068 CGTCGTCCTCGTTCGTCG 60.570 66.667 0.00 0.00 41.41 5.12
394 457 3.425713 TCGTCCTCGTTCGTCGGG 61.426 66.667 0.00 0.14 40.13 5.14
396 459 2.758089 CGTCCTCGTTCGTCGGGAT 61.758 63.158 4.46 0.00 43.64 3.85
397 460 1.063811 GTCCTCGTTCGTCGGGATC 59.936 63.158 4.46 0.00 43.64 3.36
404 467 1.588404 CGTTCGTCGGGATCAATCAAG 59.412 52.381 0.00 0.00 35.71 3.02
406 469 1.480789 TCGTCGGGATCAATCAAGGA 58.519 50.000 0.00 0.00 0.00 3.36
408 471 1.571919 GTCGGGATCAATCAAGGACG 58.428 55.000 0.00 0.00 0.00 4.79
409 472 0.464036 TCGGGATCAATCAAGGACGG 59.536 55.000 0.00 0.00 0.00 4.79
410 473 0.464036 CGGGATCAATCAAGGACGGA 59.536 55.000 0.00 0.00 0.00 4.69
413 476 1.212616 GATCAATCAAGGACGGAGCG 58.787 55.000 0.00 0.00 0.00 5.03
415 478 1.815421 CAATCAAGGACGGAGCGGG 60.815 63.158 0.00 0.00 0.00 6.13
416 479 3.031417 AATCAAGGACGGAGCGGGG 62.031 63.158 0.00 0.00 0.00 5.73
434 497 2.041819 GAGGTCCCATCCCGTCCT 60.042 66.667 0.00 0.00 0.00 3.85
435 498 1.232216 GAGGTCCCATCCCGTCCTA 59.768 63.158 0.00 0.00 0.00 2.94
436 499 1.075450 AGGTCCCATCCCGTCCTAC 60.075 63.158 0.00 0.00 0.00 3.18
437 500 1.382146 GGTCCCATCCCGTCCTACA 60.382 63.158 0.00 0.00 0.00 2.74
438 501 0.979187 GGTCCCATCCCGTCCTACAA 60.979 60.000 0.00 0.00 0.00 2.41
440 503 0.042131 TCCCATCCCGTCCTACAACT 59.958 55.000 0.00 0.00 0.00 3.16
442 505 1.687123 CCCATCCCGTCCTACAACTAG 59.313 57.143 0.00 0.00 0.00 2.57
443 506 1.687123 CCATCCCGTCCTACAACTAGG 59.313 57.143 0.00 0.00 41.19 3.02
444 507 2.385803 CATCCCGTCCTACAACTAGGT 58.614 52.381 0.00 0.00 40.71 3.08
445 508 3.559069 CATCCCGTCCTACAACTAGGTA 58.441 50.000 0.00 0.00 40.71 3.08
446 509 3.004752 TCCCGTCCTACAACTAGGTAC 57.995 52.381 0.00 0.00 40.71 3.34
448 511 2.632377 CCGTCCTACAACTAGGTACGA 58.368 52.381 14.84 0.00 41.44 3.43
449 512 3.209410 CCGTCCTACAACTAGGTACGAT 58.791 50.000 14.84 0.00 41.44 3.73
450 513 3.003068 CCGTCCTACAACTAGGTACGATG 59.997 52.174 14.84 0.00 41.44 3.84
452 515 3.631227 GTCCTACAACTAGGTACGATGCT 59.369 47.826 0.00 0.00 40.71 3.79
454 517 2.846039 ACAACTAGGTACGATGCTCG 57.154 50.000 0.00 4.36 46.93 5.03
455 518 1.202268 ACAACTAGGTACGATGCTCGC 60.202 52.381 5.63 0.00 45.12 5.03
456 519 1.100510 AACTAGGTACGATGCTCGCA 58.899 50.000 5.63 0.00 45.12 5.10
458 521 1.681793 ACTAGGTACGATGCTCGCATT 59.318 47.619 5.79 0.00 45.12 3.56
459 522 2.100916 ACTAGGTACGATGCTCGCATTT 59.899 45.455 5.79 0.00 45.12 2.32
460 523 1.290203 AGGTACGATGCTCGCATTTG 58.710 50.000 5.79 4.90 45.12 2.32
461 524 0.316196 GGTACGATGCTCGCATTTGC 60.316 55.000 5.79 0.67 45.12 3.68
462 525 0.652592 GTACGATGCTCGCATTTGCT 59.347 50.000 5.79 0.00 45.12 3.91
463 526 1.062587 GTACGATGCTCGCATTTGCTT 59.937 47.619 5.79 0.00 45.12 3.91
464 527 0.097674 ACGATGCTCGCATTTGCTTC 59.902 50.000 5.79 0.00 45.12 3.86
465 528 0.097499 CGATGCTCGCATTTGCTTCA 59.903 50.000 5.79 0.00 36.70 3.02
466 529 1.268386 CGATGCTCGCATTTGCTTCAT 60.268 47.619 5.79 1.56 36.70 2.57
467 530 2.793585 CGATGCTCGCATTTGCTTCATT 60.794 45.455 5.79 0.00 36.70 2.57
468 531 1.985334 TGCTCGCATTTGCTTCATTG 58.015 45.000 0.51 0.00 39.32 2.82
470 533 1.135315 GCTCGCATTTGCTTCATTGGA 60.135 47.619 0.51 0.00 39.32 3.53
471 534 2.480759 GCTCGCATTTGCTTCATTGGAT 60.481 45.455 0.51 0.00 39.32 3.41
473 536 2.159212 TCGCATTTGCTTCATTGGATGG 60.159 45.455 0.51 0.00 39.32 3.51
475 538 2.557317 CATTTGCTTCATTGGATGGCC 58.443 47.619 0.00 0.00 0.00 5.36
476 539 1.642112 TTTGCTTCATTGGATGGCCA 58.358 45.000 8.56 8.56 44.17 5.36
488 551 2.575735 TGGATGGCCAATCTTGAGTACA 59.424 45.455 10.96 0.00 42.49 2.90
489 552 2.945668 GGATGGCCAATCTTGAGTACAC 59.054 50.000 10.96 0.00 35.43 2.90
490 553 3.609853 GATGGCCAATCTTGAGTACACA 58.390 45.455 10.96 0.00 32.01 3.72
491 554 3.057969 TGGCCAATCTTGAGTACACAG 57.942 47.619 0.61 0.00 0.00 3.66
492 555 1.740025 GGCCAATCTTGAGTACACAGC 59.260 52.381 0.00 0.00 0.00 4.40
493 556 2.616510 GGCCAATCTTGAGTACACAGCT 60.617 50.000 0.00 0.00 0.00 4.24
494 557 3.369471 GGCCAATCTTGAGTACACAGCTA 60.369 47.826 0.00 0.00 0.00 3.32
499 562 6.286758 CAATCTTGAGTACACAGCTATCCAT 58.713 40.000 0.00 0.00 0.00 3.41
500 563 5.939764 TCTTGAGTACACAGCTATCCATT 57.060 39.130 0.00 0.00 0.00 3.16
501 564 6.299805 TCTTGAGTACACAGCTATCCATTT 57.700 37.500 0.00 0.00 0.00 2.32
504 850 7.342026 TCTTGAGTACACAGCTATCCATTTCTA 59.658 37.037 0.00 0.00 0.00 2.10
518 864 1.276622 TTTCTAGTGGAGGTGGAGCC 58.723 55.000 0.00 0.00 37.58 4.70
519 865 0.116342 TTCTAGTGGAGGTGGAGCCA 59.884 55.000 0.00 0.00 40.61 4.75
531 1309 1.136828 TGGAGCCACTTGTTAGGTGT 58.863 50.000 0.00 0.00 33.31 4.16
533 1311 0.875059 GAGCCACTTGTTAGGTGTGC 59.125 55.000 0.00 0.00 33.96 4.57
535 1313 0.593128 GCCACTTGTTAGGTGTGCTG 59.407 55.000 0.00 0.00 33.31 4.41
536 1314 1.813862 GCCACTTGTTAGGTGTGCTGA 60.814 52.381 0.00 0.00 33.31 4.26
537 1315 2.571212 CCACTTGTTAGGTGTGCTGAA 58.429 47.619 0.00 0.00 33.31 3.02
539 1317 4.323417 CCACTTGTTAGGTGTGCTGAATA 58.677 43.478 0.00 0.00 33.31 1.75
540 1318 4.759693 CCACTTGTTAGGTGTGCTGAATAA 59.240 41.667 0.00 0.00 33.31 1.40
541 1319 5.415701 CCACTTGTTAGGTGTGCTGAATAAT 59.584 40.000 0.00 0.00 33.31 1.28
542 1320 6.071952 CCACTTGTTAGGTGTGCTGAATAATT 60.072 38.462 0.00 0.00 33.31 1.40
544 1322 6.714810 ACTTGTTAGGTGTGCTGAATAATTCA 59.285 34.615 0.00 0.00 38.17 2.57
546 1324 7.701539 TGTTAGGTGTGCTGAATAATTCAAT 57.298 32.000 0.00 0.00 39.58 2.57
547 1325 7.761409 TGTTAGGTGTGCTGAATAATTCAATC 58.239 34.615 0.00 0.00 39.58 2.67
548 1326 5.490139 AGGTGTGCTGAATAATTCAATCG 57.510 39.130 0.00 0.00 39.58 3.34
550 1328 4.201950 GGTGTGCTGAATAATTCAATCGCT 60.202 41.667 0.00 0.00 39.58 4.93
551 1329 5.335127 GTGTGCTGAATAATTCAATCGCTT 58.665 37.500 0.00 0.00 39.58 4.68
552 1330 5.801947 GTGTGCTGAATAATTCAATCGCTTT 59.198 36.000 0.00 0.00 39.58 3.51
553 1331 6.308766 GTGTGCTGAATAATTCAATCGCTTTT 59.691 34.615 0.00 0.00 39.58 2.27
554 1332 7.484641 GTGTGCTGAATAATTCAATCGCTTTTA 59.515 33.333 0.00 0.00 39.58 1.52
555 1333 7.484641 TGTGCTGAATAATTCAATCGCTTTTAC 59.515 33.333 0.00 0.00 39.58 2.01
556 1334 7.698130 GTGCTGAATAATTCAATCGCTTTTACT 59.302 33.333 0.00 0.00 39.58 2.24
558 1336 7.305648 GCTGAATAATTCAATCGCTTTTACTGC 60.306 37.037 0.00 0.00 39.58 4.40
560 1338 6.699575 ATAATTCAATCGCTTTTACTGCCT 57.300 33.333 0.00 0.00 0.00 4.75
561 1339 4.622701 ATTCAATCGCTTTTACTGCCTC 57.377 40.909 0.00 0.00 0.00 4.70
562 1340 2.356135 TCAATCGCTTTTACTGCCTCC 58.644 47.619 0.00 0.00 0.00 4.30
563 1341 2.027192 TCAATCGCTTTTACTGCCTCCT 60.027 45.455 0.00 0.00 0.00 3.69
564 1342 2.749621 CAATCGCTTTTACTGCCTCCTT 59.250 45.455 0.00 0.00 0.00 3.36
565 1343 1.808411 TCGCTTTTACTGCCTCCTTG 58.192 50.000 0.00 0.00 0.00 3.61
566 1344 0.169009 CGCTTTTACTGCCTCCTTGC 59.831 55.000 0.00 0.00 0.00 4.01
567 1345 1.247567 GCTTTTACTGCCTCCTTGCA 58.752 50.000 0.00 0.00 39.37 4.08
568 1346 1.068264 GCTTTTACTGCCTCCTTGCAC 60.068 52.381 0.00 0.00 36.04 4.57
569 1347 2.229792 CTTTTACTGCCTCCTTGCACA 58.770 47.619 0.00 0.00 36.04 4.57
570 1348 2.584835 TTTACTGCCTCCTTGCACAT 57.415 45.000 0.00 0.00 36.04 3.21
571 1349 1.825090 TTACTGCCTCCTTGCACATG 58.175 50.000 0.00 0.00 36.04 3.21
575 1353 2.765969 CCTCCTTGCACATGGGGT 59.234 61.111 0.00 0.00 0.00 4.95
578 1356 1.341080 CTCCTTGCACATGGGGTTTT 58.659 50.000 0.00 0.00 0.00 2.43
581 1359 1.693606 CCTTGCACATGGGGTTTTCTT 59.306 47.619 0.00 0.00 0.00 2.52
584 1362 2.676748 TGCACATGGGGTTTTCTTCTT 58.323 42.857 0.00 0.00 0.00 2.52
585 1363 3.037549 TGCACATGGGGTTTTCTTCTTT 58.962 40.909 0.00 0.00 0.00 2.52
587 1365 3.809279 GCACATGGGGTTTTCTTCTTTTG 59.191 43.478 0.00 0.00 0.00 2.44
606 1384 6.432162 TCTTTTGAAGATTGAGATGACAAGGG 59.568 38.462 0.00 0.00 33.22 3.95
607 1385 5.503634 TTGAAGATTGAGATGACAAGGGA 57.496 39.130 0.00 0.00 33.22 4.20
609 1387 4.779489 TGAAGATTGAGATGACAAGGGAGA 59.221 41.667 0.00 0.00 33.22 3.71
610 1388 5.105023 TGAAGATTGAGATGACAAGGGAGAG 60.105 44.000 0.00 0.00 33.22 3.20
611 1389 4.618635 AGATTGAGATGACAAGGGAGAGA 58.381 43.478 0.00 0.00 33.22 3.10
612 1390 5.218179 AGATTGAGATGACAAGGGAGAGAT 58.782 41.667 0.00 0.00 33.22 2.75
613 1391 6.380414 AGATTGAGATGACAAGGGAGAGATA 58.620 40.000 0.00 0.00 33.22 1.98
614 1392 6.843333 AGATTGAGATGACAAGGGAGAGATAA 59.157 38.462 0.00 0.00 33.22 1.75
616 1394 5.523588 TGAGATGACAAGGGAGAGATAAGT 58.476 41.667 0.00 0.00 0.00 2.24
617 1395 6.673583 TGAGATGACAAGGGAGAGATAAGTA 58.326 40.000 0.00 0.00 0.00 2.24
618 1396 7.301420 TGAGATGACAAGGGAGAGATAAGTAT 58.699 38.462 0.00 0.00 0.00 2.12
619 1397 7.232330 TGAGATGACAAGGGAGAGATAAGTATG 59.768 40.741 0.00 0.00 0.00 2.39
620 1398 7.072562 AGATGACAAGGGAGAGATAAGTATGT 58.927 38.462 0.00 0.00 0.00 2.29
621 1399 6.716934 TGACAAGGGAGAGATAAGTATGTC 57.283 41.667 0.00 0.00 36.19 3.06
622 1400 5.299531 TGACAAGGGAGAGATAAGTATGTCG 59.700 44.000 0.00 0.00 37.93 4.35
624 1402 4.456662 AGGGAGAGATAAGTATGTCGGT 57.543 45.455 0.00 0.00 31.84 4.69
625 1403 4.805744 AGGGAGAGATAAGTATGTCGGTT 58.194 43.478 0.00 0.00 31.84 4.44
626 1404 5.209659 AGGGAGAGATAAGTATGTCGGTTT 58.790 41.667 0.00 0.00 31.84 3.27
627 1405 6.371278 AGGGAGAGATAAGTATGTCGGTTTA 58.629 40.000 0.00 0.00 31.84 2.01
628 1406 7.011382 AGGGAGAGATAAGTATGTCGGTTTAT 58.989 38.462 0.00 0.00 31.84 1.40
629 1407 8.168725 AGGGAGAGATAAGTATGTCGGTTTATA 58.831 37.037 0.00 0.00 31.84 0.98
639 1417 9.624373 AAGTATGTCGGTTTATACTTCTAGAGA 57.376 33.333 0.00 0.00 43.14 3.10
640 1418 9.275398 AGTATGTCGGTTTATACTTCTAGAGAG 57.725 37.037 0.00 0.00 36.90 3.20
641 1419 9.270640 GTATGTCGGTTTATACTTCTAGAGAGA 57.729 37.037 8.38 0.00 0.00 3.10
652 1430 2.566913 TCTAGAGAGAAGCTAGCGGTG 58.433 52.381 9.55 0.00 36.22 4.94
653 1431 2.170817 TCTAGAGAGAAGCTAGCGGTGA 59.829 50.000 9.55 0.00 36.22 4.02
655 1433 0.383949 GAGAGAAGCTAGCGGTGAGG 59.616 60.000 9.55 0.00 0.00 3.86
656 1434 0.033991 AGAGAAGCTAGCGGTGAGGA 60.034 55.000 9.55 0.00 0.00 3.71
657 1435 0.383949 GAGAAGCTAGCGGTGAGGAG 59.616 60.000 9.55 0.00 0.00 3.69
658 1436 0.033991 AGAAGCTAGCGGTGAGGAGA 60.034 55.000 9.55 0.00 0.00 3.71
661 1439 0.396417 AGCTAGCGGTGAGGAGACAT 60.396 55.000 9.55 0.00 0.00 3.06
662 1440 0.461961 GCTAGCGGTGAGGAGACATT 59.538 55.000 0.00 0.00 0.00 2.71
665 1443 0.247736 AGCGGTGAGGAGACATTCAC 59.752 55.000 0.00 0.00 42.25 3.18
674 1452 7.396540 GTGAGGAGACATTCACCATTTAATT 57.603 36.000 0.00 0.00 38.16 1.40
675 1453 8.506168 GTGAGGAGACATTCACCATTTAATTA 57.494 34.615 0.00 0.00 38.16 1.40
676 1454 8.398665 GTGAGGAGACATTCACCATTTAATTAC 58.601 37.037 0.00 0.00 38.16 1.89
677 1455 8.328758 TGAGGAGACATTCACCATTTAATTACT 58.671 33.333 0.00 0.00 28.86 2.24
678 1456 8.511604 AGGAGACATTCACCATTTAATTACTG 57.488 34.615 0.00 0.00 28.86 2.74
681 1459 5.890334 ACATTCACCATTTAATTACTGGCG 58.110 37.500 11.53 4.66 33.12 5.69
682 1460 4.364415 TTCACCATTTAATTACTGGCGC 57.636 40.909 0.00 0.00 33.12 6.53
683 1461 3.348119 TCACCATTTAATTACTGGCGCA 58.652 40.909 10.83 0.00 33.12 6.09
697 1475 4.024698 CGCAGCTGCATCCTACTC 57.975 61.111 36.03 5.81 42.21 2.59
698 1476 1.948138 CGCAGCTGCATCCTACTCG 60.948 63.158 36.03 14.34 42.21 4.18
699 1477 1.142748 GCAGCTGCATCCTACTCGT 59.857 57.895 33.36 0.00 41.59 4.18
700 1478 0.873743 GCAGCTGCATCCTACTCGTC 60.874 60.000 33.36 0.00 41.59 4.20
701 1479 0.249238 CAGCTGCATCCTACTCGTCC 60.249 60.000 0.00 0.00 0.00 4.79
702 1480 1.068250 GCTGCATCCTACTCGTCCC 59.932 63.158 0.00 0.00 0.00 4.46
703 1481 1.676678 GCTGCATCCTACTCGTCCCA 61.677 60.000 0.00 0.00 0.00 4.37
704 1482 1.043816 CTGCATCCTACTCGTCCCAT 58.956 55.000 0.00 0.00 0.00 4.00
705 1483 1.414181 CTGCATCCTACTCGTCCCATT 59.586 52.381 0.00 0.00 0.00 3.16
706 1484 1.837439 TGCATCCTACTCGTCCCATTT 59.163 47.619 0.00 0.00 0.00 2.32
707 1485 2.238646 TGCATCCTACTCGTCCCATTTT 59.761 45.455 0.00 0.00 0.00 1.82
708 1486 3.452990 TGCATCCTACTCGTCCCATTTTA 59.547 43.478 0.00 0.00 0.00 1.52
709 1487 4.102524 TGCATCCTACTCGTCCCATTTTAT 59.897 41.667 0.00 0.00 0.00 1.40
710 1488 4.691216 GCATCCTACTCGTCCCATTTTATC 59.309 45.833 0.00 0.00 0.00 1.75
711 1489 5.741964 GCATCCTACTCGTCCCATTTTATCA 60.742 44.000 0.00 0.00 0.00 2.15
712 1490 5.943349 TCCTACTCGTCCCATTTTATCAA 57.057 39.130 0.00 0.00 0.00 2.57
713 1491 5.914033 TCCTACTCGTCCCATTTTATCAAG 58.086 41.667 0.00 0.00 0.00 3.02
714 1492 4.511826 CCTACTCGTCCCATTTTATCAAGC 59.488 45.833 0.00 0.00 0.00 4.01
716 1494 2.285083 TCGTCCCATTTTATCAAGCGG 58.715 47.619 0.00 0.00 0.00 5.52
717 1495 1.333619 CGTCCCATTTTATCAAGCGGG 59.666 52.381 0.00 0.00 34.81 6.13
718 1496 2.650322 GTCCCATTTTATCAAGCGGGA 58.350 47.619 0.00 0.00 40.42 5.14
719 1497 3.020984 GTCCCATTTTATCAAGCGGGAA 58.979 45.455 0.00 0.00 44.15 3.97
723 1501 4.199310 CCATTTTATCAAGCGGGAAGAGA 58.801 43.478 0.00 0.00 0.00 3.10
725 1503 5.125417 CCATTTTATCAAGCGGGAAGAGAAA 59.875 40.000 0.00 0.00 0.00 2.52
726 1504 6.350110 CCATTTTATCAAGCGGGAAGAGAAAA 60.350 38.462 0.00 0.00 37.03 2.29
729 1507 4.553330 ATCAAGCGGGAAGAGAAAAGTA 57.447 40.909 0.00 0.00 0.00 2.24
730 1508 3.926616 TCAAGCGGGAAGAGAAAAGTAG 58.073 45.455 0.00 0.00 0.00 2.57
732 1510 4.525487 TCAAGCGGGAAGAGAAAAGTAGTA 59.475 41.667 0.00 0.00 0.00 1.82
733 1511 4.722361 AGCGGGAAGAGAAAAGTAGTAG 57.278 45.455 0.00 0.00 0.00 2.57
734 1512 4.342359 AGCGGGAAGAGAAAAGTAGTAGA 58.658 43.478 0.00 0.00 0.00 2.59
735 1513 4.771054 AGCGGGAAGAGAAAAGTAGTAGAA 59.229 41.667 0.00 0.00 0.00 2.10
736 1514 5.103687 GCGGGAAGAGAAAAGTAGTAGAAG 58.896 45.833 0.00 0.00 0.00 2.85
737 1515 5.105837 GCGGGAAGAGAAAAGTAGTAGAAGA 60.106 44.000 0.00 0.00 0.00 2.87
738 1516 6.571925 GCGGGAAGAGAAAAGTAGTAGAAGAA 60.572 42.308 0.00 0.00 0.00 2.52
739 1517 7.030768 CGGGAAGAGAAAAGTAGTAGAAGAAG 58.969 42.308 0.00 0.00 0.00 2.85
740 1518 7.094291 CGGGAAGAGAAAAGTAGTAGAAGAAGA 60.094 40.741 0.00 0.00 0.00 2.87
741 1519 8.586744 GGGAAGAGAAAAGTAGTAGAAGAAGAA 58.413 37.037 0.00 0.00 0.00 2.52
742 1520 9.634163 GGAAGAGAAAAGTAGTAGAAGAAGAAG 57.366 37.037 0.00 0.00 0.00 2.85
747 1525 9.483916 AGAAAAGTAGTAGAAGAAGAAGAAAGC 57.516 33.333 0.00 0.00 0.00 3.51
748 1526 9.262358 GAAAAGTAGTAGAAGAAGAAGAAAGCA 57.738 33.333 0.00 0.00 0.00 3.91
750 1528 9.785982 AAAGTAGTAGAAGAAGAAGAAAGCATT 57.214 29.630 0.00 0.00 0.00 3.56
751 1529 8.770438 AGTAGTAGAAGAAGAAGAAAGCATTG 57.230 34.615 0.00 0.00 0.00 2.82
753 1531 4.780275 AGAAGAAGAAGAAAGCATTGCC 57.220 40.909 4.70 0.00 0.00 4.52
754 1532 4.405548 AGAAGAAGAAGAAAGCATTGCCT 58.594 39.130 4.70 0.00 0.00 4.75
775 1689 1.543802 GCATCCTACTCCTCCTCATCG 59.456 57.143 0.00 0.00 0.00 3.84
784 1930 1.751351 TCCTCCTCATCGTGTAAGCAG 59.249 52.381 0.00 0.00 0.00 4.24
785 1931 1.478510 CCTCCTCATCGTGTAAGCAGT 59.521 52.381 0.00 0.00 0.00 4.40
786 1932 2.688446 CCTCCTCATCGTGTAAGCAGTA 59.312 50.000 0.00 0.00 0.00 2.74
787 1933 3.130516 CCTCCTCATCGTGTAAGCAGTAA 59.869 47.826 0.00 0.00 0.00 2.24
788 1934 4.355437 CTCCTCATCGTGTAAGCAGTAAG 58.645 47.826 0.00 0.00 0.00 2.34
789 1935 2.860735 CCTCATCGTGTAAGCAGTAAGC 59.139 50.000 0.00 0.00 46.19 3.09
799 1947 1.523938 GCAGTAAGCACCGGGATCC 60.524 63.158 6.32 1.92 44.79 3.36
805 1953 3.551407 GCACCGGGATCCTCCTCC 61.551 72.222 12.58 0.00 36.57 4.30
812 1960 3.299190 GATCCTCCTCCTCCGCCG 61.299 72.222 0.00 0.00 0.00 6.46
819 1967 4.821589 CTCCTCCGCCGCACTTCC 62.822 72.222 0.00 0.00 0.00 3.46
826 1974 2.185867 GCCGCACTTCCGTCCATA 59.814 61.111 0.00 0.00 0.00 2.74
827 1975 1.883084 GCCGCACTTCCGTCCATAG 60.883 63.158 0.00 0.00 0.00 2.23
828 1976 1.883084 CCGCACTTCCGTCCATAGC 60.883 63.158 0.00 0.00 0.00 2.97
829 1977 2.230940 CGCACTTCCGTCCATAGCG 61.231 63.158 0.00 0.00 37.68 4.26
830 1978 1.141019 GCACTTCCGTCCATAGCGA 59.859 57.895 0.00 0.00 0.00 4.93
831 1979 0.872021 GCACTTCCGTCCATAGCGAG 60.872 60.000 0.00 0.00 0.00 5.03
832 1980 0.872021 CACTTCCGTCCATAGCGAGC 60.872 60.000 0.00 0.00 0.00 5.03
833 1981 1.300233 CTTCCGTCCATAGCGAGCC 60.300 63.158 0.00 0.00 0.00 4.70
834 1982 2.701163 CTTCCGTCCATAGCGAGCCC 62.701 65.000 0.00 0.00 0.00 5.19
835 1983 4.301027 CCGTCCATAGCGAGCCCC 62.301 72.222 0.00 0.00 0.00 5.80
836 1984 4.647615 CGTCCATAGCGAGCCCCG 62.648 72.222 0.00 0.00 42.21 5.73
837 1985 4.301027 GTCCATAGCGAGCCCCGG 62.301 72.222 0.00 0.00 39.04 5.73
838 1986 4.533124 TCCATAGCGAGCCCCGGA 62.533 66.667 0.73 0.00 39.04 5.14
839 1987 3.546543 CCATAGCGAGCCCCGGAA 61.547 66.667 0.73 0.00 39.04 4.30
840 1988 2.743718 CATAGCGAGCCCCGGAAT 59.256 61.111 0.73 0.00 39.04 3.01
841 1989 1.374758 CATAGCGAGCCCCGGAATC 60.375 63.158 0.73 0.00 39.04 2.52
842 1990 1.837051 ATAGCGAGCCCCGGAATCA 60.837 57.895 0.73 0.00 39.04 2.57
843 1991 1.194781 ATAGCGAGCCCCGGAATCAT 61.195 55.000 0.73 0.00 39.04 2.45
844 1992 1.816863 TAGCGAGCCCCGGAATCATC 61.817 60.000 0.73 0.00 39.04 2.92
845 1993 2.031163 CGAGCCCCGGAATCATCC 59.969 66.667 0.73 0.00 42.80 3.51
846 1994 2.807107 CGAGCCCCGGAATCATCCA 61.807 63.158 0.73 0.00 46.97 3.41
847 1995 1.227973 GAGCCCCGGAATCATCCAC 60.228 63.158 0.73 0.00 46.97 4.02
848 1996 1.983119 GAGCCCCGGAATCATCCACA 61.983 60.000 0.73 0.00 46.97 4.17
849 1997 1.151450 GCCCCGGAATCATCCACAT 59.849 57.895 0.73 0.00 46.97 3.21
850 1998 1.174712 GCCCCGGAATCATCCACATG 61.175 60.000 0.73 0.00 46.97 3.21
851 1999 0.183492 CCCCGGAATCATCCACATGT 59.817 55.000 0.73 0.00 46.97 3.21
852 2000 1.419762 CCCCGGAATCATCCACATGTA 59.580 52.381 0.73 0.00 46.97 2.29
853 2001 2.040278 CCCCGGAATCATCCACATGTAT 59.960 50.000 0.73 0.00 46.97 2.29
854 2002 3.076621 CCCGGAATCATCCACATGTATG 58.923 50.000 0.73 0.00 46.97 2.39
855 2003 3.496692 CCCGGAATCATCCACATGTATGT 60.497 47.826 0.73 0.00 46.97 2.29
856 2004 3.748048 CCGGAATCATCCACATGTATGTC 59.252 47.826 0.00 0.00 46.97 3.06
857 2005 4.503817 CCGGAATCATCCACATGTATGTCT 60.504 45.833 0.00 0.00 46.97 3.41
858 2006 4.687948 CGGAATCATCCACATGTATGTCTC 59.312 45.833 0.00 1.72 46.97 3.36
859 2007 4.999950 GGAATCATCCACATGTATGTCTCC 59.000 45.833 0.00 6.95 45.79 3.71
860 2008 5.221803 GGAATCATCCACATGTATGTCTCCT 60.222 44.000 16.44 0.00 45.79 3.69
861 2009 4.944619 TCATCCACATGTATGTCTCCTC 57.055 45.455 0.00 0.00 39.39 3.71
862 2010 3.643320 TCATCCACATGTATGTCTCCTCC 59.357 47.826 0.00 0.00 39.39 4.30
863 2011 3.114643 TCCACATGTATGTCTCCTCCA 57.885 47.619 0.00 0.00 39.39 3.86
864 2012 3.449918 TCCACATGTATGTCTCCTCCAA 58.550 45.455 0.00 0.00 39.39 3.53
865 2013 3.843619 TCCACATGTATGTCTCCTCCAAA 59.156 43.478 0.00 0.00 39.39 3.28
866 2014 3.941483 CCACATGTATGTCTCCTCCAAAC 59.059 47.826 0.00 0.00 39.39 2.93
867 2015 4.323792 CCACATGTATGTCTCCTCCAAACT 60.324 45.833 0.00 0.00 39.39 2.66
868 2016 4.872691 CACATGTATGTCTCCTCCAAACTC 59.127 45.833 0.00 0.00 39.39 3.01
872 2020 5.491070 TGTATGTCTCCTCCAAACTCAATG 58.509 41.667 0.00 0.00 0.00 2.82
910 2060 2.485426 TCCATTTTCTCAGAAGCAAGCG 59.515 45.455 0.00 0.00 0.00 4.68
923 2075 1.342082 GCAAGCGAGCAAGCACATTG 61.342 55.000 6.21 3.50 42.20 2.82
978 2138 2.642427 TGCTTCTCTGTGTTCTTTGCA 58.358 42.857 0.00 0.00 0.00 4.08
985 2145 4.398988 TCTCTGTGTTCTTTGCATGTGTTT 59.601 37.500 0.00 0.00 0.00 2.83
999 2159 4.558697 GCATGTGTTTTCCTTAGTGTTCCC 60.559 45.833 0.00 0.00 0.00 3.97
1053 2213 2.289945 ACCACTGCTCTCCATTCTCAAC 60.290 50.000 0.00 0.00 0.00 3.18
1054 2214 2.289882 CCACTGCTCTCCATTCTCAACA 60.290 50.000 0.00 0.00 0.00 3.33
1056 2216 4.008330 CACTGCTCTCCATTCTCAACAAT 58.992 43.478 0.00 0.00 0.00 2.71
1062 2222 6.070251 TGCTCTCCATTCTCAACAATAAGGTA 60.070 38.462 0.00 0.00 0.00 3.08
1125 2285 2.968574 GGAGGAGCAACATGAGATCCTA 59.031 50.000 22.95 0.00 40.48 2.94
1184 2344 3.854669 CGAGAAGGCGGCATCCCT 61.855 66.667 13.08 1.57 0.00 4.20
1185 2345 2.203126 GAGAAGGCGGCATCCCTG 60.203 66.667 13.08 0.00 31.73 4.45
1189 2370 2.257409 GAAGGCGGCATCCCTGAGAA 62.257 60.000 13.08 0.00 31.73 2.87
1190 2371 2.203126 GGCGGCATCCCTGAGAAG 60.203 66.667 3.07 0.00 0.00 2.85
1224 2405 3.159298 GCTCGAGGCCATCAAGAAA 57.841 52.632 15.58 0.00 34.27 2.52
1329 2510 0.963962 AGCTTGGCTTTGATGTGGTG 59.036 50.000 0.00 0.00 33.89 4.17
1359 2540 2.280592 ACCCACAACCGCTTCGTC 60.281 61.111 0.00 0.00 0.00 4.20
1380 2561 1.200519 TCCGTAACAGGATGGGAAGG 58.799 55.000 0.00 0.00 43.62 3.46
1453 2634 4.639135 GCCTTTGGCTTTAAGTATGAGG 57.361 45.455 0.73 0.00 46.69 3.86
1467 2651 2.435059 GAGGAACAGCCGCTGGTC 60.435 66.667 27.40 27.40 46.44 4.02
1488 2672 1.899814 TCCAGTCAATTACGGCAGACT 59.100 47.619 0.00 0.00 41.70 3.24
1499 2683 0.108186 CGGCAGACTGGTCATGCTAA 60.108 55.000 17.50 0.00 39.88 3.09
1521 2705 3.138283 ACACTGACCCAGAGGAAATCAAA 59.862 43.478 0.45 0.00 35.18 2.69
1668 6854 3.972502 CCTTAGCGCAACTTGTTTACAAC 59.027 43.478 11.47 0.00 0.00 3.32
1769 6955 7.549488 GGCTAAAAGTATAGTTGAAGAAGCTCA 59.451 37.037 0.00 0.00 0.00 4.26
1794 6980 7.134362 TGAGAAGAAGGATGATAGCAAAGAT 57.866 36.000 0.00 0.00 0.00 2.40
1820 7054 2.222027 CACTTCCAAGAAGACACCACC 58.778 52.381 11.17 0.00 0.00 4.61
1876 7110 5.672194 AGGTACCTCCTTGTATTGGATGATT 59.328 40.000 9.21 0.00 45.67 2.57
1894 7128 1.961793 TTTCTGGGAACGACAGGTTG 58.038 50.000 0.00 0.00 39.50 3.77
1990 7224 4.518970 ACGAACAAGTGGCTGAAATAATGT 59.481 37.500 0.00 0.00 0.00 2.71
2000 7237 4.262164 GGCTGAAATAATGTGCCCTATTGG 60.262 45.833 0.00 0.00 37.81 3.16
2109 7347 1.295423 GCCTAGCGAGTTGGTGGAA 59.705 57.895 0.00 0.00 0.00 3.53
2125 7363 5.825532 TGGTGGAAATGGTTGATGAGATTA 58.174 37.500 0.00 0.00 0.00 1.75
2158 7396 2.479566 TGGTTCTCCTTTAGCTGCAG 57.520 50.000 10.11 10.11 34.23 4.41
2223 7461 3.988976 TGGGAGGCTATATCAATCAGC 57.011 47.619 0.00 0.00 34.48 4.26
2248 7486 1.003580 ACATTTGCACCGAGGAGACAT 59.996 47.619 0.00 0.00 0.00 3.06
2325 7563 2.001159 TGCTTTGCTTTTTGTGCTGTG 58.999 42.857 0.00 0.00 0.00 3.66
2408 7649 3.157087 TCATCCAGGAAAAGCAAGTTCC 58.843 45.455 0.00 5.22 44.25 3.62
2445 7686 4.992951 GGCAAACAGATTTTTCATGAGCTT 59.007 37.500 0.00 0.00 0.00 3.74
2519 7793 7.008021 AGGAAATTGAATACAATGGCTTGTT 57.992 32.000 7.46 0.00 43.05 2.83
2568 7843 4.024302 CACGATCTTATGCATGATGTTGCT 60.024 41.667 10.16 0.00 43.18 3.91
2595 7870 5.129634 TCTGTAATGAAAAAGGAGTGTGCA 58.870 37.500 0.00 0.00 0.00 4.57
2601 7876 1.708341 AAAAGGAGTGTGCATTGGCT 58.292 45.000 0.00 0.00 41.91 4.75
2670 7945 0.389166 GTCAGAGTGAGTGGCTTCCG 60.389 60.000 0.00 0.00 0.00 4.30
2835 8143 4.342092 ACCTCTTTGCAAGCATTACAACTT 59.658 37.500 0.00 0.00 29.59 2.66
2847 8155 6.062095 AGCATTACAACTTTGTTCAGGTAGT 58.938 36.000 0.00 0.00 42.35 2.73
2861 8169 4.945246 TCAGGTAGTAGATCATTTTCGCC 58.055 43.478 0.00 0.00 0.00 5.54
2864 8172 3.982058 GGTAGTAGATCATTTTCGCCGAG 59.018 47.826 0.00 0.00 0.00 4.63
2866 8174 3.971150 AGTAGATCATTTTCGCCGAGAG 58.029 45.455 0.00 0.00 0.00 3.20
2946 8257 6.766944 CACTTCCTGAAGATATGAGCATTCTT 59.233 38.462 13.58 0.00 40.79 2.52
2964 8275 5.652994 TTCTTTACAACCTGCAAACACTT 57.347 34.783 0.00 0.00 0.00 3.16
2989 8304 4.081198 ACCTCTCTGGCTGTAAATCTCTTG 60.081 45.833 0.00 0.00 40.22 3.02
2991 8306 5.337894 CCTCTCTGGCTGTAAATCTCTTGAA 60.338 44.000 0.00 0.00 0.00 2.69
2993 8308 5.934625 TCTCTGGCTGTAAATCTCTTGAAAC 59.065 40.000 0.00 0.00 0.00 2.78
3175 8490 3.263425 AGAGCTCGGGAATTTAAACCTCA 59.737 43.478 8.37 0.00 0.00 3.86
3212 8527 8.855110 AGATTTACATCATCTAGAGAACGTGAT 58.145 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.035112 GCAAGTAGAAAGTGAAGAACCGATAG 59.965 42.308 0.00 0.00 0.00 2.08
17 18 5.867716 GCAAGTAGAAAGTGAAGAACCGATA 59.132 40.000 0.00 0.00 0.00 2.92
18 19 4.691216 GCAAGTAGAAAGTGAAGAACCGAT 59.309 41.667 0.00 0.00 0.00 4.18
19 20 4.056050 GCAAGTAGAAAGTGAAGAACCGA 58.944 43.478 0.00 0.00 0.00 4.69
20 21 4.058817 AGCAAGTAGAAAGTGAAGAACCG 58.941 43.478 0.00 0.00 0.00 4.44
21 22 5.178438 CAGAGCAAGTAGAAAGTGAAGAACC 59.822 44.000 0.00 0.00 0.00 3.62
22 23 5.986135 TCAGAGCAAGTAGAAAGTGAAGAAC 59.014 40.000 0.00 0.00 0.00 3.01
23 24 6.040955 TCTCAGAGCAAGTAGAAAGTGAAGAA 59.959 38.462 0.00 0.00 0.00 2.52
24 25 5.536538 TCTCAGAGCAAGTAGAAAGTGAAGA 59.463 40.000 0.00 0.00 0.00 2.87
25 26 5.777802 TCTCAGAGCAAGTAGAAAGTGAAG 58.222 41.667 0.00 0.00 0.00 3.02
26 27 5.536538 TCTCTCAGAGCAAGTAGAAAGTGAA 59.463 40.000 0.00 0.00 0.00 3.18
27 28 5.073428 TCTCTCAGAGCAAGTAGAAAGTGA 58.927 41.667 0.00 0.00 0.00 3.41
28 29 5.384063 TCTCTCAGAGCAAGTAGAAAGTG 57.616 43.478 0.00 0.00 0.00 3.16
29 30 6.603940 AATCTCTCAGAGCAAGTAGAAAGT 57.396 37.500 0.00 0.00 0.00 2.66
30 31 7.818930 AGAAAATCTCTCAGAGCAAGTAGAAAG 59.181 37.037 0.00 0.00 0.00 2.62
31 32 7.675062 AGAAAATCTCTCAGAGCAAGTAGAAA 58.325 34.615 0.00 0.00 0.00 2.52
32 33 7.238486 AGAAAATCTCTCAGAGCAAGTAGAA 57.762 36.000 0.00 0.00 0.00 2.10
33 34 6.849085 AGAAAATCTCTCAGAGCAAGTAGA 57.151 37.500 0.00 0.00 0.00 2.59
45 46 7.762159 AGAACTTATCCAACGAGAAAATCTCTC 59.238 37.037 5.88 0.00 46.35 3.20
46 47 7.616313 AGAACTTATCCAACGAGAAAATCTCT 58.384 34.615 5.88 0.00 41.26 3.10
47 48 7.835634 AGAACTTATCCAACGAGAAAATCTC 57.164 36.000 0.00 0.00 40.06 2.75
48 49 9.720769 TTAAGAACTTATCCAACGAGAAAATCT 57.279 29.630 0.00 0.00 0.00 2.40
53 54 9.280174 ACAAATTAAGAACTTATCCAACGAGAA 57.720 29.630 0.00 0.00 0.00 2.87
54 55 8.842358 ACAAATTAAGAACTTATCCAACGAGA 57.158 30.769 0.00 0.00 0.00 4.04
60 61 9.158233 CGGAGTTACAAATTAAGAACTTATCCA 57.842 33.333 0.00 0.00 32.37 3.41
61 62 8.121086 GCGGAGTTACAAATTAAGAACTTATCC 58.879 37.037 0.00 0.00 32.37 2.59
62 63 7.844653 CGCGGAGTTACAAATTAAGAACTTATC 59.155 37.037 0.00 0.00 32.37 1.75
63 64 7.201582 CCGCGGAGTTACAAATTAAGAACTTAT 60.202 37.037 24.07 0.00 32.37 1.73
64 65 6.091169 CCGCGGAGTTACAAATTAAGAACTTA 59.909 38.462 24.07 0.00 32.37 2.24
65 66 5.106830 CCGCGGAGTTACAAATTAAGAACTT 60.107 40.000 24.07 0.00 32.37 2.66
66 67 4.390909 CCGCGGAGTTACAAATTAAGAACT 59.609 41.667 24.07 0.00 34.88 3.01
67 68 4.389687 TCCGCGGAGTTACAAATTAAGAAC 59.610 41.667 27.28 0.00 0.00 3.01
68 69 4.567971 TCCGCGGAGTTACAAATTAAGAA 58.432 39.130 27.28 0.00 0.00 2.52
69 70 4.191033 TCCGCGGAGTTACAAATTAAGA 57.809 40.909 27.28 0.00 0.00 2.10
70 71 5.064198 TGAATCCGCGGAGTTACAAATTAAG 59.936 40.000 33.87 0.00 0.00 1.85
71 72 4.936411 TGAATCCGCGGAGTTACAAATTAA 59.064 37.500 33.87 10.48 0.00 1.40
72 73 4.330620 GTGAATCCGCGGAGTTACAAATTA 59.669 41.667 35.90 11.19 30.79 1.40
73 74 3.126343 GTGAATCCGCGGAGTTACAAATT 59.874 43.478 35.90 22.89 30.79 1.82
74 75 2.676342 GTGAATCCGCGGAGTTACAAAT 59.324 45.455 35.90 15.98 30.79 2.32
75 76 2.070783 GTGAATCCGCGGAGTTACAAA 58.929 47.619 35.90 16.30 30.79 2.83
76 77 1.001068 TGTGAATCCGCGGAGTTACAA 59.999 47.619 39.50 26.76 36.17 2.41
77 78 0.604073 TGTGAATCCGCGGAGTTACA 59.396 50.000 38.51 38.51 36.61 2.41
78 79 0.997196 GTGTGAATCCGCGGAGTTAC 59.003 55.000 34.83 34.83 31.01 2.50
79 80 0.892755 AGTGTGAATCCGCGGAGTTA 59.107 50.000 33.87 25.52 0.00 2.24
80 81 0.034896 AAGTGTGAATCCGCGGAGTT 59.965 50.000 33.87 25.20 0.00 3.01
81 82 0.034896 AAAGTGTGAATCCGCGGAGT 59.965 50.000 33.87 32.29 0.00 3.85
82 83 1.156736 AAAAGTGTGAATCCGCGGAG 58.843 50.000 33.87 4.73 0.00 4.63
83 84 1.600023 AAAAAGTGTGAATCCGCGGA 58.400 45.000 33.12 33.12 0.00 5.54
99 100 5.007039 GCGAGATCATCAGTGAGCATAAAAA 59.993 40.000 0.00 0.00 43.12 1.94
100 101 4.509230 GCGAGATCATCAGTGAGCATAAAA 59.491 41.667 0.00 0.00 43.12 1.52
101 102 4.053983 GCGAGATCATCAGTGAGCATAAA 58.946 43.478 0.00 0.00 43.12 1.40
102 103 3.320256 AGCGAGATCATCAGTGAGCATAA 59.680 43.478 0.00 0.00 43.12 1.90
103 104 2.889678 AGCGAGATCATCAGTGAGCATA 59.110 45.455 0.00 0.00 43.12 3.14
104 105 1.687660 AGCGAGATCATCAGTGAGCAT 59.312 47.619 0.00 0.00 43.12 3.79
105 106 1.109609 AGCGAGATCATCAGTGAGCA 58.890 50.000 0.00 0.00 43.12 4.26
106 107 2.293122 AGTAGCGAGATCATCAGTGAGC 59.707 50.000 0.00 0.00 41.02 4.26
107 108 3.304592 CCAGTAGCGAGATCATCAGTGAG 60.305 52.174 0.00 0.00 37.87 3.51
108 109 2.620585 CCAGTAGCGAGATCATCAGTGA 59.379 50.000 0.00 0.00 39.04 3.41
109 110 2.620585 TCCAGTAGCGAGATCATCAGTG 59.379 50.000 0.00 0.00 0.00 3.66
110 111 2.884012 CTCCAGTAGCGAGATCATCAGT 59.116 50.000 0.00 0.00 0.00 3.41
111 112 3.058293 GTCTCCAGTAGCGAGATCATCAG 60.058 52.174 0.00 0.00 38.58 2.90
112 113 2.881513 GTCTCCAGTAGCGAGATCATCA 59.118 50.000 0.00 0.00 38.58 3.07
113 114 2.227865 GGTCTCCAGTAGCGAGATCATC 59.772 54.545 0.00 0.00 37.43 2.92
114 115 2.158534 AGGTCTCCAGTAGCGAGATCAT 60.159 50.000 0.00 0.00 39.54 2.45
115 116 1.213182 AGGTCTCCAGTAGCGAGATCA 59.787 52.381 0.00 0.00 39.54 2.92
116 117 1.975660 AGGTCTCCAGTAGCGAGATC 58.024 55.000 0.00 0.00 38.58 2.75
122 123 6.203723 CAGCAAAATAATAGGTCTCCAGTAGC 59.796 42.308 0.00 0.00 0.00 3.58
126 127 4.823989 CCCAGCAAAATAATAGGTCTCCAG 59.176 45.833 0.00 0.00 0.00 3.86
134 135 6.949352 AGTGATGTCCCAGCAAAATAATAG 57.051 37.500 0.00 0.00 29.49 1.73
136 137 6.610075 AAAGTGATGTCCCAGCAAAATAAT 57.390 33.333 0.00 0.00 29.49 1.28
157 158 7.147976 GGAACCGTGTACTAGAACTAAGAAAA 58.852 38.462 0.00 0.00 0.00 2.29
163 164 3.441572 GCTGGAACCGTGTACTAGAACTA 59.558 47.826 0.00 0.00 0.00 2.24
166 167 2.029649 GTGCTGGAACCGTGTACTAGAA 60.030 50.000 0.00 0.00 0.00 2.10
171 172 0.531090 TGTGTGCTGGAACCGTGTAC 60.531 55.000 0.00 0.00 0.00 2.90
172 173 0.531090 GTGTGTGCTGGAACCGTGTA 60.531 55.000 0.00 0.00 0.00 2.90
173 174 1.817941 GTGTGTGCTGGAACCGTGT 60.818 57.895 0.00 0.00 0.00 4.49
174 175 1.775039 CTGTGTGTGCTGGAACCGTG 61.775 60.000 0.00 0.00 0.00 4.94
176 177 2.896801 GCTGTGTGTGCTGGAACCG 61.897 63.158 0.00 0.00 0.00 4.44
177 178 0.250295 TAGCTGTGTGTGCTGGAACC 60.250 55.000 0.00 0.00 41.32 3.62
178 179 1.151668 CTAGCTGTGTGTGCTGGAAC 58.848 55.000 0.00 0.00 40.73 3.62
179 180 0.603707 GCTAGCTGTGTGTGCTGGAA 60.604 55.000 7.70 0.00 40.73 3.53
180 181 1.004560 GCTAGCTGTGTGTGCTGGA 60.005 57.895 7.70 0.00 40.73 3.86
181 182 1.004080 AGCTAGCTGTGTGTGCTGG 60.004 57.895 18.57 0.00 41.32 4.85
182 183 2.160063 CAGCTAGCTGTGTGTGCTG 58.840 57.895 32.46 8.42 43.71 4.41
183 184 1.670406 GCAGCTAGCTGTGTGTGCT 60.670 57.895 37.91 3.98 45.24 4.40
184 185 2.866028 GCAGCTAGCTGTGTGTGC 59.134 61.111 37.91 24.13 45.24 4.57
193 194 0.813210 GTCCATGTCCAGCAGCTAGC 60.813 60.000 6.62 6.62 46.19 3.42
194 195 0.829333 AGTCCATGTCCAGCAGCTAG 59.171 55.000 0.00 0.00 0.00 3.42
195 196 0.538584 CAGTCCATGTCCAGCAGCTA 59.461 55.000 0.00 0.00 0.00 3.32
201 202 1.001974 TCGGTTTCAGTCCATGTCCAG 59.998 52.381 0.00 0.00 0.00 3.86
244 245 8.877864 AGGTGTCTTCATTACCATAATTTTGA 57.122 30.769 0.00 0.00 36.94 2.69
251 252 9.570468 CTAGTACTAGGTGTCTTCATTACCATA 57.430 37.037 20.44 0.00 36.94 2.74
253 254 7.408543 ACTAGTACTAGGTGTCTTCATTACCA 58.591 38.462 29.05 0.00 37.49 3.25
275 276 9.035890 TGTGACTACTAGTGGTTAGTACTACTA 57.964 37.037 13.64 2.65 43.41 1.82
277 278 8.553459 TTGTGACTACTAGTGGTTAGTACTAC 57.447 38.462 13.64 5.90 42.57 2.73
278 279 8.597167 TCTTGTGACTACTAGTGGTTAGTACTA 58.403 37.037 13.64 0.00 42.57 1.82
279 280 7.390162 GTCTTGTGACTACTAGTGGTTAGTACT 59.610 40.741 13.64 0.00 38.85 2.73
280 281 7.525759 GTCTTGTGACTACTAGTGGTTAGTAC 58.474 42.308 13.64 10.66 38.85 2.73
281 282 7.678947 GTCTTGTGACTACTAGTGGTTAGTA 57.321 40.000 13.64 0.00 41.56 1.82
282 283 6.572167 GTCTTGTGACTACTAGTGGTTAGT 57.428 41.667 13.64 4.45 39.94 2.24
296 297 4.266502 GCGAGTAATCATGAGTCTTGTGAC 59.733 45.833 0.00 0.00 43.22 3.67
297 298 4.424626 GCGAGTAATCATGAGTCTTGTGA 58.575 43.478 0.00 1.61 0.00 3.58
298 299 3.553511 GGCGAGTAATCATGAGTCTTGTG 59.446 47.826 0.00 0.00 0.00 3.33
302 323 2.625790 GGAGGCGAGTAATCATGAGTCT 59.374 50.000 0.00 0.00 0.00 3.24
303 324 2.362397 TGGAGGCGAGTAATCATGAGTC 59.638 50.000 0.00 0.00 0.00 3.36
305 326 3.583806 GATGGAGGCGAGTAATCATGAG 58.416 50.000 0.09 0.00 0.00 2.90
321 342 1.945354 GCGACTGTTCTCGGGATGGA 61.945 60.000 0.00 0.00 34.06 3.41
323 344 0.738975 TAGCGACTGTTCTCGGGATG 59.261 55.000 0.00 0.00 34.06 3.51
324 345 1.025812 CTAGCGACTGTTCTCGGGAT 58.974 55.000 0.00 0.00 34.06 3.85
325 346 1.030488 CCTAGCGACTGTTCTCGGGA 61.030 60.000 0.00 0.00 34.06 5.14
327 348 0.809385 TTCCTAGCGACTGTTCTCGG 59.191 55.000 0.00 0.00 34.06 4.63
328 349 1.738350 TCTTCCTAGCGACTGTTCTCG 59.262 52.381 0.00 0.00 36.70 4.04
329 350 2.098443 CCTCTTCCTAGCGACTGTTCTC 59.902 54.545 0.00 0.00 0.00 2.87
330 351 2.096248 CCTCTTCCTAGCGACTGTTCT 58.904 52.381 0.00 0.00 0.00 3.01
331 352 1.470112 GCCTCTTCCTAGCGACTGTTC 60.470 57.143 0.00 0.00 0.00 3.18
334 355 1.323271 TGGCCTCTTCCTAGCGACTG 61.323 60.000 3.32 0.00 0.00 3.51
335 356 0.397816 ATGGCCTCTTCCTAGCGACT 60.398 55.000 3.32 0.00 0.00 4.18
336 357 0.249657 CATGGCCTCTTCCTAGCGAC 60.250 60.000 3.32 0.00 0.00 5.19
337 358 1.402896 CCATGGCCTCTTCCTAGCGA 61.403 60.000 3.32 0.00 0.00 4.93
338 359 1.070445 CCATGGCCTCTTCCTAGCG 59.930 63.158 3.32 0.00 0.00 4.26
340 361 1.070445 CGCCATGGCCTCTTCCTAG 59.930 63.158 30.79 9.64 37.98 3.02
341 362 3.106986 GCGCCATGGCCTCTTCCTA 62.107 63.158 30.79 0.00 37.98 2.94
342 363 4.496336 GCGCCATGGCCTCTTCCT 62.496 66.667 30.79 0.00 37.98 3.36
343 364 4.496336 AGCGCCATGGCCTCTTCC 62.496 66.667 30.79 11.92 37.98 3.46
345 366 3.984193 GACAGCGCCATGGCCTCTT 62.984 63.158 30.79 16.34 37.98 2.85
346 367 4.479993 GACAGCGCCATGGCCTCT 62.480 66.667 30.79 23.61 37.98 3.69
347 368 4.783621 TGACAGCGCCATGGCCTC 62.784 66.667 30.79 21.75 37.98 4.70
348 369 4.349503 TTGACAGCGCCATGGCCT 62.350 61.111 30.79 24.12 37.98 5.19
349 370 3.818787 CTTGACAGCGCCATGGCC 61.819 66.667 30.79 22.29 37.98 5.36
350 371 3.058160 ACTTGACAGCGCCATGGC 61.058 61.111 27.67 27.67 37.85 4.40
351 372 2.693762 CCACTTGACAGCGCCATGG 61.694 63.158 7.63 7.63 0.00 3.66
352 373 2.872557 CCACTTGACAGCGCCATG 59.127 61.111 2.29 0.00 0.00 3.66
353 374 3.058160 GCCACTTGACAGCGCCAT 61.058 61.111 2.29 0.00 0.00 4.40
357 378 4.988598 ACGGGCCACTTGACAGCG 62.989 66.667 4.39 0.00 0.00 5.18
358 379 3.050275 GACGGGCCACTTGACAGC 61.050 66.667 4.39 0.00 0.00 4.40
359 380 2.738521 CGACGGGCCACTTGACAG 60.739 66.667 4.39 0.00 0.00 3.51
360 381 3.509137 GACGACGGGCCACTTGACA 62.509 63.158 4.39 0.00 0.00 3.58
361 382 2.737376 GACGACGGGCCACTTGAC 60.737 66.667 4.39 0.00 0.00 3.18
363 384 4.657824 ACGACGACGGGCCACTTG 62.658 66.667 12.58 0.00 44.46 3.16
364 385 4.353437 GACGACGACGGGCCACTT 62.353 66.667 12.58 0.00 44.46 3.16
371 392 2.202272 GAACGAGGACGACGACGG 60.202 66.667 12.58 0.00 44.46 4.79
372 393 2.570068 CGAACGAGGACGACGACG 60.570 66.667 5.58 5.58 42.66 5.12
373 394 1.508746 GACGAACGAGGACGACGAC 60.509 63.158 0.00 0.00 42.66 4.34
385 441 1.933853 CCTTGATTGATCCCGACGAAC 59.066 52.381 0.00 0.00 0.00 3.95
388 444 1.571919 GTCCTTGATTGATCCCGACG 58.428 55.000 0.00 0.00 0.00 5.12
389 445 1.571919 CGTCCTTGATTGATCCCGAC 58.428 55.000 0.00 0.00 0.00 4.79
390 446 0.464036 CCGTCCTTGATTGATCCCGA 59.536 55.000 0.00 0.00 0.00 5.14
392 455 1.811941 GCTCCGTCCTTGATTGATCCC 60.812 57.143 0.00 0.00 0.00 3.85
394 457 1.212616 CGCTCCGTCCTTGATTGATC 58.787 55.000 0.00 0.00 0.00 2.92
396 459 1.218047 CCGCTCCGTCCTTGATTGA 59.782 57.895 0.00 0.00 0.00 2.57
397 460 1.815421 CCCGCTCCGTCCTTGATTG 60.815 63.158 0.00 0.00 0.00 2.67
416 479 2.308118 TAGGACGGGATGGGACCTCC 62.308 65.000 0.00 0.00 32.90 4.30
418 481 1.075450 GTAGGACGGGATGGGACCT 60.075 63.158 0.00 0.00 35.11 3.85
420 483 0.177373 GTTGTAGGACGGGATGGGAC 59.823 60.000 0.00 0.00 0.00 4.46
422 485 1.687123 CTAGTTGTAGGACGGGATGGG 59.313 57.143 0.00 0.00 0.00 4.00
454 517 1.937899 GCCATCCAATGAAGCAAATGC 59.062 47.619 0.00 0.00 42.49 3.56
455 518 2.093394 TGGCCATCCAATGAAGCAAATG 60.093 45.455 0.00 0.00 39.99 2.32
456 519 2.189676 TGGCCATCCAATGAAGCAAAT 58.810 42.857 0.00 0.00 39.99 2.32
458 521 1.642112 TTGGCCATCCAATGAAGCAA 58.358 45.000 6.09 0.00 46.89 3.91
459 522 3.377848 TTGGCCATCCAATGAAGCA 57.622 47.368 6.09 0.00 46.89 3.91
467 530 2.575735 TGTACTCAAGATTGGCCATCCA 59.424 45.455 6.09 0.00 41.55 3.41
468 531 2.945668 GTGTACTCAAGATTGGCCATCC 59.054 50.000 6.09 0.52 31.20 3.51
470 533 3.614092 CTGTGTACTCAAGATTGGCCAT 58.386 45.455 6.09 0.00 0.00 4.40
471 534 2.875672 GCTGTGTACTCAAGATTGGCCA 60.876 50.000 0.00 0.00 0.00 5.36
473 536 2.704572 AGCTGTGTACTCAAGATTGGC 58.295 47.619 0.00 0.00 0.00 4.52
475 538 5.664457 TGGATAGCTGTGTACTCAAGATTG 58.336 41.667 0.00 0.00 0.00 2.67
476 539 5.939764 TGGATAGCTGTGTACTCAAGATT 57.060 39.130 0.00 0.00 0.00 2.40
477 540 6.491714 AATGGATAGCTGTGTACTCAAGAT 57.508 37.500 0.00 0.00 0.00 2.40
478 541 5.939764 AATGGATAGCTGTGTACTCAAGA 57.060 39.130 0.00 0.00 0.00 3.02
480 543 6.299805 AGAAATGGATAGCTGTGTACTCAA 57.700 37.500 0.00 0.00 0.00 3.02
481 544 5.939764 AGAAATGGATAGCTGTGTACTCA 57.060 39.130 0.00 0.00 0.00 3.41
483 546 6.183360 CCACTAGAAATGGATAGCTGTGTACT 60.183 42.308 0.00 0.00 39.87 2.73
486 549 4.716784 TCCACTAGAAATGGATAGCTGTGT 59.283 41.667 0.00 0.00 41.47 3.72
488 551 4.346418 CCTCCACTAGAAATGGATAGCTGT 59.654 45.833 0.00 0.00 45.27 4.40
489 552 4.346418 ACCTCCACTAGAAATGGATAGCTG 59.654 45.833 0.00 0.00 45.27 4.24
490 553 4.346418 CACCTCCACTAGAAATGGATAGCT 59.654 45.833 0.00 0.00 45.27 3.32
491 554 4.503991 CCACCTCCACTAGAAATGGATAGC 60.504 50.000 0.00 0.00 45.27 2.97
492 555 4.901849 TCCACCTCCACTAGAAATGGATAG 59.098 45.833 0.00 0.00 45.27 2.08
493 556 4.890988 TCCACCTCCACTAGAAATGGATA 58.109 43.478 0.00 0.00 45.27 2.59
494 557 3.713764 CTCCACCTCCACTAGAAATGGAT 59.286 47.826 0.00 0.00 45.27 3.41
499 562 1.276622 GGCTCCACCTCCACTAGAAA 58.723 55.000 0.00 0.00 34.51 2.52
500 563 0.116342 TGGCTCCACCTCCACTAGAA 59.884 55.000 0.00 0.00 40.22 2.10
501 564 0.614979 GTGGCTCCACCTCCACTAGA 60.615 60.000 7.82 0.00 46.90 2.43
513 859 1.523758 CACACCTAACAAGTGGCTCC 58.476 55.000 0.00 0.00 39.63 4.70
518 864 5.940192 TTATTCAGCACACCTAACAAGTG 57.060 39.130 0.00 0.00 41.15 3.16
519 865 6.714810 TGAATTATTCAGCACACCTAACAAGT 59.285 34.615 3.20 0.00 34.08 3.16
531 1309 7.697710 CAGTAAAAGCGATTGAATTATTCAGCA 59.302 33.333 16.30 1.94 41.38 4.41
533 1311 7.166473 GGCAGTAAAAGCGATTGAATTATTCAG 59.834 37.037 7.72 0.00 41.38 3.02
535 1313 7.196331 AGGCAGTAAAAGCGATTGAATTATTC 58.804 34.615 0.00 0.00 0.00 1.75
536 1314 7.100458 AGGCAGTAAAAGCGATTGAATTATT 57.900 32.000 0.00 0.00 0.00 1.40
537 1315 6.238759 GGAGGCAGTAAAAGCGATTGAATTAT 60.239 38.462 0.00 0.00 0.00 1.28
539 1317 4.142381 GGAGGCAGTAAAAGCGATTGAATT 60.142 41.667 0.00 0.00 0.00 2.17
540 1318 3.378427 GGAGGCAGTAAAAGCGATTGAAT 59.622 43.478 0.00 0.00 0.00 2.57
541 1319 2.747446 GGAGGCAGTAAAAGCGATTGAA 59.253 45.455 0.00 0.00 0.00 2.69
542 1320 2.027192 AGGAGGCAGTAAAAGCGATTGA 60.027 45.455 0.00 0.00 0.00 2.57
544 1322 2.749621 CAAGGAGGCAGTAAAAGCGATT 59.250 45.455 0.00 0.00 0.00 3.34
546 1324 1.808411 CAAGGAGGCAGTAAAAGCGA 58.192 50.000 0.00 0.00 0.00 4.93
547 1325 0.169009 GCAAGGAGGCAGTAAAAGCG 59.831 55.000 0.00 0.00 0.00 4.68
548 1326 1.068264 GTGCAAGGAGGCAGTAAAAGC 60.068 52.381 0.00 0.00 45.96 3.51
550 1328 2.356665 TGTGCAAGGAGGCAGTAAAA 57.643 45.000 0.00 0.00 45.96 1.52
551 1329 2.161855 CATGTGCAAGGAGGCAGTAAA 58.838 47.619 0.00 0.00 45.96 2.01
552 1330 1.614051 CCATGTGCAAGGAGGCAGTAA 60.614 52.381 0.00 0.00 45.96 2.24
553 1331 0.035152 CCATGTGCAAGGAGGCAGTA 60.035 55.000 0.00 0.00 45.96 2.74
554 1332 1.303888 CCATGTGCAAGGAGGCAGT 60.304 57.895 0.00 0.00 45.96 4.40
555 1333 2.050350 CCCATGTGCAAGGAGGCAG 61.050 63.158 2.83 0.00 45.96 4.85
556 1334 2.036098 CCCATGTGCAAGGAGGCA 59.964 61.111 2.83 0.00 42.53 4.75
558 1336 0.542702 AAACCCCATGTGCAAGGAGG 60.543 55.000 2.83 5.24 0.00 4.30
560 1338 1.133199 AGAAAACCCCATGTGCAAGGA 60.133 47.619 2.83 0.00 0.00 3.36
561 1339 1.341080 AGAAAACCCCATGTGCAAGG 58.659 50.000 0.00 0.00 0.00 3.61
562 1340 2.629617 AGAAGAAAACCCCATGTGCAAG 59.370 45.455 0.00 0.00 0.00 4.01
563 1341 2.676748 AGAAGAAAACCCCATGTGCAA 58.323 42.857 0.00 0.00 0.00 4.08
564 1342 2.380064 AGAAGAAAACCCCATGTGCA 57.620 45.000 0.00 0.00 0.00 4.57
565 1343 3.751479 AAAGAAGAAAACCCCATGTGC 57.249 42.857 0.00 0.00 0.00 4.57
566 1344 5.275067 TCAAAAGAAGAAAACCCCATGTG 57.725 39.130 0.00 0.00 0.00 3.21
567 1345 5.660864 TCTTCAAAAGAAGAAAACCCCATGT 59.339 36.000 5.52 0.00 38.15 3.21
568 1346 6.160576 TCTTCAAAAGAAGAAAACCCCATG 57.839 37.500 5.52 0.00 38.15 3.66
569 1347 7.071071 TCAATCTTCAAAAGAAGAAAACCCCAT 59.929 33.333 11.46 0.00 43.44 4.00
570 1348 6.382570 TCAATCTTCAAAAGAAGAAAACCCCA 59.617 34.615 11.46 0.00 43.44 4.96
571 1349 6.816136 TCAATCTTCAAAAGAAGAAAACCCC 58.184 36.000 11.46 0.00 43.44 4.95
575 1353 9.956720 GTCATCTCAATCTTCAAAAGAAGAAAA 57.043 29.630 11.46 1.13 43.44 2.29
578 1356 8.681486 TTGTCATCTCAATCTTCAAAAGAAGA 57.319 30.769 10.02 10.02 44.21 2.87
581 1359 6.432162 CCCTTGTCATCTCAATCTTCAAAAGA 59.568 38.462 0.00 0.00 42.69 2.52
584 1362 5.879763 TCCCTTGTCATCTCAATCTTCAAA 58.120 37.500 0.00 0.00 0.00 2.69
585 1363 5.249163 TCTCCCTTGTCATCTCAATCTTCAA 59.751 40.000 0.00 0.00 0.00 2.69
587 1365 5.128499 TCTCTCCCTTGTCATCTCAATCTTC 59.872 44.000 0.00 0.00 0.00 2.87
592 1370 5.960811 ACTTATCTCTCCCTTGTCATCTCAA 59.039 40.000 0.00 0.00 0.00 3.02
593 1371 5.523588 ACTTATCTCTCCCTTGTCATCTCA 58.476 41.667 0.00 0.00 0.00 3.27
597 1375 6.015856 CGACATACTTATCTCTCCCTTGTCAT 60.016 42.308 0.00 0.00 32.54 3.06
598 1376 5.299531 CGACATACTTATCTCTCCCTTGTCA 59.700 44.000 0.00 0.00 32.54 3.58
599 1377 5.278561 CCGACATACTTATCTCTCCCTTGTC 60.279 48.000 0.00 0.00 0.00 3.18
600 1378 4.585162 CCGACATACTTATCTCTCCCTTGT 59.415 45.833 0.00 0.00 0.00 3.16
602 1380 4.805744 ACCGACATACTTATCTCTCCCTT 58.194 43.478 0.00 0.00 0.00 3.95
603 1381 4.456662 ACCGACATACTTATCTCTCCCT 57.543 45.455 0.00 0.00 0.00 4.20
604 1382 5.532664 AAACCGACATACTTATCTCTCCC 57.467 43.478 0.00 0.00 0.00 4.30
613 1391 9.624373 TCTCTAGAAGTATAAACCGACATACTT 57.376 33.333 6.67 6.67 45.92 2.24
614 1392 9.275398 CTCTCTAGAAGTATAAACCGACATACT 57.725 37.037 0.00 0.00 39.17 2.12
616 1394 9.842775 TTCTCTCTAGAAGTATAAACCGACATA 57.157 33.333 0.00 0.00 36.80 2.29
617 1395 8.749026 TTCTCTCTAGAAGTATAAACCGACAT 57.251 34.615 0.00 0.00 36.80 3.06
632 1410 2.170817 TCACCGCTAGCTTCTCTCTAGA 59.829 50.000 13.93 0.00 36.50 2.43
633 1411 2.548057 CTCACCGCTAGCTTCTCTCTAG 59.452 54.545 13.93 0.00 37.25 2.43
634 1412 2.566913 CTCACCGCTAGCTTCTCTCTA 58.433 52.381 13.93 0.00 0.00 2.43
635 1413 1.388547 CTCACCGCTAGCTTCTCTCT 58.611 55.000 13.93 0.00 0.00 3.10
636 1414 0.383949 CCTCACCGCTAGCTTCTCTC 59.616 60.000 13.93 0.00 0.00 3.20
637 1415 0.033991 TCCTCACCGCTAGCTTCTCT 60.034 55.000 13.93 0.00 0.00 3.10
639 1417 0.033991 TCTCCTCACCGCTAGCTTCT 60.034 55.000 13.93 0.00 0.00 2.85
640 1418 0.101579 GTCTCCTCACCGCTAGCTTC 59.898 60.000 13.93 0.00 0.00 3.86
641 1419 0.612174 TGTCTCCTCACCGCTAGCTT 60.612 55.000 13.93 0.00 0.00 3.74
643 1421 0.461961 AATGTCTCCTCACCGCTAGC 59.538 55.000 4.06 4.06 0.00 3.42
644 1422 1.751351 TGAATGTCTCCTCACCGCTAG 59.249 52.381 0.00 0.00 0.00 3.42
645 1423 1.476891 GTGAATGTCTCCTCACCGCTA 59.523 52.381 0.00 0.00 36.72 4.26
646 1424 0.247736 GTGAATGTCTCCTCACCGCT 59.752 55.000 0.00 0.00 36.72 5.52
650 1428 7.396540 AATTAAATGGTGAATGTCTCCTCAC 57.603 36.000 0.00 0.00 41.05 3.51
652 1430 8.616076 CAGTAATTAAATGGTGAATGTCTCCTC 58.384 37.037 0.00 0.00 31.62 3.71
653 1431 7.557719 CCAGTAATTAAATGGTGAATGTCTCCT 59.442 37.037 9.04 0.00 31.62 3.69
655 1433 7.196331 GCCAGTAATTAAATGGTGAATGTCTC 58.804 38.462 15.82 0.00 36.43 3.36
656 1434 6.183360 CGCCAGTAATTAAATGGTGAATGTCT 60.183 38.462 19.77 0.00 45.48 3.41
657 1435 5.971202 CGCCAGTAATTAAATGGTGAATGTC 59.029 40.000 19.77 3.78 45.48 3.06
658 1436 5.678616 GCGCCAGTAATTAAATGGTGAATGT 60.679 40.000 25.17 0.00 45.48 2.71
661 1439 3.759086 TGCGCCAGTAATTAAATGGTGAA 59.241 39.130 25.17 17.25 45.48 3.18
662 1440 3.348119 TGCGCCAGTAATTAAATGGTGA 58.652 40.909 25.17 13.44 45.48 4.02
665 1443 2.358898 AGCTGCGCCAGTAATTAAATGG 59.641 45.455 4.18 11.89 37.15 3.16
666 1444 3.365832 CAGCTGCGCCAGTAATTAAATG 58.634 45.455 4.18 0.00 33.43 2.32
667 1445 2.223572 GCAGCTGCGCCAGTAATTAAAT 60.224 45.455 25.23 0.00 33.43 1.40
668 1446 1.132262 GCAGCTGCGCCAGTAATTAAA 59.868 47.619 25.23 0.00 33.43 1.52
669 1447 0.732571 GCAGCTGCGCCAGTAATTAA 59.267 50.000 25.23 0.00 33.43 1.40
670 1448 0.392327 TGCAGCTGCGCCAGTAATTA 60.392 50.000 32.11 9.12 45.83 1.40
671 1449 1.033746 ATGCAGCTGCGCCAGTAATT 61.034 50.000 32.11 6.65 45.83 1.40
672 1450 1.442526 GATGCAGCTGCGCCAGTAAT 61.443 55.000 32.11 18.81 45.83 1.89
673 1451 2.046023 ATGCAGCTGCGCCAGTAA 60.046 55.556 32.11 14.60 45.83 2.24
674 1452 2.512286 GATGCAGCTGCGCCAGTA 60.512 61.111 32.11 15.38 45.83 2.74
676 1454 3.745240 TAGGATGCAGCTGCGCCAG 62.745 63.158 36.70 7.56 45.83 4.85
677 1455 3.784719 TAGGATGCAGCTGCGCCA 61.785 61.111 36.70 25.33 45.83 5.69
678 1456 3.275338 GTAGGATGCAGCTGCGCC 61.275 66.667 31.96 31.96 45.83 6.53
681 1459 0.873743 GACGAGTAGGATGCAGCTGC 60.874 60.000 31.89 31.89 42.50 5.25
682 1460 0.249238 GGACGAGTAGGATGCAGCTG 60.249 60.000 10.11 10.11 0.00 4.24
683 1461 1.395826 GGGACGAGTAGGATGCAGCT 61.396 60.000 0.22 0.00 0.00 4.24
686 1464 1.496060 AATGGGACGAGTAGGATGCA 58.504 50.000 0.00 0.00 0.00 3.96
687 1465 2.622064 AAATGGGACGAGTAGGATGC 57.378 50.000 0.00 0.00 0.00 3.91
688 1466 5.853936 TGATAAAATGGGACGAGTAGGATG 58.146 41.667 0.00 0.00 0.00 3.51
689 1467 6.494666 TTGATAAAATGGGACGAGTAGGAT 57.505 37.500 0.00 0.00 0.00 3.24
690 1468 5.684030 GCTTGATAAAATGGGACGAGTAGGA 60.684 44.000 0.00 0.00 0.00 2.94
691 1469 4.511826 GCTTGATAAAATGGGACGAGTAGG 59.488 45.833 0.00 0.00 0.00 3.18
692 1470 4.209288 CGCTTGATAAAATGGGACGAGTAG 59.791 45.833 0.00 0.00 0.00 2.57
693 1471 4.116961 CGCTTGATAAAATGGGACGAGTA 58.883 43.478 0.00 0.00 0.00 2.59
695 1473 2.287915 CCGCTTGATAAAATGGGACGAG 59.712 50.000 0.00 0.00 0.00 4.18
696 1474 2.285083 CCGCTTGATAAAATGGGACGA 58.715 47.619 0.00 0.00 0.00 4.20
697 1475 1.333619 CCCGCTTGATAAAATGGGACG 59.666 52.381 0.00 0.00 39.03 4.79
698 1476 2.650322 TCCCGCTTGATAAAATGGGAC 58.350 47.619 0.00 0.00 40.65 4.46
699 1477 3.053991 TCTTCCCGCTTGATAAAATGGGA 60.054 43.478 0.00 0.00 43.72 4.37
700 1478 3.287222 TCTTCCCGCTTGATAAAATGGG 58.713 45.455 0.00 0.00 38.02 4.00
701 1479 4.199310 TCTCTTCCCGCTTGATAAAATGG 58.801 43.478 0.00 0.00 0.00 3.16
702 1480 5.818136 TTCTCTTCCCGCTTGATAAAATG 57.182 39.130 0.00 0.00 0.00 2.32
703 1481 6.434340 ACTTTTCTCTTCCCGCTTGATAAAAT 59.566 34.615 0.00 0.00 0.00 1.82
704 1482 5.768164 ACTTTTCTCTTCCCGCTTGATAAAA 59.232 36.000 0.00 0.00 0.00 1.52
705 1483 5.313712 ACTTTTCTCTTCCCGCTTGATAAA 58.686 37.500 0.00 0.00 0.00 1.40
706 1484 4.906618 ACTTTTCTCTTCCCGCTTGATAA 58.093 39.130 0.00 0.00 0.00 1.75
707 1485 4.553330 ACTTTTCTCTTCCCGCTTGATA 57.447 40.909 0.00 0.00 0.00 2.15
708 1486 3.425162 ACTTTTCTCTTCCCGCTTGAT 57.575 42.857 0.00 0.00 0.00 2.57
709 1487 2.930826 ACTTTTCTCTTCCCGCTTGA 57.069 45.000 0.00 0.00 0.00 3.02
710 1488 3.665190 ACTACTTTTCTCTTCCCGCTTG 58.335 45.455 0.00 0.00 0.00 4.01
711 1489 4.771054 TCTACTACTTTTCTCTTCCCGCTT 59.229 41.667 0.00 0.00 0.00 4.68
712 1490 4.342359 TCTACTACTTTTCTCTTCCCGCT 58.658 43.478 0.00 0.00 0.00 5.52
713 1491 4.715527 TCTACTACTTTTCTCTTCCCGC 57.284 45.455 0.00 0.00 0.00 6.13
714 1492 6.512342 TCTTCTACTACTTTTCTCTTCCCG 57.488 41.667 0.00 0.00 0.00 5.14
716 1494 9.634163 CTTCTTCTTCTACTACTTTTCTCTTCC 57.366 37.037 0.00 0.00 0.00 3.46
723 1501 9.785982 ATGCTTTCTTCTTCTTCTACTACTTTT 57.214 29.630 0.00 0.00 0.00 2.27
725 1503 9.213799 CAATGCTTTCTTCTTCTTCTACTACTT 57.786 33.333 0.00 0.00 0.00 2.24
726 1504 7.333174 GCAATGCTTTCTTCTTCTTCTACTACT 59.667 37.037 0.00 0.00 0.00 2.57
729 1507 5.414144 GGCAATGCTTTCTTCTTCTTCTACT 59.586 40.000 4.82 0.00 0.00 2.57
730 1508 5.414144 AGGCAATGCTTTCTTCTTCTTCTAC 59.586 40.000 4.82 0.00 0.00 2.59
732 1510 4.217983 CAGGCAATGCTTTCTTCTTCTTCT 59.782 41.667 4.82 0.00 0.00 2.85
733 1511 4.483311 CAGGCAATGCTTTCTTCTTCTTC 58.517 43.478 4.82 0.00 0.00 2.87
734 1512 4.516365 CAGGCAATGCTTTCTTCTTCTT 57.484 40.909 4.82 0.00 0.00 2.52
747 1525 1.142465 AGGAGTAGGATGCAGGCAATG 59.858 52.381 0.00 0.00 0.00 2.82
748 1526 1.419387 GAGGAGTAGGATGCAGGCAAT 59.581 52.381 0.00 0.00 0.00 3.56
750 1528 1.050988 GGAGGAGTAGGATGCAGGCA 61.051 60.000 0.00 0.00 0.00 4.75
751 1529 0.762461 AGGAGGAGTAGGATGCAGGC 60.762 60.000 0.00 0.00 0.00 4.85
753 1531 2.079170 TGAGGAGGAGTAGGATGCAG 57.921 55.000 0.00 0.00 0.00 4.41
754 1532 2.603021 GATGAGGAGGAGTAGGATGCA 58.397 52.381 0.00 0.00 0.00 3.96
756 1534 2.556189 CACGATGAGGAGGAGTAGGATG 59.444 54.545 0.00 0.00 0.00 3.51
758 1536 1.564818 ACACGATGAGGAGGAGTAGGA 59.435 52.381 0.00 0.00 0.00 2.94
759 1537 2.060050 ACACGATGAGGAGGAGTAGG 57.940 55.000 0.00 0.00 0.00 3.18
760 1538 3.003897 GCTTACACGATGAGGAGGAGTAG 59.996 52.174 0.00 0.00 0.00 2.57
761 1539 2.950309 GCTTACACGATGAGGAGGAGTA 59.050 50.000 0.00 0.00 0.00 2.59
762 1540 1.751924 GCTTACACGATGAGGAGGAGT 59.248 52.381 0.00 0.00 0.00 3.85
763 1541 1.751351 TGCTTACACGATGAGGAGGAG 59.249 52.381 0.00 0.00 0.00 3.69
764 1542 1.751351 CTGCTTACACGATGAGGAGGA 59.249 52.381 0.00 0.00 29.63 3.71
775 1689 1.076332 CCGGTGCTTACTGCTTACAC 58.924 55.000 0.00 0.00 43.37 2.90
795 1941 3.299190 CGGCGGAGGAGGAGGATC 61.299 72.222 0.00 0.00 0.00 3.36
815 1963 1.300233 GGCTCGCTATGGACGGAAG 60.300 63.158 0.00 0.00 0.00 3.46
816 1964 2.792947 GGGCTCGCTATGGACGGAA 61.793 63.158 0.00 0.00 0.00 4.30
817 1965 3.224324 GGGCTCGCTATGGACGGA 61.224 66.667 0.00 0.00 0.00 4.69
819 1967 4.647615 CGGGGCTCGCTATGGACG 62.648 72.222 0.00 0.00 0.00 4.79
820 1968 4.301027 CCGGGGCTCGCTATGGAC 62.301 72.222 0.00 0.00 37.59 4.02
821 1969 4.533124 TCCGGGGCTCGCTATGGA 62.533 66.667 0.00 0.00 37.59 3.41
822 1970 2.788191 GATTCCGGGGCTCGCTATGG 62.788 65.000 0.00 0.00 37.59 2.74
823 1971 1.374758 GATTCCGGGGCTCGCTATG 60.375 63.158 0.00 0.00 37.59 2.23
824 1972 1.194781 ATGATTCCGGGGCTCGCTAT 61.195 55.000 0.00 0.00 37.59 2.97
825 1973 1.816863 GATGATTCCGGGGCTCGCTA 61.817 60.000 0.00 0.00 37.59 4.26
826 1974 3.164269 ATGATTCCGGGGCTCGCT 61.164 61.111 0.00 0.00 37.59 4.93
827 1975 2.666526 GATGATTCCGGGGCTCGC 60.667 66.667 0.00 0.00 37.59 5.03
828 1976 2.031163 GGATGATTCCGGGGCTCG 59.969 66.667 0.00 0.00 38.88 5.03
829 1977 1.227973 GTGGATGATTCCGGGGCTC 60.228 63.158 0.00 0.00 45.89 4.70
830 1978 1.355718 ATGTGGATGATTCCGGGGCT 61.356 55.000 0.00 0.00 45.89 5.19
831 1979 1.151450 ATGTGGATGATTCCGGGGC 59.849 57.895 0.00 0.00 45.89 5.80
832 1980 0.183492 ACATGTGGATGATTCCGGGG 59.817 55.000 0.00 0.00 45.89 5.73
833 1981 2.928801 TACATGTGGATGATTCCGGG 57.071 50.000 9.11 0.00 45.89 5.73
834 1982 3.743521 ACATACATGTGGATGATTCCGG 58.256 45.455 14.22 0.00 45.89 5.14
835 1983 4.635223 AGACATACATGTGGATGATTCCG 58.365 43.478 14.22 0.00 45.89 4.30
836 1984 4.999950 GGAGACATACATGTGGATGATTCC 59.000 45.833 14.22 14.40 41.95 3.01
837 1985 5.862845 AGGAGACATACATGTGGATGATTC 58.137 41.667 14.22 10.46 41.95 2.52
838 1986 5.221803 GGAGGAGACATACATGTGGATGATT 60.222 44.000 14.22 3.31 41.95 2.57
839 1987 4.285517 GGAGGAGACATACATGTGGATGAT 59.714 45.833 14.22 3.86 41.95 2.45
840 1988 3.643320 GGAGGAGACATACATGTGGATGA 59.357 47.826 14.22 0.00 41.95 2.92
841 1989 3.389002 TGGAGGAGACATACATGTGGATG 59.611 47.826 9.11 7.86 41.95 3.51
842 1990 3.657610 TGGAGGAGACATACATGTGGAT 58.342 45.455 9.11 0.00 41.95 3.41
843 1991 3.114643 TGGAGGAGACATACATGTGGA 57.885 47.619 9.11 0.00 41.95 4.02
844 1992 3.912496 TTGGAGGAGACATACATGTGG 57.088 47.619 9.11 2.98 41.95 4.17
845 1993 4.836825 AGTTTGGAGGAGACATACATGTG 58.163 43.478 9.11 0.00 41.95 3.21
846 1994 4.532126 TGAGTTTGGAGGAGACATACATGT 59.468 41.667 2.69 2.69 45.16 3.21
847 1995 5.089970 TGAGTTTGGAGGAGACATACATG 57.910 43.478 0.00 0.00 0.00 3.21
848 1996 5.762179 TTGAGTTTGGAGGAGACATACAT 57.238 39.130 0.00 0.00 0.00 2.29
849 1997 5.491070 CATTGAGTTTGGAGGAGACATACA 58.509 41.667 0.00 0.00 0.00 2.29
850 1998 4.333926 GCATTGAGTTTGGAGGAGACATAC 59.666 45.833 0.00 0.00 0.00 2.39
851 1999 4.225942 AGCATTGAGTTTGGAGGAGACATA 59.774 41.667 0.00 0.00 0.00 2.29
852 2000 3.009916 AGCATTGAGTTTGGAGGAGACAT 59.990 43.478 0.00 0.00 0.00 3.06
853 2001 2.373169 AGCATTGAGTTTGGAGGAGACA 59.627 45.455 0.00 0.00 0.00 3.41
854 2002 3.064900 AGCATTGAGTTTGGAGGAGAC 57.935 47.619 0.00 0.00 0.00 3.36
855 2003 3.369892 GCTAGCATTGAGTTTGGAGGAGA 60.370 47.826 10.63 0.00 0.00 3.71
856 2004 2.941720 GCTAGCATTGAGTTTGGAGGAG 59.058 50.000 10.63 0.00 0.00 3.69
857 2005 2.305635 TGCTAGCATTGAGTTTGGAGGA 59.694 45.455 14.93 0.00 0.00 3.71
858 2006 2.715046 TGCTAGCATTGAGTTTGGAGG 58.285 47.619 14.93 0.00 0.00 4.30
859 2007 4.978083 AATGCTAGCATTGAGTTTGGAG 57.022 40.909 36.02 0.00 44.05 3.86
860 2008 5.726980 AAAATGCTAGCATTGAGTTTGGA 57.273 34.783 36.84 4.54 44.86 3.53
886 2034 4.802999 CTTGCTTCTGAGAAAATGGAACC 58.197 43.478 0.00 0.00 0.00 3.62
887 2035 4.233005 GCTTGCTTCTGAGAAAATGGAAC 58.767 43.478 0.00 0.00 0.00 3.62
923 2075 5.376854 AGACAATAATGGTGTGAGCAAAC 57.623 39.130 0.00 0.00 0.00 2.93
978 2138 4.798882 TGGGAACACTAAGGAAAACACAT 58.201 39.130 0.00 0.00 33.40 3.21
1053 2213 3.144506 CAGGCTGCTGGATACCTTATTG 58.855 50.000 0.00 0.00 0.00 1.90
1054 2214 2.487986 GCAGGCTGCTGGATACCTTATT 60.488 50.000 31.37 0.00 40.96 1.40
1056 2216 0.469917 GCAGGCTGCTGGATACCTTA 59.530 55.000 31.37 0.00 40.96 2.69
1125 2285 2.570181 GCAGGAAGCTTGCGCATT 59.430 55.556 22.49 1.47 41.15 3.56
1171 2331 2.262774 CTTCTCAGGGATGCCGCCTT 62.263 60.000 0.00 0.00 0.00 4.35
1184 2344 2.659016 CCGCTGCACCTCTTCTCA 59.341 61.111 0.00 0.00 0.00 3.27
1185 2345 2.817396 GCCGCTGCACCTCTTCTC 60.817 66.667 0.00 0.00 37.47 2.87
1278 2459 1.290009 CTCCTTTTTGGCCTTGCGG 59.710 57.895 3.32 0.00 35.26 5.69
1329 2510 2.358322 TGTGGGTGGGAAAGAGTTTC 57.642 50.000 0.00 0.00 38.94 2.78
1359 2540 2.420129 CCTTCCCATCCTGTTACGGAAG 60.420 54.545 7.09 7.09 46.09 3.46
1450 2631 2.435059 GACCAGCGGCTGTTCCTC 60.435 66.667 26.79 12.57 0.00 3.71
1453 2634 2.435059 GGAGACCAGCGGCTGTTC 60.435 66.667 26.79 22.77 0.00 3.18
1467 2651 2.093973 AGTCTGCCGTAATTGACTGGAG 60.094 50.000 0.00 0.00 38.22 3.86
1499 2683 2.338809 TGATTTCCTCTGGGTCAGTGT 58.661 47.619 0.00 0.00 32.61 3.55
1521 2705 5.535406 GGCTCTGGATTCATTGATGATTTCT 59.465 40.000 0.00 0.00 36.56 2.52
1668 6854 3.829886 TGCTTCTTAATTGCAGGTTCG 57.170 42.857 0.00 0.00 32.55 3.95
1769 6955 7.134362 TCTTTGCTATCATCCTTCTTCTCAT 57.866 36.000 0.00 0.00 0.00 2.90
1794 6980 0.473755 TCTTCTTGGAAGTGGCTGCA 59.526 50.000 0.50 0.00 0.00 4.41
1820 7054 7.061210 CGCTTACTACATTCTGAAGAATATCCG 59.939 40.741 5.26 0.00 42.41 4.18
1876 7110 1.070134 CTCAACCTGTCGTTCCCAGAA 59.930 52.381 0.00 0.00 29.93 3.02
1894 7128 3.269178 CCTTGAGCTGTCTCCAAATCTC 58.731 50.000 0.00 0.00 38.58 2.75
1990 7224 3.459598 AGATTGTAAGCTCCAATAGGGCA 59.540 43.478 10.58 0.00 32.84 5.36
2082 7320 0.614979 ACTCGCTAGGCCTTTCCTCA 60.615 55.000 12.58 0.00 43.20 3.86
2096 7334 0.958822 AACCATTTCCACCAACTCGC 59.041 50.000 0.00 0.00 0.00 5.03
2109 7347 9.286170 CATCTCTTCATAATCTCATCAACCATT 57.714 33.333 0.00 0.00 0.00 3.16
2125 7363 4.288105 AGGAGAACCAACACATCTCTTCAT 59.712 41.667 0.00 0.00 39.59 2.57
2198 7436 6.126940 GCTGATTGATATAGCCTCCCATTCTA 60.127 42.308 0.00 0.00 0.00 2.10
2248 7486 6.946340 TGAGCTTGAGTATTGGTAAGATTCA 58.054 36.000 0.00 0.00 0.00 2.57
2325 7563 7.286316 ACATCAATCTCATAATCCTTGGGAAAC 59.714 37.037 0.00 0.00 34.34 2.78
2408 7649 5.350633 TCTGTTTGCCAATTGTTTCAAGAG 58.649 37.500 4.43 6.08 0.00 2.85
2418 7659 6.072893 GCTCATGAAAAATCTGTTTGCCAATT 60.073 34.615 0.00 0.00 0.00 2.32
2445 7686 3.415212 CTGAAAGAATGACCTTGAGGCA 58.585 45.455 0.00 0.00 35.06 4.75
2486 7727 7.581213 TTGTATTCAATTTCCTCAACACAGT 57.419 32.000 0.00 0.00 0.00 3.55
2488 7729 7.377398 CCATTGTATTCAATTTCCTCAACACA 58.623 34.615 0.00 0.00 41.66 3.72
2489 7730 6.311200 GCCATTGTATTCAATTTCCTCAACAC 59.689 38.462 0.00 0.00 41.66 3.32
2490 7731 6.211184 AGCCATTGTATTCAATTTCCTCAACA 59.789 34.615 0.00 0.00 41.66 3.33
2568 7843 7.468631 GCACACTCCTTTTTCATTACAGAAAGA 60.469 37.037 0.00 0.00 38.60 2.52
2595 7870 3.283259 GCTGGTTCCTTAGTAGCCAAT 57.717 47.619 0.00 0.00 0.00 3.16
2601 7876 4.534500 TCAATCTTGGCTGGTTCCTTAGTA 59.466 41.667 0.00 0.00 0.00 1.82
2629 7904 3.358111 TGGTTCCTCACTTGTGACAAA 57.642 42.857 0.00 0.00 0.00 2.83
2639 7914 2.365617 TCACTCTGACTTGGTTCCTCAC 59.634 50.000 0.00 0.00 0.00 3.51
2670 7945 3.764885 AATAAATGCCGAGCTGTGTTC 57.235 42.857 0.00 0.00 0.00 3.18
2835 8143 6.312918 GCGAAAATGATCTACTACCTGAACAA 59.687 38.462 0.00 0.00 0.00 2.83
2847 8155 2.100749 TGCTCTCGGCGAAAATGATCTA 59.899 45.455 12.13 0.00 45.43 1.98
2861 8169 4.033358 GGTGATGTAGATGTTTTGCTCTCG 59.967 45.833 0.00 0.00 0.00 4.04
2864 8172 4.937620 TCAGGTGATGTAGATGTTTTGCTC 59.062 41.667 0.00 0.00 0.00 4.26
2866 8174 4.095483 CCTCAGGTGATGTAGATGTTTTGC 59.905 45.833 0.00 0.00 0.00 3.68
2918 8229 4.057432 GCTCATATCTTCAGGAAGTGCTC 58.943 47.826 8.75 0.00 39.38 4.26
2946 8257 4.951094 AGGTTAAGTGTTTGCAGGTTGTAA 59.049 37.500 0.00 0.00 0.00 2.41
2964 8275 5.273208 AGAGATTTACAGCCAGAGAGGTTA 58.727 41.667 0.00 0.00 40.61 2.85
2989 8304 5.007724 ACTTCATTTGTCTCGGAAGTGTTTC 59.992 40.000 5.20 0.00 45.87 2.78
2991 8306 4.451900 ACTTCATTTGTCTCGGAAGTGTT 58.548 39.130 5.20 0.00 45.87 3.32
2993 8308 7.706607 TCATATACTTCATTTGTCTCGGAAGTG 59.293 37.037 14.24 0.65 46.70 3.16
3058 8373 2.356125 GGTCTCTAGGCATGCCTTTCAA 60.356 50.000 42.49 24.58 45.70 2.69
3175 8490 8.083828 AGATGATGTAAATCTAGTTGACCACT 57.916 34.615 0.00 0.00 39.87 4.00
3189 8504 9.338622 TCTATCACGTTCTCTAGATGATGTAAA 57.661 33.333 13.65 2.12 32.42 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.