Multiple sequence alignment - TraesCS7B01G451200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G451200 chr7B 100.000 4019 0 0 1 4019 713098503 713102521 0.000000e+00 7422
1 TraesCS7B01G451200 chr7B 84.080 402 52 11 993 1389 679684119 679683725 1.050000e-100 377
2 TraesCS7B01G451200 chr7B 74.603 378 67 23 2607 2971 69993994 69994355 5.420000e-29 139
3 TraesCS7B01G451200 chr7A 93.849 3772 133 42 1 3711 712306115 712309848 0.000000e+00 5589
4 TraesCS7B01G451200 chr7A 90.939 618 54 2 1 617 144166620 144167236 0.000000e+00 830
5 TraesCS7B01G451200 chr7A 85.463 681 72 19 993 1666 692056505 692055845 0.000000e+00 684
6 TraesCS7B01G451200 chr7A 78.298 705 105 28 1001 1667 116018884 116019578 1.040000e-110 411
7 TraesCS7B01G451200 chr7A 79.604 505 84 13 1165 1666 692130740 692130252 1.070000e-90 344
8 TraesCS7B01G451200 chr7A 88.696 230 17 3 856 1076 712253998 712254227 5.120000e-69 272
9 TraesCS7B01G451200 chr7D 95.660 3387 74 18 1 3351 618678614 618681963 0.000000e+00 5373
10 TraesCS7B01G451200 chr7D 78.156 705 106 34 1001 1667 110890678 110891372 4.840000e-109 405
11 TraesCS7B01G451200 chr7D 80.517 503 83 14 1165 1666 599884613 599884125 4.910000e-99 372
12 TraesCS7B01G451200 chr7D 88.841 233 14 4 856 1076 618646885 618647117 3.960000e-70 276
13 TraesCS7B01G451200 chr3D 90.865 613 56 0 1 613 85594292 85594904 0.000000e+00 822
14 TraesCS7B01G451200 chr3D 85.417 288 39 3 3733 4017 173584040 173584327 3.040000e-76 296
15 TraesCS7B01G451200 chr1A 90.302 629 59 2 1 629 491375924 491376550 0.000000e+00 822
16 TraesCS7B01G451200 chr1A 85.458 502 55 11 1164 1665 541895505 541895022 1.290000e-139 507
17 TraesCS7B01G451200 chr3B 90.984 610 53 2 1 610 12765678 12765071 0.000000e+00 821
18 TraesCS7B01G451200 chr3B 90.747 616 56 1 1 616 27514193 27513579 0.000000e+00 821
19 TraesCS7B01G451200 chr2A 90.717 614 57 0 1 614 138922990 138922377 0.000000e+00 819
20 TraesCS7B01G451200 chr2A 81.836 523 71 18 1165 1667 20365664 20366182 6.210000e-113 418
21 TraesCS7B01G451200 chr2A 87.500 104 11 2 1001 1104 17300138 17300239 7.060000e-23 119
22 TraesCS7B01G451200 chr6A 90.820 610 56 0 1 610 590371500 590370891 0.000000e+00 817
23 TraesCS7B01G451200 chr6A 82.927 287 45 4 3733 4017 352414900 352414616 5.150000e-64 255
24 TraesCS7B01G451200 chr1B 83.161 677 80 23 995 1665 608996442 608995794 4.470000e-164 588
25 TraesCS7B01G451200 chr1D 84.980 506 54 13 1164 1665 445642521 445642034 1.000000e-135 494
26 TraesCS7B01G451200 chrUn 81.961 510 69 15 1176 1667 266170960 266170456 1.040000e-110 411
27 TraesCS7B01G451200 chrUn 81.559 526 70 21 1165 1667 16657740 16658261 3.740000e-110 409
28 TraesCS7B01G451200 chrUn 78.059 711 106 43 1001 1667 233477197 233476493 1.740000e-108 403
29 TraesCS7B01G451200 chrUn 88.542 96 10 1 1001 1096 266171183 266171089 9.130000e-22 115
30 TraesCS7B01G451200 chr2D 81.961 510 69 15 1176 1667 15228968 15229472 1.040000e-110 411
31 TraesCS7B01G451200 chr2D 87.662 308 35 3 3712 4017 384889339 384889645 4.940000e-94 355
32 TraesCS7B01G451200 chr2D 83.721 172 27 1 2607 2778 19655342 19655172 1.160000e-35 161
33 TraesCS7B01G451200 chr2D 88.542 96 10 1 1001 1096 15228745 15228839 9.130000e-22 115
34 TraesCS7B01G451200 chr2D 85.321 109 14 2 1001 1108 19849273 19849166 1.180000e-20 111
35 TraesCS7B01G451200 chr2B 87.702 309 34 4 3712 4017 455596883 455597190 1.370000e-94 357
36 TraesCS7B01G451200 chr5D 78.819 288 57 4 3733 4017 495377083 495377369 1.470000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G451200 chr7B 713098503 713102521 4018 False 7422 7422 100.0000 1 4019 1 chr7B.!!$F2 4018
1 TraesCS7B01G451200 chr7A 712306115 712309848 3733 False 5589 5589 93.8490 1 3711 1 chr7A.!!$F4 3710
2 TraesCS7B01G451200 chr7A 144166620 144167236 616 False 830 830 90.9390 1 617 1 chr7A.!!$F2 616
3 TraesCS7B01G451200 chr7A 692055845 692056505 660 True 684 684 85.4630 993 1666 1 chr7A.!!$R1 673
4 TraesCS7B01G451200 chr7A 116018884 116019578 694 False 411 411 78.2980 1001 1667 1 chr7A.!!$F1 666
5 TraesCS7B01G451200 chr7D 618678614 618681963 3349 False 5373 5373 95.6600 1 3351 1 chr7D.!!$F3 3350
6 TraesCS7B01G451200 chr7D 110890678 110891372 694 False 405 405 78.1560 1001 1667 1 chr7D.!!$F1 666
7 TraesCS7B01G451200 chr3D 85594292 85594904 612 False 822 822 90.8650 1 613 1 chr3D.!!$F1 612
8 TraesCS7B01G451200 chr1A 491375924 491376550 626 False 822 822 90.3020 1 629 1 chr1A.!!$F1 628
9 TraesCS7B01G451200 chr3B 12765071 12765678 607 True 821 821 90.9840 1 610 1 chr3B.!!$R1 609
10 TraesCS7B01G451200 chr3B 27513579 27514193 614 True 821 821 90.7470 1 616 1 chr3B.!!$R2 615
11 TraesCS7B01G451200 chr2A 138922377 138922990 613 True 819 819 90.7170 1 614 1 chr2A.!!$R1 613
12 TraesCS7B01G451200 chr2A 20365664 20366182 518 False 418 418 81.8360 1165 1667 1 chr2A.!!$F2 502
13 TraesCS7B01G451200 chr6A 590370891 590371500 609 True 817 817 90.8200 1 610 1 chr6A.!!$R2 609
14 TraesCS7B01G451200 chr1B 608995794 608996442 648 True 588 588 83.1610 995 1665 1 chr1B.!!$R1 670
15 TraesCS7B01G451200 chrUn 16657740 16658261 521 False 409 409 81.5590 1165 1667 1 chrUn.!!$F1 502
16 TraesCS7B01G451200 chrUn 233476493 233477197 704 True 403 403 78.0590 1001 1667 1 chrUn.!!$R1 666
17 TraesCS7B01G451200 chrUn 266170456 266171183 727 True 263 411 85.2515 1001 1667 2 chrUn.!!$R2 666
18 TraesCS7B01G451200 chr2D 15228745 15229472 727 False 263 411 85.2515 1001 1667 2 chr2D.!!$F2 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 58 0.540365 CATTTGGCCTGTGGAGGTGT 60.540 55.0 3.32 0.0 42.15 4.16 F
190 192 1.050988 CCCACATCTCATCCCCGTCT 61.051 60.0 0.00 0.0 0.00 4.18 F
1684 1857 0.324460 ACCTACACCCTCCTTCCTCG 60.324 60.0 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1611 1784 0.462047 ATGGTTCCGAAGATGACGCC 60.462 55.0 0.00 0.0 0.0 5.68 R
2182 2371 1.166531 ACAAGGAAAGGACACGCAGC 61.167 55.0 0.00 0.0 0.0 5.25 R
3388 3626 0.031043 AAAAACAACCGCGGCCTTAC 59.969 50.0 28.58 0.0 0.0 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 0.540365 CATTTGGCCTGTGGAGGTGT 60.540 55.000 3.32 0.00 42.15 4.16
179 181 4.785346 AGCAATAATGTCTCCCACATCT 57.215 40.909 0.00 0.00 45.77 2.90
190 192 1.050988 CCCACATCTCATCCCCGTCT 61.051 60.000 0.00 0.00 0.00 4.18
237 239 1.344438 GATGTGTGGAGGTGTGTCTCA 59.656 52.381 0.00 0.00 35.58 3.27
245 247 1.546476 GAGGTGTGTCTCAGTCGGATT 59.454 52.381 0.00 0.00 34.13 3.01
414 416 3.181434 TGGGACCTTAGCACAATGACTTT 60.181 43.478 0.00 0.00 0.00 2.66
498 501 3.071206 ATCGGCTCGCTCCACTGT 61.071 61.111 0.00 0.00 0.00 3.55
514 517 3.302555 CACTGTTTGTAGTCGTCGCTAA 58.697 45.455 0.00 0.00 0.00 3.09
541 544 6.436843 GTCCATAGACCTGGTTGTAATTTG 57.563 41.667 0.00 0.00 37.00 2.32
785 808 3.010696 TCAGGGCAACTTAGAGAGAGAGA 59.989 47.826 0.00 0.00 0.00 3.10
786 809 3.381272 CAGGGCAACTTAGAGAGAGAGAG 59.619 52.174 0.00 0.00 0.00 3.20
787 810 3.268334 AGGGCAACTTAGAGAGAGAGAGA 59.732 47.826 0.00 0.00 0.00 3.10
788 811 3.632145 GGGCAACTTAGAGAGAGAGAGAG 59.368 52.174 0.00 0.00 0.00 3.20
869 899 3.325425 TCAGTTCCAACGATAACTTGGGA 59.675 43.478 2.27 0.00 39.04 4.37
870 900 4.069304 CAGTTCCAACGATAACTTGGGAA 58.931 43.478 2.27 0.00 39.04 3.97
871 901 4.154195 CAGTTCCAACGATAACTTGGGAAG 59.846 45.833 2.27 0.00 39.04 3.46
872 902 3.343941 TCCAACGATAACTTGGGAAGG 57.656 47.619 2.27 0.00 39.04 3.46
873 903 1.743394 CCAACGATAACTTGGGAAGGC 59.257 52.381 0.00 0.00 35.42 4.35
874 904 1.396996 CAACGATAACTTGGGAAGGCG 59.603 52.381 0.00 0.00 0.00 5.52
895 925 2.882876 CCGCCGCGCCTATATACT 59.117 61.111 7.42 0.00 0.00 2.12
1038 1068 1.802715 CCGCAACGTCGTCGGTATT 60.803 57.895 15.33 0.00 41.85 1.89
1158 1218 6.118170 AGTAATCTATATGCATGGATGGTGC 58.882 40.000 10.16 1.16 42.81 5.01
1285 1409 3.171388 GGCCTCCCCATCGTCCAT 61.171 66.667 0.00 0.00 0.00 3.41
1611 1784 1.005804 CATGATCGTCGGCATCCTCG 61.006 60.000 0.00 0.00 0.00 4.63
1684 1857 0.324460 ACCTACACCCTCCTTCCTCG 60.324 60.000 0.00 0.00 0.00 4.63
1846 2019 1.217244 GCCGTTCTGGTCGTATGGT 59.783 57.895 0.00 0.00 41.21 3.55
1899 2086 4.678044 CGTGGTTAATCTGCTAGCTCTTGA 60.678 45.833 17.23 9.25 0.00 3.02
1900 2087 5.363939 GTGGTTAATCTGCTAGCTCTTGAT 58.636 41.667 17.23 11.07 0.00 2.57
1902 2089 4.683781 GGTTAATCTGCTAGCTCTTGATCG 59.316 45.833 17.23 0.00 0.00 3.69
1907 2096 1.202348 TGCTAGCTCTTGATCGAGTGC 60.202 52.381 23.74 23.74 36.63 4.40
2029 2218 8.438676 ACATATTCTGTATTTTGTGGCTAGAC 57.561 34.615 0.00 0.00 35.91 2.59
2037 2226 3.293311 TTTGTGGCTAGACTCACGTAC 57.707 47.619 0.00 0.00 36.74 3.67
2088 2277 3.844577 AGAAGATGCATGCTGTTCAAC 57.155 42.857 20.33 10.57 0.00 3.18
2155 2344 1.649664 TTTGTGTGCACATGTTTGGC 58.350 45.000 24.69 8.68 41.52 4.52
2182 2371 0.110373 GCTCAAAGGTAACGCAACCG 60.110 55.000 1.41 0.00 44.77 4.44
2265 2454 1.480137 CCAAACTTTCTGTTGCACCCA 59.520 47.619 0.00 0.00 39.13 4.51
2336 2525 2.499693 TGGAAGAGCCGTTCATGACATA 59.500 45.455 0.00 0.00 40.66 2.29
2410 2599 4.386711 CGAGGATGCATGCATGGATATAT 58.613 43.478 36.73 19.90 39.04 0.86
2469 2658 5.645067 TCACTCTTGCCAAATCTATGAGTTG 59.355 40.000 1.40 1.40 37.37 3.16
2595 2786 5.467063 GCTCTTATTACCTGGTGATGTAAGC 59.533 44.000 13.86 13.85 31.05 3.09
2662 2853 4.160329 TCAAGACCAAGAGTGTGGAGTAT 58.840 43.478 0.00 0.00 41.65 2.12
2713 2904 1.965930 CAACGGCTGCTGCTGGTTA 60.966 57.895 25.86 0.00 44.27 2.85
2743 2934 3.243234 CGCTCATCAAGTTCGACCTCTAT 60.243 47.826 0.00 0.00 0.00 1.98
2768 2959 6.543100 TGTCACGGTCAGTACATACATACATA 59.457 38.462 0.00 0.00 0.00 2.29
2851 3066 2.735663 CTCATCGATCTAACTGCCATGC 59.264 50.000 0.00 0.00 0.00 4.06
2852 3067 2.102925 TCATCGATCTAACTGCCATGCA 59.897 45.455 0.00 0.00 36.92 3.96
2853 3068 2.916702 TCGATCTAACTGCCATGCAT 57.083 45.000 0.00 0.00 38.13 3.96
2854 3069 2.486918 TCGATCTAACTGCCATGCATG 58.513 47.619 20.19 20.19 38.13 4.06
3158 3382 2.802816 CAAGTGTGGTGTGCTAGTCTTC 59.197 50.000 0.00 0.00 0.00 2.87
3198 3432 0.318360 ATCGAGTGTGCGTTTCGTGA 60.318 50.000 0.00 0.00 35.90 4.35
3199 3433 0.525882 TCGAGTGTGCGTTTCGTGAA 60.526 50.000 0.00 0.00 35.90 3.18
3200 3434 0.381428 CGAGTGTGCGTTTCGTGAAC 60.381 55.000 0.00 0.00 34.82 3.18
3201 3435 0.042448 GAGTGTGCGTTTCGTGAACC 60.042 55.000 0.00 0.00 34.67 3.62
3202 3436 0.741574 AGTGTGCGTTTCGTGAACCA 60.742 50.000 0.00 0.00 34.67 3.67
3203 3437 0.587985 GTGTGCGTTTCGTGAACCAC 60.588 55.000 13.39 13.39 38.66 4.16
3204 3438 0.741574 TGTGCGTTTCGTGAACCACT 60.742 50.000 17.27 0.00 38.82 4.00
3205 3439 0.315869 GTGCGTTTCGTGAACCACTG 60.316 55.000 13.18 0.00 36.91 3.66
3206 3440 0.741574 TGCGTTTCGTGAACCACTGT 60.742 50.000 0.00 0.00 34.67 3.55
3207 3441 0.042448 GCGTTTCGTGAACCACTGTC 60.042 55.000 0.00 0.00 34.67 3.51
3253 3487 1.016627 TATTCATGCAGAGGCGCAAC 58.983 50.000 10.83 1.62 46.87 4.17
3277 3511 8.263854 ACCTGGAACTTAATATATGTAGCTGT 57.736 34.615 0.00 0.00 0.00 4.40
3343 3581 8.614346 GTGTACTCTCTGAATCTATTCTTACGT 58.386 37.037 0.00 0.00 37.67 3.57
3352 3590 8.950403 TGAATCTATTCTTACGTGATGATACG 57.050 34.615 0.00 0.00 42.05 3.06
3360 3598 9.776158 ATTCTTACGTGATGATACGATATCTTC 57.224 33.333 0.00 2.08 46.46 2.87
3375 3613 7.726216 ACGATATCTTCATGAATTACTGTGGA 58.274 34.615 8.96 0.26 0.00 4.02
3377 3615 7.148672 CGATATCTTCATGAATTACTGTGGAGC 60.149 40.741 8.96 0.00 0.00 4.70
3378 3616 5.426689 TCTTCATGAATTACTGTGGAGCT 57.573 39.130 8.96 0.00 0.00 4.09
3379 3617 5.809001 TCTTCATGAATTACTGTGGAGCTT 58.191 37.500 8.96 0.00 0.00 3.74
3380 3618 6.240894 TCTTCATGAATTACTGTGGAGCTTT 58.759 36.000 8.96 0.00 0.00 3.51
3382 3620 6.899393 TCATGAATTACTGTGGAGCTTTTT 57.101 33.333 0.00 0.00 0.00 1.94
3384 3622 8.402798 TCATGAATTACTGTGGAGCTTTTTAA 57.597 30.769 0.00 0.00 0.00 1.52
3388 3626 8.087750 TGAATTACTGTGGAGCTTTTTAATTGG 58.912 33.333 0.00 0.00 0.00 3.16
3393 3631 6.015434 ACTGTGGAGCTTTTTAATTGGTAAGG 60.015 38.462 0.00 0.00 0.00 2.69
3395 3633 4.221924 TGGAGCTTTTTAATTGGTAAGGCC 59.778 41.667 0.00 0.00 37.90 5.19
3396 3634 4.421058 GAGCTTTTTAATTGGTAAGGCCG 58.579 43.478 0.00 0.00 41.21 6.13
3399 3637 1.096416 TTTAATTGGTAAGGCCGCGG 58.904 50.000 24.05 24.05 41.21 6.46
3401 3639 0.035247 TAATTGGTAAGGCCGCGGTT 60.035 50.000 28.70 16.89 41.21 4.44
3405 3643 2.263021 GGTAAGGCCGCGGTTGTTT 61.263 57.895 28.70 17.42 0.00 2.83
3431 3669 4.457949 GTGGAACCACATTTATCTTCCGTT 59.542 41.667 17.69 0.00 45.53 4.44
3432 3670 4.698304 TGGAACCACATTTATCTTCCGTTC 59.302 41.667 0.00 0.00 34.25 3.95
3433 3671 4.941873 GGAACCACATTTATCTTCCGTTCT 59.058 41.667 0.00 0.00 31.33 3.01
3437 3675 6.942976 ACCACATTTATCTTCCGTTCTCTTA 58.057 36.000 0.00 0.00 0.00 2.10
3438 3676 7.391620 ACCACATTTATCTTCCGTTCTCTTAA 58.608 34.615 0.00 0.00 0.00 1.85
3440 3678 7.333423 CCACATTTATCTTCCGTTCTCTTAACA 59.667 37.037 0.00 0.00 0.00 2.41
3441 3679 8.169268 CACATTTATCTTCCGTTCTCTTAACAC 58.831 37.037 0.00 0.00 0.00 3.32
3458 3698 2.677524 CCACCACCACCATGCTGG 60.678 66.667 5.44 5.44 45.02 4.85
3469 3709 3.064324 ATGCTGGCTTGGGAACGC 61.064 61.111 0.00 0.00 0.00 4.84
3500 3740 1.394917 CTGTTGCTGAGCCACGATAAC 59.605 52.381 0.23 0.00 0.00 1.89
3502 3742 0.739462 TTGCTGAGCCACGATAACCG 60.739 55.000 0.23 0.00 45.44 4.44
3586 3826 2.357836 CACAGCCCTGCCTCCATT 59.642 61.111 0.00 0.00 0.00 3.16
3589 3829 0.178924 ACAGCCCTGCCTCCATTTTT 60.179 50.000 0.00 0.00 0.00 1.94
3590 3830 1.077005 ACAGCCCTGCCTCCATTTTTA 59.923 47.619 0.00 0.00 0.00 1.52
3591 3831 1.753073 CAGCCCTGCCTCCATTTTTAG 59.247 52.381 0.00 0.00 0.00 1.85
3592 3832 1.640670 AGCCCTGCCTCCATTTTTAGA 59.359 47.619 0.00 0.00 0.00 2.10
3593 3833 2.027385 GCCCTGCCTCCATTTTTAGAG 58.973 52.381 0.00 0.00 0.00 2.43
3699 3941 5.987777 TTTTGGTTGTCATTGCTCATTTG 57.012 34.783 0.00 0.00 0.00 2.32
3717 3959 3.988379 TTGGACAGACAAATGAGCAAC 57.012 42.857 0.00 0.00 0.00 4.17
3718 3960 2.929641 TGGACAGACAAATGAGCAACA 58.070 42.857 0.00 0.00 0.00 3.33
3719 3961 3.489355 TGGACAGACAAATGAGCAACAT 58.511 40.909 0.00 0.00 41.45 2.71
3720 3962 3.253921 TGGACAGACAAATGAGCAACATG 59.746 43.478 0.00 0.00 39.39 3.21
3721 3963 3.254166 GGACAGACAAATGAGCAACATGT 59.746 43.478 0.00 0.00 39.39 3.21
3722 3964 4.261741 GGACAGACAAATGAGCAACATGTT 60.262 41.667 4.92 4.92 39.39 2.71
3723 3965 5.266733 ACAGACAAATGAGCAACATGTTT 57.733 34.783 8.77 0.00 39.39 2.83
3724 3966 5.663456 ACAGACAAATGAGCAACATGTTTT 58.337 33.333 8.77 0.00 39.39 2.43
3725 3967 5.750067 ACAGACAAATGAGCAACATGTTTTC 59.250 36.000 8.77 10.34 39.39 2.29
3726 3968 4.977963 AGACAAATGAGCAACATGTTTTCG 59.022 37.500 8.77 0.00 39.39 3.46
3727 3969 3.490526 ACAAATGAGCAACATGTTTTCGC 59.509 39.130 8.77 9.83 39.39 4.70
3728 3970 2.352503 ATGAGCAACATGTTTTCGCC 57.647 45.000 8.77 4.89 37.87 5.54
3729 3971 0.040514 TGAGCAACATGTTTTCGCCG 60.041 50.000 8.77 0.00 0.00 6.46
3730 3972 0.040425 GAGCAACATGTTTTCGCCGT 60.040 50.000 8.77 0.00 0.00 5.68
3731 3973 0.040425 AGCAACATGTTTTCGCCGTC 60.040 50.000 8.77 0.00 0.00 4.79
3732 3974 1.327292 GCAACATGTTTTCGCCGTCG 61.327 55.000 8.77 0.00 0.00 5.12
3733 3975 0.233590 CAACATGTTTTCGCCGTCGA 59.766 50.000 8.77 0.00 43.89 4.20
3734 3976 1.136085 CAACATGTTTTCGCCGTCGAT 60.136 47.619 8.77 0.00 45.04 3.59
3735 3977 0.719465 ACATGTTTTCGCCGTCGATC 59.281 50.000 0.00 0.00 45.04 3.69
3736 3978 0.026285 CATGTTTTCGCCGTCGATCC 59.974 55.000 0.00 0.00 45.04 3.36
3737 3979 1.087771 ATGTTTTCGCCGTCGATCCC 61.088 55.000 0.00 0.00 45.04 3.85
3738 3980 1.738830 GTTTTCGCCGTCGATCCCA 60.739 57.895 0.00 0.00 45.04 4.37
3739 3981 1.087771 GTTTTCGCCGTCGATCCCAT 61.088 55.000 0.00 0.00 45.04 4.00
3740 3982 0.391927 TTTTCGCCGTCGATCCCATT 60.392 50.000 0.00 0.00 45.04 3.16
3741 3983 1.087202 TTTCGCCGTCGATCCCATTG 61.087 55.000 0.00 0.00 45.04 2.82
3742 3984 1.950973 TTCGCCGTCGATCCCATTGA 61.951 55.000 0.00 0.00 45.04 2.57
3743 3985 1.300931 CGCCGTCGATCCCATTGAT 60.301 57.895 0.00 0.00 38.10 2.57
3744 3986 1.560004 CGCCGTCGATCCCATTGATG 61.560 60.000 0.00 0.00 38.10 3.07
3745 3987 0.532862 GCCGTCGATCCCATTGATGT 60.533 55.000 0.00 0.00 32.41 3.06
3746 3988 1.953559 CCGTCGATCCCATTGATGTT 58.046 50.000 0.00 0.00 32.41 2.71
3747 3989 1.867233 CCGTCGATCCCATTGATGTTC 59.133 52.381 0.00 0.00 32.41 3.18
3748 3990 2.483714 CCGTCGATCCCATTGATGTTCT 60.484 50.000 0.00 0.00 32.41 3.01
3749 3991 3.198068 CGTCGATCCCATTGATGTTCTT 58.802 45.455 0.00 0.00 32.41 2.52
3750 3992 4.368315 CGTCGATCCCATTGATGTTCTTA 58.632 43.478 0.00 0.00 32.41 2.10
3751 3993 4.808895 CGTCGATCCCATTGATGTTCTTAA 59.191 41.667 0.00 0.00 32.41 1.85
3752 3994 5.276868 CGTCGATCCCATTGATGTTCTTAAC 60.277 44.000 0.00 0.00 32.41 2.01
3753 3995 5.584649 GTCGATCCCATTGATGTTCTTAACA 59.415 40.000 0.00 0.00 46.94 2.41
3790 4032 7.651027 ATCAAGAAATACTTCAAAGGATGGG 57.349 36.000 0.00 0.00 36.61 4.00
3791 4033 5.951747 TCAAGAAATACTTCAAAGGATGGGG 59.048 40.000 0.00 0.00 36.61 4.96
3792 4034 5.536497 AGAAATACTTCAAAGGATGGGGT 57.464 39.130 0.00 0.00 33.64 4.95
3793 4035 5.903923 AGAAATACTTCAAAGGATGGGGTT 58.096 37.500 0.00 0.00 33.64 4.11
3794 4036 5.952347 AGAAATACTTCAAAGGATGGGGTTC 59.048 40.000 0.00 0.00 33.64 3.62
3795 4037 2.604912 ACTTCAAAGGATGGGGTTCC 57.395 50.000 0.00 0.00 35.90 3.62
3796 4038 1.077169 ACTTCAAAGGATGGGGTTCCC 59.923 52.381 0.00 0.00 45.71 3.97
3806 4048 2.990977 GGGGTTCCCATTCCTTTGG 58.009 57.895 10.25 0.00 44.65 3.28
3807 4049 0.411848 GGGGTTCCCATTCCTTTGGA 59.588 55.000 10.25 0.00 44.65 3.53
3808 4050 1.557099 GGGTTCCCATTCCTTTGGAC 58.443 55.000 2.59 0.00 39.25 4.02
3809 4051 1.203125 GGGTTCCCATTCCTTTGGACA 60.203 52.381 2.59 0.00 39.25 4.02
3810 4052 2.559705 GGGTTCCCATTCCTTTGGACAT 60.560 50.000 2.59 0.00 39.25 3.06
3811 4053 2.497273 GGTTCCCATTCCTTTGGACATG 59.503 50.000 0.00 0.00 39.25 3.21
3812 4054 1.851304 TCCCATTCCTTTGGACATGC 58.149 50.000 0.00 0.00 39.25 4.06
3813 4055 0.826062 CCCATTCCTTTGGACATGCC 59.174 55.000 0.00 0.00 39.25 4.40
3822 4064 3.963733 TGGACATGCCAAGAAGAGG 57.036 52.632 6.42 0.00 45.87 3.69
3823 4065 1.361204 TGGACATGCCAAGAAGAGGA 58.639 50.000 6.42 0.00 45.87 3.71
3824 4066 1.704628 TGGACATGCCAAGAAGAGGAA 59.295 47.619 6.42 0.00 45.87 3.36
3825 4067 2.108075 TGGACATGCCAAGAAGAGGAAA 59.892 45.455 6.42 0.00 45.87 3.13
3826 4068 3.157087 GGACATGCCAAGAAGAGGAAAA 58.843 45.455 0.00 0.00 36.34 2.29
3827 4069 3.573967 GGACATGCCAAGAAGAGGAAAAA 59.426 43.478 0.00 0.00 36.34 1.94
3828 4070 4.321527 GGACATGCCAAGAAGAGGAAAAAG 60.322 45.833 0.00 0.00 36.34 2.27
3829 4071 4.218312 ACATGCCAAGAAGAGGAAAAAGT 58.782 39.130 0.00 0.00 0.00 2.66
3830 4072 4.038402 ACATGCCAAGAAGAGGAAAAAGTG 59.962 41.667 0.00 0.00 0.00 3.16
3831 4073 3.631250 TGCCAAGAAGAGGAAAAAGTGT 58.369 40.909 0.00 0.00 0.00 3.55
3832 4074 4.787551 TGCCAAGAAGAGGAAAAAGTGTA 58.212 39.130 0.00 0.00 0.00 2.90
3833 4075 5.385198 TGCCAAGAAGAGGAAAAAGTGTAT 58.615 37.500 0.00 0.00 0.00 2.29
3834 4076 5.833131 TGCCAAGAAGAGGAAAAAGTGTATT 59.167 36.000 0.00 0.00 0.00 1.89
3835 4077 7.001674 TGCCAAGAAGAGGAAAAAGTGTATTA 58.998 34.615 0.00 0.00 0.00 0.98
3836 4078 7.504238 TGCCAAGAAGAGGAAAAAGTGTATTAA 59.496 33.333 0.00 0.00 0.00 1.40
3837 4079 8.023706 GCCAAGAAGAGGAAAAAGTGTATTAAG 58.976 37.037 0.00 0.00 0.00 1.85
3838 4080 8.515414 CCAAGAAGAGGAAAAAGTGTATTAAGG 58.485 37.037 0.00 0.00 0.00 2.69
3839 4081 9.284968 CAAGAAGAGGAAAAAGTGTATTAAGGA 57.715 33.333 0.00 0.00 0.00 3.36
3840 4082 9.508642 AAGAAGAGGAAAAAGTGTATTAAGGAG 57.491 33.333 0.00 0.00 0.00 3.69
3841 4083 8.103935 AGAAGAGGAAAAAGTGTATTAAGGAGG 58.896 37.037 0.00 0.00 0.00 4.30
3842 4084 7.569599 AGAGGAAAAAGTGTATTAAGGAGGA 57.430 36.000 0.00 0.00 0.00 3.71
3843 4085 7.625469 AGAGGAAAAAGTGTATTAAGGAGGAG 58.375 38.462 0.00 0.00 0.00 3.69
3844 4086 7.237887 AGAGGAAAAAGTGTATTAAGGAGGAGT 59.762 37.037 0.00 0.00 0.00 3.85
3845 4087 7.756614 AGGAAAAAGTGTATTAAGGAGGAGTT 58.243 34.615 0.00 0.00 0.00 3.01
3846 4088 7.665974 AGGAAAAAGTGTATTAAGGAGGAGTTG 59.334 37.037 0.00 0.00 0.00 3.16
3847 4089 7.094334 GGAAAAAGTGTATTAAGGAGGAGTTGG 60.094 40.741 0.00 0.00 0.00 3.77
3848 4090 6.697641 AAAGTGTATTAAGGAGGAGTTGGA 57.302 37.500 0.00 0.00 0.00 3.53
3849 4091 6.697641 AAGTGTATTAAGGAGGAGTTGGAA 57.302 37.500 0.00 0.00 0.00 3.53
3850 4092 6.301169 AGTGTATTAAGGAGGAGTTGGAAG 57.699 41.667 0.00 0.00 0.00 3.46
3851 4093 6.023603 AGTGTATTAAGGAGGAGTTGGAAGA 58.976 40.000 0.00 0.00 0.00 2.87
3852 4094 6.155393 AGTGTATTAAGGAGGAGTTGGAAGAG 59.845 42.308 0.00 0.00 0.00 2.85
3853 4095 6.154706 GTGTATTAAGGAGGAGTTGGAAGAGA 59.845 42.308 0.00 0.00 0.00 3.10
3854 4096 6.903534 TGTATTAAGGAGGAGTTGGAAGAGAT 59.096 38.462 0.00 0.00 0.00 2.75
3855 4097 6.899892 ATTAAGGAGGAGTTGGAAGAGATT 57.100 37.500 0.00 0.00 0.00 2.40
3856 4098 4.566426 AAGGAGGAGTTGGAAGAGATTG 57.434 45.455 0.00 0.00 0.00 2.67
3857 4099 3.796111 AGGAGGAGTTGGAAGAGATTGA 58.204 45.455 0.00 0.00 0.00 2.57
3858 4100 3.774216 AGGAGGAGTTGGAAGAGATTGAG 59.226 47.826 0.00 0.00 0.00 3.02
3859 4101 3.772025 GGAGGAGTTGGAAGAGATTGAGA 59.228 47.826 0.00 0.00 0.00 3.27
3860 4102 4.141959 GGAGGAGTTGGAAGAGATTGAGAG 60.142 50.000 0.00 0.00 0.00 3.20
3861 4103 4.682563 AGGAGTTGGAAGAGATTGAGAGA 58.317 43.478 0.00 0.00 0.00 3.10
3862 4104 5.279685 AGGAGTTGGAAGAGATTGAGAGAT 58.720 41.667 0.00 0.00 0.00 2.75
3863 4105 5.725822 AGGAGTTGGAAGAGATTGAGAGATT 59.274 40.000 0.00 0.00 0.00 2.40
3864 4106 5.816777 GGAGTTGGAAGAGATTGAGAGATTG 59.183 44.000 0.00 0.00 0.00 2.67
3865 4107 5.743117 AGTTGGAAGAGATTGAGAGATTGG 58.257 41.667 0.00 0.00 0.00 3.16
3866 4108 5.486775 AGTTGGAAGAGATTGAGAGATTGGA 59.513 40.000 0.00 0.00 0.00 3.53
3867 4109 5.611128 TGGAAGAGATTGAGAGATTGGAG 57.389 43.478 0.00 0.00 0.00 3.86
3868 4110 4.408270 TGGAAGAGATTGAGAGATTGGAGG 59.592 45.833 0.00 0.00 0.00 4.30
3869 4111 4.653341 GGAAGAGATTGAGAGATTGGAGGA 59.347 45.833 0.00 0.00 0.00 3.71
3870 4112 5.130145 GGAAGAGATTGAGAGATTGGAGGAA 59.870 44.000 0.00 0.00 0.00 3.36
3871 4113 6.352565 GGAAGAGATTGAGAGATTGGAGGAAA 60.353 42.308 0.00 0.00 0.00 3.13
3872 4114 6.633325 AGAGATTGAGAGATTGGAGGAAAA 57.367 37.500 0.00 0.00 0.00 2.29
3873 4115 7.210618 AGAGATTGAGAGATTGGAGGAAAAT 57.789 36.000 0.00 0.00 0.00 1.82
3874 4116 7.055378 AGAGATTGAGAGATTGGAGGAAAATG 58.945 38.462 0.00 0.00 0.00 2.32
3875 4117 6.127793 AGATTGAGAGATTGGAGGAAAATGG 58.872 40.000 0.00 0.00 0.00 3.16
3876 4118 5.519183 TTGAGAGATTGGAGGAAAATGGA 57.481 39.130 0.00 0.00 0.00 3.41
3877 4119 4.848357 TGAGAGATTGGAGGAAAATGGAC 58.152 43.478 0.00 0.00 0.00 4.02
3878 4120 4.289410 TGAGAGATTGGAGGAAAATGGACA 59.711 41.667 0.00 0.00 0.00 4.02
3879 4121 4.593956 AGAGATTGGAGGAAAATGGACAC 58.406 43.478 0.00 0.00 0.00 3.67
3880 4122 3.696548 GAGATTGGAGGAAAATGGACACC 59.303 47.826 0.00 0.00 0.00 4.16
3881 4123 3.334881 AGATTGGAGGAAAATGGACACCT 59.665 43.478 0.00 0.00 35.29 4.00
3882 4124 3.611025 TTGGAGGAAAATGGACACCTT 57.389 42.857 0.00 0.00 32.53 3.50
3883 4125 2.875296 TGGAGGAAAATGGACACCTTG 58.125 47.619 0.00 0.00 32.53 3.61
3884 4126 2.445145 TGGAGGAAAATGGACACCTTGA 59.555 45.455 0.00 0.00 32.53 3.02
3885 4127 3.075882 TGGAGGAAAATGGACACCTTGAT 59.924 43.478 0.00 0.00 32.53 2.57
3886 4128 3.696548 GGAGGAAAATGGACACCTTGATC 59.303 47.826 0.00 0.00 32.53 2.92
3887 4129 4.568592 GGAGGAAAATGGACACCTTGATCT 60.569 45.833 0.00 0.00 32.53 2.75
3888 4130 4.338879 AGGAAAATGGACACCTTGATCTG 58.661 43.478 0.00 0.00 0.00 2.90
3889 4131 3.445096 GGAAAATGGACACCTTGATCTGG 59.555 47.826 0.00 0.00 0.00 3.86
3890 4132 4.335416 GAAAATGGACACCTTGATCTGGA 58.665 43.478 11.38 0.00 0.00 3.86
3891 4133 3.641434 AATGGACACCTTGATCTGGAG 57.359 47.619 11.38 6.74 0.00 3.86
3892 4134 2.030027 TGGACACCTTGATCTGGAGT 57.970 50.000 11.38 9.50 0.00 3.85
3893 4135 2.338809 TGGACACCTTGATCTGGAGTT 58.661 47.619 11.38 0.00 0.00 3.01
3894 4136 3.516586 TGGACACCTTGATCTGGAGTTA 58.483 45.455 11.38 2.55 0.00 2.24
3895 4137 4.104086 TGGACACCTTGATCTGGAGTTAT 58.896 43.478 11.38 0.00 0.00 1.89
3896 4138 5.277250 TGGACACCTTGATCTGGAGTTATA 58.723 41.667 11.38 0.38 0.00 0.98
3897 4139 5.905331 TGGACACCTTGATCTGGAGTTATAT 59.095 40.000 11.38 0.00 0.00 0.86
3898 4140 6.183361 TGGACACCTTGATCTGGAGTTATATG 60.183 42.308 11.38 1.79 0.00 1.78
3899 4141 6.042093 GGACACCTTGATCTGGAGTTATATGA 59.958 42.308 11.38 0.00 0.00 2.15
3900 4142 7.419057 GGACACCTTGATCTGGAGTTATATGAA 60.419 40.741 11.38 0.00 0.00 2.57
3901 4143 7.861629 ACACCTTGATCTGGAGTTATATGAAA 58.138 34.615 11.38 0.00 0.00 2.69
3902 4144 8.328758 ACACCTTGATCTGGAGTTATATGAAAA 58.671 33.333 11.38 0.00 0.00 2.29
3903 4145 9.177608 CACCTTGATCTGGAGTTATATGAAAAA 57.822 33.333 11.38 0.00 0.00 1.94
3921 4163 3.295800 AGGACGGCCCTTAACTCG 58.704 61.111 1.76 0.00 44.85 4.18
3922 4164 2.186125 GGACGGCCCTTAACTCGG 59.814 66.667 0.00 0.00 0.00 4.63
3923 4165 2.353610 GGACGGCCCTTAACTCGGA 61.354 63.158 0.00 0.00 0.00 4.55
3924 4166 1.593265 GACGGCCCTTAACTCGGAA 59.407 57.895 0.00 0.00 0.00 4.30
3925 4167 0.738762 GACGGCCCTTAACTCGGAAC 60.739 60.000 0.00 0.00 0.00 3.62
3926 4168 1.190178 ACGGCCCTTAACTCGGAACT 61.190 55.000 0.00 0.00 0.00 3.01
3927 4169 0.739813 CGGCCCTTAACTCGGAACTG 60.740 60.000 0.00 0.00 0.00 3.16
3928 4170 0.611714 GGCCCTTAACTCGGAACTGA 59.388 55.000 0.00 0.00 0.00 3.41
3929 4171 1.002773 GGCCCTTAACTCGGAACTGAA 59.997 52.381 0.00 0.00 0.00 3.02
3930 4172 2.355818 GGCCCTTAACTCGGAACTGAAT 60.356 50.000 0.00 0.00 0.00 2.57
3931 4173 2.678336 GCCCTTAACTCGGAACTGAATG 59.322 50.000 0.00 0.00 0.00 2.67
3932 4174 3.618997 GCCCTTAACTCGGAACTGAATGA 60.619 47.826 0.00 0.00 0.00 2.57
3933 4175 4.184629 CCCTTAACTCGGAACTGAATGAG 58.815 47.826 0.00 0.00 34.65 2.90
3934 4176 3.619038 CCTTAACTCGGAACTGAATGAGC 59.381 47.826 0.00 0.00 31.64 4.26
3935 4177 4.499183 CTTAACTCGGAACTGAATGAGCT 58.501 43.478 0.00 0.00 31.64 4.09
3936 4178 2.663826 ACTCGGAACTGAATGAGCTC 57.336 50.000 6.82 6.82 31.64 4.09
3937 4179 1.205893 ACTCGGAACTGAATGAGCTCC 59.794 52.381 12.15 0.00 31.64 4.70
3938 4180 1.480137 CTCGGAACTGAATGAGCTCCT 59.520 52.381 12.15 0.00 0.00 3.69
3939 4181 1.205655 TCGGAACTGAATGAGCTCCTG 59.794 52.381 12.15 2.55 0.00 3.86
3940 4182 1.205655 CGGAACTGAATGAGCTCCTGA 59.794 52.381 12.15 0.00 0.00 3.86
3941 4183 2.158986 CGGAACTGAATGAGCTCCTGAT 60.159 50.000 12.15 0.00 0.00 2.90
3942 4184 3.465871 GGAACTGAATGAGCTCCTGATC 58.534 50.000 12.15 4.81 0.00 2.92
3943 4185 3.118482 GGAACTGAATGAGCTCCTGATCA 60.118 47.826 12.15 9.18 43.13 2.92
3949 4191 3.773418 ATGAGCTCCTGATCATGGAAG 57.227 47.619 12.15 9.32 46.17 3.46
3950 4192 2.755686 TGAGCTCCTGATCATGGAAGA 58.244 47.619 12.15 0.00 33.24 2.87
3951 4193 3.109928 TGAGCTCCTGATCATGGAAGAA 58.890 45.455 12.15 0.87 33.24 2.52
3952 4194 3.118482 TGAGCTCCTGATCATGGAAGAAC 60.118 47.826 12.15 7.41 33.24 3.01
3953 4195 3.113824 AGCTCCTGATCATGGAAGAACT 58.886 45.455 12.95 7.27 32.61 3.01
3954 4196 3.522750 AGCTCCTGATCATGGAAGAACTT 59.477 43.478 12.95 0.00 32.61 2.66
3955 4197 4.018597 AGCTCCTGATCATGGAAGAACTTT 60.019 41.667 12.95 0.00 32.61 2.66
3956 4198 4.704057 GCTCCTGATCATGGAAGAACTTTT 59.296 41.667 12.95 0.00 32.61 2.27
3957 4199 5.163673 GCTCCTGATCATGGAAGAACTTTTC 60.164 44.000 12.95 0.00 32.61 2.29
3958 4200 6.131972 TCCTGATCATGGAAGAACTTTTCT 57.868 37.500 10.41 0.00 43.15 2.52
3959 4201 5.942236 TCCTGATCATGGAAGAACTTTTCTG 59.058 40.000 10.41 0.00 40.59 3.02
3960 4202 5.125097 CCTGATCATGGAAGAACTTTTCTGG 59.875 44.000 0.00 0.00 40.59 3.86
3961 4203 5.634118 TGATCATGGAAGAACTTTTCTGGT 58.366 37.500 0.00 0.00 40.59 4.00
3962 4204 6.070656 TGATCATGGAAGAACTTTTCTGGTT 58.929 36.000 0.00 0.00 40.59 3.67
3963 4205 7.230747 TGATCATGGAAGAACTTTTCTGGTTA 58.769 34.615 0.00 0.00 40.59 2.85
3964 4206 6.877611 TCATGGAAGAACTTTTCTGGTTAC 57.122 37.500 0.00 0.00 40.59 2.50
3965 4207 6.361433 TCATGGAAGAACTTTTCTGGTTACA 58.639 36.000 0.00 0.00 40.59 2.41
3966 4208 6.831353 TCATGGAAGAACTTTTCTGGTTACAA 59.169 34.615 0.00 0.00 40.59 2.41
3967 4209 6.445357 TGGAAGAACTTTTCTGGTTACAAC 57.555 37.500 0.00 0.00 40.59 3.32
3968 4210 5.946972 TGGAAGAACTTTTCTGGTTACAACA 59.053 36.000 0.00 0.00 40.59 3.33
3969 4211 6.127842 TGGAAGAACTTTTCTGGTTACAACAC 60.128 38.462 0.00 0.00 40.59 3.32
3970 4212 6.095021 GGAAGAACTTTTCTGGTTACAACACT 59.905 38.462 0.00 0.00 40.59 3.55
3971 4213 6.679327 AGAACTTTTCTGGTTACAACACTC 57.321 37.500 0.00 0.00 38.91 3.51
3972 4214 5.589050 AGAACTTTTCTGGTTACAACACTCC 59.411 40.000 0.00 0.00 38.91 3.85
3973 4215 4.850680 ACTTTTCTGGTTACAACACTCCA 58.149 39.130 0.00 0.00 0.00 3.86
3974 4216 4.881850 ACTTTTCTGGTTACAACACTCCAG 59.118 41.667 0.00 0.00 46.00 3.86
3975 4217 4.497291 TTTCTGGTTACAACACTCCAGT 57.503 40.909 9.39 0.00 45.18 4.00
3985 4227 4.120244 ACTCCAGTGAGCGATGGT 57.880 55.556 0.00 0.00 42.74 3.55
3986 4228 2.366469 ACTCCAGTGAGCGATGGTT 58.634 52.632 0.00 0.00 42.74 3.67
3987 4229 0.036952 ACTCCAGTGAGCGATGGTTG 60.037 55.000 0.00 0.00 42.74 3.77
3988 4230 1.364626 CTCCAGTGAGCGATGGTTGC 61.365 60.000 0.00 0.00 37.84 4.17
3995 4237 2.559785 AGCGATGGTTGCTCAAAGG 58.440 52.632 0.00 0.00 38.62 3.11
3996 4238 0.036732 AGCGATGGTTGCTCAAAGGA 59.963 50.000 0.00 0.00 38.62 3.36
3997 4239 0.449388 GCGATGGTTGCTCAAAGGAG 59.551 55.000 0.00 0.00 44.33 3.69
3998 4240 1.945819 GCGATGGTTGCTCAAAGGAGA 60.946 52.381 0.00 0.00 44.26 3.71
3999 4241 1.734465 CGATGGTTGCTCAAAGGAGAC 59.266 52.381 0.00 0.00 44.26 3.36
4000 4242 2.087646 GATGGTTGCTCAAAGGAGACC 58.912 52.381 0.00 0.00 44.26 3.85
4001 4243 0.250295 TGGTTGCTCAAAGGAGACCG 60.250 55.000 0.00 0.00 44.26 4.79
4002 4244 0.955919 GGTTGCTCAAAGGAGACCGG 60.956 60.000 0.00 0.00 44.26 5.28
4003 4245 0.034896 GTTGCTCAAAGGAGACCGGA 59.965 55.000 9.46 0.00 44.26 5.14
4004 4246 0.762418 TTGCTCAAAGGAGACCGGAA 59.238 50.000 9.46 0.00 44.26 4.30
4005 4247 0.034896 TGCTCAAAGGAGACCGGAAC 59.965 55.000 9.46 0.99 44.26 3.62
4006 4248 0.034896 GCTCAAAGGAGACCGGAACA 59.965 55.000 9.46 0.00 44.26 3.18
4007 4249 1.797025 CTCAAAGGAGACCGGAACAC 58.203 55.000 9.46 0.00 44.26 3.32
4008 4250 1.344763 CTCAAAGGAGACCGGAACACT 59.655 52.381 9.46 1.07 44.26 3.55
4009 4251 2.561419 CTCAAAGGAGACCGGAACACTA 59.439 50.000 9.46 0.00 44.26 2.74
4010 4252 2.298163 TCAAAGGAGACCGGAACACTAC 59.702 50.000 9.46 2.39 0.00 2.73
4011 4253 1.264295 AAGGAGACCGGAACACTACC 58.736 55.000 9.46 1.27 0.00 3.18
4012 4254 0.408700 AGGAGACCGGAACACTACCT 59.591 55.000 9.46 3.82 0.00 3.08
4013 4255 1.203149 AGGAGACCGGAACACTACCTT 60.203 52.381 9.46 0.00 0.00 3.50
4014 4256 1.622312 GGAGACCGGAACACTACCTTT 59.378 52.381 9.46 0.00 0.00 3.11
4015 4257 2.038164 GGAGACCGGAACACTACCTTTT 59.962 50.000 9.46 0.00 0.00 2.27
4016 4258 3.259123 GGAGACCGGAACACTACCTTTTA 59.741 47.826 9.46 0.00 0.00 1.52
4017 4259 4.240888 GAGACCGGAACACTACCTTTTAC 58.759 47.826 9.46 0.00 0.00 2.01
4018 4260 3.007290 AGACCGGAACACTACCTTTTACC 59.993 47.826 9.46 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 2.348998 CTCCACACCTCCACAGGC 59.651 66.667 0.00 0.00 45.05 4.85
56 58 2.696125 GGGGGCCAAGATCCTCCA 60.696 66.667 4.39 0.00 43.96 3.86
179 181 1.076265 ACCATCGAGACGGGGATGA 60.076 57.895 2.77 0.00 42.00 2.92
190 192 0.179121 AACGCTATTCGCACCATCGA 60.179 50.000 0.00 0.00 43.23 3.59
237 239 3.290710 CCAAATCCCATGAAATCCGACT 58.709 45.455 0.00 0.00 0.00 4.18
245 247 1.832883 CACCGACCAAATCCCATGAA 58.167 50.000 0.00 0.00 0.00 2.57
414 416 4.652421 ACCTTGTTGTAGTAGACAGTTGGA 59.348 41.667 0.00 0.00 39.88 3.53
495 498 3.361053 CACTTAGCGACGACTACAAACAG 59.639 47.826 0.00 0.00 0.00 3.16
498 501 2.294233 ACCACTTAGCGACGACTACAAA 59.706 45.455 0.00 0.00 0.00 2.83
541 544 9.953697 CAGTATAGAGAACACAAGAGGTAATAC 57.046 37.037 0.00 0.00 0.00 1.89
562 565 8.957466 CAATCTATTCATCAATCATGGCAGTAT 58.043 33.333 0.00 0.00 32.64 2.12
785 808 3.247162 GGAGGGATAAGCCTTGATCTCT 58.753 50.000 0.00 0.00 35.52 3.10
786 809 2.304470 GGGAGGGATAAGCCTTGATCTC 59.696 54.545 0.00 0.00 36.66 2.75
787 810 2.343625 GGGAGGGATAAGCCTTGATCT 58.656 52.381 0.00 0.00 36.66 2.75
788 811 1.002544 CGGGAGGGATAAGCCTTGATC 59.997 57.143 0.00 0.00 36.66 2.92
1038 1068 3.255888 CGAAGGAGATGACATTCCCGATA 59.744 47.826 11.02 0.00 33.83 2.92
1146 1206 0.738412 GCAACAAGCACCATCCATGC 60.738 55.000 0.00 0.00 44.79 4.06
1158 1218 0.597377 GAAAACCGGCCTGCAACAAG 60.597 55.000 0.00 0.00 0.00 3.16
1285 1409 1.596934 GACGAGGATGCTGTTGGGA 59.403 57.895 0.00 0.00 0.00 4.37
1531 1704 3.124921 CGACGGCCACCATGAACC 61.125 66.667 2.24 0.00 0.00 3.62
1611 1784 0.462047 ATGGTTCCGAAGATGACGCC 60.462 55.000 0.00 0.00 0.00 5.68
1684 1857 1.463805 CACACGTACGATCGATCCAC 58.536 55.000 24.34 15.59 34.70 4.02
1899 2086 3.540211 CCACTCAAAGGCACTCGAT 57.460 52.632 0.00 0.00 38.49 3.59
1907 2096 3.314635 GCATTCATCTAGCCACTCAAAGG 59.685 47.826 0.00 0.00 0.00 3.11
2029 2218 1.874345 AAGCCAGACCCGTACGTGAG 61.874 60.000 15.21 5.09 0.00 3.51
2037 2226 1.961277 GTGTGTGAAGCCAGACCCG 60.961 63.158 0.00 0.00 35.88 5.28
2088 2277 7.226918 TGGATGTCTGAAGTAGATCTACGTAAG 59.773 40.741 23.82 22.49 40.80 2.34
2182 2371 1.166531 ACAAGGAAAGGACACGCAGC 61.167 55.000 0.00 0.00 0.00 5.25
2265 2454 0.889186 AACACGAGATTTTGGCGGCT 60.889 50.000 11.43 0.00 0.00 5.52
2336 2525 5.536161 AGTGCTGGATCACATGTTTTTAGTT 59.464 36.000 0.00 0.00 39.35 2.24
2410 2599 2.730069 CAAAAGAGAACATGCACGCAA 58.270 42.857 0.00 0.00 0.00 4.85
2482 2671 5.937111 AGGTACACAAACTCACTGGTTAAT 58.063 37.500 0.00 0.00 0.00 1.40
2483 2672 5.362105 AGGTACACAAACTCACTGGTTAA 57.638 39.130 0.00 0.00 0.00 2.01
2484 2673 5.599656 AGTAGGTACACAAACTCACTGGTTA 59.400 40.000 0.00 0.00 0.00 2.85
2485 2674 3.926058 AGGTACACAAACTCACTGGTT 57.074 42.857 0.00 0.00 0.00 3.67
2662 2853 0.463654 GCGACAGGGTGAATGGCATA 60.464 55.000 0.00 0.00 0.00 3.14
2743 2934 4.701171 TGTATGTATGTACTGACCGTGACA 59.299 41.667 0.00 0.00 0.00 3.58
2768 2959 9.890629 ACTTGTTTGAGATGTGTATATGTATGT 57.109 29.630 0.00 0.00 0.00 2.29
3158 3382 9.268255 CTCGATCAAGACTAGCTAATTATAACG 57.732 37.037 0.00 0.00 0.00 3.18
3198 3432 2.100879 GAGGGCAGACGACAGTGGTT 62.101 60.000 0.00 0.00 0.00 3.67
3199 3433 2.524394 AGGGCAGACGACAGTGGT 60.524 61.111 0.00 0.00 0.00 4.16
3200 3434 2.262915 GAGGGCAGACGACAGTGG 59.737 66.667 0.00 0.00 0.00 4.00
3201 3435 2.126307 CGAGGGCAGACGACAGTG 60.126 66.667 0.00 0.00 0.00 3.66
3202 3436 2.597805 ACGAGGGCAGACGACAGT 60.598 61.111 0.00 0.00 0.00 3.55
3203 3437 2.126307 CACGAGGGCAGACGACAG 60.126 66.667 0.00 0.00 0.00 3.51
3204 3438 4.357947 GCACGAGGGCAGACGACA 62.358 66.667 0.00 0.00 0.00 4.35
3205 3439 3.858868 TTGCACGAGGGCAGACGAC 62.859 63.158 0.00 0.00 45.88 4.34
3206 3440 2.449031 ATTTGCACGAGGGCAGACGA 62.449 55.000 0.00 0.00 45.88 4.20
3207 3441 1.577328 AATTTGCACGAGGGCAGACG 61.577 55.000 0.00 0.00 45.88 4.18
3253 3487 8.150945 ACACAGCTACATATATTAAGTTCCAGG 58.849 37.037 0.00 0.00 0.00 4.45
3277 3511 7.066043 GTGGTGTAATTATTATTCGGGACAACA 59.934 37.037 0.00 0.00 0.00 3.33
3352 3590 7.877097 AGCTCCACAGTAATTCATGAAGATATC 59.123 37.037 14.54 0.00 0.00 1.63
3357 3595 6.506500 AAAGCTCCACAGTAATTCATGAAG 57.493 37.500 14.54 2.20 0.00 3.02
3360 3598 9.643693 AATTAAAAAGCTCCACAGTAATTCATG 57.356 29.630 0.00 0.00 0.00 3.07
3369 3607 6.389906 CCTTACCAATTAAAAAGCTCCACAG 58.610 40.000 0.00 0.00 0.00 3.66
3371 3609 5.168569 GCCTTACCAATTAAAAAGCTCCAC 58.831 41.667 0.00 0.00 0.00 4.02
3372 3610 4.221924 GGCCTTACCAATTAAAAAGCTCCA 59.778 41.667 0.00 0.00 38.86 3.86
3373 3611 4.676986 CGGCCTTACCAATTAAAAAGCTCC 60.677 45.833 0.00 0.00 39.03 4.70
3375 3613 3.368013 GCGGCCTTACCAATTAAAAAGCT 60.368 43.478 0.00 0.00 39.03 3.74
3377 3615 3.175929 CGCGGCCTTACCAATTAAAAAG 58.824 45.455 0.00 0.00 39.03 2.27
3378 3616 2.094649 CCGCGGCCTTACCAATTAAAAA 60.095 45.455 14.67 0.00 39.03 1.94
3379 3617 1.473278 CCGCGGCCTTACCAATTAAAA 59.527 47.619 14.67 0.00 39.03 1.52
3380 3618 1.096416 CCGCGGCCTTACCAATTAAA 58.904 50.000 14.67 0.00 39.03 1.52
3382 3620 0.035247 AACCGCGGCCTTACCAATTA 60.035 50.000 28.58 0.00 39.03 1.40
3384 3622 2.043980 CAACCGCGGCCTTACCAAT 61.044 57.895 28.58 0.00 39.03 3.16
3388 3626 0.031043 AAAAACAACCGCGGCCTTAC 59.969 50.000 28.58 0.00 0.00 2.34
3393 3631 2.234335 CCACAAAAACAACCGCGGC 61.234 57.895 28.58 0.00 0.00 6.53
3395 3633 0.917939 GTTCCACAAAAACAACCGCG 59.082 50.000 0.00 0.00 0.00 6.46
3396 3634 1.282817 GGTTCCACAAAAACAACCGC 58.717 50.000 0.00 0.00 0.00 5.68
3422 3660 4.562963 GGTGGTGTTAAGAGAACGGAAGAT 60.563 45.833 0.00 0.00 0.00 2.40
3426 3664 2.040939 TGGTGGTGTTAAGAGAACGGA 58.959 47.619 0.00 0.00 0.00 4.69
3427 3665 2.140717 GTGGTGGTGTTAAGAGAACGG 58.859 52.381 0.00 0.00 0.00 4.44
3431 3669 1.418637 GGTGGTGGTGGTGTTAAGAGA 59.581 52.381 0.00 0.00 0.00 3.10
3432 3670 1.142060 TGGTGGTGGTGGTGTTAAGAG 59.858 52.381 0.00 0.00 0.00 2.85
3433 3671 1.214217 TGGTGGTGGTGGTGTTAAGA 58.786 50.000 0.00 0.00 0.00 2.10
3437 3675 1.832167 GCATGGTGGTGGTGGTGTT 60.832 57.895 0.00 0.00 0.00 3.32
3438 3676 2.203480 GCATGGTGGTGGTGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
3440 3678 2.115910 CAGCATGGTGGTGGTGGT 59.884 61.111 17.24 0.00 41.77 4.16
3469 3709 4.025401 GCAACAGGGTTGCCGTCG 62.025 66.667 20.30 0.00 39.38 5.12
3484 3724 1.153647 CGGTTATCGTGGCTCAGCA 60.154 57.895 0.00 0.00 0.00 4.41
3500 3740 1.453148 GTAGACGTCGTTTTTCACCGG 59.547 52.381 10.46 0.00 0.00 5.28
3502 3742 3.553105 ACTTGTAGACGTCGTTTTTCACC 59.447 43.478 10.46 0.00 0.00 4.02
3569 3809 0.901580 AAAATGGAGGCAGGGCTGTG 60.902 55.000 0.00 0.00 0.00 3.66
3579 3819 7.947282 TGTTTTTGGTACTCTAAAAATGGAGG 58.053 34.615 14.36 0.00 42.62 4.30
3581 3821 9.191479 TCTTGTTTTTGGTACTCTAAAAATGGA 57.809 29.630 14.36 11.35 42.62 3.41
3638 3880 8.584384 ATCAGGAGATGCGTACAAAATGTACAG 61.584 40.741 17.84 12.32 41.96 2.74
3651 3893 4.207891 AGTACAAAATCAGGAGATGCGT 57.792 40.909 0.00 0.00 33.90 5.24
3654 3896 9.918630 AAAATTCAAGTACAAAATCAGGAGATG 57.081 29.630 0.00 0.00 33.90 2.90
3699 3941 3.254166 ACATGTTGCTCATTTGTCTGTCC 59.746 43.478 0.00 0.00 34.09 4.02
3711 3953 0.040425 ACGGCGAAAACATGTTGCTC 60.040 50.000 16.62 10.97 0.00 4.26
3712 3954 0.040425 GACGGCGAAAACATGTTGCT 60.040 50.000 16.62 2.14 0.00 3.91
3713 3955 1.327292 CGACGGCGAAAACATGTTGC 61.327 55.000 16.62 11.26 40.82 4.17
3714 3956 0.233590 TCGACGGCGAAAACATGTTG 59.766 50.000 13.07 0.48 44.78 3.33
3715 3957 2.607457 TCGACGGCGAAAACATGTT 58.393 47.368 13.07 4.92 44.78 2.71
3716 3958 4.347096 TCGACGGCGAAAACATGT 57.653 50.000 13.07 0.00 44.78 3.21
3725 3967 1.300931 ATCAATGGGATCGACGGCG 60.301 57.895 2.87 2.87 39.35 6.46
3726 3968 0.532862 ACATCAATGGGATCGACGGC 60.533 55.000 0.00 0.00 32.57 5.68
3727 3969 1.867233 GAACATCAATGGGATCGACGG 59.133 52.381 0.00 0.00 32.57 4.79
3728 3970 2.826428 AGAACATCAATGGGATCGACG 58.174 47.619 0.00 0.00 32.57 5.12
3729 3971 5.584649 TGTTAAGAACATCAATGGGATCGAC 59.415 40.000 0.00 0.00 36.25 4.20
3730 3972 5.739959 TGTTAAGAACATCAATGGGATCGA 58.260 37.500 0.00 0.00 36.25 3.59
3764 4006 9.359653 CCCATCCTTTGAAGTATTTCTTGATAT 57.640 33.333 0.00 0.00 36.40 1.63
3765 4007 7.779798 CCCCATCCTTTGAAGTATTTCTTGATA 59.220 37.037 0.00 0.00 36.40 2.15
3766 4008 6.608808 CCCCATCCTTTGAAGTATTTCTTGAT 59.391 38.462 0.00 0.00 36.40 2.57
3767 4009 5.951747 CCCCATCCTTTGAAGTATTTCTTGA 59.048 40.000 0.00 0.00 36.40 3.02
3768 4010 5.716703 ACCCCATCCTTTGAAGTATTTCTTG 59.283 40.000 0.00 0.00 36.40 3.02
3769 4011 5.903923 ACCCCATCCTTTGAAGTATTTCTT 58.096 37.500 0.00 0.00 39.32 2.52
3770 4012 5.536497 ACCCCATCCTTTGAAGTATTTCT 57.464 39.130 0.00 0.00 34.31 2.52
3771 4013 5.127194 GGAACCCCATCCTTTGAAGTATTTC 59.873 44.000 0.00 0.00 36.50 2.17
3772 4014 5.023452 GGAACCCCATCCTTTGAAGTATTT 58.977 41.667 0.00 0.00 36.50 1.40
3773 4015 4.610333 GGAACCCCATCCTTTGAAGTATT 58.390 43.478 0.00 0.00 36.50 1.89
3774 4016 4.251103 GGAACCCCATCCTTTGAAGTAT 57.749 45.455 0.00 0.00 36.50 2.12
3775 4017 3.732048 GGAACCCCATCCTTTGAAGTA 57.268 47.619 0.00 0.00 36.50 2.24
3776 4018 2.604912 GGAACCCCATCCTTTGAAGT 57.395 50.000 0.00 0.00 36.50 3.01
3788 4030 1.895422 GTCCAAAGGAATGGGAACCCC 60.895 57.143 7.47 0.00 40.69 4.95
3789 4031 1.203125 TGTCCAAAGGAATGGGAACCC 60.203 52.381 2.46 2.46 40.69 4.11
3790 4032 2.302587 TGTCCAAAGGAATGGGAACC 57.697 50.000 0.00 0.00 41.60 3.62
3791 4033 2.094026 GCATGTCCAAAGGAATGGGAAC 60.094 50.000 0.00 0.00 41.05 3.62
3792 4034 2.178580 GCATGTCCAAAGGAATGGGAA 58.821 47.619 0.00 0.00 41.05 3.97
3793 4035 1.619432 GGCATGTCCAAAGGAATGGGA 60.619 52.381 0.00 0.00 41.05 4.37
3794 4036 0.826062 GGCATGTCCAAAGGAATGGG 59.174 55.000 0.00 0.00 41.05 4.00
3795 4037 1.559368 TGGCATGTCCAAAGGAATGG 58.441 50.000 6.42 0.00 43.21 3.16
3804 4046 1.361204 TCCTCTTCTTGGCATGTCCA 58.639 50.000 4.93 4.93 44.85 4.02
3805 4047 2.496899 TTCCTCTTCTTGGCATGTCC 57.503 50.000 0.00 0.00 0.00 4.02
3806 4048 4.279420 ACTTTTTCCTCTTCTTGGCATGTC 59.721 41.667 0.00 0.00 0.00 3.06
3807 4049 4.038402 CACTTTTTCCTCTTCTTGGCATGT 59.962 41.667 0.00 0.00 0.00 3.21
3808 4050 4.038402 ACACTTTTTCCTCTTCTTGGCATG 59.962 41.667 0.00 0.00 0.00 4.06
3809 4051 4.218312 ACACTTTTTCCTCTTCTTGGCAT 58.782 39.130 0.00 0.00 0.00 4.40
3810 4052 3.631250 ACACTTTTTCCTCTTCTTGGCA 58.369 40.909 0.00 0.00 0.00 4.92
3811 4053 5.966742 ATACACTTTTTCCTCTTCTTGGC 57.033 39.130 0.00 0.00 0.00 4.52
3812 4054 8.515414 CCTTAATACACTTTTTCCTCTTCTTGG 58.485 37.037 0.00 0.00 0.00 3.61
3813 4055 9.284968 TCCTTAATACACTTTTTCCTCTTCTTG 57.715 33.333 0.00 0.00 0.00 3.02
3814 4056 9.508642 CTCCTTAATACACTTTTTCCTCTTCTT 57.491 33.333 0.00 0.00 0.00 2.52
3815 4057 8.103935 CCTCCTTAATACACTTTTTCCTCTTCT 58.896 37.037 0.00 0.00 0.00 2.85
3816 4058 8.101419 TCCTCCTTAATACACTTTTTCCTCTTC 58.899 37.037 0.00 0.00 0.00 2.87
3817 4059 7.985589 TCCTCCTTAATACACTTTTTCCTCTT 58.014 34.615 0.00 0.00 0.00 2.85
3818 4060 7.237887 ACTCCTCCTTAATACACTTTTTCCTCT 59.762 37.037 0.00 0.00 0.00 3.69
3819 4061 7.395617 ACTCCTCCTTAATACACTTTTTCCTC 58.604 38.462 0.00 0.00 0.00 3.71
3820 4062 7.331089 ACTCCTCCTTAATACACTTTTTCCT 57.669 36.000 0.00 0.00 0.00 3.36
3821 4063 7.094334 CCAACTCCTCCTTAATACACTTTTTCC 60.094 40.741 0.00 0.00 0.00 3.13
3822 4064 7.664318 TCCAACTCCTCCTTAATACACTTTTTC 59.336 37.037 0.00 0.00 0.00 2.29
3823 4065 7.523415 TCCAACTCCTCCTTAATACACTTTTT 58.477 34.615 0.00 0.00 0.00 1.94
3824 4066 7.086685 TCCAACTCCTCCTTAATACACTTTT 57.913 36.000 0.00 0.00 0.00 2.27
3825 4067 6.697641 TCCAACTCCTCCTTAATACACTTT 57.302 37.500 0.00 0.00 0.00 2.66
3826 4068 6.500751 TCTTCCAACTCCTCCTTAATACACTT 59.499 38.462 0.00 0.00 0.00 3.16
3827 4069 6.023603 TCTTCCAACTCCTCCTTAATACACT 58.976 40.000 0.00 0.00 0.00 3.55
3828 4070 6.154706 TCTCTTCCAACTCCTCCTTAATACAC 59.845 42.308 0.00 0.00 0.00 2.90
3829 4071 6.261435 TCTCTTCCAACTCCTCCTTAATACA 58.739 40.000 0.00 0.00 0.00 2.29
3830 4072 6.793505 TCTCTTCCAACTCCTCCTTAATAC 57.206 41.667 0.00 0.00 0.00 1.89
3831 4073 7.623677 TCAATCTCTTCCAACTCCTCCTTAATA 59.376 37.037 0.00 0.00 0.00 0.98
3832 4074 6.445139 TCAATCTCTTCCAACTCCTCCTTAAT 59.555 38.462 0.00 0.00 0.00 1.40
3833 4075 5.785423 TCAATCTCTTCCAACTCCTCCTTAA 59.215 40.000 0.00 0.00 0.00 1.85
3834 4076 5.342017 TCAATCTCTTCCAACTCCTCCTTA 58.658 41.667 0.00 0.00 0.00 2.69
3835 4077 4.171234 TCAATCTCTTCCAACTCCTCCTT 58.829 43.478 0.00 0.00 0.00 3.36
3836 4078 3.774216 CTCAATCTCTTCCAACTCCTCCT 59.226 47.826 0.00 0.00 0.00 3.69
3837 4079 3.772025 TCTCAATCTCTTCCAACTCCTCC 59.228 47.826 0.00 0.00 0.00 4.30
3838 4080 4.709397 TCTCTCAATCTCTTCCAACTCCTC 59.291 45.833 0.00 0.00 0.00 3.71
3839 4081 4.682563 TCTCTCAATCTCTTCCAACTCCT 58.317 43.478 0.00 0.00 0.00 3.69
3840 4082 5.612725 ATCTCTCAATCTCTTCCAACTCC 57.387 43.478 0.00 0.00 0.00 3.85
3841 4083 5.816777 CCAATCTCTCAATCTCTTCCAACTC 59.183 44.000 0.00 0.00 0.00 3.01
3842 4084 5.486775 TCCAATCTCTCAATCTCTTCCAACT 59.513 40.000 0.00 0.00 0.00 3.16
3843 4085 5.738909 TCCAATCTCTCAATCTCTTCCAAC 58.261 41.667 0.00 0.00 0.00 3.77
3844 4086 5.104610 CCTCCAATCTCTCAATCTCTTCCAA 60.105 44.000 0.00 0.00 0.00 3.53
3845 4087 4.408270 CCTCCAATCTCTCAATCTCTTCCA 59.592 45.833 0.00 0.00 0.00 3.53
3846 4088 4.653341 TCCTCCAATCTCTCAATCTCTTCC 59.347 45.833 0.00 0.00 0.00 3.46
3847 4089 5.867903 TCCTCCAATCTCTCAATCTCTTC 57.132 43.478 0.00 0.00 0.00 2.87
3848 4090 6.633325 TTTCCTCCAATCTCTCAATCTCTT 57.367 37.500 0.00 0.00 0.00 2.85
3849 4091 6.633325 TTTTCCTCCAATCTCTCAATCTCT 57.367 37.500 0.00 0.00 0.00 3.10
3850 4092 6.262720 CCATTTTCCTCCAATCTCTCAATCTC 59.737 42.308 0.00 0.00 0.00 2.75
3851 4093 6.069206 TCCATTTTCCTCCAATCTCTCAATCT 60.069 38.462 0.00 0.00 0.00 2.40
3852 4094 6.039159 GTCCATTTTCCTCCAATCTCTCAATC 59.961 42.308 0.00 0.00 0.00 2.67
3853 4095 5.890419 GTCCATTTTCCTCCAATCTCTCAAT 59.110 40.000 0.00 0.00 0.00 2.57
3854 4096 5.222109 TGTCCATTTTCCTCCAATCTCTCAA 60.222 40.000 0.00 0.00 0.00 3.02
3855 4097 4.289410 TGTCCATTTTCCTCCAATCTCTCA 59.711 41.667 0.00 0.00 0.00 3.27
3856 4098 4.637977 GTGTCCATTTTCCTCCAATCTCTC 59.362 45.833 0.00 0.00 0.00 3.20
3857 4099 4.568592 GGTGTCCATTTTCCTCCAATCTCT 60.569 45.833 0.00 0.00 0.00 3.10
3858 4100 3.696548 GGTGTCCATTTTCCTCCAATCTC 59.303 47.826 0.00 0.00 0.00 2.75
3859 4101 3.334881 AGGTGTCCATTTTCCTCCAATCT 59.665 43.478 0.00 0.00 0.00 2.40
3860 4102 3.701664 AGGTGTCCATTTTCCTCCAATC 58.298 45.455 0.00 0.00 0.00 2.67
3861 4103 3.833559 AGGTGTCCATTTTCCTCCAAT 57.166 42.857 0.00 0.00 0.00 3.16
3862 4104 3.117322 TCAAGGTGTCCATTTTCCTCCAA 60.117 43.478 0.00 0.00 0.00 3.53
3863 4105 2.445145 TCAAGGTGTCCATTTTCCTCCA 59.555 45.455 0.00 0.00 0.00 3.86
3864 4106 3.154827 TCAAGGTGTCCATTTTCCTCC 57.845 47.619 0.00 0.00 0.00 4.30
3865 4107 4.397417 CAGATCAAGGTGTCCATTTTCCTC 59.603 45.833 0.00 0.00 0.00 3.71
3866 4108 4.338879 CAGATCAAGGTGTCCATTTTCCT 58.661 43.478 0.00 0.00 0.00 3.36
3867 4109 3.445096 CCAGATCAAGGTGTCCATTTTCC 59.555 47.826 0.00 0.00 0.00 3.13
3868 4110 4.335416 TCCAGATCAAGGTGTCCATTTTC 58.665 43.478 0.00 0.00 0.00 2.29
3869 4111 4.202609 ACTCCAGATCAAGGTGTCCATTTT 60.203 41.667 0.00 0.00 0.00 1.82
3870 4112 3.331889 ACTCCAGATCAAGGTGTCCATTT 59.668 43.478 0.00 0.00 0.00 2.32
3871 4113 2.915604 ACTCCAGATCAAGGTGTCCATT 59.084 45.455 0.00 0.00 0.00 3.16
3872 4114 2.555664 ACTCCAGATCAAGGTGTCCAT 58.444 47.619 0.00 0.00 0.00 3.41
3873 4115 2.030027 ACTCCAGATCAAGGTGTCCA 57.970 50.000 0.00 0.00 0.00 4.02
3874 4116 4.762289 ATAACTCCAGATCAAGGTGTCC 57.238 45.455 10.97 0.00 32.10 4.02
3875 4117 7.055667 TCATATAACTCCAGATCAAGGTGTC 57.944 40.000 10.97 0.00 32.10 3.67
3876 4118 7.437713 TTCATATAACTCCAGATCAAGGTGT 57.562 36.000 0.00 0.65 34.56 4.16
3877 4119 8.737168 TTTTCATATAACTCCAGATCAAGGTG 57.263 34.615 0.00 0.00 0.00 4.00
3905 4147 1.891722 TTCCGAGTTAAGGGCCGTCC 61.892 60.000 0.00 0.00 0.00 4.79
3906 4148 0.738762 GTTCCGAGTTAAGGGCCGTC 60.739 60.000 0.00 0.00 0.00 4.79
3907 4149 1.190178 AGTTCCGAGTTAAGGGCCGT 61.190 55.000 0.00 0.00 0.00 5.68
3908 4150 0.739813 CAGTTCCGAGTTAAGGGCCG 60.740 60.000 0.00 0.00 0.00 6.13
3909 4151 0.611714 TCAGTTCCGAGTTAAGGGCC 59.388 55.000 0.00 0.00 0.00 5.80
3910 4152 2.467566 TTCAGTTCCGAGTTAAGGGC 57.532 50.000 0.00 0.00 0.00 5.19
3911 4153 4.184629 CTCATTCAGTTCCGAGTTAAGGG 58.815 47.826 0.00 0.00 0.00 3.95
3912 4154 3.619038 GCTCATTCAGTTCCGAGTTAAGG 59.381 47.826 0.00 0.00 0.00 2.69
3913 4155 4.499183 AGCTCATTCAGTTCCGAGTTAAG 58.501 43.478 0.00 0.00 0.00 1.85
3914 4156 4.495422 GAGCTCATTCAGTTCCGAGTTAA 58.505 43.478 9.40 0.00 0.00 2.01
3915 4157 3.119101 GGAGCTCATTCAGTTCCGAGTTA 60.119 47.826 17.19 0.00 42.22 2.24
3916 4158 2.354203 GGAGCTCATTCAGTTCCGAGTT 60.354 50.000 17.19 0.00 42.22 3.01
3917 4159 1.205893 GGAGCTCATTCAGTTCCGAGT 59.794 52.381 17.19 0.00 42.22 4.18
3918 4160 1.933247 GGAGCTCATTCAGTTCCGAG 58.067 55.000 17.19 0.00 42.22 4.63
3922 4164 4.134379 TGATCAGGAGCTCATTCAGTTC 57.866 45.455 17.19 2.42 0.00 3.01
3923 4165 4.452825 CATGATCAGGAGCTCATTCAGTT 58.547 43.478 17.19 0.00 28.55 3.16
3924 4166 3.181453 CCATGATCAGGAGCTCATTCAGT 60.181 47.826 17.19 0.00 28.55 3.41
3925 4167 3.071167 TCCATGATCAGGAGCTCATTCAG 59.929 47.826 17.19 4.65 28.55 3.02
3926 4168 3.043418 TCCATGATCAGGAGCTCATTCA 58.957 45.455 17.19 10.71 28.55 2.57
3927 4169 3.766068 TCCATGATCAGGAGCTCATTC 57.234 47.619 17.19 4.46 28.55 2.67
3928 4170 3.715315 TCTTCCATGATCAGGAGCTCATT 59.285 43.478 17.19 0.00 36.33 2.57
3929 4171 3.315596 TCTTCCATGATCAGGAGCTCAT 58.684 45.455 17.19 5.25 36.33 2.90
3930 4172 2.755686 TCTTCCATGATCAGGAGCTCA 58.244 47.619 17.19 0.00 36.33 4.26
3931 4173 3.134442 AGTTCTTCCATGATCAGGAGCTC 59.866 47.826 9.37 4.71 36.33 4.09
3932 4174 3.113824 AGTTCTTCCATGATCAGGAGCT 58.886 45.455 9.37 2.97 36.33 4.09
3933 4175 3.557228 AGTTCTTCCATGATCAGGAGC 57.443 47.619 9.37 0.77 36.33 4.70
3934 4176 6.093771 CAGAAAAGTTCTTCCATGATCAGGAG 59.906 42.308 9.37 0.00 38.11 3.69
3935 4177 5.942236 CAGAAAAGTTCTTCCATGATCAGGA 59.058 40.000 9.37 9.23 38.11 3.86
3936 4178 5.125097 CCAGAAAAGTTCTTCCATGATCAGG 59.875 44.000 0.09 0.00 38.11 3.86
3937 4179 5.709164 ACCAGAAAAGTTCTTCCATGATCAG 59.291 40.000 0.09 0.00 38.11 2.90
3938 4180 5.634118 ACCAGAAAAGTTCTTCCATGATCA 58.366 37.500 0.00 0.00 38.11 2.92
3939 4181 6.581171 AACCAGAAAAGTTCTTCCATGATC 57.419 37.500 0.00 0.00 38.11 2.92
3940 4182 7.004086 TGTAACCAGAAAAGTTCTTCCATGAT 58.996 34.615 0.00 0.00 38.11 2.45
3941 4183 6.361433 TGTAACCAGAAAAGTTCTTCCATGA 58.639 36.000 0.00 0.00 38.11 3.07
3942 4184 6.633500 TGTAACCAGAAAAGTTCTTCCATG 57.367 37.500 0.00 0.00 38.11 3.66
3943 4185 6.605594 TGTTGTAACCAGAAAAGTTCTTCCAT 59.394 34.615 0.00 0.00 38.11 3.41
3944 4186 5.946972 TGTTGTAACCAGAAAAGTTCTTCCA 59.053 36.000 0.00 0.00 38.11 3.53
3945 4187 6.095021 AGTGTTGTAACCAGAAAAGTTCTTCC 59.905 38.462 0.00 0.00 38.11 3.46
3946 4188 7.085052 AGTGTTGTAACCAGAAAAGTTCTTC 57.915 36.000 0.00 0.00 38.11 2.87
3947 4189 6.095021 GGAGTGTTGTAACCAGAAAAGTTCTT 59.905 38.462 0.00 0.00 38.11 2.52
3948 4190 5.589050 GGAGTGTTGTAACCAGAAAAGTTCT 59.411 40.000 0.00 0.00 41.70 3.01
3949 4191 5.355910 TGGAGTGTTGTAACCAGAAAAGTTC 59.644 40.000 0.00 0.00 0.00 3.01
3950 4192 5.258051 TGGAGTGTTGTAACCAGAAAAGTT 58.742 37.500 0.00 0.00 0.00 2.66
3951 4193 4.850680 TGGAGTGTTGTAACCAGAAAAGT 58.149 39.130 0.00 0.00 0.00 2.66
3958 4200 2.484770 GCTCACTGGAGTGTTGTAACCA 60.485 50.000 6.68 0.00 45.76 3.67
3959 4201 2.143925 GCTCACTGGAGTGTTGTAACC 58.856 52.381 6.68 0.00 45.76 2.85
3960 4202 1.792949 CGCTCACTGGAGTGTTGTAAC 59.207 52.381 6.68 0.00 44.75 2.50
3961 4203 2.148916 CGCTCACTGGAGTGTTGTAA 57.851 50.000 6.68 0.00 44.75 2.41
3962 4204 3.886044 CGCTCACTGGAGTGTTGTA 57.114 52.632 6.68 0.00 44.75 2.41
3963 4205 4.758692 CGCTCACTGGAGTGTTGT 57.241 55.556 6.68 0.00 44.75 3.32
3968 4210 0.036952 CAACCATCGCTCACTGGAGT 60.037 55.000 0.00 0.00 43.37 3.85
3969 4211 1.364626 GCAACCATCGCTCACTGGAG 61.365 60.000 0.00 0.00 44.33 3.86
3970 4212 1.375908 GCAACCATCGCTCACTGGA 60.376 57.895 0.00 0.00 36.35 3.86
3971 4213 1.376424 AGCAACCATCGCTCACTGG 60.376 57.895 0.00 0.00 33.35 4.00
3972 4214 4.291047 AGCAACCATCGCTCACTG 57.709 55.556 0.00 0.00 33.35 3.66
3977 4219 0.036732 TCCTTTGAGCAACCATCGCT 59.963 50.000 0.00 0.00 44.10 4.93
3978 4220 0.449388 CTCCTTTGAGCAACCATCGC 59.551 55.000 0.00 0.00 0.00 4.58
3979 4221 1.734465 GTCTCCTTTGAGCAACCATCG 59.266 52.381 0.00 0.00 38.58 3.84
3980 4222 2.087646 GGTCTCCTTTGAGCAACCATC 58.912 52.381 0.00 0.00 36.16 3.51
3981 4223 1.611673 CGGTCTCCTTTGAGCAACCAT 60.612 52.381 0.00 0.00 35.97 3.55
3982 4224 0.250295 CGGTCTCCTTTGAGCAACCA 60.250 55.000 0.00 0.00 35.97 3.67
3983 4225 0.955919 CCGGTCTCCTTTGAGCAACC 60.956 60.000 0.00 0.00 38.58 3.77
3984 4226 0.034896 TCCGGTCTCCTTTGAGCAAC 59.965 55.000 0.00 0.00 38.58 4.17
3985 4227 0.762418 TTCCGGTCTCCTTTGAGCAA 59.238 50.000 0.00 0.00 38.58 3.91
3986 4228 0.034896 GTTCCGGTCTCCTTTGAGCA 59.965 55.000 0.00 0.00 38.58 4.26
3987 4229 0.034896 TGTTCCGGTCTCCTTTGAGC 59.965 55.000 0.00 0.00 38.58 4.26
3988 4230 1.344763 AGTGTTCCGGTCTCCTTTGAG 59.655 52.381 0.00 0.00 40.17 3.02
3989 4231 1.420430 AGTGTTCCGGTCTCCTTTGA 58.580 50.000 0.00 0.00 0.00 2.69
3990 4232 2.612221 GGTAGTGTTCCGGTCTCCTTTG 60.612 54.545 0.00 0.00 0.00 2.77
3991 4233 1.622312 GGTAGTGTTCCGGTCTCCTTT 59.378 52.381 0.00 0.00 0.00 3.11
3992 4234 1.203149 AGGTAGTGTTCCGGTCTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
3993 4235 0.408700 AGGTAGTGTTCCGGTCTCCT 59.591 55.000 0.00 0.00 0.00 3.69
3994 4236 1.264295 AAGGTAGTGTTCCGGTCTCC 58.736 55.000 0.00 0.00 0.00 3.71
3995 4237 3.397849 AAAAGGTAGTGTTCCGGTCTC 57.602 47.619 0.00 0.00 0.00 3.36
3996 4238 3.007290 GGTAAAAGGTAGTGTTCCGGTCT 59.993 47.826 0.00 0.00 0.00 3.85
3997 4239 3.329386 GGTAAAAGGTAGTGTTCCGGTC 58.671 50.000 0.00 0.00 0.00 4.79
3998 4240 3.407424 GGTAAAAGGTAGTGTTCCGGT 57.593 47.619 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.