Multiple sequence alignment - TraesCS7B01G452000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G452000 chr7B 100.000 6126 0 0 1 6126 713459702 713453577 0.000000e+00 11313.0
1 TraesCS7B01G452000 chr7B 96.711 2311 55 5 3433 5741 713360278 713362569 0.000000e+00 3827.0
2 TraesCS7B01G452000 chr7B 82.320 3371 531 40 1167 4491 714598270 714594919 0.000000e+00 2863.0
3 TraesCS7B01G452000 chr7B 82.287 3376 532 36 1152 4491 714301477 714298132 0.000000e+00 2861.0
4 TraesCS7B01G452000 chr7B 82.285 3308 521 42 1222 4491 714461481 714458201 0.000000e+00 2802.0
5 TraesCS7B01G452000 chr7B 85.339 2510 313 41 2648 5127 713299568 713302052 0.000000e+00 2545.0
6 TraesCS7B01G452000 chr7B 81.397 3193 491 66 1927 5045 714359654 714356491 0.000000e+00 2510.0
7 TraesCS7B01G452000 chr7B 80.602 2593 453 28 1927 4491 714474636 714472066 0.000000e+00 1956.0
8 TraesCS7B01G452000 chr7B 90.185 1457 102 13 484 1916 713297175 713298614 0.000000e+00 1860.0
9 TraesCS7B01G452000 chr7B 91.762 1311 59 14 727 2010 713358960 713360248 0.000000e+00 1777.0
10 TraesCS7B01G452000 chr7B 80.057 2462 402 65 2790 5203 714620788 714618368 0.000000e+00 1744.0
11 TraesCS7B01G452000 chr7B 84.307 1644 219 23 1152 2762 714622417 714620780 0.000000e+00 1570.0
12 TraesCS7B01G452000 chr7B 81.196 1037 175 16 3470 4491 714520136 714519105 0.000000e+00 817.0
13 TraesCS7B01G452000 chr7B 75.977 1586 295 54 3664 5221 714604680 714603153 0.000000e+00 739.0
14 TraesCS7B01G452000 chr7B 99.736 379 0 1 5749 6126 713376525 713376903 0.000000e+00 693.0
15 TraesCS7B01G452000 chr7B 80.704 824 125 22 1147 1941 714522452 714521634 1.460000e-170 610.0
16 TraesCS7B01G452000 chr7B 92.537 67 3 1 371 435 713296745 713296811 1.820000e-15 95.3
17 TraesCS7B01G452000 chr7A 91.033 5654 352 78 367 5944 712440029 712445603 0.000000e+00 7489.0
18 TraesCS7B01G452000 chr7A 80.420 4050 624 119 1167 5142 712834897 712830943 0.000000e+00 2929.0
19 TraesCS7B01G452000 chr7A 81.769 2770 435 39 1760 4491 713122240 713119503 0.000000e+00 2254.0
20 TraesCS7B01G452000 chr7A 83.271 1614 243 18 1171 2765 713136014 713134409 0.000000e+00 1459.0
21 TraesCS7B01G452000 chr7A 86.420 162 9 7 5936 6087 712445641 712445799 1.370000e-36 165.0
22 TraesCS7B01G452000 chr7A 91.011 89 7 1 26 114 549532345 549532258 1.080000e-22 119.0
23 TraesCS7B01G452000 chr7A 90.000 90 8 1 25 114 50004314 50004226 1.400000e-21 115.0
24 TraesCS7B01G452000 chr7D 91.962 5362 267 62 390 5661 618889777 618895064 0.000000e+00 7363.0
25 TraesCS7B01G452000 chr7D 82.764 3394 508 50 1147 4491 619156526 619153161 0.000000e+00 2955.0
26 TraesCS7B01G452000 chr7D 82.429 1309 199 20 1147 2432 619160528 619159228 0.000000e+00 1114.0
27 TraesCS7B01G452000 chr7D 77.691 511 101 12 4573 5074 619153139 619152633 3.590000e-77 300.0
28 TraesCS7B01G452000 chr7D 88.889 90 9 1 27 115 221683570 221683481 6.490000e-20 110.0
29 TraesCS7B01G452000 chr3B 77.085 1619 309 44 1169 2747 814173370 814171774 0.000000e+00 878.0
30 TraesCS7B01G452000 chrUn 74.750 1398 271 51 3789 5172 284687079 284685750 8.970000e-153 551.0
31 TraesCS7B01G452000 chr2D 91.398 93 7 1 22 114 512165833 512165924 6.450000e-25 126.0
32 TraesCS7B01G452000 chr2D 92.500 80 6 0 35 114 2461026 2461105 1.400000e-21 115.0
33 TraesCS7B01G452000 chr2A 91.765 85 7 0 30 114 775976748 775976664 1.080000e-22 119.0
34 TraesCS7B01G452000 chr2B 90.588 85 8 0 30 114 781580584 781580500 5.020000e-21 113.0
35 TraesCS7B01G452000 chr1D 89.655 87 9 0 28 114 216718720 216718806 1.810000e-20 111.0
36 TraesCS7B01G452000 chr6B 87.912 91 11 0 26 116 462028691 462028781 2.330000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G452000 chr7B 713453577 713459702 6125 True 11313.000000 11313 100.000000 1 6126 1 chr7B.!!$R1 6125
1 TraesCS7B01G452000 chr7B 714594919 714598270 3351 True 2863.000000 2863 82.320000 1167 4491 1 chr7B.!!$R6 3324
2 TraesCS7B01G452000 chr7B 714298132 714301477 3345 True 2861.000000 2861 82.287000 1152 4491 1 chr7B.!!$R2 3339
3 TraesCS7B01G452000 chr7B 713358960 713362569 3609 False 2802.000000 3827 94.236500 727 5741 2 chr7B.!!$F3 5014
4 TraesCS7B01G452000 chr7B 714458201 714461481 3280 True 2802.000000 2802 82.285000 1222 4491 1 chr7B.!!$R4 3269
5 TraesCS7B01G452000 chr7B 714356491 714359654 3163 True 2510.000000 2510 81.397000 1927 5045 1 chr7B.!!$R3 3118
6 TraesCS7B01G452000 chr7B 714472066 714474636 2570 True 1956.000000 1956 80.602000 1927 4491 1 chr7B.!!$R5 2564
7 TraesCS7B01G452000 chr7B 714618368 714622417 4049 True 1657.000000 1744 82.182000 1152 5203 2 chr7B.!!$R9 4051
8 TraesCS7B01G452000 chr7B 713296745 713302052 5307 False 1500.100000 2545 89.353667 371 5127 3 chr7B.!!$F2 4756
9 TraesCS7B01G452000 chr7B 714603153 714604680 1527 True 739.000000 739 75.977000 3664 5221 1 chr7B.!!$R7 1557
10 TraesCS7B01G452000 chr7B 714519105 714522452 3347 True 713.500000 817 80.950000 1147 4491 2 chr7B.!!$R8 3344
11 TraesCS7B01G452000 chr7A 712440029 712445799 5770 False 3827.000000 7489 88.726500 367 6087 2 chr7A.!!$F1 5720
12 TraesCS7B01G452000 chr7A 712830943 712834897 3954 True 2929.000000 2929 80.420000 1167 5142 1 chr7A.!!$R3 3975
13 TraesCS7B01G452000 chr7A 713119503 713122240 2737 True 2254.000000 2254 81.769000 1760 4491 1 chr7A.!!$R4 2731
14 TraesCS7B01G452000 chr7A 713134409 713136014 1605 True 1459.000000 1459 83.271000 1171 2765 1 chr7A.!!$R5 1594
15 TraesCS7B01G452000 chr7D 618889777 618895064 5287 False 7363.000000 7363 91.962000 390 5661 1 chr7D.!!$F1 5271
16 TraesCS7B01G452000 chr7D 619152633 619160528 7895 True 1456.333333 2955 80.961333 1147 5074 3 chr7D.!!$R2 3927
17 TraesCS7B01G452000 chr3B 814171774 814173370 1596 True 878.000000 878 77.085000 1169 2747 1 chr3B.!!$R1 1578
18 TraesCS7B01G452000 chrUn 284685750 284687079 1329 True 551.000000 551 74.750000 3789 5172 1 chrUn.!!$R1 1383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.105039 GCATGGGACGGAAGGAGTAG 59.895 60.000 0.0 0.0 0.00 2.57 F
494 824 0.338120 CCTCCTCCTCCTCTTCCTGT 59.662 60.000 0.0 0.0 0.00 4.00 F
1550 2007 0.179004 TGGGAAGAAAGCTCCGCAAA 60.179 50.000 0.0 0.0 0.00 3.68 F
1553 2010 2.416027 GGGAAGAAAGCTCCGCAAAATC 60.416 50.000 0.0 0.0 0.00 2.17 F
1592 2049 3.094572 CCTTGTGGCTGAAATGAAGGAT 58.905 45.455 0.0 0.0 33.17 3.24 F
3444 8309 0.253044 ATGGACTGTTGGGTCGGATG 59.747 55.000 0.0 0.0 37.12 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1550 2007 0.744414 CCTCAATGGTCCGCACGATT 60.744 55.000 0.0 0.0 31.50 3.34 R
1596 2053 1.001487 TGGTTGCTGATGCTCAAAACG 60.001 47.619 0.0 0.0 40.48 3.60 R
3437 8302 2.333926 TCATCAACAACGTCATCCGAC 58.666 47.619 0.0 0.0 40.70 4.79 R
3444 8309 4.627467 ACTGCTAGATTCATCAACAACGTC 59.373 41.667 0.0 0.0 0.00 4.34 R
3686 8578 2.075338 CTCTCAAAGCAGACAAGCTCC 58.925 52.381 0.0 0.0 45.89 4.70 R
5499 10494 0.740737 AAGAATACCGCCATGCTTGC 59.259 50.000 0.0 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.703730 AAAAATATTACTCCCTCCGTCCA 57.296 39.130 0.00 0.00 0.00 4.02
44 45 5.703730 AAAATATTACTCCCTCCGTCCAA 57.296 39.130 0.00 0.00 0.00 3.53
45 46 4.684484 AATATTACTCCCTCCGTCCAAC 57.316 45.455 0.00 0.00 0.00 3.77
46 47 1.946984 ATTACTCCCTCCGTCCAACA 58.053 50.000 0.00 0.00 0.00 3.33
47 48 1.719529 TTACTCCCTCCGTCCAACAA 58.280 50.000 0.00 0.00 0.00 2.83
48 49 1.946984 TACTCCCTCCGTCCAACAAT 58.053 50.000 0.00 0.00 0.00 2.71
49 50 0.324943 ACTCCCTCCGTCCAACAATG 59.675 55.000 0.00 0.00 0.00 2.82
50 51 0.324943 CTCCCTCCGTCCAACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
51 52 1.553248 CTCCCTCCGTCCAACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
52 53 1.979308 TCCCTCCGTCCAACAATGTAA 59.021 47.619 0.00 0.00 0.00 2.41
53 54 2.027561 TCCCTCCGTCCAACAATGTAAG 60.028 50.000 0.00 0.00 0.00 2.34
54 55 2.027561 CCCTCCGTCCAACAATGTAAGA 60.028 50.000 0.00 0.00 0.00 2.10
55 56 3.370527 CCCTCCGTCCAACAATGTAAGAT 60.371 47.826 0.00 0.00 0.00 2.40
56 57 3.623060 CCTCCGTCCAACAATGTAAGATG 59.377 47.826 0.00 0.00 0.00 2.90
57 58 4.253685 CTCCGTCCAACAATGTAAGATGT 58.746 43.478 0.00 0.00 0.00 3.06
58 59 4.647611 TCCGTCCAACAATGTAAGATGTT 58.352 39.130 0.00 0.00 40.24 2.71
59 60 5.067273 TCCGTCCAACAATGTAAGATGTTT 58.933 37.500 0.00 0.00 37.66 2.83
60 61 5.533154 TCCGTCCAACAATGTAAGATGTTTT 59.467 36.000 0.00 0.00 37.66 2.43
61 62 6.039941 TCCGTCCAACAATGTAAGATGTTTTT 59.960 34.615 0.00 0.00 37.66 1.94
62 63 6.143758 CCGTCCAACAATGTAAGATGTTTTTG 59.856 38.462 0.00 0.00 37.66 2.44
63 64 6.345723 CGTCCAACAATGTAAGATGTTTTTGC 60.346 38.462 0.00 0.00 37.66 3.68
64 65 6.478344 GTCCAACAATGTAAGATGTTTTTGCA 59.522 34.615 0.00 0.00 37.66 4.08
65 66 7.010923 GTCCAACAATGTAAGATGTTTTTGCAA 59.989 33.333 0.00 0.00 37.66 4.08
66 67 7.224362 TCCAACAATGTAAGATGTTTTTGCAAG 59.776 33.333 0.00 0.00 37.66 4.01
67 68 6.529463 ACAATGTAAGATGTTTTTGCAAGC 57.471 33.333 0.00 0.00 0.00 4.01
68 69 6.282930 ACAATGTAAGATGTTTTTGCAAGCT 58.717 32.000 0.00 0.00 0.00 3.74
69 70 7.432869 ACAATGTAAGATGTTTTTGCAAGCTA 58.567 30.769 0.00 0.00 0.00 3.32
70 71 8.090214 ACAATGTAAGATGTTTTTGCAAGCTAT 58.910 29.630 0.00 0.00 0.00 2.97
71 72 8.377681 CAATGTAAGATGTTTTTGCAAGCTATG 58.622 33.333 0.00 0.00 0.00 2.23
72 73 6.980593 TGTAAGATGTTTTTGCAAGCTATGT 58.019 32.000 0.00 0.00 0.00 2.29
73 74 7.432869 TGTAAGATGTTTTTGCAAGCTATGTT 58.567 30.769 0.00 1.58 0.00 2.71
74 75 8.572185 TGTAAGATGTTTTTGCAAGCTATGTTA 58.428 29.630 0.00 0.68 0.00 2.41
75 76 9.065871 GTAAGATGTTTTTGCAAGCTATGTTAG 57.934 33.333 0.00 0.00 0.00 2.34
93 94 9.793252 CTATGTTAGCTTGCAAAAATGTCTTAT 57.207 29.630 0.00 0.00 0.00 1.73
95 96 9.793252 ATGTTAGCTTGCAAAAATGTCTTATAG 57.207 29.630 0.00 0.00 0.00 1.31
96 97 7.754924 TGTTAGCTTGCAAAAATGTCTTATAGC 59.245 33.333 0.00 0.00 0.00 2.97
97 98 6.271488 AGCTTGCAAAAATGTCTTATAGCA 57.729 33.333 0.00 0.00 0.00 3.49
98 99 6.870769 AGCTTGCAAAAATGTCTTATAGCAT 58.129 32.000 0.00 0.00 0.00 3.79
99 100 6.755141 AGCTTGCAAAAATGTCTTATAGCATG 59.245 34.615 0.00 0.00 0.00 4.06
100 101 6.019318 GCTTGCAAAAATGTCTTATAGCATGG 60.019 38.462 0.00 0.00 0.00 3.66
101 102 5.904941 TGCAAAAATGTCTTATAGCATGGG 58.095 37.500 0.00 0.00 0.00 4.00
102 103 5.655974 TGCAAAAATGTCTTATAGCATGGGA 59.344 36.000 0.00 0.00 0.00 4.37
103 104 5.979517 GCAAAAATGTCTTATAGCATGGGAC 59.020 40.000 0.00 0.00 0.00 4.46
104 105 6.201517 CAAAAATGTCTTATAGCATGGGACG 58.798 40.000 0.00 0.00 0.00 4.79
105 106 3.685139 ATGTCTTATAGCATGGGACGG 57.315 47.619 0.00 0.00 0.00 4.79
106 107 2.673258 TGTCTTATAGCATGGGACGGA 58.327 47.619 0.00 0.00 0.00 4.69
107 108 3.035363 TGTCTTATAGCATGGGACGGAA 58.965 45.455 0.00 0.00 0.00 4.30
108 109 3.069586 TGTCTTATAGCATGGGACGGAAG 59.930 47.826 0.00 0.00 0.00 3.46
109 110 2.632996 TCTTATAGCATGGGACGGAAGG 59.367 50.000 0.00 0.00 0.00 3.46
110 111 2.391926 TATAGCATGGGACGGAAGGA 57.608 50.000 0.00 0.00 0.00 3.36
111 112 1.051812 ATAGCATGGGACGGAAGGAG 58.948 55.000 0.00 0.00 0.00 3.69
112 113 0.325296 TAGCATGGGACGGAAGGAGT 60.325 55.000 0.00 0.00 0.00 3.85
113 114 0.325296 AGCATGGGACGGAAGGAGTA 60.325 55.000 0.00 0.00 0.00 2.59
114 115 0.105039 GCATGGGACGGAAGGAGTAG 59.895 60.000 0.00 0.00 0.00 2.57
115 116 1.486211 CATGGGACGGAAGGAGTAGT 58.514 55.000 0.00 0.00 0.00 2.73
116 117 1.409427 CATGGGACGGAAGGAGTAGTC 59.591 57.143 0.00 0.00 0.00 2.59
135 136 9.674068 GAGTAGTCCTCCTATTTGAAGATTTTT 57.326 33.333 0.00 0.00 33.79 1.94
207 208 8.743085 TTTTGATGATGAGATAGGAAAAGGAG 57.257 34.615 0.00 0.00 0.00 3.69
208 209 7.681259 TTGATGATGAGATAGGAAAAGGAGA 57.319 36.000 0.00 0.00 0.00 3.71
209 210 7.300556 TGATGATGAGATAGGAAAAGGAGAG 57.699 40.000 0.00 0.00 0.00 3.20
210 211 7.071917 TGATGATGAGATAGGAAAAGGAGAGA 58.928 38.462 0.00 0.00 0.00 3.10
211 212 7.566509 TGATGATGAGATAGGAAAAGGAGAGAA 59.433 37.037 0.00 0.00 0.00 2.87
212 213 7.739995 TGATGAGATAGGAAAAGGAGAGAAA 57.260 36.000 0.00 0.00 0.00 2.52
213 214 8.150827 TGATGAGATAGGAAAAGGAGAGAAAA 57.849 34.615 0.00 0.00 0.00 2.29
214 215 8.263640 TGATGAGATAGGAAAAGGAGAGAAAAG 58.736 37.037 0.00 0.00 0.00 2.27
215 216 6.951971 TGAGATAGGAAAAGGAGAGAAAAGG 58.048 40.000 0.00 0.00 0.00 3.11
216 217 6.069963 TGAGATAGGAAAAGGAGAGAAAAGGG 60.070 42.308 0.00 0.00 0.00 3.95
217 218 6.032693 AGATAGGAAAAGGAGAGAAAAGGGA 58.967 40.000 0.00 0.00 0.00 4.20
218 219 4.649267 AGGAAAAGGAGAGAAAAGGGAG 57.351 45.455 0.00 0.00 0.00 4.30
219 220 3.984090 AGGAAAAGGAGAGAAAAGGGAGT 59.016 43.478 0.00 0.00 0.00 3.85
220 221 4.075682 GGAAAAGGAGAGAAAAGGGAGTG 58.924 47.826 0.00 0.00 0.00 3.51
221 222 4.202472 GGAAAAGGAGAGAAAAGGGAGTGA 60.202 45.833 0.00 0.00 0.00 3.41
222 223 5.515710 GGAAAAGGAGAGAAAAGGGAGTGAT 60.516 44.000 0.00 0.00 0.00 3.06
223 224 4.566426 AAGGAGAGAAAAGGGAGTGATG 57.434 45.455 0.00 0.00 0.00 3.07
224 225 2.843113 AGGAGAGAAAAGGGAGTGATGG 59.157 50.000 0.00 0.00 0.00 3.51
225 226 2.840651 GGAGAGAAAAGGGAGTGATGGA 59.159 50.000 0.00 0.00 0.00 3.41
226 227 3.369997 GGAGAGAAAAGGGAGTGATGGAC 60.370 52.174 0.00 0.00 0.00 4.02
227 228 2.573915 AGAGAAAAGGGAGTGATGGACC 59.426 50.000 0.00 0.00 0.00 4.46
228 229 2.573915 GAGAAAAGGGAGTGATGGACCT 59.426 50.000 0.00 0.00 34.04 3.85
229 230 2.307098 AGAAAAGGGAGTGATGGACCTG 59.693 50.000 0.00 0.00 32.66 4.00
230 231 0.995024 AAAGGGAGTGATGGACCTGG 59.005 55.000 0.00 0.00 32.66 4.45
231 232 0.916358 AAGGGAGTGATGGACCTGGG 60.916 60.000 0.00 0.00 32.66 4.45
232 233 2.592308 GGAGTGATGGACCTGGGC 59.408 66.667 0.00 0.00 0.00 5.36
233 234 2.592308 GAGTGATGGACCTGGGCC 59.408 66.667 13.16 13.16 0.00 5.80
234 235 1.997874 GAGTGATGGACCTGGGCCT 60.998 63.158 21.75 5.03 0.00 5.19
235 236 0.691078 GAGTGATGGACCTGGGCCTA 60.691 60.000 21.75 6.66 0.00 3.93
236 237 0.692419 AGTGATGGACCTGGGCCTAG 60.692 60.000 21.75 9.64 0.00 3.02
237 238 0.983378 GTGATGGACCTGGGCCTAGT 60.983 60.000 21.75 5.70 0.00 2.57
238 239 0.982852 TGATGGACCTGGGCCTAGTG 60.983 60.000 21.75 9.08 0.00 2.74
239 240 1.694169 ATGGACCTGGGCCTAGTGG 60.694 63.158 21.75 3.89 0.00 4.00
240 241 2.285442 GGACCTGGGCCTAGTGGT 60.285 66.667 12.69 7.64 35.27 4.16
241 242 2.670148 GGACCTGGGCCTAGTGGTG 61.670 68.421 12.69 1.75 35.27 4.17
242 243 2.610859 ACCTGGGCCTAGTGGTGG 60.611 66.667 15.86 2.25 35.27 4.61
243 244 3.411517 CCTGGGCCTAGTGGTGGG 61.412 72.222 15.86 0.00 35.27 4.61
250 251 4.778143 CTAGTGGTGGGCCGGCAC 62.778 72.222 30.85 28.40 37.67 5.01
254 255 4.612279 TGGTGGGCCGGCACATTT 62.612 61.111 37.80 0.00 37.67 2.32
255 256 3.310307 GGTGGGCCGGCACATTTT 61.310 61.111 37.80 0.00 0.00 1.82
256 257 2.740438 GTGGGCCGGCACATTTTT 59.260 55.556 37.80 0.00 0.00 1.94
257 258 1.374125 GTGGGCCGGCACATTTTTC 60.374 57.895 37.80 18.69 0.00 2.29
258 259 2.264480 GGGCCGGCACATTTTTCC 59.736 61.111 30.85 13.99 0.00 3.13
259 260 2.282783 GGGCCGGCACATTTTTCCT 61.283 57.895 30.85 0.00 0.00 3.36
260 261 1.671166 GGCCGGCACATTTTTCCTT 59.329 52.632 30.85 0.00 0.00 3.36
261 262 0.389817 GGCCGGCACATTTTTCCTTC 60.390 55.000 30.85 0.98 0.00 3.46
262 263 0.603065 GCCGGCACATTTTTCCTTCT 59.397 50.000 24.80 0.00 0.00 2.85
263 264 1.402852 GCCGGCACATTTTTCCTTCTC 60.403 52.381 24.80 0.00 0.00 2.87
264 265 1.135689 CCGGCACATTTTTCCTTCTCG 60.136 52.381 0.00 0.00 0.00 4.04
265 266 1.535462 CGGCACATTTTTCCTTCTCGT 59.465 47.619 0.00 0.00 0.00 4.18
266 267 2.031157 CGGCACATTTTTCCTTCTCGTT 60.031 45.455 0.00 0.00 0.00 3.85
267 268 3.565516 GGCACATTTTTCCTTCTCGTTC 58.434 45.455 0.00 0.00 0.00 3.95
268 269 3.565516 GCACATTTTTCCTTCTCGTTCC 58.434 45.455 0.00 0.00 0.00 3.62
269 270 3.611766 GCACATTTTTCCTTCTCGTTCCC 60.612 47.826 0.00 0.00 0.00 3.97
270 271 3.057526 CACATTTTTCCTTCTCGTTCCCC 60.058 47.826 0.00 0.00 0.00 4.81
271 272 3.181433 ACATTTTTCCTTCTCGTTCCCCT 60.181 43.478 0.00 0.00 0.00 4.79
272 273 3.588210 TTTTTCCTTCTCGTTCCCCTT 57.412 42.857 0.00 0.00 0.00 3.95
273 274 2.561478 TTTCCTTCTCGTTCCCCTTG 57.439 50.000 0.00 0.00 0.00 3.61
274 275 1.724545 TTCCTTCTCGTTCCCCTTGA 58.275 50.000 0.00 0.00 0.00 3.02
275 276 1.724545 TCCTTCTCGTTCCCCTTGAA 58.275 50.000 0.00 0.00 0.00 2.69
276 277 2.051692 TCCTTCTCGTTCCCCTTGAAA 58.948 47.619 0.00 0.00 33.94 2.69
277 278 2.038557 TCCTTCTCGTTCCCCTTGAAAG 59.961 50.000 0.00 0.00 33.94 2.62
278 279 2.038557 CCTTCTCGTTCCCCTTGAAAGA 59.961 50.000 0.00 0.00 38.84 2.52
279 280 3.496160 CCTTCTCGTTCCCCTTGAAAGAA 60.496 47.826 0.00 0.00 40.27 2.52
280 281 3.402628 TCTCGTTCCCCTTGAAAGAAG 57.597 47.619 0.00 0.00 40.27 2.85
281 282 2.969950 TCTCGTTCCCCTTGAAAGAAGA 59.030 45.455 0.00 0.00 40.27 2.87
282 283 3.389983 TCTCGTTCCCCTTGAAAGAAGAA 59.610 43.478 0.00 0.00 40.27 2.52
283 284 3.740115 TCGTTCCCCTTGAAAGAAGAAG 58.260 45.455 0.00 0.00 38.32 2.85
284 285 3.389983 TCGTTCCCCTTGAAAGAAGAAGA 59.610 43.478 0.00 0.00 38.32 2.87
285 286 4.134563 CGTTCCCCTTGAAAGAAGAAGAA 58.865 43.478 0.00 0.00 34.77 2.52
286 287 4.214332 CGTTCCCCTTGAAAGAAGAAGAAG 59.786 45.833 0.00 0.00 34.77 2.85
287 288 4.373156 TCCCCTTGAAAGAAGAAGAAGG 57.627 45.455 0.00 0.00 34.15 3.46
289 290 3.425659 CCCTTGAAAGAAGAAGAAGGGG 58.574 50.000 0.00 0.00 46.39 4.79
290 291 3.074538 CCCTTGAAAGAAGAAGAAGGGGA 59.925 47.826 0.00 0.00 46.39 4.81
291 292 4.264128 CCCTTGAAAGAAGAAGAAGGGGAT 60.264 45.833 0.00 0.00 46.39 3.85
292 293 5.328565 CCTTGAAAGAAGAAGAAGGGGATT 58.671 41.667 0.00 0.00 31.24 3.01
293 294 5.184671 CCTTGAAAGAAGAAGAAGGGGATTG 59.815 44.000 0.00 0.00 31.24 2.67
294 295 5.324832 TGAAAGAAGAAGAAGGGGATTGT 57.675 39.130 0.00 0.00 0.00 2.71
295 296 5.316987 TGAAAGAAGAAGAAGGGGATTGTC 58.683 41.667 0.00 0.00 0.00 3.18
296 297 5.073691 TGAAAGAAGAAGAAGGGGATTGTCT 59.926 40.000 0.00 0.00 0.00 3.41
297 298 6.272324 TGAAAGAAGAAGAAGGGGATTGTCTA 59.728 38.462 0.00 0.00 0.00 2.59
298 299 6.704056 AAGAAGAAGAAGGGGATTGTCTAA 57.296 37.500 0.00 0.00 0.00 2.10
299 300 6.704056 AGAAGAAGAAGGGGATTGTCTAAA 57.296 37.500 0.00 0.00 0.00 1.85
300 301 7.091533 AGAAGAAGAAGGGGATTGTCTAAAA 57.908 36.000 0.00 0.00 0.00 1.52
301 302 7.526918 AGAAGAAGAAGGGGATTGTCTAAAAA 58.473 34.615 0.00 0.00 0.00 1.94
339 340 8.547481 AAAAAGAAGAAGGGGAATTGTCTAAA 57.453 30.769 0.00 0.00 0.00 1.85
340 341 8.547481 AAAAGAAGAAGGGGAATTGTCTAAAA 57.453 30.769 0.00 0.00 0.00 1.52
341 342 8.547481 AAAGAAGAAGGGGAATTGTCTAAAAA 57.453 30.769 0.00 0.00 0.00 1.94
386 387 1.741706 TCCTCGTCGTCTACAATGGTC 59.258 52.381 0.00 0.00 0.00 4.02
403 406 1.307430 TCGATCCCCCAATCCCACA 60.307 57.895 0.00 0.00 0.00 4.17
445 460 4.700365 GCCGCCGTGTTTCCTTGC 62.700 66.667 0.00 0.00 0.00 4.01
451 466 1.202359 GCCGTGTTTCCTTGCTTCAAA 60.202 47.619 0.00 0.00 0.00 2.69
452 467 2.737039 GCCGTGTTTCCTTGCTTCAAAA 60.737 45.455 0.00 0.00 0.00 2.44
466 481 2.490328 TCAAAAGAGCACCGCAAAAG 57.510 45.000 0.00 0.00 0.00 2.27
467 482 2.020720 TCAAAAGAGCACCGCAAAAGA 58.979 42.857 0.00 0.00 0.00 2.52
477 498 0.962356 CCGCAAAAGACCATGCTCCT 60.962 55.000 0.00 0.00 40.39 3.69
494 824 0.338120 CCTCCTCCTCCTCTTCCTGT 59.662 60.000 0.00 0.00 0.00 4.00
557 887 4.853142 CGGGGTGGGGGATCGAGA 62.853 72.222 0.00 0.00 0.00 4.04
566 896 1.045911 GGGGATCGAGAGACCAAGCT 61.046 60.000 0.00 0.00 46.97 3.74
665 1012 3.105782 ACATGTGCGTGCGTCTCG 61.106 61.111 0.00 0.00 0.00 4.04
839 1216 4.265893 TGCAAAGTTCTAATAATGGCGGA 58.734 39.130 0.00 0.00 0.00 5.54
923 1306 1.315257 CCATTCAAGAAGCCCCACCG 61.315 60.000 0.00 0.00 0.00 4.94
928 1311 1.073199 AAGAAGCCCCACCGTCTTG 59.927 57.895 0.00 0.00 33.35 3.02
1550 2007 0.179004 TGGGAAGAAAGCTCCGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
1553 2010 2.416027 GGGAAGAAAGCTCCGCAAAATC 60.416 50.000 0.00 0.00 0.00 2.17
1592 2049 3.094572 CCTTGTGGCTGAAATGAAGGAT 58.905 45.455 0.00 0.00 33.17 3.24
1596 2053 3.511146 TGTGGCTGAAATGAAGGATTTCC 59.489 43.478 0.00 0.00 46.66 3.13
1602 2059 5.119125 GCTGAAATGAAGGATTTCCGTTTTG 59.881 40.000 0.00 0.00 46.66 2.44
1754 2223 4.484537 AGCTAACAATGCAGATCTCACT 57.515 40.909 0.00 0.00 0.00 3.41
3152 8014 5.997746 TGTATCTCTTTGTGAACTTCCAAGG 59.002 40.000 0.00 0.00 0.00 3.61
3437 8302 5.243730 ACTGACATTAAAATGGACTGTTGGG 59.756 40.000 7.56 0.00 40.70 4.12
3444 8309 0.253044 ATGGACTGTTGGGTCGGATG 59.747 55.000 0.00 0.00 37.12 3.51
3686 8578 3.603532 TCTGAAGGAGCTTACATTGCAG 58.396 45.455 0.00 0.00 0.00 4.41
3798 8696 7.471721 CATTAGTCAGTGTGAAAAGTTGACAA 58.528 34.615 5.81 0.00 40.35 3.18
3827 8725 0.898326 GGCAACCGACCTTCCCAAAT 60.898 55.000 0.00 0.00 0.00 2.32
4048 8961 0.622665 AGGGAAGTTCTGGATGGCAG 59.377 55.000 2.25 0.00 0.00 4.85
4238 9160 4.015084 CCTTGAGGAAGCTTGTGATTCAT 58.985 43.478 2.10 0.00 40.08 2.57
4491 9416 7.574021 ATTCATCAAGGGCCATCTAGTATAA 57.426 36.000 6.18 0.00 0.00 0.98
4518 9443 5.306394 AGGTGTCATCATCATCATCATCAC 58.694 41.667 0.00 0.00 0.00 3.06
4533 9467 4.347360 TCATCACCATCATCATCTGGAC 57.653 45.455 0.00 0.00 36.35 4.02
4534 9468 2.896745 TCACCATCATCATCTGGACG 57.103 50.000 0.00 0.00 36.35 4.79
4991 9963 8.871686 AGCAAAGTAAATGTTCTTTAAACCTG 57.128 30.769 0.00 0.00 33.38 4.00
5499 10494 7.756722 GGTCATGTCATTGTATTTCTTTTCCAG 59.243 37.037 0.00 0.00 0.00 3.86
5703 10702 5.708736 TCCCCTTAATACTCTGCATCAAA 57.291 39.130 0.00 0.00 0.00 2.69
5748 10747 3.379372 CAGATTGTGCAAAGGGACATAGG 59.621 47.826 0.00 0.00 45.24 2.57
5765 10764 6.446781 ACATAGGTGCTGATTTTGAAGATG 57.553 37.500 0.00 0.00 0.00 2.90
5766 10765 5.948162 ACATAGGTGCTGATTTTGAAGATGT 59.052 36.000 0.00 0.00 0.00 3.06
5767 10766 7.112122 ACATAGGTGCTGATTTTGAAGATGTA 58.888 34.615 0.00 0.00 0.00 2.29
5768 10767 7.281774 ACATAGGTGCTGATTTTGAAGATGTAG 59.718 37.037 0.00 0.00 0.00 2.74
5769 10768 4.397417 AGGTGCTGATTTTGAAGATGTAGC 59.603 41.667 0.00 0.00 0.00 3.58
5770 10769 4.397417 GGTGCTGATTTTGAAGATGTAGCT 59.603 41.667 0.00 0.00 0.00 3.32
5771 10770 5.105997 GGTGCTGATTTTGAAGATGTAGCTT 60.106 40.000 0.00 0.00 0.00 3.74
5772 10771 5.798934 GTGCTGATTTTGAAGATGTAGCTTG 59.201 40.000 0.00 0.00 0.00 4.01
5773 10772 4.797349 GCTGATTTTGAAGATGTAGCTTGC 59.203 41.667 0.00 0.00 0.00 4.01
5774 10773 5.314923 TGATTTTGAAGATGTAGCTTGCC 57.685 39.130 0.00 0.00 0.00 4.52
5775 10774 5.012239 TGATTTTGAAGATGTAGCTTGCCT 58.988 37.500 0.00 0.00 0.00 4.75
5776 10775 4.771590 TTTTGAAGATGTAGCTTGCCTG 57.228 40.909 0.00 0.00 0.00 4.85
5777 10776 3.423539 TTGAAGATGTAGCTTGCCTGT 57.576 42.857 0.00 0.00 0.00 4.00
5778 10777 4.551702 TTGAAGATGTAGCTTGCCTGTA 57.448 40.909 0.00 0.00 0.00 2.74
5779 10778 4.128925 TGAAGATGTAGCTTGCCTGTAG 57.871 45.455 0.00 0.00 0.00 2.74
5780 10779 3.769300 TGAAGATGTAGCTTGCCTGTAGA 59.231 43.478 0.00 0.00 0.00 2.59
5781 10780 4.406972 TGAAGATGTAGCTTGCCTGTAGAT 59.593 41.667 0.00 0.00 0.00 1.98
5782 10781 5.104776 TGAAGATGTAGCTTGCCTGTAGATT 60.105 40.000 0.00 0.00 0.00 2.40
5783 10782 6.098266 TGAAGATGTAGCTTGCCTGTAGATTA 59.902 38.462 0.00 0.00 0.00 1.75
5784 10783 6.095432 AGATGTAGCTTGCCTGTAGATTAG 57.905 41.667 0.00 0.00 0.00 1.73
5785 10784 4.060038 TGTAGCTTGCCTGTAGATTAGC 57.940 45.455 0.00 0.00 0.00 3.09
5786 10785 3.450817 TGTAGCTTGCCTGTAGATTAGCA 59.549 43.478 0.00 0.00 0.00 3.49
5787 10786 3.634397 AGCTTGCCTGTAGATTAGCAA 57.366 42.857 0.00 0.00 42.60 3.91
5851 10852 5.867903 TGGAAACACAGGAATGACATTTT 57.132 34.783 1.39 0.00 33.40 1.82
5908 10909 1.751927 CTGGCACATCTGGAAGCCC 60.752 63.158 0.00 0.00 46.45 5.19
5920 10921 1.431243 TGGAAGCCCCAATGTTAACCT 59.569 47.619 2.48 0.00 43.29 3.50
5936 10937 0.185901 ACCTGCTGCTGGGAAGAAAA 59.814 50.000 26.30 0.00 0.00 2.29
5937 10938 0.886563 CCTGCTGCTGGGAAGAAAAG 59.113 55.000 16.96 0.00 0.00 2.27
5939 10940 2.233271 CTGCTGCTGGGAAGAAAAGAA 58.767 47.619 0.00 0.00 0.00 2.52
5940 10941 1.956477 TGCTGCTGGGAAGAAAAGAAC 59.044 47.619 0.00 0.00 0.00 3.01
5961 11005 5.948992 ACTTGTTCACTGAAGAATTAGGC 57.051 39.130 2.03 0.00 0.00 3.93
5963 11007 5.471456 ACTTGTTCACTGAAGAATTAGGCTG 59.529 40.000 0.00 0.00 0.00 4.85
5978 11022 7.613411 AGAATTAGGCTGCTCTGTTATTTTCTT 59.387 33.333 0.00 0.00 0.00 2.52
6000 11053 4.016444 TCAGTTTCTTGCAGTGTTTCCTT 58.984 39.130 0.00 0.00 0.00 3.36
6039 11092 5.186021 CGATATGTATCTACCTGGAGCCTTT 59.814 44.000 0.00 0.00 0.00 3.11
6043 11096 3.636153 ATCTACCTGGAGCCTTTTGAC 57.364 47.619 0.00 0.00 0.00 3.18
6057 11110 3.181510 CCTTTTGACGCCTGTTACTATGC 60.182 47.826 0.00 0.00 0.00 3.14
6063 11116 1.996898 CGCCTGTTACTATGCGTTTCA 59.003 47.619 0.00 0.00 41.95 2.69
6066 11119 4.588278 GCCTGTTACTATGCGTTTCATTC 58.412 43.478 0.00 0.00 36.63 2.67
6087 11140 0.179103 CAATGAAAATGGAGCGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
6088 11141 1.666209 AATGAAAATGGAGCGGGGCG 61.666 55.000 0.00 0.00 0.00 6.13
6089 11142 3.518068 GAAAATGGAGCGGGGCGG 61.518 66.667 0.00 0.00 0.00 6.13
6118 11171 2.574212 GCGTGCGCCTTTTGATCG 60.574 61.111 4.18 0.00 34.56 3.69
6119 11172 3.022401 GCGTGCGCCTTTTGATCGA 62.022 57.895 4.18 0.00 34.56 3.59
6120 11173 1.715585 CGTGCGCCTTTTGATCGAT 59.284 52.632 4.18 0.00 0.00 3.59
6121 11174 0.096976 CGTGCGCCTTTTGATCGATT 59.903 50.000 4.18 0.00 0.00 3.34
6122 11175 1.465689 CGTGCGCCTTTTGATCGATTT 60.466 47.619 4.18 0.00 0.00 2.17
6123 11176 2.595386 GTGCGCCTTTTGATCGATTTT 58.405 42.857 4.18 0.00 0.00 1.82
6124 11177 2.594214 GTGCGCCTTTTGATCGATTTTC 59.406 45.455 4.18 0.00 0.00 2.29
6125 11178 2.487762 TGCGCCTTTTGATCGATTTTCT 59.512 40.909 4.18 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.703730 TGGACGGAGGGAGTAATATTTTT 57.296 39.130 0.00 0.00 0.00 1.94
22 23 5.045432 TGTTGGACGGAGGGAGTAATATTTT 60.045 40.000 0.00 0.00 0.00 1.82
23 24 4.472108 TGTTGGACGGAGGGAGTAATATTT 59.528 41.667 0.00 0.00 0.00 1.40
24 25 4.035112 TGTTGGACGGAGGGAGTAATATT 58.965 43.478 0.00 0.00 0.00 1.28
25 26 3.649843 TGTTGGACGGAGGGAGTAATAT 58.350 45.455 0.00 0.00 0.00 1.28
26 27 3.104519 TGTTGGACGGAGGGAGTAATA 57.895 47.619 0.00 0.00 0.00 0.98
27 28 1.946984 TGTTGGACGGAGGGAGTAAT 58.053 50.000 0.00 0.00 0.00 1.89
28 29 1.719529 TTGTTGGACGGAGGGAGTAA 58.280 50.000 0.00 0.00 0.00 2.24
29 30 1.553248 CATTGTTGGACGGAGGGAGTA 59.447 52.381 0.00 0.00 0.00 2.59
30 31 0.324943 CATTGTTGGACGGAGGGAGT 59.675 55.000 0.00 0.00 0.00 3.85
31 32 0.324943 ACATTGTTGGACGGAGGGAG 59.675 55.000 0.00 0.00 0.00 4.30
32 33 1.646912 TACATTGTTGGACGGAGGGA 58.353 50.000 0.00 0.00 0.00 4.20
33 34 2.027561 TCTTACATTGTTGGACGGAGGG 60.028 50.000 0.00 0.00 0.00 4.30
34 35 3.328382 TCTTACATTGTTGGACGGAGG 57.672 47.619 0.00 0.00 0.00 4.30
35 36 4.253685 ACATCTTACATTGTTGGACGGAG 58.746 43.478 0.00 0.00 0.00 4.63
36 37 4.280436 ACATCTTACATTGTTGGACGGA 57.720 40.909 0.00 0.00 0.00 4.69
37 38 5.371115 AAACATCTTACATTGTTGGACGG 57.629 39.130 0.00 0.00 36.26 4.79
38 39 6.345723 GCAAAAACATCTTACATTGTTGGACG 60.346 38.462 0.00 0.00 36.26 4.79
39 40 6.478344 TGCAAAAACATCTTACATTGTTGGAC 59.522 34.615 0.00 0.00 36.26 4.02
40 41 6.577103 TGCAAAAACATCTTACATTGTTGGA 58.423 32.000 0.00 0.00 36.26 3.53
41 42 6.841443 TGCAAAAACATCTTACATTGTTGG 57.159 33.333 0.00 0.00 36.26 3.77
42 43 6.847289 GCTTGCAAAAACATCTTACATTGTTG 59.153 34.615 0.00 0.00 36.26 3.33
43 44 6.762661 AGCTTGCAAAAACATCTTACATTGTT 59.237 30.769 0.00 0.00 37.66 2.83
44 45 6.282930 AGCTTGCAAAAACATCTTACATTGT 58.717 32.000 0.00 0.00 0.00 2.71
45 46 6.774354 AGCTTGCAAAAACATCTTACATTG 57.226 33.333 0.00 0.00 0.00 2.82
46 47 8.090214 ACATAGCTTGCAAAAACATCTTACATT 58.910 29.630 0.00 0.00 0.00 2.71
47 48 7.605449 ACATAGCTTGCAAAAACATCTTACAT 58.395 30.769 0.00 0.00 0.00 2.29
48 49 6.980593 ACATAGCTTGCAAAAACATCTTACA 58.019 32.000 0.00 0.00 0.00 2.41
49 50 7.873739 AACATAGCTTGCAAAAACATCTTAC 57.126 32.000 0.00 0.00 0.00 2.34
67 68 9.793252 ATAAGACATTTTTGCAAGCTAACATAG 57.207 29.630 0.00 0.00 0.00 2.23
69 70 9.793252 CTATAAGACATTTTTGCAAGCTAACAT 57.207 29.630 0.00 0.00 0.00 2.71
70 71 7.754924 GCTATAAGACATTTTTGCAAGCTAACA 59.245 33.333 0.00 0.00 0.00 2.41
71 72 7.754924 TGCTATAAGACATTTTTGCAAGCTAAC 59.245 33.333 0.00 0.00 28.76 2.34
72 73 7.825681 TGCTATAAGACATTTTTGCAAGCTAA 58.174 30.769 0.00 0.00 28.76 3.09
73 74 7.389803 TGCTATAAGACATTTTTGCAAGCTA 57.610 32.000 0.00 0.00 28.76 3.32
74 75 6.271488 TGCTATAAGACATTTTTGCAAGCT 57.729 33.333 0.00 0.00 28.76 3.74
75 76 6.019318 CCATGCTATAAGACATTTTTGCAAGC 60.019 38.462 0.00 0.00 33.56 4.01
76 77 6.477688 CCCATGCTATAAGACATTTTTGCAAG 59.522 38.462 0.00 0.00 33.56 4.01
77 78 6.154192 TCCCATGCTATAAGACATTTTTGCAA 59.846 34.615 0.00 0.00 33.56 4.08
78 79 5.655974 TCCCATGCTATAAGACATTTTTGCA 59.344 36.000 0.00 0.00 34.11 4.08
79 80 5.979517 GTCCCATGCTATAAGACATTTTTGC 59.020 40.000 0.00 0.00 0.00 3.68
80 81 6.201517 CGTCCCATGCTATAAGACATTTTTG 58.798 40.000 0.00 0.00 0.00 2.44
81 82 5.299279 CCGTCCCATGCTATAAGACATTTTT 59.701 40.000 0.00 0.00 0.00 1.94
82 83 4.821805 CCGTCCCATGCTATAAGACATTTT 59.178 41.667 0.00 0.00 0.00 1.82
83 84 4.102524 TCCGTCCCATGCTATAAGACATTT 59.897 41.667 0.00 0.00 0.00 2.32
84 85 3.646162 TCCGTCCCATGCTATAAGACATT 59.354 43.478 0.00 0.00 0.00 2.71
85 86 3.239449 TCCGTCCCATGCTATAAGACAT 58.761 45.455 0.00 0.00 0.00 3.06
86 87 2.673258 TCCGTCCCATGCTATAAGACA 58.327 47.619 0.00 0.00 0.00 3.41
87 88 3.555168 CCTTCCGTCCCATGCTATAAGAC 60.555 52.174 0.00 0.00 0.00 3.01
88 89 2.632996 CCTTCCGTCCCATGCTATAAGA 59.367 50.000 0.00 0.00 0.00 2.10
89 90 2.632996 TCCTTCCGTCCCATGCTATAAG 59.367 50.000 0.00 0.00 0.00 1.73
90 91 2.632996 CTCCTTCCGTCCCATGCTATAA 59.367 50.000 0.00 0.00 0.00 0.98
91 92 2.248248 CTCCTTCCGTCCCATGCTATA 58.752 52.381 0.00 0.00 0.00 1.31
92 93 1.051812 CTCCTTCCGTCCCATGCTAT 58.948 55.000 0.00 0.00 0.00 2.97
93 94 0.325296 ACTCCTTCCGTCCCATGCTA 60.325 55.000 0.00 0.00 0.00 3.49
94 95 0.325296 TACTCCTTCCGTCCCATGCT 60.325 55.000 0.00 0.00 0.00 3.79
95 96 0.105039 CTACTCCTTCCGTCCCATGC 59.895 60.000 0.00 0.00 0.00 4.06
96 97 1.409427 GACTACTCCTTCCGTCCCATG 59.591 57.143 0.00 0.00 0.00 3.66
97 98 1.688627 GGACTACTCCTTCCGTCCCAT 60.689 57.143 0.00 0.00 39.96 4.00
98 99 0.324091 GGACTACTCCTTCCGTCCCA 60.324 60.000 0.00 0.00 39.96 4.37
99 100 0.033306 AGGACTACTCCTTCCGTCCC 60.033 60.000 0.00 0.00 45.77 4.46
100 101 3.592546 AGGACTACTCCTTCCGTCC 57.407 57.895 0.00 0.00 45.77 4.79
109 110 9.674068 AAAAATCTTCAAATAGGAGGACTACTC 57.326 33.333 0.00 0.00 45.84 2.59
181 182 9.352191 CTCCTTTTCCTATCTCATCATCAAAAT 57.648 33.333 0.00 0.00 0.00 1.82
182 183 8.551440 TCTCCTTTTCCTATCTCATCATCAAAA 58.449 33.333 0.00 0.00 0.00 2.44
183 184 8.094284 TCTCCTTTTCCTATCTCATCATCAAA 57.906 34.615 0.00 0.00 0.00 2.69
184 185 7.566509 TCTCTCCTTTTCCTATCTCATCATCAA 59.433 37.037 0.00 0.00 0.00 2.57
185 186 7.071917 TCTCTCCTTTTCCTATCTCATCATCA 58.928 38.462 0.00 0.00 0.00 3.07
186 187 7.537596 TCTCTCCTTTTCCTATCTCATCATC 57.462 40.000 0.00 0.00 0.00 2.92
187 188 7.927683 TTCTCTCCTTTTCCTATCTCATCAT 57.072 36.000 0.00 0.00 0.00 2.45
188 189 7.739995 TTTCTCTCCTTTTCCTATCTCATCA 57.260 36.000 0.00 0.00 0.00 3.07
189 190 7.714813 CCTTTTCTCTCCTTTTCCTATCTCATC 59.285 40.741 0.00 0.00 0.00 2.92
190 191 7.366371 CCCTTTTCTCTCCTTTTCCTATCTCAT 60.366 40.741 0.00 0.00 0.00 2.90
191 192 6.069963 CCCTTTTCTCTCCTTTTCCTATCTCA 60.070 42.308 0.00 0.00 0.00 3.27
192 193 6.157123 TCCCTTTTCTCTCCTTTTCCTATCTC 59.843 42.308 0.00 0.00 0.00 2.75
193 194 6.032693 TCCCTTTTCTCTCCTTTTCCTATCT 58.967 40.000 0.00 0.00 0.00 1.98
194 195 6.069905 ACTCCCTTTTCTCTCCTTTTCCTATC 60.070 42.308 0.00 0.00 0.00 2.08
195 196 5.793237 ACTCCCTTTTCTCTCCTTTTCCTAT 59.207 40.000 0.00 0.00 0.00 2.57
196 197 5.013183 CACTCCCTTTTCTCTCCTTTTCCTA 59.987 44.000 0.00 0.00 0.00 2.94
197 198 3.984090 ACTCCCTTTTCTCTCCTTTTCCT 59.016 43.478 0.00 0.00 0.00 3.36
198 199 4.075682 CACTCCCTTTTCTCTCCTTTTCC 58.924 47.826 0.00 0.00 0.00 3.13
199 200 4.974399 TCACTCCCTTTTCTCTCCTTTTC 58.026 43.478 0.00 0.00 0.00 2.29
200 201 5.320277 CATCACTCCCTTTTCTCTCCTTTT 58.680 41.667 0.00 0.00 0.00 2.27
201 202 4.263683 CCATCACTCCCTTTTCTCTCCTTT 60.264 45.833 0.00 0.00 0.00 3.11
202 203 3.265479 CCATCACTCCCTTTTCTCTCCTT 59.735 47.826 0.00 0.00 0.00 3.36
203 204 2.843113 CCATCACTCCCTTTTCTCTCCT 59.157 50.000 0.00 0.00 0.00 3.69
204 205 2.840651 TCCATCACTCCCTTTTCTCTCC 59.159 50.000 0.00 0.00 0.00 3.71
205 206 3.369997 GGTCCATCACTCCCTTTTCTCTC 60.370 52.174 0.00 0.00 0.00 3.20
206 207 2.573915 GGTCCATCACTCCCTTTTCTCT 59.426 50.000 0.00 0.00 0.00 3.10
207 208 2.573915 AGGTCCATCACTCCCTTTTCTC 59.426 50.000 0.00 0.00 0.00 2.87
208 209 2.307098 CAGGTCCATCACTCCCTTTTCT 59.693 50.000 0.00 0.00 0.00 2.52
209 210 2.619074 CCAGGTCCATCACTCCCTTTTC 60.619 54.545 0.00 0.00 0.00 2.29
210 211 1.355720 CCAGGTCCATCACTCCCTTTT 59.644 52.381 0.00 0.00 0.00 2.27
211 212 0.995024 CCAGGTCCATCACTCCCTTT 59.005 55.000 0.00 0.00 0.00 3.11
212 213 0.916358 CCCAGGTCCATCACTCCCTT 60.916 60.000 0.00 0.00 0.00 3.95
213 214 1.307343 CCCAGGTCCATCACTCCCT 60.307 63.158 0.00 0.00 0.00 4.20
214 215 3.049080 GCCCAGGTCCATCACTCCC 62.049 68.421 0.00 0.00 0.00 4.30
215 216 2.592308 GCCCAGGTCCATCACTCC 59.408 66.667 0.00 0.00 0.00 3.85
216 217 0.691078 TAGGCCCAGGTCCATCACTC 60.691 60.000 0.00 0.00 0.00 3.51
217 218 0.692419 CTAGGCCCAGGTCCATCACT 60.692 60.000 0.00 0.00 0.00 3.41
218 219 0.983378 ACTAGGCCCAGGTCCATCAC 60.983 60.000 2.40 0.00 0.00 3.06
219 220 0.982852 CACTAGGCCCAGGTCCATCA 60.983 60.000 2.40 0.00 0.00 3.07
220 221 1.700042 CCACTAGGCCCAGGTCCATC 61.700 65.000 2.40 0.00 0.00 3.51
221 222 1.694169 CCACTAGGCCCAGGTCCAT 60.694 63.158 2.40 0.00 0.00 3.41
222 223 2.285368 CCACTAGGCCCAGGTCCA 60.285 66.667 2.40 0.00 0.00 4.02
223 224 2.285442 ACCACTAGGCCCAGGTCC 60.285 66.667 2.40 0.00 39.06 4.46
224 225 2.670148 CCACCACTAGGCCCAGGTC 61.670 68.421 2.40 0.00 39.06 3.85
225 226 2.610859 CCACCACTAGGCCCAGGT 60.611 66.667 2.40 1.34 39.06 4.00
226 227 3.411517 CCCACCACTAGGCCCAGG 61.412 72.222 2.40 0.64 39.06 4.45
227 228 4.115199 GCCCACCACTAGGCCCAG 62.115 72.222 0.00 0.00 43.76 4.45
233 234 4.778143 GTGCCGGCCCACCACTAG 62.778 72.222 26.77 0.00 34.57 2.57
237 238 4.612279 AAATGTGCCGGCCCACCA 62.612 61.111 26.77 15.72 34.85 4.17
238 239 2.779951 GAAAAATGTGCCGGCCCACC 62.780 60.000 26.77 9.88 34.85 4.61
239 240 1.374125 GAAAAATGTGCCGGCCCAC 60.374 57.895 26.77 17.62 36.28 4.61
240 241 2.578714 GGAAAAATGTGCCGGCCCA 61.579 57.895 26.77 21.41 0.00 5.36
241 242 1.826340 AAGGAAAAATGTGCCGGCCC 61.826 55.000 26.77 14.61 0.00 5.80
242 243 0.389817 GAAGGAAAAATGTGCCGGCC 60.390 55.000 26.77 16.24 0.00 6.13
243 244 0.603065 AGAAGGAAAAATGTGCCGGC 59.397 50.000 22.73 22.73 0.00 6.13
244 245 1.135689 CGAGAAGGAAAAATGTGCCGG 60.136 52.381 0.00 0.00 0.00 6.13
245 246 1.535462 ACGAGAAGGAAAAATGTGCCG 59.465 47.619 0.00 0.00 0.00 5.69
246 247 3.565516 GAACGAGAAGGAAAAATGTGCC 58.434 45.455 0.00 0.00 0.00 5.01
247 248 3.565516 GGAACGAGAAGGAAAAATGTGC 58.434 45.455 0.00 0.00 0.00 4.57
248 249 3.057526 GGGGAACGAGAAGGAAAAATGTG 60.058 47.826 0.00 0.00 0.00 3.21
249 250 3.154710 GGGGAACGAGAAGGAAAAATGT 58.845 45.455 0.00 0.00 0.00 2.71
250 251 3.421844 AGGGGAACGAGAAGGAAAAATG 58.578 45.455 0.00 0.00 0.00 2.32
251 252 3.808834 AGGGGAACGAGAAGGAAAAAT 57.191 42.857 0.00 0.00 0.00 1.82
252 253 3.117813 TCAAGGGGAACGAGAAGGAAAAA 60.118 43.478 0.00 0.00 0.00 1.94
253 254 2.440253 TCAAGGGGAACGAGAAGGAAAA 59.560 45.455 0.00 0.00 0.00 2.29
254 255 2.051692 TCAAGGGGAACGAGAAGGAAA 58.948 47.619 0.00 0.00 0.00 3.13
255 256 1.724545 TCAAGGGGAACGAGAAGGAA 58.275 50.000 0.00 0.00 0.00 3.36
256 257 1.724545 TTCAAGGGGAACGAGAAGGA 58.275 50.000 0.00 0.00 0.00 3.36
257 258 2.038557 TCTTTCAAGGGGAACGAGAAGG 59.961 50.000 0.00 0.00 34.56 3.46
258 259 3.402628 TCTTTCAAGGGGAACGAGAAG 57.597 47.619 0.00 0.00 34.56 2.85
259 260 3.389983 TCTTCTTTCAAGGGGAACGAGAA 59.610 43.478 0.00 0.00 35.48 2.87
260 261 2.969950 TCTTCTTTCAAGGGGAACGAGA 59.030 45.455 0.00 0.00 35.48 4.04
261 262 3.402628 TCTTCTTTCAAGGGGAACGAG 57.597 47.619 0.00 0.00 35.48 4.18
262 263 3.389983 TCTTCTTCTTTCAAGGGGAACGA 59.610 43.478 0.00 0.00 34.56 3.85
263 264 3.740115 TCTTCTTCTTTCAAGGGGAACG 58.260 45.455 0.00 0.00 34.56 3.95
264 265 4.520874 CCTTCTTCTTCTTTCAAGGGGAAC 59.479 45.833 0.00 0.00 34.56 3.62
265 266 4.447762 CCCTTCTTCTTCTTTCAAGGGGAA 60.448 45.833 7.11 0.00 46.81 3.97
266 267 3.074538 CCCTTCTTCTTCTTTCAAGGGGA 59.925 47.826 7.11 0.00 46.81 4.81
267 268 3.425659 CCCTTCTTCTTCTTTCAAGGGG 58.574 50.000 7.11 0.00 46.81 4.79
269 270 4.373156 TCCCCTTCTTCTTCTTTCAAGG 57.627 45.455 0.00 0.00 34.47 3.61
270 271 5.772169 ACAATCCCCTTCTTCTTCTTTCAAG 59.228 40.000 0.00 0.00 0.00 3.02
271 272 5.705400 ACAATCCCCTTCTTCTTCTTTCAA 58.295 37.500 0.00 0.00 0.00 2.69
272 273 5.073691 AGACAATCCCCTTCTTCTTCTTTCA 59.926 40.000 0.00 0.00 0.00 2.69
273 274 5.565509 AGACAATCCCCTTCTTCTTCTTTC 58.434 41.667 0.00 0.00 0.00 2.62
274 275 5.590976 AGACAATCCCCTTCTTCTTCTTT 57.409 39.130 0.00 0.00 0.00 2.52
275 276 6.704056 TTAGACAATCCCCTTCTTCTTCTT 57.296 37.500 0.00 0.00 0.00 2.52
276 277 6.704056 TTTAGACAATCCCCTTCTTCTTCT 57.296 37.500 0.00 0.00 0.00 2.85
277 278 7.761038 TTTTTAGACAATCCCCTTCTTCTTC 57.239 36.000 0.00 0.00 0.00 2.87
314 315 8.547481 TTTAGACAATTCCCCTTCTTCTTTTT 57.453 30.769 0.00 0.00 0.00 1.94
315 316 8.547481 TTTTAGACAATTCCCCTTCTTCTTTT 57.453 30.769 0.00 0.00 0.00 2.27
316 317 8.547481 TTTTTAGACAATTCCCCTTCTTCTTT 57.453 30.769 0.00 0.00 0.00 2.52
352 353 1.141053 ACGAGGAGGCAGTGTCTTTTT 59.859 47.619 0.00 0.00 0.00 1.94
353 354 0.759346 ACGAGGAGGCAGTGTCTTTT 59.241 50.000 0.00 0.00 0.00 2.27
354 355 0.318762 GACGAGGAGGCAGTGTCTTT 59.681 55.000 0.00 0.00 0.00 2.52
355 356 1.867919 CGACGAGGAGGCAGTGTCTT 61.868 60.000 0.00 0.00 0.00 3.01
356 357 2.336478 CGACGAGGAGGCAGTGTCT 61.336 63.158 0.00 0.00 0.00 3.41
357 358 2.179517 CGACGAGGAGGCAGTGTC 59.820 66.667 0.00 0.00 0.00 3.67
358 359 2.597805 ACGACGAGGAGGCAGTGT 60.598 61.111 0.00 0.00 0.00 3.55
359 360 1.025113 TAGACGACGAGGAGGCAGTG 61.025 60.000 0.00 0.00 0.00 3.66
360 361 1.025647 GTAGACGACGAGGAGGCAGT 61.026 60.000 0.00 0.00 0.00 4.40
361 362 1.025113 TGTAGACGACGAGGAGGCAG 61.025 60.000 0.00 0.00 0.00 4.85
362 363 0.607217 TTGTAGACGACGAGGAGGCA 60.607 55.000 0.00 0.00 0.00 4.75
363 364 0.739561 ATTGTAGACGACGAGGAGGC 59.260 55.000 0.00 0.00 0.00 4.70
364 365 1.065701 CCATTGTAGACGACGAGGAGG 59.934 57.143 0.00 0.00 0.00 4.30
365 366 1.743958 ACCATTGTAGACGACGAGGAG 59.256 52.381 0.00 0.00 0.00 3.69
369 370 1.441738 TCGACCATTGTAGACGACGA 58.558 50.000 0.00 0.00 0.00 4.20
386 387 1.149174 CTGTGGGATTGGGGGATCG 59.851 63.158 0.00 0.00 0.00 3.69
445 460 2.490328 TTTGCGGTGCTCTTTTGAAG 57.510 45.000 0.00 0.00 0.00 3.02
451 466 0.465460 TGGTCTTTTGCGGTGCTCTT 60.465 50.000 0.00 0.00 0.00 2.85
452 467 0.250901 ATGGTCTTTTGCGGTGCTCT 60.251 50.000 0.00 0.00 0.00 4.09
466 481 1.406860 GGAGGAGGAGGAGCATGGTC 61.407 65.000 16.65 16.65 0.00 4.02
467 482 1.383803 GGAGGAGGAGGAGCATGGT 60.384 63.158 0.00 0.00 0.00 3.55
477 498 1.288335 GGTACAGGAAGAGGAGGAGGA 59.712 57.143 0.00 0.00 0.00 3.71
557 887 1.543429 CGAAAAGTCCCAGCTTGGTCT 60.543 52.381 3.35 0.22 35.17 3.85
566 896 2.345991 CGGCCTCGAAAAGTCCCA 59.654 61.111 0.00 0.00 39.00 4.37
612 942 2.364186 TCTCCAGGATGCTCGCCA 60.364 61.111 0.00 0.00 31.97 5.69
625 972 0.391661 TCTGGATGCGCTTTGTCTCC 60.392 55.000 9.73 5.89 0.00 3.71
665 1012 2.450609 TACTGTTCTTGACTTCCGGC 57.549 50.000 0.00 0.00 0.00 6.13
839 1216 2.224621 CCAAATCTGACCACCACTGTCT 60.225 50.000 0.00 0.00 33.83 3.41
923 1306 1.744741 GGCCTCAGCTGAGCAAGAC 60.745 63.158 34.09 21.39 40.75 3.01
928 1311 0.465824 AATGATGGCCTCAGCTGAGC 60.466 55.000 34.09 27.56 40.75 4.26
1550 2007 0.744414 CCTCAATGGTCCGCACGATT 60.744 55.000 0.00 0.00 31.50 3.34
1592 2049 1.952990 TGCTGATGCTCAAAACGGAAA 59.047 42.857 0.00 0.00 40.48 3.13
1596 2053 1.001487 TGGTTGCTGATGCTCAAAACG 60.001 47.619 0.00 0.00 40.48 3.60
1754 2223 2.556189 CATTCCAACGATGGGAACAACA 59.444 45.455 12.28 0.00 46.53 3.33
1797 2266 6.159293 TGTCATTGTAGACAAGTTGAGCTAG 58.841 40.000 10.54 0.19 44.92 3.42
3069 7931 5.627182 ATGCTCATATCTTCAGGAAGTGT 57.373 39.130 8.75 2.77 39.38 3.55
3152 8014 3.305608 GGGCAGCCATATACTTCATTTGC 60.306 47.826 15.19 0.00 0.00 3.68
3341 8203 4.041049 CAGTCACGTTCTCTAGATGATGC 58.959 47.826 0.00 0.00 0.00 3.91
3437 8302 2.333926 TCATCAACAACGTCATCCGAC 58.666 47.619 0.00 0.00 40.70 4.79
3444 8309 4.627467 ACTGCTAGATTCATCAACAACGTC 59.373 41.667 0.00 0.00 0.00 4.34
3686 8578 2.075338 CTCTCAAAGCAGACAAGCTCC 58.925 52.381 0.00 0.00 45.89 4.70
3827 8725 4.781934 TCTCAATACGAGTGATCTGGAGA 58.218 43.478 0.00 0.00 42.88 3.71
4238 9160 5.688814 ATCCAGTCAGATTCTCACATTGA 57.311 39.130 0.00 0.00 0.00 2.57
4491 9416 4.407945 TGATGATGATGATGACACCTCTGT 59.592 41.667 0.00 0.00 0.00 3.41
4518 9443 2.216046 CCAACGTCCAGATGATGATGG 58.784 52.381 0.00 0.00 43.83 3.51
4533 9467 1.533625 TCCAAATTCTCTGCCCAACG 58.466 50.000 0.00 0.00 0.00 4.10
4534 9468 4.335400 TTTTCCAAATTCTCTGCCCAAC 57.665 40.909 0.00 0.00 0.00 3.77
4951 9914 8.994429 TTTACTTTGCTTCATTTTTCTGTCAA 57.006 26.923 0.00 0.00 0.00 3.18
5499 10494 0.740737 AAGAATACCGCCATGCTTGC 59.259 50.000 0.00 0.00 0.00 4.01
5748 10747 5.557891 AGCTACATCTTCAAAATCAGCAC 57.442 39.130 0.00 0.00 0.00 4.40
5765 10764 4.060038 TGCTAATCTACAGGCAAGCTAC 57.940 45.455 0.00 0.00 0.00 3.58
5766 10765 4.753516 TTGCTAATCTACAGGCAAGCTA 57.246 40.909 0.00 0.00 39.33 3.32
5767 10766 3.634397 TTGCTAATCTACAGGCAAGCT 57.366 42.857 0.00 0.00 39.33 3.74
5770 10769 3.774766 TCCTCTTGCTAATCTACAGGCAA 59.225 43.478 0.00 0.00 41.47 4.52
5771 10770 3.374764 TCCTCTTGCTAATCTACAGGCA 58.625 45.455 0.00 0.00 0.00 4.75
5772 10771 4.408182 TTCCTCTTGCTAATCTACAGGC 57.592 45.455 0.00 0.00 0.00 4.85
5773 10772 7.680588 GCATTTTTCCTCTTGCTAATCTACAGG 60.681 40.741 0.00 0.00 32.41 4.00
5774 10773 7.066766 AGCATTTTTCCTCTTGCTAATCTACAG 59.933 37.037 0.00 0.00 43.28 2.74
5775 10774 6.886459 AGCATTTTTCCTCTTGCTAATCTACA 59.114 34.615 0.00 0.00 43.28 2.74
5776 10775 7.148171 ACAGCATTTTTCCTCTTGCTAATCTAC 60.148 37.037 0.00 0.00 43.25 2.59
5777 10776 6.886459 ACAGCATTTTTCCTCTTGCTAATCTA 59.114 34.615 0.00 0.00 43.25 1.98
5778 10777 5.713861 ACAGCATTTTTCCTCTTGCTAATCT 59.286 36.000 0.00 0.00 43.25 2.40
5779 10778 5.803967 CACAGCATTTTTCCTCTTGCTAATC 59.196 40.000 0.00 0.00 43.25 1.75
5780 10779 5.477984 TCACAGCATTTTTCCTCTTGCTAAT 59.522 36.000 0.00 0.00 43.25 1.73
5781 10780 4.826733 TCACAGCATTTTTCCTCTTGCTAA 59.173 37.500 0.00 0.00 43.25 3.09
5782 10781 4.397420 TCACAGCATTTTTCCTCTTGCTA 58.603 39.130 0.00 0.00 43.25 3.49
5783 10782 3.225104 TCACAGCATTTTTCCTCTTGCT 58.775 40.909 0.00 0.00 45.86 3.91
5784 10783 3.648339 TCACAGCATTTTTCCTCTTGC 57.352 42.857 0.00 0.00 35.34 4.01
5785 10784 5.381174 TGATCACAGCATTTTTCCTCTTG 57.619 39.130 0.00 0.00 0.00 3.02
5786 10785 5.302568 TGTTGATCACAGCATTTTTCCTCTT 59.697 36.000 0.00 0.00 32.65 2.85
5787 10786 4.828939 TGTTGATCACAGCATTTTTCCTCT 59.171 37.500 0.00 0.00 32.65 3.69
5788 10787 5.125100 TGTTGATCACAGCATTTTTCCTC 57.875 39.130 0.00 0.00 32.65 3.71
5851 10852 1.067706 CACATGCATCGCCCAAAGAAA 60.068 47.619 0.00 0.00 0.00 2.52
5854 10855 1.140161 CCACATGCATCGCCCAAAG 59.860 57.895 0.00 0.00 0.00 2.77
5908 10909 1.203052 CCAGCAGCAGGTTAACATTGG 59.797 52.381 8.10 0.57 0.00 3.16
5920 10921 1.956477 GTTCTTTTCTTCCCAGCAGCA 59.044 47.619 0.00 0.00 0.00 4.41
5936 10937 6.205658 GCCTAATTCTTCAGTGAACAAGTTCT 59.794 38.462 13.49 0.00 40.14 3.01
5937 10938 6.205658 AGCCTAATTCTTCAGTGAACAAGTTC 59.794 38.462 0.08 6.01 39.91 3.01
5939 10940 5.471456 CAGCCTAATTCTTCAGTGAACAAGT 59.529 40.000 0.08 0.00 0.00 3.16
5940 10941 5.618640 GCAGCCTAATTCTTCAGTGAACAAG 60.619 44.000 0.08 0.00 0.00 3.16
5961 11005 7.869800 AGAAACTGAAGAAAATAACAGAGCAG 58.130 34.615 0.00 0.00 34.88 4.24
5963 11007 7.114106 GCAAGAAACTGAAGAAAATAACAGAGC 59.886 37.037 0.00 0.00 34.88 4.09
5978 11022 3.620488 AGGAAACACTGCAAGAAACTGA 58.380 40.909 0.00 0.00 37.43 3.41
6039 11092 1.635844 CGCATAGTAACAGGCGTCAA 58.364 50.000 0.00 0.00 44.11 3.18
6061 11114 4.096833 CCGCTCCATTTTCATTGAGAATGA 59.903 41.667 24.17 13.22 45.68 2.57
6063 11116 3.382546 CCCGCTCCATTTTCATTGAGAAT 59.617 43.478 0.00 0.00 35.83 2.40
6066 11119 1.406539 CCCCGCTCCATTTTCATTGAG 59.593 52.381 0.00 0.00 0.00 3.02
6101 11154 2.309764 ATCGATCAAAAGGCGCACGC 62.310 55.000 10.83 6.46 41.06 5.34
6102 11155 0.096976 AATCGATCAAAAGGCGCACG 59.903 50.000 10.83 1.55 0.00 5.34
6103 11156 2.262572 AAATCGATCAAAAGGCGCAC 57.737 45.000 10.83 0.00 0.00 5.34
6104 11157 2.487762 AGAAAATCGATCAAAAGGCGCA 59.512 40.909 10.83 0.00 0.00 6.09
6105 11158 3.136808 AGAAAATCGATCAAAAGGCGC 57.863 42.857 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.