Multiple sequence alignment - TraesCS7B01G453100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G453100 chr7B 100.000 3063 0 0 1 3063 714459299 714456237 0.000000e+00 5657
1 TraesCS7B01G453100 chr7B 88.824 1360 136 12 78 1430 714299151 714297801 0.000000e+00 1655
2 TraesCS7B01G453100 chr7B 87.106 1365 162 10 76 1431 714520132 714518773 0.000000e+00 1533
3 TraesCS7B01G453100 chr7B 85.955 1367 176 10 78 1434 714595944 714594584 0.000000e+00 1447
4 TraesCS7B01G453100 chr7B 85.599 1361 174 11 78 1431 714473085 714471740 0.000000e+00 1408
5 TraesCS7B01G453100 chr7B 87.489 1159 132 7 78 1226 714328509 714327354 0.000000e+00 1325
6 TraesCS7B01G453100 chr7B 89.492 866 63 14 1822 2664 714326674 714325814 0.000000e+00 1070
7 TraesCS7B01G453100 chr7B 88.643 722 54 9 1822 2525 714296914 714296203 0.000000e+00 854
8 TraesCS7B01G453100 chr7B 87.660 624 31 11 1845 2446 714471597 714470998 0.000000e+00 684
9 TraesCS7B01G453100 chr7B 78.388 1129 189 38 2 1099 714358151 714357047 0.000000e+00 682
10 TraesCS7B01G453100 chr7B 86.067 567 63 4 872 1431 714297468 714296911 2.030000e-166 595
11 TraesCS7B01G453100 chr7B 91.525 413 30 5 1434 1841 649993680 649993268 5.730000e-157 564
12 TraesCS7B01G453100 chr7B 89.107 459 36 6 2494 2942 714470984 714470530 2.670000e-155 558
13 TraesCS7B01G453100 chr7B 90.418 407 32 6 1434 1834 638116568 638116973 2.090000e-146 529
14 TraesCS7B01G453100 chr7B 90.418 407 32 6 1434 1834 638127250 638127655 2.090000e-146 529
15 TraesCS7B01G453100 chr7B 93.155 336 19 3 1822 2156 714297803 714297471 9.870000e-135 490
16 TraesCS7B01G453100 chr7B 76.220 820 156 29 296 1098 714604654 714603857 6.150000e-107 398
17 TraesCS7B01G453100 chr7B 81.928 498 55 12 1820 2294 714518778 714518293 3.700000e-104 388
18 TraesCS7B01G453100 chr7B 76.417 653 121 23 296 934 714628585 714627952 3.810000e-84 322
19 TraesCS7B01G453100 chr7B 91.089 202 16 2 2593 2793 714296183 714295983 3.890000e-69 272
20 TraesCS7B01G453100 chr7B 81.107 307 54 4 1125 1429 714356973 714356669 3.050000e-60 243
21 TraesCS7B01G453100 chr7B 86.697 218 25 4 1216 1431 714326886 714326671 3.950000e-59 239
22 TraesCS7B01G453100 chr7B 90.909 154 13 1 2659 2811 714320423 714320270 4.000000e-49 206
23 TraesCS7B01G453100 chr7D 87.279 1360 163 6 79 1431 619154185 619152829 0.000000e+00 1544
24 TraesCS7B01G453100 chr7D 82.752 487 52 11 1822 2280 619152832 619152350 3.680000e-109 405
25 TraesCS7B01G453100 chr7A 87.097 1364 146 16 78 1431 713120514 713119171 0.000000e+00 1517
26 TraesCS7B01G453100 chr7A 85.097 1181 161 10 256 1425 713052570 713051394 0.000000e+00 1192
27 TraesCS7B01G453100 chr7A 82.219 1361 217 18 82 1431 713104830 713103484 0.000000e+00 1149
28 TraesCS7B01G453100 chr7A 84.335 549 78 5 256 798 713009575 713009029 5.820000e-147 531
29 TraesCS7B01G453100 chr7A 78.228 790 88 52 1820 2542 713119176 713118404 2.180000e-116 429
30 TraesCS7B01G453100 chr2B 91.463 410 27 7 1432 1834 366974890 366975298 9.590000e-155 556
31 TraesCS7B01G453100 chr2B 92.632 95 5 2 2966 3059 175071552 175071645 5.330000e-28 135
32 TraesCS7B01G453100 chr1D 91.899 395 28 4 1431 1822 156288560 156288953 1.610000e-152 549
33 TraesCS7B01G453100 chr5B 90.843 415 24 9 1428 1834 346508570 346508162 7.470000e-151 544
34 TraesCS7B01G453100 chr5B 90.931 408 30 6 1434 1836 454422700 454422295 2.690000e-150 542
35 TraesCS7B01G453100 chr5B 90.385 416 32 6 1429 1837 696758745 696758331 9.660000e-150 540
36 TraesCS7B01G453100 chr5B 92.135 89 7 0 2970 3058 566055133 566055221 3.210000e-25 126
37 TraesCS7B01G453100 chr5D 90.909 407 31 5 1434 1834 10759742 10760148 2.690000e-150 542
38 TraesCS7B01G453100 chr6B 95.604 91 2 1 2971 3061 144730770 144730858 8.850000e-31 145
39 TraesCS7B01G453100 chr6B 89.583 96 8 2 2967 3061 11346480 11346386 1.490000e-23 121
40 TraesCS7B01G453100 chr3B 94.382 89 5 0 2970 3058 783156218 783156130 1.480000e-28 137
41 TraesCS7B01G453100 chr3B 91.176 102 6 3 2960 3058 783161070 783160969 5.330000e-28 135
42 TraesCS7B01G453100 chr4B 92.308 91 7 0 2967 3057 581320393 581320303 2.480000e-26 130
43 TraesCS7B01G453100 chr4B 92.135 89 7 0 2970 3058 642422640 642422552 3.210000e-25 126
44 TraesCS7B01G453100 chrUn 93.827 81 5 0 2978 3058 420033321 420033241 4.150000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G453100 chr7B 714456237 714459299 3062 True 5657.000000 5657 100.000000 1 3063 1 chr7B.!!$R3 3062
1 TraesCS7B01G453100 chr7B 714594584 714595944 1360 True 1447.000000 1447 85.955000 78 1434 1 chr7B.!!$R4 1356
2 TraesCS7B01G453100 chr7B 714518293 714520132 1839 True 960.500000 1533 84.517000 76 2294 2 chr7B.!!$R11 2218
3 TraesCS7B01G453100 chr7B 714470530 714473085 2555 True 883.333333 1408 87.455333 78 2942 3 chr7B.!!$R10 2864
4 TraesCS7B01G453100 chr7B 714325814 714328509 2695 True 878.000000 1325 87.892667 78 2664 3 chr7B.!!$R8 2586
5 TraesCS7B01G453100 chr7B 714295983 714299151 3168 True 773.200000 1655 89.555600 78 2793 5 chr7B.!!$R7 2715
6 TraesCS7B01G453100 chr7B 714356669 714358151 1482 True 462.500000 682 79.747500 2 1429 2 chr7B.!!$R9 1427
7 TraesCS7B01G453100 chr7B 714603857 714604654 797 True 398.000000 398 76.220000 296 1098 1 chr7B.!!$R5 802
8 TraesCS7B01G453100 chr7B 714627952 714628585 633 True 322.000000 322 76.417000 296 934 1 chr7B.!!$R6 638
9 TraesCS7B01G453100 chr7D 619152350 619154185 1835 True 974.500000 1544 85.015500 79 2280 2 chr7D.!!$R1 2201
10 TraesCS7B01G453100 chr7A 713051394 713052570 1176 True 1192.000000 1192 85.097000 256 1425 1 chr7A.!!$R2 1169
11 TraesCS7B01G453100 chr7A 713103484 713104830 1346 True 1149.000000 1149 82.219000 82 1431 1 chr7A.!!$R3 1349
12 TraesCS7B01G453100 chr7A 713118404 713120514 2110 True 973.000000 1517 82.662500 78 2542 2 chr7A.!!$R4 2464
13 TraesCS7B01G453100 chr7A 713009029 713009575 546 True 531.000000 531 84.335000 256 798 1 chr7A.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 255 0.659427 CAGCAGTGGCCGTGATAATG 59.341 55.0 9.09 0.0 42.56 1.90 F
1476 2038 0.107993 CAGATGCTCCCGCTCAGAAA 60.108 55.0 0.00 0.0 36.97 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 2268 0.036388 GATGCGTGAGGTTCCCTGAA 60.036 55.0 0.0 0.0 31.76 3.02 R
2988 4659 0.173481 GAAAATCGGAAGGGGCAAGC 59.827 55.0 0.0 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.706270 TGAAGGAACTAACAGAACTGACATTC 59.294 38.462 8.87 6.58 38.49 2.67
27 28 6.591935 AGGAACTAACAGAACTGACATTCAA 58.408 36.000 8.87 0.00 36.02 2.69
34 35 5.380043 ACAGAACTGACATTCAAATGGACT 58.620 37.500 8.87 0.00 40.70 3.85
42 43 3.573967 ACATTCAAATGGACTGTTGGACC 59.426 43.478 7.58 0.00 36.09 4.46
47 48 1.874129 ATGGACTGTTGGACCGGATA 58.126 50.000 9.46 0.00 0.00 2.59
49 50 1.276989 TGGACTGTTGGACCGGATAAC 59.723 52.381 9.46 10.82 0.00 1.89
50 51 1.636988 GACTGTTGGACCGGATAACG 58.363 55.000 9.46 9.01 43.80 3.18
53 54 1.730064 CTGTTGGACCGGATAACGTTG 59.270 52.381 9.46 0.00 42.24 4.10
54 55 1.070445 TGTTGGACCGGATAACGTTGT 59.930 47.619 9.46 3.45 42.24 3.32
56 57 1.798283 TGGACCGGATAACGTTGTTG 58.202 50.000 9.46 1.07 42.24 3.33
57 58 1.343789 TGGACCGGATAACGTTGTTGA 59.656 47.619 9.46 0.00 42.24 3.18
58 59 2.027929 TGGACCGGATAACGTTGTTGAT 60.028 45.455 9.46 0.00 42.24 2.57
61 62 3.259064 ACCGGATAACGTTGTTGATGAG 58.741 45.455 9.46 0.00 42.24 2.90
62 63 2.030457 CCGGATAACGTTGTTGATGAGC 59.970 50.000 11.99 0.00 42.24 4.26
67 68 1.726853 ACGTTGTTGATGAGCCTAGC 58.273 50.000 0.00 0.00 0.00 3.42
68 69 1.001974 ACGTTGTTGATGAGCCTAGCA 59.998 47.619 0.00 0.00 0.00 3.49
69 70 1.662629 CGTTGTTGATGAGCCTAGCAG 59.337 52.381 0.00 0.00 0.00 4.24
71 72 2.675348 GTTGTTGATGAGCCTAGCAGTC 59.325 50.000 0.00 0.00 0.00 3.51
145 149 4.471386 GCCATAGGGATACACTCATATGGT 59.529 45.833 13.23 0.00 42.16 3.55
149 153 2.612972 GGGATACACTCATATGGTGCCG 60.613 54.545 18.61 5.25 38.14 5.69
184 188 6.343716 ACATGGATGACTATGTTGCAAAAA 57.656 33.333 0.00 0.00 43.78 1.94
236 240 1.401761 ACTGCAATGGTTGTTCAGCA 58.598 45.000 0.00 0.00 37.28 4.41
251 255 0.659427 CAGCAGTGGCCGTGATAATG 59.341 55.000 9.09 0.00 42.56 1.90
277 281 5.908341 ACCTTCGCATTTCCAAAACTAAAA 58.092 33.333 0.00 0.00 0.00 1.52
279 283 5.107491 CCTTCGCATTTCCAAAACTAAAAGC 60.107 40.000 0.00 0.00 0.00 3.51
334 338 6.865834 AGATGGTGGGAGATAGATAATGAC 57.134 41.667 0.00 0.00 0.00 3.06
335 339 6.326161 AGATGGTGGGAGATAGATAATGACA 58.674 40.000 0.00 0.00 0.00 3.58
345 349 7.117523 GGAGATAGATAATGACAAGATGCACAC 59.882 40.741 0.00 0.00 0.00 3.82
350 354 4.494350 AATGACAAGATGCACACAGAAC 57.506 40.909 0.00 0.00 0.00 3.01
412 422 4.275443 TGTGAAAATTTGAAAGCATTGCCC 59.725 37.500 4.70 0.00 0.00 5.36
506 519 6.515272 AATCACCAAAGCTTAGTGTATTGG 57.485 37.500 22.21 16.40 44.75 3.16
636 649 2.647299 TGGGGGCTGAGAATAGTTTGAA 59.353 45.455 0.00 0.00 0.00 2.69
691 721 7.792032 TCAAGACTTTCCTCTAGAAGTTTTGA 58.208 34.615 17.78 17.78 36.08 2.69
692 722 8.265055 TCAAGACTTTCCTCTAGAAGTTTTGAA 58.735 33.333 18.74 8.51 35.84 2.69
921 954 1.620819 TCAGAAACCAGTCAGCTCCTC 59.379 52.381 0.00 0.00 0.00 3.71
948 981 4.804665 CGTCTAGAGTCTCTGACGATACAA 59.195 45.833 30.45 6.15 43.68 2.41
1182 1266 8.314751 TCCCTCAAGAGACTAGAAATTGTTAAG 58.685 37.037 0.00 0.00 0.00 1.85
1204 1288 1.133181 TGGTGGGTTGGCATCTCTGA 61.133 55.000 0.00 0.00 0.00 3.27
1312 1874 6.519382 CAAGCATACTCATCTCTCCAACATA 58.481 40.000 0.00 0.00 0.00 2.29
1320 1882 6.485984 ACTCATCTCTCCAACATATTTGCATC 59.514 38.462 0.00 0.00 0.00 3.91
1438 2000 2.774864 GCACGCAGCAATCAAAAATC 57.225 45.000 0.00 0.00 44.79 2.17
1439 2001 1.391144 GCACGCAGCAATCAAAAATCC 59.609 47.619 0.00 0.00 44.79 3.01
1440 2002 1.650153 CACGCAGCAATCAAAAATCCG 59.350 47.619 0.00 0.00 0.00 4.18
1441 2003 0.641783 CGCAGCAATCAAAAATCCGC 59.358 50.000 0.00 0.00 0.00 5.54
1442 2004 0.641783 GCAGCAATCAAAAATCCGCG 59.358 50.000 0.00 0.00 0.00 6.46
1443 2005 1.981254 CAGCAATCAAAAATCCGCGT 58.019 45.000 4.92 0.00 0.00 6.01
1444 2006 1.913403 CAGCAATCAAAAATCCGCGTC 59.087 47.619 4.92 0.00 0.00 5.19
1445 2007 1.812571 AGCAATCAAAAATCCGCGTCT 59.187 42.857 4.92 0.00 0.00 4.18
1446 2008 1.913403 GCAATCAAAAATCCGCGTCTG 59.087 47.619 4.92 0.00 0.00 3.51
1447 2009 2.414029 GCAATCAAAAATCCGCGTCTGA 60.414 45.455 4.92 0.00 0.00 3.27
1448 2010 3.419915 CAATCAAAAATCCGCGTCTGAG 58.580 45.455 4.92 0.00 0.00 3.35
1449 2011 0.796312 TCAAAAATCCGCGTCTGAGC 59.204 50.000 4.92 0.00 0.00 4.26
1450 2012 0.179189 CAAAAATCCGCGTCTGAGCC 60.179 55.000 4.92 0.00 0.00 4.70
1451 2013 1.305930 AAAAATCCGCGTCTGAGCCC 61.306 55.000 4.92 0.00 0.00 5.19
1452 2014 4.514577 AATCCGCGTCTGAGCCCG 62.515 66.667 4.92 0.00 0.00 6.13
1465 2027 4.925861 GCCCGGGCTCAGATGCTC 62.926 72.222 38.76 4.71 38.26 4.26
1466 2028 4.247380 CCCGGGCTCAGATGCTCC 62.247 72.222 8.08 0.00 0.00 4.70
1467 2029 4.247380 CCGGGCTCAGATGCTCCC 62.247 72.222 0.00 0.00 35.42 4.30
1469 2031 4.925861 GGGCTCAGATGCTCCCGC 62.926 72.222 0.00 0.00 0.00 6.13
1470 2032 3.859414 GGCTCAGATGCTCCCGCT 61.859 66.667 0.00 0.00 36.97 5.52
1471 2033 2.280052 GCTCAGATGCTCCCGCTC 60.280 66.667 0.00 0.00 36.97 5.03
1472 2034 3.086391 GCTCAGATGCTCCCGCTCA 62.086 63.158 0.00 0.00 36.97 4.26
1473 2035 1.067749 CTCAGATGCTCCCGCTCAG 59.932 63.158 0.00 0.00 36.97 3.35
1474 2036 1.380380 TCAGATGCTCCCGCTCAGA 60.380 57.895 0.00 0.00 36.97 3.27
1475 2037 0.972471 TCAGATGCTCCCGCTCAGAA 60.972 55.000 0.00 0.00 36.97 3.02
1476 2038 0.107993 CAGATGCTCCCGCTCAGAAA 60.108 55.000 0.00 0.00 36.97 2.52
1477 2039 0.615331 AGATGCTCCCGCTCAGAAAA 59.385 50.000 0.00 0.00 36.97 2.29
1478 2040 1.003580 AGATGCTCCCGCTCAGAAAAA 59.996 47.619 0.00 0.00 36.97 1.94
1547 2109 9.767684 TTTTTGTAGTAGATAATTTGATGCGTG 57.232 29.630 0.00 0.00 0.00 5.34
1548 2110 8.710835 TTTGTAGTAGATAATTTGATGCGTGA 57.289 30.769 0.00 0.00 0.00 4.35
1549 2111 7.930513 TGTAGTAGATAATTTGATGCGTGAG 57.069 36.000 0.00 0.00 0.00 3.51
1550 2112 7.489160 TGTAGTAGATAATTTGATGCGTGAGT 58.511 34.615 0.00 0.00 0.00 3.41
1551 2113 7.979537 TGTAGTAGATAATTTGATGCGTGAGTT 59.020 33.333 0.00 0.00 0.00 3.01
1552 2114 7.470289 AGTAGATAATTTGATGCGTGAGTTC 57.530 36.000 0.00 0.00 0.00 3.01
1553 2115 5.741388 AGATAATTTGATGCGTGAGTTCC 57.259 39.130 0.00 0.00 0.00 3.62
1554 2116 2.900122 AATTTGATGCGTGAGTTCCG 57.100 45.000 0.00 0.00 0.00 4.30
1564 2126 3.806316 CGTGAGTTCCGCTGTAAATTT 57.194 42.857 0.00 0.00 0.00 1.82
1565 2127 3.732943 CGTGAGTTCCGCTGTAAATTTC 58.267 45.455 0.00 0.00 0.00 2.17
1566 2128 3.185594 CGTGAGTTCCGCTGTAAATTTCA 59.814 43.478 0.00 0.00 0.00 2.69
1567 2129 4.319190 CGTGAGTTCCGCTGTAAATTTCAA 60.319 41.667 0.00 0.00 0.00 2.69
1568 2130 4.909880 GTGAGTTCCGCTGTAAATTTCAAC 59.090 41.667 0.00 0.00 0.00 3.18
1569 2131 4.819630 TGAGTTCCGCTGTAAATTTCAACT 59.180 37.500 0.00 0.00 0.00 3.16
1570 2132 5.049680 TGAGTTCCGCTGTAAATTTCAACTC 60.050 40.000 0.00 0.00 39.20 3.01
1571 2133 4.819630 AGTTCCGCTGTAAATTTCAACTCA 59.180 37.500 0.00 0.00 0.00 3.41
1572 2134 5.473504 AGTTCCGCTGTAAATTTCAACTCAT 59.526 36.000 0.00 0.00 0.00 2.90
1573 2135 5.957842 TCCGCTGTAAATTTCAACTCATT 57.042 34.783 0.00 0.00 0.00 2.57
1574 2136 6.325919 TCCGCTGTAAATTTCAACTCATTT 57.674 33.333 0.00 0.00 0.00 2.32
1575 2137 6.148948 TCCGCTGTAAATTTCAACTCATTTG 58.851 36.000 0.00 0.00 36.42 2.32
1576 2138 6.016693 TCCGCTGTAAATTTCAACTCATTTGA 60.017 34.615 0.00 0.00 42.83 2.69
1587 2149 6.146601 TCAACTCATTTGAACATTTGAGCA 57.853 33.333 11.64 0.00 41.51 4.26
1588 2150 6.210796 TCAACTCATTTGAACATTTGAGCAG 58.789 36.000 11.64 7.11 41.51 4.24
1589 2151 4.553323 ACTCATTTGAACATTTGAGCAGC 58.447 39.130 11.64 0.00 39.33 5.25
1590 2152 4.280174 ACTCATTTGAACATTTGAGCAGCT 59.720 37.500 0.00 0.00 39.33 4.24
1591 2153 4.801891 TCATTTGAACATTTGAGCAGCTC 58.198 39.130 16.21 16.21 0.00 4.09
1592 2154 4.521639 TCATTTGAACATTTGAGCAGCTCT 59.478 37.500 23.15 1.24 0.00 4.09
1593 2155 4.494350 TTTGAACATTTGAGCAGCTCTC 57.506 40.909 23.15 11.54 42.23 3.20
1594 2156 2.071540 TGAACATTTGAGCAGCTCTCG 58.928 47.619 23.15 10.96 44.86 4.04
1595 2157 1.396301 GAACATTTGAGCAGCTCTCGG 59.604 52.381 23.15 12.17 44.86 4.63
1596 2158 1.023513 ACATTTGAGCAGCTCTCGGC 61.024 55.000 23.15 0.00 44.86 5.54
1597 2159 1.022982 CATTTGAGCAGCTCTCGGCA 61.023 55.000 23.15 0.00 44.86 5.69
1598 2160 0.321919 ATTTGAGCAGCTCTCGGCAA 60.322 50.000 23.15 6.67 44.86 4.52
1599 2161 0.534877 TTTGAGCAGCTCTCGGCAAA 60.535 50.000 23.15 12.39 44.86 3.68
1600 2162 0.534877 TTGAGCAGCTCTCGGCAAAA 60.535 50.000 23.15 4.52 44.86 2.44
1601 2163 0.534877 TGAGCAGCTCTCGGCAAAAA 60.535 50.000 23.15 0.00 44.86 1.94
1623 2185 6.894339 AAAGATAAATCGGGTCAAAACAGT 57.106 33.333 0.00 0.00 0.00 3.55
1624 2186 6.894339 AAGATAAATCGGGTCAAAACAGTT 57.106 33.333 0.00 0.00 0.00 3.16
1625 2187 6.496338 AGATAAATCGGGTCAAAACAGTTC 57.504 37.500 0.00 0.00 0.00 3.01
1626 2188 3.619233 AAATCGGGTCAAAACAGTTCG 57.381 42.857 0.00 0.00 0.00 3.95
1627 2189 2.249844 ATCGGGTCAAAACAGTTCGT 57.750 45.000 0.00 0.00 0.00 3.85
1628 2190 1.292061 TCGGGTCAAAACAGTTCGTG 58.708 50.000 0.00 0.00 0.00 4.35
1629 2191 1.134759 TCGGGTCAAAACAGTTCGTGA 60.135 47.619 0.00 0.00 0.00 4.35
1630 2192 1.666700 CGGGTCAAAACAGTTCGTGAA 59.333 47.619 2.00 0.00 0.00 3.18
1631 2193 2.538132 CGGGTCAAAACAGTTCGTGAAC 60.538 50.000 4.58 4.58 41.45 3.18
1632 2194 2.420722 GGGTCAAAACAGTTCGTGAACA 59.579 45.455 14.61 0.00 43.47 3.18
1633 2195 3.119779 GGGTCAAAACAGTTCGTGAACAA 60.120 43.478 14.61 0.00 43.47 2.83
1634 2196 4.439563 GGGTCAAAACAGTTCGTGAACAAT 60.440 41.667 14.61 0.00 43.47 2.71
1635 2197 5.220892 GGGTCAAAACAGTTCGTGAACAATA 60.221 40.000 14.61 0.00 43.47 1.90
1636 2198 5.679792 GGTCAAAACAGTTCGTGAACAATAC 59.320 40.000 14.61 3.59 43.47 1.89
1637 2199 6.252281 GTCAAAACAGTTCGTGAACAATACA 58.748 36.000 14.61 0.00 43.47 2.29
1638 2200 6.193959 GTCAAAACAGTTCGTGAACAATACAC 59.806 38.462 14.61 0.00 43.47 2.90
1639 2201 6.092944 TCAAAACAGTTCGTGAACAATACACT 59.907 34.615 14.61 0.00 43.47 3.55
1640 2202 6.431198 AAACAGTTCGTGAACAATACACTT 57.569 33.333 14.61 0.00 43.47 3.16
1641 2203 6.431198 AACAGTTCGTGAACAATACACTTT 57.569 33.333 14.61 0.00 43.47 2.66
1642 2204 6.431198 ACAGTTCGTGAACAATACACTTTT 57.569 33.333 14.61 0.00 43.47 2.27
1643 2205 6.848451 ACAGTTCGTGAACAATACACTTTTT 58.152 32.000 14.61 0.00 43.47 1.94
1662 2224 5.441709 TTTTTACAGACCCCGATTTTGTC 57.558 39.130 0.00 0.00 0.00 3.18
1663 2225 4.360951 TTTACAGACCCCGATTTTGTCT 57.639 40.909 0.00 0.00 39.86 3.41
1664 2226 2.951229 ACAGACCCCGATTTTGTCTT 57.049 45.000 0.00 0.00 37.25 3.01
1665 2227 3.223674 ACAGACCCCGATTTTGTCTTT 57.776 42.857 0.00 0.00 37.25 2.52
1666 2228 3.562182 ACAGACCCCGATTTTGTCTTTT 58.438 40.909 0.00 0.00 37.25 2.27
1667 2229 3.958147 ACAGACCCCGATTTTGTCTTTTT 59.042 39.130 0.00 0.00 37.25 1.94
1683 2245 2.183478 TTTTTGCCGAGAGATGCTCA 57.817 45.000 0.00 0.00 44.15 4.26
1684 2246 2.183478 TTTTGCCGAGAGATGCTCAA 57.817 45.000 0.00 0.00 44.15 3.02
1685 2247 2.183478 TTTGCCGAGAGATGCTCAAA 57.817 45.000 0.00 0.00 44.15 2.69
1686 2248 2.408271 TTGCCGAGAGATGCTCAAAT 57.592 45.000 0.00 0.00 44.15 2.32
1687 2249 1.660167 TGCCGAGAGATGCTCAAATG 58.340 50.000 0.00 0.00 44.15 2.32
1688 2250 1.065926 TGCCGAGAGATGCTCAAATGT 60.066 47.619 0.00 0.00 44.15 2.71
1689 2251 1.596727 GCCGAGAGATGCTCAAATGTC 59.403 52.381 0.00 0.00 44.15 3.06
1690 2252 2.208431 CCGAGAGATGCTCAAATGTCC 58.792 52.381 0.00 0.00 44.15 4.02
1691 2253 2.419159 CCGAGAGATGCTCAAATGTCCA 60.419 50.000 0.00 0.00 44.15 4.02
1692 2254 3.264947 CGAGAGATGCTCAAATGTCCAA 58.735 45.455 0.00 0.00 44.15 3.53
1693 2255 3.686241 CGAGAGATGCTCAAATGTCCAAA 59.314 43.478 0.00 0.00 44.15 3.28
1694 2256 4.436584 CGAGAGATGCTCAAATGTCCAAAC 60.437 45.833 0.00 0.00 44.15 2.93
1695 2257 4.401022 AGAGATGCTCAAATGTCCAAACA 58.599 39.130 0.00 0.00 34.61 2.83
1696 2258 4.828939 AGAGATGCTCAAATGTCCAAACAA 59.171 37.500 0.00 0.00 34.11 2.83
1697 2259 5.048224 AGAGATGCTCAAATGTCCAAACAAG 60.048 40.000 0.00 0.00 34.11 3.16
1698 2260 3.731652 TGCTCAAATGTCCAAACAAGG 57.268 42.857 0.00 0.00 39.30 3.61
1699 2261 3.030291 TGCTCAAATGTCCAAACAAGGT 58.970 40.909 0.00 0.00 39.30 3.50
1700 2262 3.181477 TGCTCAAATGTCCAAACAAGGTG 60.181 43.478 0.00 0.00 39.30 4.00
1701 2263 3.068024 GCTCAAATGTCCAAACAAGGTGA 59.932 43.478 0.00 0.00 39.30 4.02
1702 2264 4.441356 GCTCAAATGTCCAAACAAGGTGAA 60.441 41.667 0.00 0.00 39.30 3.18
1703 2265 5.659463 CTCAAATGTCCAAACAAGGTGAAA 58.341 37.500 0.00 0.00 39.30 2.69
1704 2266 6.232581 TCAAATGTCCAAACAAGGTGAAAT 57.767 33.333 0.00 0.00 39.30 2.17
1705 2267 6.648192 TCAAATGTCCAAACAAGGTGAAATT 58.352 32.000 0.00 0.00 39.30 1.82
1706 2268 7.108847 TCAAATGTCCAAACAAGGTGAAATTT 58.891 30.769 0.00 0.00 39.30 1.82
1707 2269 7.609532 TCAAATGTCCAAACAAGGTGAAATTTT 59.390 29.630 0.00 0.00 39.30 1.82
1708 2270 7.552458 AATGTCCAAACAAGGTGAAATTTTC 57.448 32.000 2.05 2.05 39.30 2.29
1709 2271 6.042638 TGTCCAAACAAGGTGAAATTTTCA 57.957 33.333 7.74 7.74 32.45 2.69
1710 2272 6.105333 TGTCCAAACAAGGTGAAATTTTCAG 58.895 36.000 12.02 3.67 34.49 3.02
1711 2273 5.523552 GTCCAAACAAGGTGAAATTTTCAGG 59.476 40.000 12.02 7.58 41.01 3.86
1712 2274 4.815846 CCAAACAAGGTGAAATTTTCAGGG 59.184 41.667 12.02 5.21 41.01 4.45
1713 2275 5.396213 CCAAACAAGGTGAAATTTTCAGGGA 60.396 40.000 12.02 0.00 41.01 4.20
1714 2276 5.948742 AACAAGGTGAAATTTTCAGGGAA 57.051 34.783 12.02 0.00 41.01 3.97
1715 2277 5.276461 ACAAGGTGAAATTTTCAGGGAAC 57.724 39.130 12.02 0.68 41.01 3.62
1732 2294 4.900635 GGAACCTCACGCATCAAATTAT 57.099 40.909 0.00 0.00 0.00 1.28
1733 2295 4.848757 GGAACCTCACGCATCAAATTATC 58.151 43.478 0.00 0.00 0.00 1.75
1734 2296 4.576463 GGAACCTCACGCATCAAATTATCT 59.424 41.667 0.00 0.00 0.00 1.98
1735 2297 5.758296 GGAACCTCACGCATCAAATTATCTA 59.242 40.000 0.00 0.00 0.00 1.98
1736 2298 6.292919 GGAACCTCACGCATCAAATTATCTAC 60.293 42.308 0.00 0.00 0.00 2.59
1737 2299 5.057149 ACCTCACGCATCAAATTATCTACC 58.943 41.667 0.00 0.00 0.00 3.18
1738 2300 5.056480 CCTCACGCATCAAATTATCTACCA 58.944 41.667 0.00 0.00 0.00 3.25
1739 2301 5.050091 CCTCACGCATCAAATTATCTACCAC 60.050 44.000 0.00 0.00 0.00 4.16
1740 2302 5.423886 TCACGCATCAAATTATCTACCACA 58.576 37.500 0.00 0.00 0.00 4.17
1741 2303 5.877564 TCACGCATCAAATTATCTACCACAA 59.122 36.000 0.00 0.00 0.00 3.33
1742 2304 6.372937 TCACGCATCAAATTATCTACCACAAA 59.627 34.615 0.00 0.00 0.00 2.83
1743 2305 7.026562 CACGCATCAAATTATCTACCACAAAA 58.973 34.615 0.00 0.00 0.00 2.44
1744 2306 7.540400 CACGCATCAAATTATCTACCACAAAAA 59.460 33.333 0.00 0.00 0.00 1.94
1819 2381 4.082523 GTGCAGCTGAGCCCGGTA 62.083 66.667 20.43 0.00 0.00 4.02
1820 2382 3.774528 TGCAGCTGAGCCCGGTAG 61.775 66.667 20.43 0.00 0.00 3.18
1822 2384 3.774528 CAGCTGAGCCCGGTAGCA 61.775 66.667 8.42 4.10 39.84 3.49
1823 2385 3.003173 AGCTGAGCCCGGTAGCAA 61.003 61.111 16.29 0.36 39.84 3.91
1824 2386 2.190578 GCTGAGCCCGGTAGCAAT 59.809 61.111 0.00 0.00 37.40 3.56
1825 2387 1.452108 GCTGAGCCCGGTAGCAATT 60.452 57.895 0.00 0.00 37.40 2.32
1826 2388 0.179056 GCTGAGCCCGGTAGCAATTA 60.179 55.000 0.00 0.00 37.40 1.40
2064 3652 5.335191 GGAAGTATGTCTGCAAAGGTTGAAG 60.335 44.000 0.00 0.00 37.69 3.02
2077 3665 4.086706 AGGTTGAAGTACTGTTCCCAAG 57.913 45.455 0.00 0.00 0.00 3.61
2187 3789 2.361757 TGGCTTTCTTGTGGTGTTGATG 59.638 45.455 0.00 0.00 0.00 3.07
2207 3810 1.737793 GGTGTATGGTTTCTTCGCAGG 59.262 52.381 0.00 0.00 0.00 4.85
2248 3860 5.885912 AGAGAAGAGAGATCACTTGGAGTAC 59.114 44.000 0.00 0.00 0.00 2.73
2321 3974 4.633126 TGAGTTGCAAGATCAGTAATCAGC 59.367 41.667 0.00 0.00 36.79 4.26
2407 4063 8.598075 AGTACTTGTATTTTCCGCTTATTTACG 58.402 33.333 0.00 0.00 0.00 3.18
2414 4070 1.748493 TCCGCTTATTTACGTACGGGT 59.252 47.619 21.06 1.34 40.95 5.28
2420 4076 5.498542 CGCTTATTTACGTACGGGTTGTTAC 60.499 44.000 21.06 2.45 0.00 2.50
2487 4150 3.888930 CCTGGCACTTTCAGTTCCTTTTA 59.111 43.478 0.00 0.00 32.48 1.52
2505 4168 8.940768 TCCTTTTATGTTAAAATTATGCCAGC 57.059 30.769 0.00 0.00 0.00 4.85
2546 4209 2.637872 CCCAGGAGAGGTTACTTGTTGA 59.362 50.000 0.00 0.00 0.00 3.18
2551 4214 4.065789 GGAGAGGTTACTTGTTGACTTGG 58.934 47.826 0.00 0.00 0.00 3.61
2582 4252 1.240256 GTCTGTCCGTGAGTCTCTGT 58.760 55.000 0.65 0.00 0.00 3.41
2590 4260 3.440522 TCCGTGAGTCTCTGTATGACTTG 59.559 47.826 0.65 0.00 43.88 3.16
2591 4261 3.191581 CCGTGAGTCTCTGTATGACTTGT 59.808 47.826 0.65 0.00 43.88 3.16
2617 4287 7.710044 TGTATAACTTGGTAACTCAACGTTTGA 59.290 33.333 0.00 0.00 37.05 2.69
2618 4288 4.870221 ACTTGGTAACTCAACGTTTGAC 57.130 40.909 0.00 0.00 37.05 3.18
2683 4354 5.852827 TCATCGTATACATCTGAATTGCCA 58.147 37.500 3.32 0.00 0.00 4.92
2730 4401 2.354203 GGTTCTGCAGTGAGGTTAGGAG 60.354 54.545 14.67 0.00 0.00 3.69
2805 4476 1.601419 TAACTTGGAGACTCGCCGGG 61.601 60.000 2.18 0.00 0.00 5.73
2817 4488 2.674754 GCCGGGATCCACAGGAAA 59.325 61.111 20.31 0.00 34.34 3.13
2858 4529 3.629855 TCGTTTGTTTCAAGATTGGCTGA 59.370 39.130 0.00 0.00 0.00 4.26
2873 4544 3.873910 TGGCTGACAAAGAATAGGTAGC 58.126 45.455 0.00 0.00 0.00 3.58
2875 4546 4.019321 TGGCTGACAAAGAATAGGTAGCTT 60.019 41.667 0.00 0.00 0.00 3.74
2876 4547 4.572795 GGCTGACAAAGAATAGGTAGCTTC 59.427 45.833 0.00 0.00 0.00 3.86
2877 4548 5.423886 GCTGACAAAGAATAGGTAGCTTCT 58.576 41.667 0.00 0.00 33.19 2.85
2878 4549 5.522097 GCTGACAAAGAATAGGTAGCTTCTC 59.478 44.000 0.00 0.00 31.45 2.87
2879 4550 6.629291 GCTGACAAAGAATAGGTAGCTTCTCT 60.629 42.308 0.00 0.00 31.45 3.10
2880 4551 6.868622 TGACAAAGAATAGGTAGCTTCTCTC 58.131 40.000 0.00 0.00 31.45 3.20
2881 4552 6.665680 TGACAAAGAATAGGTAGCTTCTCTCT 59.334 38.462 0.00 0.00 31.45 3.10
2883 4554 7.912719 ACAAAGAATAGGTAGCTTCTCTCTTT 58.087 34.615 0.00 7.02 31.93 2.52
2885 4556 8.878769 CAAAGAATAGGTAGCTTCTCTCTTTTC 58.121 37.037 0.00 6.91 30.61 2.29
2886 4557 7.971368 AGAATAGGTAGCTTCTCTCTTTTCT 57.029 36.000 0.00 0.00 0.00 2.52
2887 4558 8.007405 AGAATAGGTAGCTTCTCTCTTTTCTC 57.993 38.462 0.00 0.00 0.00 2.87
2888 4559 7.617723 AGAATAGGTAGCTTCTCTCTTTTCTCA 59.382 37.037 0.00 0.00 0.00 3.27
2889 4560 5.400066 AGGTAGCTTCTCTCTTTTCTCAC 57.600 43.478 0.00 0.00 0.00 3.51
2925 4596 4.274602 TGAAACCGTAGCAGGAATTGTA 57.725 40.909 0.00 0.00 34.73 2.41
2937 4608 2.094675 GGAATTGTAGCACCACTGCAT 58.905 47.619 0.00 0.00 46.97 3.96
2940 4611 4.261322 GGAATTGTAGCACCACTGCATATG 60.261 45.833 0.00 0.00 46.97 1.78
2941 4612 3.625649 TTGTAGCACCACTGCATATGA 57.374 42.857 6.97 0.00 46.97 2.15
2942 4613 2.905075 TGTAGCACCACTGCATATGAC 58.095 47.619 6.97 0.00 46.97 3.06
2943 4614 1.860950 GTAGCACCACTGCATATGACG 59.139 52.381 6.97 0.00 46.97 4.35
2944 4615 0.462581 AGCACCACTGCATATGACGG 60.463 55.000 6.97 5.70 46.97 4.79
2945 4616 0.461870 GCACCACTGCATATGACGGA 60.462 55.000 6.97 0.00 43.62 4.69
2946 4617 1.575244 CACCACTGCATATGACGGAG 58.425 55.000 6.97 2.05 0.00 4.63
2947 4618 4.935736 GCACCACTGCATATGACGGAGT 62.936 54.545 6.97 0.00 44.56 3.85
2948 4619 5.596934 GCACCACTGCATATGACGGAGTA 62.597 52.174 6.97 0.00 42.57 2.59
2964 4635 6.830873 ACGGAGTACTATTTTGACTGTACT 57.169 37.500 0.00 0.00 45.39 2.73
2965 4636 7.928307 ACGGAGTACTATTTTGACTGTACTA 57.072 36.000 0.00 0.00 43.57 1.82
2966 4637 7.756558 ACGGAGTACTATTTTGACTGTACTAC 58.243 38.462 0.00 0.00 43.57 2.73
2967 4638 7.391554 ACGGAGTACTATTTTGACTGTACTACA 59.608 37.037 12.82 0.00 43.38 2.74
2968 4639 8.404000 CGGAGTACTATTTTGACTGTACTACAT 58.596 37.037 12.82 0.00 43.38 2.29
2994 4665 4.535526 TTTTATCAAAGAAGGGCTTGCC 57.464 40.909 2.49 2.49 36.80 4.52
2995 4666 2.143876 TATCAAAGAAGGGCTTGCCC 57.856 50.000 22.29 22.29 36.80 5.36
3004 4675 2.043953 GGCTTGCCCCTTCCGATT 60.044 61.111 0.00 0.00 0.00 3.34
3005 4676 1.682344 GGCTTGCCCCTTCCGATTT 60.682 57.895 0.00 0.00 0.00 2.17
3006 4677 1.257750 GGCTTGCCCCTTCCGATTTT 61.258 55.000 0.00 0.00 0.00 1.82
3007 4678 0.173481 GCTTGCCCCTTCCGATTTTC 59.827 55.000 0.00 0.00 0.00 2.29
3008 4679 1.544724 CTTGCCCCTTCCGATTTTCA 58.455 50.000 0.00 0.00 0.00 2.69
3009 4680 2.102578 CTTGCCCCTTCCGATTTTCAT 58.897 47.619 0.00 0.00 0.00 2.57
3010 4681 2.230130 TGCCCCTTCCGATTTTCATT 57.770 45.000 0.00 0.00 0.00 2.57
3011 4682 3.374042 TGCCCCTTCCGATTTTCATTA 57.626 42.857 0.00 0.00 0.00 1.90
3012 4683 3.020984 TGCCCCTTCCGATTTTCATTAC 58.979 45.455 0.00 0.00 0.00 1.89
3013 4684 3.288092 GCCCCTTCCGATTTTCATTACT 58.712 45.455 0.00 0.00 0.00 2.24
3014 4685 3.066760 GCCCCTTCCGATTTTCATTACTG 59.933 47.826 0.00 0.00 0.00 2.74
3015 4686 4.523083 CCCCTTCCGATTTTCATTACTGA 58.477 43.478 0.00 0.00 0.00 3.41
3016 4687 4.947388 CCCCTTCCGATTTTCATTACTGAA 59.053 41.667 0.00 0.00 39.62 3.02
3017 4688 5.417580 CCCCTTCCGATTTTCATTACTGAAA 59.582 40.000 4.26 4.26 46.92 2.69
3028 4699 7.639113 TTTCATTACTGAAAACCACTGAGTT 57.361 32.000 5.83 0.00 45.91 3.01
3029 4700 6.861065 TCATTACTGAAAACCACTGAGTTC 57.139 37.500 0.00 0.00 0.00 3.01
3030 4701 6.591935 TCATTACTGAAAACCACTGAGTTCT 58.408 36.000 0.00 0.00 0.00 3.01
3031 4702 7.732025 TCATTACTGAAAACCACTGAGTTCTA 58.268 34.615 0.00 0.00 0.00 2.10
3032 4703 7.656137 TCATTACTGAAAACCACTGAGTTCTAC 59.344 37.037 0.00 0.00 0.00 2.59
3033 4704 5.353394 ACTGAAAACCACTGAGTTCTACA 57.647 39.130 0.00 0.00 0.00 2.74
3034 4705 5.360591 ACTGAAAACCACTGAGTTCTACAG 58.639 41.667 0.00 0.00 40.68 2.74
3035 4706 5.128827 ACTGAAAACCACTGAGTTCTACAGA 59.871 40.000 0.00 0.00 38.55 3.41
3036 4707 5.357257 TGAAAACCACTGAGTTCTACAGAC 58.643 41.667 0.00 0.00 38.55 3.51
3037 4708 3.644884 AACCACTGAGTTCTACAGACG 57.355 47.619 0.00 0.00 38.55 4.18
3038 4709 2.860009 ACCACTGAGTTCTACAGACGA 58.140 47.619 0.00 0.00 38.55 4.20
3039 4710 2.814919 ACCACTGAGTTCTACAGACGAG 59.185 50.000 0.00 0.00 38.55 4.18
3040 4711 2.814919 CCACTGAGTTCTACAGACGAGT 59.185 50.000 0.00 0.00 38.55 4.18
3041 4712 3.253677 CCACTGAGTTCTACAGACGAGTT 59.746 47.826 0.00 0.00 38.55 3.01
3042 4713 4.261656 CCACTGAGTTCTACAGACGAGTTT 60.262 45.833 0.00 0.00 38.55 2.66
3043 4714 5.048921 CCACTGAGTTCTACAGACGAGTTTA 60.049 44.000 0.00 0.00 38.55 2.01
3044 4715 6.436261 CACTGAGTTCTACAGACGAGTTTAA 58.564 40.000 0.00 0.00 38.55 1.52
3045 4716 6.916387 CACTGAGTTCTACAGACGAGTTTAAA 59.084 38.462 0.00 0.00 38.55 1.52
3046 4717 6.916932 ACTGAGTTCTACAGACGAGTTTAAAC 59.083 38.462 10.47 10.47 38.55 2.01
3047 4718 6.211515 TGAGTTCTACAGACGAGTTTAAACC 58.788 40.000 14.72 5.83 0.00 3.27
3048 4719 5.218139 AGTTCTACAGACGAGTTTAAACCG 58.782 41.667 20.49 20.49 0.00 4.44
3049 4720 4.164822 TCTACAGACGAGTTTAAACCGG 57.835 45.455 23.70 15.62 0.00 5.28
3050 4721 3.820467 TCTACAGACGAGTTTAAACCGGA 59.180 43.478 23.70 12.96 0.00 5.14
3051 4722 3.457610 ACAGACGAGTTTAAACCGGAA 57.542 42.857 23.70 0.00 0.00 4.30
3052 4723 3.126073 ACAGACGAGTTTAAACCGGAAC 58.874 45.455 23.70 1.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.607939 TGTCAGTTCTGTTAGTTCCTTCA 57.392 39.130 0.00 0.00 0.00 3.02
4 5 6.861065 TTGAATGTCAGTTCTGTTAGTTCC 57.139 37.500 0.00 0.00 0.00 3.62
12 13 5.696822 CAGTCCATTTGAATGTCAGTTCTG 58.303 41.667 3.30 0.00 34.41 3.02
13 14 5.954296 CAGTCCATTTGAATGTCAGTTCT 57.046 39.130 3.30 0.00 34.41 3.01
25 26 0.881118 CCGGTCCAACAGTCCATTTG 59.119 55.000 0.00 0.00 0.00 2.32
27 28 0.991920 ATCCGGTCCAACAGTCCATT 59.008 50.000 0.00 0.00 0.00 3.16
34 35 1.070445 ACAACGTTATCCGGTCCAACA 59.930 47.619 0.00 0.00 42.24 3.33
42 43 2.030457 GGCTCATCAACAACGTTATCCG 59.970 50.000 0.00 0.00 44.03 4.18
47 48 2.076863 GCTAGGCTCATCAACAACGTT 58.923 47.619 0.00 0.00 0.00 3.99
49 50 1.662629 CTGCTAGGCTCATCAACAACG 59.337 52.381 0.00 0.00 0.00 4.10
50 51 2.675348 GACTGCTAGGCTCATCAACAAC 59.325 50.000 0.00 0.00 0.00 3.32
53 54 2.548875 CTGACTGCTAGGCTCATCAAC 58.451 52.381 0.00 0.00 0.00 3.18
54 55 1.483827 CCTGACTGCTAGGCTCATCAA 59.516 52.381 0.00 0.00 0.00 2.57
56 57 1.407936 TCCTGACTGCTAGGCTCATC 58.592 55.000 0.00 0.00 35.23 2.92
57 58 1.693062 CATCCTGACTGCTAGGCTCAT 59.307 52.381 0.00 0.00 35.23 2.90
58 59 1.117994 CATCCTGACTGCTAGGCTCA 58.882 55.000 0.00 0.00 35.23 4.26
61 62 1.877258 GCATCATCCTGACTGCTAGGC 60.877 57.143 0.00 0.00 35.23 3.93
62 63 1.415289 TGCATCATCCTGACTGCTAGG 59.585 52.381 0.00 0.00 34.39 3.02
67 68 4.092771 CACTTTTGCATCATCCTGACTG 57.907 45.455 0.00 0.00 0.00 3.51
149 153 2.270874 ATCCATGTCGGGAAGGTGGC 62.271 60.000 0.00 0.00 41.12 5.01
184 188 4.878397 CCAAAAAGATGGATCTCTACGCTT 59.122 41.667 0.00 0.00 43.54 4.68
186 190 4.192317 ACCAAAAAGATGGATCTCTACGC 58.808 43.478 0.00 0.00 43.54 4.42
187 191 5.643777 ACAACCAAAAAGATGGATCTCTACG 59.356 40.000 0.00 0.00 43.54 3.51
190 194 7.020827 TCTACAACCAAAAAGATGGATCTCT 57.979 36.000 0.00 0.00 43.54 3.10
236 240 2.026262 AGGTTTCATTATCACGGCCACT 60.026 45.455 2.24 0.00 0.00 4.00
251 255 4.368315 AGTTTTGGAAATGCGAAGGTTTC 58.632 39.130 0.00 0.00 34.42 2.78
277 281 1.970917 GAGCATGCAACGTAAGCGCT 61.971 55.000 21.98 2.64 42.83 5.92
279 283 0.443869 AAGAGCATGCAACGTAAGCG 59.556 50.000 21.98 0.00 45.62 4.68
334 338 3.501062 ACATCTGTTCTGTGTGCATCTTG 59.499 43.478 0.00 0.00 0.00 3.02
335 339 3.748083 ACATCTGTTCTGTGTGCATCTT 58.252 40.909 0.00 0.00 0.00 2.40
345 349 3.672808 AGCTGAGGAAACATCTGTTCTG 58.327 45.455 0.00 0.00 37.25 3.02
350 354 3.935315 TCTCAAGCTGAGGAAACATCTG 58.065 45.455 11.63 0.00 44.39 2.90
464 474 6.347725 GGTGATTTAGCTGTAGTTGTCAACTG 60.348 42.308 25.41 11.93 42.84 3.16
506 519 0.608640 ACCTCACGTCCTTCCATGTC 59.391 55.000 0.00 0.00 0.00 3.06
636 649 1.760613 TCTTGACGTTCACCACTTCCT 59.239 47.619 0.00 0.00 0.00 3.36
691 721 4.521256 AGCTGACTCGAAGTCTCTTAACTT 59.479 41.667 13.65 0.00 45.27 2.66
692 722 4.076394 AGCTGACTCGAAGTCTCTTAACT 58.924 43.478 13.65 3.22 45.27 2.24
705 735 6.120378 TCTGTTATACTTACAGCTGACTCG 57.880 41.667 23.35 8.06 42.12 4.18
713 743 5.289675 GCACACAGCTCTGTTATACTTACAG 59.710 44.000 0.00 0.00 42.83 2.74
834 864 1.699656 CGCACTGCCGAATCAGAAGG 61.700 60.000 0.00 0.00 37.51 3.46
921 954 2.011222 GTCAGAGACTCTAGACGTGGG 58.989 57.143 4.22 0.00 0.00 4.61
948 981 3.119137 GCTCAACCAAGTTTCCACAACTT 60.119 43.478 0.00 0.00 40.80 2.66
1182 1266 1.228552 AGATGCCAACCCACCACAC 60.229 57.895 0.00 0.00 0.00 3.82
1312 1874 1.660560 GGGCAGTCGCTGATGCAAAT 61.661 55.000 10.46 0.00 44.37 2.32
1431 1993 0.179189 GGCTCAGACGCGGATTTTTG 60.179 55.000 12.47 0.00 0.00 2.44
1434 1996 2.125106 GGGCTCAGACGCGGATTT 60.125 61.111 12.47 0.00 0.00 2.17
1435 1997 4.514577 CGGGCTCAGACGCGGATT 62.515 66.667 12.47 0.00 41.75 3.01
1448 2010 4.925861 GAGCATCTGAGCCCGGGC 62.926 72.222 39.29 39.29 42.33 6.13
1449 2011 4.247380 GGAGCATCTGAGCCCGGG 62.247 72.222 19.09 19.09 33.73 5.73
1450 2012 4.247380 GGGAGCATCTGAGCCCGG 62.247 72.222 0.00 0.00 33.73 5.73
1521 2083 9.767684 CACGCATCAAATTATCTACTACAAAAA 57.232 29.630 0.00 0.00 0.00 1.94
1522 2084 9.157104 TCACGCATCAAATTATCTACTACAAAA 57.843 29.630 0.00 0.00 0.00 2.44
1523 2085 8.710835 TCACGCATCAAATTATCTACTACAAA 57.289 30.769 0.00 0.00 0.00 2.83
1524 2086 7.979537 ACTCACGCATCAAATTATCTACTACAA 59.020 33.333 0.00 0.00 0.00 2.41
1525 2087 7.489160 ACTCACGCATCAAATTATCTACTACA 58.511 34.615 0.00 0.00 0.00 2.74
1526 2088 7.932120 ACTCACGCATCAAATTATCTACTAC 57.068 36.000 0.00 0.00 0.00 2.73
1527 2089 7.652105 GGAACTCACGCATCAAATTATCTACTA 59.348 37.037 0.00 0.00 0.00 1.82
1528 2090 6.480320 GGAACTCACGCATCAAATTATCTACT 59.520 38.462 0.00 0.00 0.00 2.57
1529 2091 6.562270 CGGAACTCACGCATCAAATTATCTAC 60.562 42.308 0.00 0.00 0.00 2.59
1530 2092 5.462068 CGGAACTCACGCATCAAATTATCTA 59.538 40.000 0.00 0.00 0.00 1.98
1531 2093 4.271049 CGGAACTCACGCATCAAATTATCT 59.729 41.667 0.00 0.00 0.00 1.98
1532 2094 4.518217 CGGAACTCACGCATCAAATTATC 58.482 43.478 0.00 0.00 0.00 1.75
1533 2095 4.536364 CGGAACTCACGCATCAAATTAT 57.464 40.909 0.00 0.00 0.00 1.28
1535 2097 2.900122 CGGAACTCACGCATCAAATT 57.100 45.000 0.00 0.00 0.00 1.82
1544 2106 3.185594 TGAAATTTACAGCGGAACTCACG 59.814 43.478 0.00 0.00 0.00 4.35
1545 2107 4.742438 TGAAATTTACAGCGGAACTCAC 57.258 40.909 0.00 0.00 0.00 3.51
1546 2108 4.819630 AGTTGAAATTTACAGCGGAACTCA 59.180 37.500 0.00 0.00 0.00 3.41
1547 2109 5.049680 TGAGTTGAAATTTACAGCGGAACTC 60.050 40.000 0.00 0.00 38.90 3.01
1548 2110 4.819630 TGAGTTGAAATTTACAGCGGAACT 59.180 37.500 0.00 0.00 0.00 3.01
1549 2111 5.103290 TGAGTTGAAATTTACAGCGGAAC 57.897 39.130 0.00 0.00 0.00 3.62
1550 2112 5.957842 ATGAGTTGAAATTTACAGCGGAA 57.042 34.783 0.00 0.00 0.00 4.30
1551 2113 5.957842 AATGAGTTGAAATTTACAGCGGA 57.042 34.783 0.00 0.00 0.00 5.54
1552 2114 6.148948 TCAAATGAGTTGAAATTTACAGCGG 58.851 36.000 0.00 0.00 43.43 5.52
1564 2126 6.146601 TGCTCAAATGTTCAAATGAGTTGA 57.853 33.333 14.78 0.00 44.74 3.18
1565 2127 5.107607 GCTGCTCAAATGTTCAAATGAGTTG 60.108 40.000 14.78 0.00 41.03 3.16
1566 2128 4.986659 GCTGCTCAAATGTTCAAATGAGTT 59.013 37.500 14.78 0.00 41.03 3.01
1567 2129 4.280174 AGCTGCTCAAATGTTCAAATGAGT 59.720 37.500 0.00 0.06 41.03 3.41
1568 2130 4.806330 AGCTGCTCAAATGTTCAAATGAG 58.194 39.130 0.00 11.32 41.69 2.90
1569 2131 4.521639 AGAGCTGCTCAAATGTTCAAATGA 59.478 37.500 29.49 0.00 32.06 2.57
1570 2132 4.806330 AGAGCTGCTCAAATGTTCAAATG 58.194 39.130 29.49 0.00 32.06 2.32
1571 2133 4.379186 CGAGAGCTGCTCAAATGTTCAAAT 60.379 41.667 29.49 5.90 44.15 2.32
1572 2134 3.058708 CGAGAGCTGCTCAAATGTTCAAA 60.059 43.478 29.49 0.00 44.15 2.69
1573 2135 2.481568 CGAGAGCTGCTCAAATGTTCAA 59.518 45.455 29.49 0.00 44.15 2.69
1574 2136 2.071540 CGAGAGCTGCTCAAATGTTCA 58.928 47.619 29.49 0.00 44.15 3.18
1575 2137 1.396301 CCGAGAGCTGCTCAAATGTTC 59.604 52.381 29.49 16.52 44.15 3.18
1576 2138 1.446907 CCGAGAGCTGCTCAAATGTT 58.553 50.000 29.49 9.44 44.15 2.71
1577 2139 1.023513 GCCGAGAGCTGCTCAAATGT 61.024 55.000 29.49 10.20 44.15 2.71
1578 2140 1.022982 TGCCGAGAGCTGCTCAAATG 61.023 55.000 29.49 16.14 44.15 2.32
1579 2141 0.321919 TTGCCGAGAGCTGCTCAAAT 60.322 50.000 29.49 10.97 44.15 2.32
1580 2142 0.534877 TTTGCCGAGAGCTGCTCAAA 60.535 50.000 29.49 18.50 44.15 2.69
1581 2143 0.534877 TTTTGCCGAGAGCTGCTCAA 60.535 50.000 29.49 13.78 44.15 3.02
1582 2144 0.534877 TTTTTGCCGAGAGCTGCTCA 60.535 50.000 29.49 8.15 44.15 4.26
1583 2145 2.247790 TTTTTGCCGAGAGCTGCTC 58.752 52.632 21.72 21.72 44.23 4.26
1584 2146 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
1598 2160 7.722363 ACTGTTTTGACCCGATTTATCTTTTT 58.278 30.769 0.00 0.00 0.00 1.94
1599 2161 7.284919 ACTGTTTTGACCCGATTTATCTTTT 57.715 32.000 0.00 0.00 0.00 2.27
1600 2162 6.894339 ACTGTTTTGACCCGATTTATCTTT 57.106 33.333 0.00 0.00 0.00 2.52
1601 2163 6.348213 CGAACTGTTTTGACCCGATTTATCTT 60.348 38.462 0.00 0.00 0.00 2.40
1602 2164 5.121768 CGAACTGTTTTGACCCGATTTATCT 59.878 40.000 0.00 0.00 0.00 1.98
1603 2165 5.106830 ACGAACTGTTTTGACCCGATTTATC 60.107 40.000 0.00 0.00 0.00 1.75
1604 2166 4.758165 ACGAACTGTTTTGACCCGATTTAT 59.242 37.500 0.00 0.00 0.00 1.40
1605 2167 4.024725 CACGAACTGTTTTGACCCGATTTA 60.025 41.667 0.00 0.00 0.00 1.40
1606 2168 2.946990 ACGAACTGTTTTGACCCGATTT 59.053 40.909 0.00 0.00 0.00 2.17
1607 2169 2.289547 CACGAACTGTTTTGACCCGATT 59.710 45.455 0.00 0.00 0.00 3.34
1608 2170 1.871039 CACGAACTGTTTTGACCCGAT 59.129 47.619 0.00 0.00 0.00 4.18
1609 2171 1.134759 TCACGAACTGTTTTGACCCGA 60.135 47.619 0.00 0.00 0.00 5.14
1610 2172 1.292061 TCACGAACTGTTTTGACCCG 58.708 50.000 0.00 0.00 0.00 5.28
1611 2173 2.420722 TGTTCACGAACTGTTTTGACCC 59.579 45.455 11.01 2.06 41.67 4.46
1612 2174 3.750639 TGTTCACGAACTGTTTTGACC 57.249 42.857 11.01 1.02 41.67 4.02
1613 2175 6.193959 GTGTATTGTTCACGAACTGTTTTGAC 59.806 38.462 11.01 1.67 41.67 3.18
1614 2176 6.092944 AGTGTATTGTTCACGAACTGTTTTGA 59.907 34.615 11.01 0.00 41.67 2.69
1615 2177 6.255215 AGTGTATTGTTCACGAACTGTTTTG 58.745 36.000 11.01 0.00 41.67 2.44
1616 2178 6.431198 AGTGTATTGTTCACGAACTGTTTT 57.569 33.333 11.01 0.00 41.67 2.43
1617 2179 6.431198 AAGTGTATTGTTCACGAACTGTTT 57.569 33.333 11.01 0.00 41.67 2.83
1618 2180 6.431198 AAAGTGTATTGTTCACGAACTGTT 57.569 33.333 11.01 0.00 41.67 3.16
1619 2181 6.431198 AAAAGTGTATTGTTCACGAACTGT 57.569 33.333 11.01 2.92 41.67 3.55
1640 2202 5.134661 AGACAAAATCGGGGTCTGTAAAAA 58.865 37.500 0.00 0.00 40.21 1.94
1641 2203 4.721132 AGACAAAATCGGGGTCTGTAAAA 58.279 39.130 0.00 0.00 40.21 1.52
1642 2204 4.360951 AGACAAAATCGGGGTCTGTAAA 57.639 40.909 0.00 0.00 40.21 2.01
1643 2205 4.360951 AAGACAAAATCGGGGTCTGTAA 57.639 40.909 0.00 0.00 40.80 2.41
1644 2206 4.360951 AAAGACAAAATCGGGGTCTGTA 57.639 40.909 0.00 0.00 40.80 2.74
1645 2207 2.951229 AAGACAAAATCGGGGTCTGT 57.049 45.000 0.00 0.00 40.80 3.41
1646 2208 4.584327 AAAAAGACAAAATCGGGGTCTG 57.416 40.909 0.00 0.00 40.80 3.51
1664 2226 2.183478 TGAGCATCTCTCGGCAAAAA 57.817 45.000 0.00 0.00 44.86 1.94
1665 2227 2.183478 TTGAGCATCTCTCGGCAAAA 57.817 45.000 0.00 0.00 44.86 2.44
1666 2228 2.183478 TTTGAGCATCTCTCGGCAAA 57.817 45.000 0.00 0.00 44.86 3.68
1667 2229 2.011947 CATTTGAGCATCTCTCGGCAA 58.988 47.619 0.00 0.00 44.86 4.52
1668 2230 1.065926 ACATTTGAGCATCTCTCGGCA 60.066 47.619 0.00 0.00 44.86 5.69
1669 2231 1.596727 GACATTTGAGCATCTCTCGGC 59.403 52.381 0.00 0.00 44.86 5.54
1670 2232 2.208431 GGACATTTGAGCATCTCTCGG 58.792 52.381 0.00 0.00 44.86 4.63
1671 2233 2.897436 TGGACATTTGAGCATCTCTCG 58.103 47.619 0.00 0.00 44.86 4.04
1672 2234 4.456911 TGTTTGGACATTTGAGCATCTCTC 59.543 41.667 0.00 0.00 42.23 3.20
1673 2235 4.401022 TGTTTGGACATTTGAGCATCTCT 58.599 39.130 0.00 0.00 34.92 3.10
1674 2236 4.771590 TGTTTGGACATTTGAGCATCTC 57.228 40.909 0.00 0.00 34.92 2.75
1675 2237 4.021719 CCTTGTTTGGACATTTGAGCATCT 60.022 41.667 0.00 0.00 35.29 2.90
1676 2238 4.240096 CCTTGTTTGGACATTTGAGCATC 58.760 43.478 0.00 0.00 35.29 3.91
1677 2239 3.642848 ACCTTGTTTGGACATTTGAGCAT 59.357 39.130 0.00 0.00 35.29 3.79
1678 2240 3.030291 ACCTTGTTTGGACATTTGAGCA 58.970 40.909 0.00 0.00 35.29 4.26
1679 2241 3.068024 TCACCTTGTTTGGACATTTGAGC 59.932 43.478 0.00 0.00 35.29 4.26
1680 2242 4.916983 TCACCTTGTTTGGACATTTGAG 57.083 40.909 0.00 0.00 35.29 3.02
1681 2243 5.667539 TTTCACCTTGTTTGGACATTTGA 57.332 34.783 0.00 0.00 35.29 2.69
1682 2244 6.923928 AATTTCACCTTGTTTGGACATTTG 57.076 33.333 0.00 0.00 35.29 2.32
1683 2245 7.609532 TGAAAATTTCACCTTGTTTGGACATTT 59.390 29.630 4.03 0.00 33.14 2.32
1684 2246 7.108847 TGAAAATTTCACCTTGTTTGGACATT 58.891 30.769 4.03 0.00 33.14 2.71
1685 2247 6.648192 TGAAAATTTCACCTTGTTTGGACAT 58.352 32.000 4.03 0.00 33.14 3.06
1686 2248 6.042638 TGAAAATTTCACCTTGTTTGGACA 57.957 33.333 4.03 0.00 34.08 4.02
1687 2249 5.523552 CCTGAAAATTTCACCTTGTTTGGAC 59.476 40.000 4.03 0.00 35.46 4.02
1688 2250 5.396213 CCCTGAAAATTTCACCTTGTTTGGA 60.396 40.000 4.03 0.00 35.46 3.53
1689 2251 4.815846 CCCTGAAAATTTCACCTTGTTTGG 59.184 41.667 4.03 2.22 35.46 3.28
1690 2252 5.669477 TCCCTGAAAATTTCACCTTGTTTG 58.331 37.500 4.03 0.00 35.46 2.93
1691 2253 5.948742 TCCCTGAAAATTTCACCTTGTTT 57.051 34.783 4.03 0.00 35.46 2.83
1692 2254 5.396324 GGTTCCCTGAAAATTTCACCTTGTT 60.396 40.000 4.03 0.00 35.46 2.83
1693 2255 4.100963 GGTTCCCTGAAAATTTCACCTTGT 59.899 41.667 4.03 0.00 35.46 3.16
1694 2256 4.344968 AGGTTCCCTGAAAATTTCACCTTG 59.655 41.667 4.03 0.00 35.46 3.61
1695 2257 4.556697 AGGTTCCCTGAAAATTTCACCTT 58.443 39.130 4.03 0.00 35.46 3.50
1696 2258 4.152647 GAGGTTCCCTGAAAATTTCACCT 58.847 43.478 12.73 12.73 34.84 4.00
1697 2259 3.895041 TGAGGTTCCCTGAAAATTTCACC 59.105 43.478 4.03 4.40 35.46 4.02
1698 2260 4.556699 CGTGAGGTTCCCTGAAAATTTCAC 60.557 45.833 4.03 0.00 35.46 3.18
1699 2261 3.568007 CGTGAGGTTCCCTGAAAATTTCA 59.432 43.478 8.25 8.25 38.17 2.69
1700 2262 3.611766 GCGTGAGGTTCCCTGAAAATTTC 60.612 47.826 0.00 0.00 31.76 2.17
1701 2263 2.296190 GCGTGAGGTTCCCTGAAAATTT 59.704 45.455 0.00 0.00 31.76 1.82
1702 2264 1.886542 GCGTGAGGTTCCCTGAAAATT 59.113 47.619 0.00 0.00 31.76 1.82
1703 2265 1.202879 TGCGTGAGGTTCCCTGAAAAT 60.203 47.619 0.00 0.00 31.76 1.82
1704 2266 0.181587 TGCGTGAGGTTCCCTGAAAA 59.818 50.000 0.00 0.00 31.76 2.29
1705 2267 0.400213 ATGCGTGAGGTTCCCTGAAA 59.600 50.000 0.00 0.00 31.76 2.69
1706 2268 0.036388 GATGCGTGAGGTTCCCTGAA 60.036 55.000 0.00 0.00 31.76 3.02
1707 2269 1.191489 TGATGCGTGAGGTTCCCTGA 61.191 55.000 0.00 0.00 31.76 3.86
1708 2270 0.321564 TTGATGCGTGAGGTTCCCTG 60.322 55.000 0.00 0.00 31.76 4.45
1709 2271 0.400213 TTTGATGCGTGAGGTTCCCT 59.600 50.000 0.00 0.00 36.03 4.20
1710 2272 1.463674 ATTTGATGCGTGAGGTTCCC 58.536 50.000 0.00 0.00 0.00 3.97
1711 2273 4.576463 AGATAATTTGATGCGTGAGGTTCC 59.424 41.667 0.00 0.00 0.00 3.62
1712 2274 5.741388 AGATAATTTGATGCGTGAGGTTC 57.259 39.130 0.00 0.00 0.00 3.62
1713 2275 5.527582 GGTAGATAATTTGATGCGTGAGGTT 59.472 40.000 0.00 0.00 0.00 3.50
1714 2276 5.057149 GGTAGATAATTTGATGCGTGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
1715 2277 5.050091 GTGGTAGATAATTTGATGCGTGAGG 60.050 44.000 0.00 0.00 0.00 3.86
1716 2278 5.523552 TGTGGTAGATAATTTGATGCGTGAG 59.476 40.000 0.00 0.00 0.00 3.51
1717 2279 5.423886 TGTGGTAGATAATTTGATGCGTGA 58.576 37.500 0.00 0.00 0.00 4.35
1718 2280 5.733226 TGTGGTAGATAATTTGATGCGTG 57.267 39.130 0.00 0.00 0.00 5.34
1719 2281 6.751514 TTTGTGGTAGATAATTTGATGCGT 57.248 33.333 0.00 0.00 0.00 5.24
1802 2364 4.082523 TACCGGGCTCAGCTGCAC 62.083 66.667 9.47 2.69 34.04 4.57
1803 2365 3.774528 CTACCGGGCTCAGCTGCA 61.775 66.667 9.47 0.00 34.04 4.41
1805 2367 2.599645 ATTGCTACCGGGCTCAGCTG 62.600 60.000 7.63 7.63 36.26 4.24
1806 2368 1.915078 AATTGCTACCGGGCTCAGCT 61.915 55.000 6.32 0.00 36.26 4.24
1807 2369 0.179056 TAATTGCTACCGGGCTCAGC 60.179 55.000 6.32 9.57 35.82 4.26
1808 2370 1.583054 GTAATTGCTACCGGGCTCAG 58.417 55.000 6.32 0.00 0.00 3.35
1809 2371 0.179468 GGTAATTGCTACCGGGCTCA 59.821 55.000 6.32 0.00 40.92 4.26
1810 2372 3.002277 GGTAATTGCTACCGGGCTC 57.998 57.895 6.32 0.00 40.92 4.70
2077 3665 1.760029 GACAGGATCTCCTCCAAGTCC 59.240 57.143 0.00 0.00 46.65 3.85
2165 3767 2.023673 TCAACACCACAAGAAAGCCAG 58.976 47.619 0.00 0.00 0.00 4.85
2187 3789 1.737793 CCTGCGAAGAAACCATACACC 59.262 52.381 0.00 0.00 0.00 4.16
2207 3810 6.344500 TCTTCTCTTATGTGCTGGAAGAATC 58.656 40.000 0.00 0.00 37.04 2.52
2224 3827 4.934356 ACTCCAAGTGATCTCTCTTCTCT 58.066 43.478 0.00 0.00 0.00 3.10
2321 3974 3.944422 AGTACGTGTTTGAAGCACTTG 57.056 42.857 10.35 0.00 34.91 3.16
2407 4063 5.870978 AGTACAATCATGTAACAACCCGTAC 59.129 40.000 0.00 0.00 43.41 3.67
2487 4150 7.567458 AGGAAATGCTGGCATAATTTTAACAT 58.433 30.769 8.55 0.00 35.31 2.71
2505 4168 2.145536 GCAAAGCACCCAAAGGAAATG 58.854 47.619 0.00 0.00 36.73 2.32
2557 4227 1.816835 GACTCACGGACAGACATACCA 59.183 52.381 0.00 0.00 0.00 3.25
2558 4228 2.093106 AGACTCACGGACAGACATACC 58.907 52.381 0.00 0.00 0.00 2.73
2559 4229 3.011119 AGAGACTCACGGACAGACATAC 58.989 50.000 5.02 0.00 0.00 2.39
2573 4243 8.679100 AGTTATACACAAGTCATACAGAGACTC 58.321 37.037 0.00 0.00 45.11 3.36
2582 4252 9.865321 GAGTTACCAAGTTATACACAAGTCATA 57.135 33.333 0.00 0.00 0.00 2.15
2590 4260 7.412137 AACGTTGAGTTACCAAGTTATACAC 57.588 36.000 0.00 0.00 42.14 2.90
2591 4261 7.710044 TCAAACGTTGAGTTACCAAGTTATACA 59.290 33.333 0.00 0.00 43.37 2.29
2730 4401 2.331451 GACAACGTGCACCCAAGC 59.669 61.111 12.15 0.00 0.00 4.01
2755 4426 9.565090 CATATGGTCAGGAATTGAAATCTTAGA 57.435 33.333 0.00 0.00 37.61 2.10
2805 4476 2.428530 GGGCAAGAATTTCCTGTGGATC 59.571 50.000 0.00 0.00 0.00 3.36
2837 4508 3.730715 GTCAGCCAATCTTGAAACAAACG 59.269 43.478 0.00 0.00 0.00 3.60
2858 4529 7.489239 AAGAGAGAAGCTACCTATTCTTTGT 57.511 36.000 0.00 0.00 35.93 2.83
2873 4544 3.919804 CAGCGAGTGAGAAAAGAGAGAAG 59.080 47.826 0.00 0.00 0.00 2.85
2875 4546 2.887783 ACAGCGAGTGAGAAAAGAGAGA 59.112 45.455 0.00 0.00 0.00 3.10
2876 4547 3.296322 ACAGCGAGTGAGAAAAGAGAG 57.704 47.619 0.00 0.00 0.00 3.20
2937 4608 7.400599 ACAGTCAAAATAGTACTCCGTCATA 57.599 36.000 0.00 0.00 0.00 2.15
2940 4611 6.850555 AGTACAGTCAAAATAGTACTCCGTC 58.149 40.000 0.00 0.00 42.38 4.79
2941 4612 6.830873 AGTACAGTCAAAATAGTACTCCGT 57.169 37.500 0.00 0.00 42.38 4.69
2942 4613 7.755591 TGTAGTACAGTCAAAATAGTACTCCG 58.244 38.462 0.00 0.00 44.22 4.63
2972 4643 4.893608 GGCAAGCCCTTCTTTGATAAAAA 58.106 39.130 0.00 0.00 31.27 1.94
2973 4644 4.535526 GGCAAGCCCTTCTTTGATAAAA 57.464 40.909 0.00 0.00 31.27 1.52
2987 4658 1.257750 AAAATCGGAAGGGGCAAGCC 61.258 55.000 1.52 1.52 0.00 4.35
2988 4659 0.173481 GAAAATCGGAAGGGGCAAGC 59.827 55.000 0.00 0.00 0.00 4.01
2989 4660 1.544724 TGAAAATCGGAAGGGGCAAG 58.455 50.000 0.00 0.00 0.00 4.01
2990 4661 2.230130 ATGAAAATCGGAAGGGGCAA 57.770 45.000 0.00 0.00 0.00 4.52
2991 4662 2.230130 AATGAAAATCGGAAGGGGCA 57.770 45.000 0.00 0.00 0.00 5.36
2992 4663 3.066760 CAGTAATGAAAATCGGAAGGGGC 59.933 47.826 0.00 0.00 0.00 5.80
2993 4664 4.523083 TCAGTAATGAAAATCGGAAGGGG 58.477 43.478 0.00 0.00 0.00 4.79
2994 4665 6.509418 TTTCAGTAATGAAAATCGGAAGGG 57.491 37.500 15.48 0.00 35.17 3.95
2995 4666 6.806739 GGTTTTCAGTAATGAAAATCGGAAGG 59.193 38.462 27.81 0.00 45.67 3.46
2996 4667 7.326063 GTGGTTTTCAGTAATGAAAATCGGAAG 59.674 37.037 27.81 0.00 46.34 3.46
2997 4668 7.013846 AGTGGTTTTCAGTAATGAAAATCGGAA 59.986 33.333 27.81 13.33 46.34 4.30
2998 4669 6.488683 AGTGGTTTTCAGTAATGAAAATCGGA 59.511 34.615 27.81 13.94 46.34 4.55
2999 4670 6.582295 CAGTGGTTTTCAGTAATGAAAATCGG 59.418 38.462 27.81 18.67 46.34 4.18
3000 4671 7.359595 TCAGTGGTTTTCAGTAATGAAAATCG 58.640 34.615 27.81 17.39 46.34 3.34
3001 4672 8.352942 ACTCAGTGGTTTTCAGTAATGAAAATC 58.647 33.333 27.81 27.28 45.67 2.17
3002 4673 8.237811 ACTCAGTGGTTTTCAGTAATGAAAAT 57.762 30.769 27.81 13.58 45.67 1.82
3003 4674 7.639113 ACTCAGTGGTTTTCAGTAATGAAAA 57.361 32.000 23.18 23.18 43.10 2.29
3004 4675 7.556275 AGAACTCAGTGGTTTTCAGTAATGAAA 59.444 33.333 13.98 13.98 36.17 2.69
3005 4676 7.054124 AGAACTCAGTGGTTTTCAGTAATGAA 58.946 34.615 0.56 0.56 0.00 2.57
3006 4677 6.591935 AGAACTCAGTGGTTTTCAGTAATGA 58.408 36.000 0.00 0.00 0.00 2.57
3007 4678 6.867662 AGAACTCAGTGGTTTTCAGTAATG 57.132 37.500 0.00 0.00 0.00 1.90
3008 4679 7.506114 TGTAGAACTCAGTGGTTTTCAGTAAT 58.494 34.615 0.00 0.00 0.00 1.89
3009 4680 6.880484 TGTAGAACTCAGTGGTTTTCAGTAA 58.120 36.000 0.00 0.00 0.00 2.24
3010 4681 6.322969 TCTGTAGAACTCAGTGGTTTTCAGTA 59.677 38.462 15.07 7.49 34.86 2.74
3011 4682 5.128827 TCTGTAGAACTCAGTGGTTTTCAGT 59.871 40.000 15.07 1.57 34.86 3.41
3012 4683 5.463724 GTCTGTAGAACTCAGTGGTTTTCAG 59.536 44.000 0.00 4.81 34.86 3.02
3013 4684 5.357257 GTCTGTAGAACTCAGTGGTTTTCA 58.643 41.667 0.00 0.00 34.86 2.69
3014 4685 4.444720 CGTCTGTAGAACTCAGTGGTTTTC 59.555 45.833 0.00 0.00 34.86 2.29
3015 4686 4.098960 TCGTCTGTAGAACTCAGTGGTTTT 59.901 41.667 0.00 0.00 34.86 2.43
3016 4687 3.635373 TCGTCTGTAGAACTCAGTGGTTT 59.365 43.478 0.00 0.00 34.86 3.27
3017 4688 3.220110 TCGTCTGTAGAACTCAGTGGTT 58.780 45.455 0.00 0.00 34.86 3.67
3018 4689 2.814919 CTCGTCTGTAGAACTCAGTGGT 59.185 50.000 0.00 0.00 34.86 4.16
3019 4690 2.814919 ACTCGTCTGTAGAACTCAGTGG 59.185 50.000 0.00 0.00 34.86 4.00
3020 4691 4.491234 AACTCGTCTGTAGAACTCAGTG 57.509 45.455 0.00 0.00 34.86 3.66
3021 4692 6.630444 TTAAACTCGTCTGTAGAACTCAGT 57.370 37.500 0.00 0.00 34.86 3.41
3022 4693 6.362820 GGTTTAAACTCGTCTGTAGAACTCAG 59.637 42.308 17.50 0.00 0.00 3.35
3023 4694 6.211515 GGTTTAAACTCGTCTGTAGAACTCA 58.788 40.000 17.50 0.00 0.00 3.41
3024 4695 5.341727 CGGTTTAAACTCGTCTGTAGAACTC 59.658 44.000 17.50 0.00 0.00 3.01
3025 4696 5.218139 CGGTTTAAACTCGTCTGTAGAACT 58.782 41.667 17.50 0.00 0.00 3.01
3026 4697 4.383948 CCGGTTTAAACTCGTCTGTAGAAC 59.616 45.833 17.50 0.00 0.00 3.01
3027 4698 4.278170 TCCGGTTTAAACTCGTCTGTAGAA 59.722 41.667 17.50 0.00 0.00 2.10
3028 4699 3.820467 TCCGGTTTAAACTCGTCTGTAGA 59.180 43.478 17.50 8.32 0.00 2.59
3029 4700 4.164822 TCCGGTTTAAACTCGTCTGTAG 57.835 45.455 17.50 6.47 0.00 2.74
3030 4701 4.298332 GTTCCGGTTTAAACTCGTCTGTA 58.702 43.478 17.50 0.48 0.00 2.74
3031 4702 3.126073 GTTCCGGTTTAAACTCGTCTGT 58.874 45.455 17.50 0.00 0.00 3.41
3032 4703 2.154389 CGTTCCGGTTTAAACTCGTCTG 59.846 50.000 17.50 7.64 0.00 3.51
3033 4704 2.034558 TCGTTCCGGTTTAAACTCGTCT 59.965 45.455 17.50 0.00 0.00 4.18
3034 4705 2.393764 TCGTTCCGGTTTAAACTCGTC 58.606 47.619 17.50 10.49 0.00 4.20
3035 4706 2.507339 TCGTTCCGGTTTAAACTCGT 57.493 45.000 17.50 0.00 0.00 4.18
3036 4707 3.857923 TTTCGTTCCGGTTTAAACTCG 57.142 42.857 17.50 17.31 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.