Multiple sequence alignment - TraesCS7B01G451600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G451600 chr7B 100.000 3617 0 0 1 3617 713288127 713291743 0.000000e+00 6680.0
1 TraesCS7B01G451600 chr7B 90.955 398 36 0 1201 1598 86005807 86006204 1.480000e-148 536.0
2 TraesCS7B01G451600 chr7B 90.704 398 37 0 1201 1598 289702397 289702794 6.880000e-147 531.0
3 TraesCS7B01G451600 chr7A 92.649 3020 142 27 655 3617 712421870 712424866 0.000000e+00 4274.0
4 TraesCS7B01G451600 chr7A 87.273 660 53 15 17 655 712421166 712421815 0.000000e+00 725.0
5 TraesCS7B01G451600 chr7A 80.833 240 27 14 3191 3429 594424693 594424472 1.730000e-38 171.0
6 TraesCS7B01G451600 chr7A 81.818 110 10 2 2744 2853 594424653 594424554 2.310000e-12 84.2
7 TraesCS7B01G451600 chr7A 82.292 96 7 5 2741 2836 712424474 712424559 1.390000e-09 75.0
8 TraesCS7B01G451600 chr7D 93.084 2863 131 28 653 3473 618873547 618876384 0.000000e+00 4128.0
9 TraesCS7B01G451600 chr7D 90.549 656 46 8 10 655 618872845 618873494 0.000000e+00 854.0
10 TraesCS7B01G451600 chr7D 80.833 240 24 16 3191 3429 223504686 223504468 6.210000e-38 169.0
11 TraesCS7B01G451600 chr7D 91.667 120 7 3 3495 3611 618876444 618876563 2.890000e-36 163.0
12 TraesCS7B01G451600 chr7D 87.500 136 14 2 3473 3605 223504401 223504266 1.740000e-33 154.0
13 TraesCS7B01G451600 chr7D 81.667 180 21 3 2741 2918 618876150 618876319 4.870000e-29 139.0
14 TraesCS7B01G451600 chr7D 82.727 110 7 4 2744 2853 223504646 223504549 1.790000e-13 87.9
15 TraesCS7B01G451600 chr4B 95.511 401 18 0 1201 1601 330524462 330524062 3.040000e-180 641.0
16 TraesCS7B01G451600 chr4B 92.269 401 31 0 1201 1601 528807636 528807236 1.460000e-158 569.0
17 TraesCS7B01G451600 chr5B 93.358 271 18 0 1201 1471 534150368 534150098 5.630000e-108 401.0
18 TraesCS7B01G451600 chr4A 76.802 444 55 26 3191 3605 535953745 535954169 4.730000e-49 206.0
19 TraesCS7B01G451600 chr4A 82.727 110 9 2 2744 2853 535953785 535953884 4.970000e-14 89.8
20 TraesCS7B01G451600 chr1B 89.262 149 13 2 3470 3617 502324291 502324437 2.220000e-42 183.0
21 TraesCS7B01G451600 chr1B 82.243 107 9 4 2743 2849 502324032 502324128 2.310000e-12 84.2
22 TraesCS7B01G451600 chrUn 81.667 240 25 13 3191 3429 208645027 208644806 7.980000e-42 182.0
23 TraesCS7B01G451600 chr6A 81.667 240 25 13 3191 3429 110220966 110221187 7.980000e-42 182.0
24 TraesCS7B01G451600 chr6A 88.288 111 12 1 3496 3605 393228389 393228279 8.150000e-27 132.0
25 TraesCS7B01G451600 chr6B 81.818 110 10 6 2744 2853 31284335 31284434 2.310000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G451600 chr7B 713288127 713291743 3616 False 6680.000000 6680 100.000000 1 3617 1 chr7B.!!$F3 3616
1 TraesCS7B01G451600 chr7A 712421166 712424866 3700 False 1691.333333 4274 87.404667 17 3617 3 chr7A.!!$F1 3600
2 TraesCS7B01G451600 chr7D 618872845 618876563 3718 False 1321.000000 4128 89.241750 10 3611 4 chr7D.!!$F1 3601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1049 0.042731 TCCTCTCCATCTCCCCGTTT 59.957 55.0 0.0 0.0 0.0 3.6 F
976 1090 0.471211 TTCTCTCCCCGTTCACCACT 60.471 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2321 0.937304 GTCGTGCTCTGCAAACTTCA 59.063 50.0 0.0 0.0 41.47 3.02 R
2896 3019 1.186200 TTCTAGCTCTGGCACGATGT 58.814 50.0 0.0 0.0 41.70 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.147817 ACCAACCAAAGATTGCCCTCT 59.852 47.619 0.00 0.00 0.00 3.69
80 81 5.123979 AGCATCACTATCGTATCTATTCGCA 59.876 40.000 0.00 0.00 0.00 5.10
91 92 6.024664 CGTATCTATTCGCACTTCCTCTATG 58.975 44.000 0.00 0.00 0.00 2.23
110 111 1.274167 TGCCGACGAGTACTTGGAAAT 59.726 47.619 14.75 0.00 0.00 2.17
112 113 3.131577 TGCCGACGAGTACTTGGAAATAT 59.868 43.478 14.75 0.00 0.00 1.28
117 118 5.618798 CGACGAGTACTTGGAAATATACGAC 59.381 44.000 14.75 1.10 0.00 4.34
137 138 4.864806 CGACAAGCAAAATAGTCTAGCTCA 59.135 41.667 0.00 0.00 33.83 4.26
139 140 6.042638 ACAAGCAAAATAGTCTAGCTCAGA 57.957 37.500 0.00 0.00 33.83 3.27
144 145 6.760770 AGCAAAATAGTCTAGCTCAGATGAAC 59.239 38.462 0.00 0.00 35.17 3.18
152 153 8.072321 AGTCTAGCTCAGATGAACTCATTTTA 57.928 34.615 0.00 0.00 36.57 1.52
206 207 7.224297 CCACATGTATAGCCTACTTGGTATTT 58.776 38.462 0.00 0.00 38.35 1.40
209 210 7.719633 ACATGTATAGCCTACTTGGTATTTTGG 59.280 37.037 0.00 0.00 38.35 3.28
210 211 7.440505 TGTATAGCCTACTTGGTATTTTGGA 57.559 36.000 0.00 0.00 38.35 3.53
211 212 8.041143 TGTATAGCCTACTTGGTATTTTGGAT 57.959 34.615 0.00 0.00 38.35 3.41
212 213 9.161572 TGTATAGCCTACTTGGTATTTTGGATA 57.838 33.333 0.00 0.00 38.35 2.59
321 322 9.566432 TGACAAAACCCAAAATAATGCTAAAAT 57.434 25.926 0.00 0.00 0.00 1.82
466 478 7.370383 TCAGAAGCACAAATTCAACTATTTCC 58.630 34.615 0.00 0.00 0.00 3.13
573 592 3.443037 CCGCACACAAAAATCAGTTTGA 58.557 40.909 4.76 0.00 40.29 2.69
637 657 7.118390 AGTCTCACTTTCAATCCATAGTTTTCG 59.882 37.037 0.00 0.00 0.00 3.46
684 759 2.546368 TCCACGCACAGTTTCACAATAC 59.454 45.455 0.00 0.00 0.00 1.89
695 772 6.876257 ACAGTTTCACAATACTTTTGCCAAAA 59.124 30.769 2.15 2.15 0.00 2.44
802 883 6.900568 TGAAGCATTTTCGTTGTTCATTTT 57.099 29.167 0.00 0.00 0.00 1.82
804 885 5.081888 AGCATTTTCGTTGTTCATTTTGC 57.918 34.783 0.00 0.00 0.00 3.68
805 886 4.810491 AGCATTTTCGTTGTTCATTTTGCT 59.190 33.333 0.00 0.00 32.27 3.91
806 887 5.050837 AGCATTTTCGTTGTTCATTTTGCTC 60.051 36.000 0.00 0.00 31.54 4.26
814 911 5.218139 GTTGTTCATTTTGCTCAGAGGAAG 58.782 41.667 4.36 0.00 0.00 3.46
821 921 3.041469 GCTCAGAGGAAGCCTGGGG 62.041 68.421 0.00 0.00 31.76 4.96
825 925 1.614824 AGAGGAAGCCTGGGGTCAG 60.615 63.158 0.00 0.00 40.59 3.51
831 942 2.359975 GCCTGGGGTCAGAAACGG 60.360 66.667 0.00 0.00 43.49 4.44
840 951 2.501261 GGTCAGAAACGGTAAGGCTTT 58.499 47.619 4.45 0.00 0.00 3.51
858 969 3.997681 GCTTTTATAGGGCCGAGATTCTC 59.002 47.826 3.43 3.43 0.00 2.87
878 989 2.069273 CGAAGACGAACATCAAAGCCT 58.931 47.619 0.00 0.00 42.66 4.58
879 990 2.480419 CGAAGACGAACATCAAAGCCTT 59.520 45.455 0.00 0.00 42.66 4.35
937 1048 0.397816 CTCCTCTCCATCTCCCCGTT 60.398 60.000 0.00 0.00 0.00 4.44
938 1049 0.042731 TCCTCTCCATCTCCCCGTTT 59.957 55.000 0.00 0.00 0.00 3.60
939 1050 1.289830 TCCTCTCCATCTCCCCGTTTA 59.710 52.381 0.00 0.00 0.00 2.01
958 1072 1.001641 CCTGCAGCTGCTAGGGTTT 60.002 57.895 36.61 0.00 42.66 3.27
964 1078 1.134551 CAGCTGCTAGGGTTTCTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
967 1081 0.976073 TGCTAGGGTTTCTCTCCCCG 60.976 60.000 0.00 0.00 46.17 5.73
968 1082 0.976590 GCTAGGGTTTCTCTCCCCGT 60.977 60.000 0.00 0.00 46.17 5.28
969 1083 1.569653 CTAGGGTTTCTCTCCCCGTT 58.430 55.000 0.00 0.00 46.17 4.44
971 1085 0.473117 AGGGTTTCTCTCCCCGTTCA 60.473 55.000 0.00 0.00 46.17 3.18
976 1090 0.471211 TTCTCTCCCCGTTCACCACT 60.471 55.000 0.00 0.00 0.00 4.00
977 1091 0.471211 TCTCTCCCCGTTCACCACTT 60.471 55.000 0.00 0.00 0.00 3.16
1065 1188 4.458829 TCGCTCCTCCCGTCCCAT 62.459 66.667 0.00 0.00 0.00 4.00
1072 1195 2.933287 TCCCGTCCCATGGCAACT 60.933 61.111 6.09 0.00 37.61 3.16
1764 1887 3.313526 CGGTCAAGATTTGGGATGTGATC 59.686 47.826 0.00 0.00 0.00 2.92
1818 1941 1.590238 CATGTCAAGACGATCTTCGCC 59.410 52.381 0.00 0.00 45.12 5.54
1985 2108 3.660111 GTGTGGGACGGTGCTTGC 61.660 66.667 0.00 0.00 0.00 4.01
2106 2229 1.604593 GCCCAAGCCAGAGAAGCAA 60.605 57.895 0.00 0.00 0.00 3.91
2198 2321 1.283321 GATCTCAAGGCCCAAGAAGGT 59.717 52.381 0.00 0.00 34.66 3.50
2205 2328 1.217942 AGGCCCAAGAAGGTGAAGTTT 59.782 47.619 0.00 0.00 34.66 2.66
2280 2403 3.026694 AGCATTAGCCAAGAACAATCCC 58.973 45.455 0.00 0.00 43.56 3.85
2397 2520 2.358615 TTCCTGCATCGCAACGCT 60.359 55.556 0.00 0.00 38.41 5.07
2478 2601 3.444703 GCGGAGGATATCATAAGCGAT 57.555 47.619 4.83 0.00 0.00 4.58
2527 2650 1.065709 GGAACCTTAAGCGGATGGTCA 60.066 52.381 0.00 0.00 31.64 4.02
2678 2801 8.765219 GTGTATGTTCATTTACGCTTCATAGAT 58.235 33.333 0.00 0.00 0.00 1.98
2747 2870 5.596772 AGATCCTAGTGCCTAGAGACTTTTC 59.403 44.000 9.94 2.92 36.26 2.29
2772 2895 8.971073 TCATCAGATTGTTCTTCTAGTATGTCA 58.029 33.333 0.00 0.00 0.00 3.58
2894 3017 2.840038 TGAGACCATGTATCCTGTGCTT 59.160 45.455 0.00 0.00 0.00 3.91
2896 3019 4.469586 TGAGACCATGTATCCTGTGCTTAA 59.530 41.667 0.00 0.00 0.00 1.85
2919 3042 0.531532 CGTGCCAGAGCTAGAATGGG 60.532 60.000 9.54 0.00 40.80 4.00
2932 3055 4.035675 GCTAGAATGGGTACATTTGTCTGC 59.964 45.833 0.00 0.00 46.89 4.26
3011 3134 3.696051 TGCAGGCCTGTCTTGATATTTTC 59.304 43.478 32.81 12.47 0.00 2.29
3057 3180 1.197721 CGAGTTCTGGACAATGGCAAC 59.802 52.381 0.00 0.00 0.00 4.17
3064 3187 0.893727 GGACAATGGCAACCCGTCTT 60.894 55.000 0.00 0.00 0.00 3.01
3074 3197 2.494059 CAACCCGTCTTCTGTCACAAT 58.506 47.619 0.00 0.00 0.00 2.71
3085 3208 6.636850 GTCTTCTGTCACAATAAAATTTGCGT 59.363 34.615 0.00 0.00 0.00 5.24
3104 3227 2.548057 CGTAAGTTGGCTGCTTCTTTCA 59.452 45.455 0.00 0.00 0.00 2.69
3118 3241 5.221925 TGCTTCTTTCACACTCCTTAATCCT 60.222 40.000 0.00 0.00 0.00 3.24
3150 3273 3.754965 TGCTACTTTCACCTTGCATCTT 58.245 40.909 0.00 0.00 0.00 2.40
3177 3300 8.994170 GCTATCAGGTATTTTGATTCTTACCTC 58.006 37.037 0.00 0.00 41.91 3.85
3198 3321 8.655935 ACCTCTTTCAATCCTAAATTCAATGT 57.344 30.769 0.00 0.00 0.00 2.71
3200 3323 9.362539 CCTCTTTCAATCCTAAATTCAATGTTG 57.637 33.333 0.00 0.00 0.00 3.33
3224 3347 5.789643 GTGATTACCACATGGCCATAATT 57.210 39.130 20.30 2.44 45.03 1.40
3251 3374 8.489990 TGACTTTTGATCAGATCATTTCTCTC 57.510 34.615 14.11 5.43 39.39 3.20
3292 3415 2.684001 TCAGTTCAAGTGACGTGGTT 57.316 45.000 0.00 0.00 0.00 3.67
3363 3501 7.177041 TCAGTTTCTAAGTTTCTAGAGACCCTC 59.823 40.741 9.69 0.00 34.89 4.30
3373 3511 1.915769 GAGACCCTCTGGCCTGTGT 60.916 63.158 3.32 3.02 33.59 3.72
3375 3513 1.003233 GACCCTCTGGCCTGTGTTC 60.003 63.158 3.32 0.00 33.59 3.18
3376 3514 1.462238 ACCCTCTGGCCTGTGTTCT 60.462 57.895 3.32 0.00 33.59 3.01
3607 3792 3.997021 AGAACTGCTGGTTTTATCGACAG 59.003 43.478 0.00 0.00 38.41 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.755650 GGTTGATTATCCGACAGCGAT 58.244 47.619 0.00 0.00 40.82 4.58
1 2 2.218953 GGTTGATTATCCGACAGCGA 57.781 50.000 0.00 0.00 40.82 4.93
8 9 1.937899 GGTTGGTCGGTTGATTATCCG 59.062 52.381 0.67 0.67 46.93 4.18
26 27 2.967270 GCAGAGGGCAATCTTTGGT 58.033 52.632 0.00 0.00 43.97 3.67
67 68 4.491234 AGAGGAAGTGCGAATAGATACG 57.509 45.455 0.00 0.00 0.00 3.06
80 81 1.025812 CTCGTCGGCATAGAGGAAGT 58.974 55.000 0.00 0.00 35.06 3.01
91 92 2.005971 ATTTCCAAGTACTCGTCGGC 57.994 50.000 0.00 0.00 0.00 5.54
110 111 7.713750 AGCTAGACTATTTTGCTTGTCGTATA 58.286 34.615 0.00 0.00 34.92 1.47
112 113 5.962433 AGCTAGACTATTTTGCTTGTCGTA 58.038 37.500 0.00 0.00 34.92 3.43
117 118 6.760298 TCATCTGAGCTAGACTATTTTGCTTG 59.240 38.462 0.00 0.00 38.49 4.01
551 570 2.507339 AACTGATTTTTGTGTGCGGG 57.493 45.000 0.00 0.00 0.00 6.13
611 630 7.118390 CGAAAACTATGGATTGAAAGTGAGACT 59.882 37.037 0.00 0.00 0.00 3.24
612 631 7.237173 CGAAAACTATGGATTGAAAGTGAGAC 58.763 38.462 0.00 0.00 0.00 3.36
613 632 6.128282 GCGAAAACTATGGATTGAAAGTGAGA 60.128 38.462 0.00 0.00 0.00 3.27
637 657 6.325849 ACTTTTTAATTGAAACGTGTGTGC 57.674 33.333 4.34 0.00 0.00 4.57
798 879 2.444421 CAGGCTTCCTCTGAGCAAAAT 58.556 47.619 0.00 0.00 41.89 1.82
802 883 2.296365 CCCAGGCTTCCTCTGAGCA 61.296 63.158 0.00 0.00 41.89 4.26
804 885 1.614824 ACCCCAGGCTTCCTCTGAG 60.615 63.158 0.00 0.00 34.36 3.35
805 886 1.613630 GACCCCAGGCTTCCTCTGA 60.614 63.158 0.00 0.00 34.36 3.27
806 887 1.908340 CTGACCCCAGGCTTCCTCTG 61.908 65.000 0.00 0.00 36.77 3.35
814 911 1.833787 TACCGTTTCTGACCCCAGGC 61.834 60.000 0.00 0.00 40.76 4.85
821 921 5.874895 ATAAAAGCCTTACCGTTTCTGAC 57.125 39.130 0.00 0.00 0.00 3.51
825 925 4.036027 GCCCTATAAAAGCCTTACCGTTTC 59.964 45.833 0.00 0.00 0.00 2.78
831 942 3.070590 TCTCGGCCCTATAAAAGCCTTAC 59.929 47.826 0.00 0.00 44.84 2.34
852 963 5.722592 GCTTTGATGTTCGTCTTCGAGAATC 60.723 44.000 0.00 0.00 46.81 2.52
858 969 2.069273 AGGCTTTGATGTTCGTCTTCG 58.931 47.619 0.00 0.00 38.55 3.79
937 1048 0.909610 ACCCTAGCAGCTGCAGGTAA 60.910 55.000 34.92 20.23 45.16 2.85
938 1049 0.909610 AACCCTAGCAGCTGCAGGTA 60.910 55.000 34.92 23.53 45.16 3.08
939 1050 1.783250 AAACCCTAGCAGCTGCAGGT 61.783 55.000 34.92 33.23 45.16 4.00
958 1072 0.471211 AAGTGGTGAACGGGGAGAGA 60.471 55.000 0.00 0.00 0.00 3.10
964 1078 3.047877 GGCGAAGTGGTGAACGGG 61.048 66.667 0.00 0.00 0.00 5.28
967 1081 3.723348 GGCGGCGAAGTGGTGAAC 61.723 66.667 12.98 0.00 0.00 3.18
1254 1377 3.706373 CAGACGGTCACCCTGGGG 61.706 72.222 18.88 7.87 42.03 4.96
1259 1382 2.358737 CCTTGCAGACGGTCACCC 60.359 66.667 11.27 0.00 0.00 4.61
1656 1779 0.955919 CGTGGGAGAAGGACAAAGCC 60.956 60.000 0.00 0.00 0.00 4.35
1818 1941 3.905678 ATCTTCCCGAGCGCGAGG 61.906 66.667 12.10 15.79 40.82 4.63
1985 2108 1.675641 CCCTTTGAAGACCCGGCAG 60.676 63.158 0.00 0.00 0.00 4.85
2198 2321 0.937304 GTCGTGCTCTGCAAACTTCA 59.063 50.000 0.00 0.00 41.47 3.02
2205 2328 1.957695 CAGCTTGTCGTGCTCTGCA 60.958 57.895 0.00 0.00 38.92 4.41
2397 2520 1.481901 TTGCGTACCTTGGCAGGGTA 61.482 55.000 23.16 23.16 46.01 3.69
2406 2529 1.515521 GCAACAGCCTTGCGTACCTT 61.516 55.000 1.19 0.00 35.58 3.50
2527 2650 5.604231 TGTGCTGTATCTTAATCTCCTCCAT 59.396 40.000 0.00 0.00 0.00 3.41
2678 2801 1.689984 TCACCAACAAGCAAGCATGA 58.310 45.000 4.12 0.00 0.00 3.07
2747 2870 9.029243 GTGACATACTAGAAGAACAATCTGATG 57.971 37.037 0.00 0.00 35.59 3.07
2782 2905 7.765819 TCACTTGAATCGATACTGAACATCATT 59.234 33.333 0.00 0.00 0.00 2.57
2863 2986 3.814504 ACATGGTCTCACCTTGGAAAT 57.185 42.857 11.97 0.00 44.91 2.17
2894 3017 2.375146 TCTAGCTCTGGCACGATGTTA 58.625 47.619 0.00 0.00 41.70 2.41
2896 3019 1.186200 TTCTAGCTCTGGCACGATGT 58.814 50.000 0.00 0.00 41.70 3.06
2919 3042 9.282247 CTATCAATTTCTTGCAGACAAATGTAC 57.718 33.333 0.00 0.00 34.74 2.90
2932 3055 7.652909 TGGAACAGCAAAACTATCAATTTCTTG 59.347 33.333 0.00 0.00 0.00 3.02
3011 3134 3.233578 ACGATGCATTGCAAAGTTTACG 58.766 40.909 16.46 13.75 43.62 3.18
3057 3180 5.880054 ATTTTATTGTGACAGAAGACGGG 57.120 39.130 0.00 0.00 0.00 5.28
3064 3187 7.644490 ACTTACGCAAATTTTATTGTGACAGA 58.356 30.769 7.50 0.00 42.08 3.41
3074 3197 3.984633 GCAGCCAACTTACGCAAATTTTA 59.015 39.130 0.00 0.00 0.00 1.52
3085 3208 3.315191 GTGTGAAAGAAGCAGCCAACTTA 59.685 43.478 0.00 0.00 0.00 2.24
3104 3227 5.077564 GTTTTGGGAAGGATTAAGGAGTGT 58.922 41.667 0.00 0.00 0.00 3.55
3118 3241 4.038642 GGTGAAAGTAGCATGTTTTGGGAA 59.961 41.667 0.00 0.00 0.00 3.97
3150 3273 8.494433 AGGTAAGAATCAAAATACCTGATAGCA 58.506 33.333 2.69 0.00 44.88 3.49
3177 3300 9.480053 ACACAACATTGAATTTAGGATTGAAAG 57.520 29.630 0.00 0.00 0.00 2.62
3286 3409 2.668279 GCACAAGGAATAAGCAACCACG 60.668 50.000 0.00 0.00 0.00 4.94
3292 3415 4.292186 AGAGAAGCACAAGGAATAAGCA 57.708 40.909 0.00 0.00 0.00 3.91
3363 3501 2.263741 GGCACAGAACACAGGCCAG 61.264 63.158 5.01 0.00 44.01 4.85
3376 3514 2.224744 TGACCATTTTAGCTCTGGCACA 60.225 45.455 0.00 0.00 41.70 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.