Multiple sequence alignment - TraesCS7B01G449700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G449700 chr7B 100.000 3059 0 0 1 3059 711746559 711749617 0.000000e+00 5650.0
1 TraesCS7B01G449700 chr7B 94.220 346 16 4 36 378 178720642 178720986 2.700000e-145 525.0
2 TraesCS7B01G449700 chr7B 94.444 36 1 1 2104 2139 439266324 439266358 2.000000e-03 54.7
3 TraesCS7B01G449700 chr7D 95.099 1775 70 9 373 2138 617524575 617526341 0.000000e+00 2780.0
4 TraesCS7B01G449700 chr7D 93.082 795 37 9 2279 3059 617534698 617535488 0.000000e+00 1147.0
5 TraesCS7B01G449700 chr7D 85.714 455 60 4 2159 2610 617295849 617296301 2.760000e-130 475.0
6 TraesCS7B01G449700 chr7A 91.389 1498 95 17 646 2137 711292848 711294317 0.000000e+00 2021.0
7 TraesCS7B01G449700 chr7A 93.878 931 41 10 2144 3059 711294359 711295288 0.000000e+00 1389.0
8 TraesCS7B01G449700 chr7A 88.119 707 61 13 638 1329 711209989 711210687 0.000000e+00 819.0
9 TraesCS7B01G449700 chr7A 88.462 390 40 4 1709 2097 711210749 711211134 1.660000e-127 466.0
10 TraesCS7B01G449700 chr7A 90.265 113 5 2 541 647 711292472 711292584 3.180000e-30 143.0
11 TraesCS7B01G449700 chr7A 84.615 143 20 2 402 543 711291954 711292095 1.140000e-29 141.0
12 TraesCS7B01G449700 chr7A 88.372 86 10 0 2159 2244 711211138 711211223 1.500000e-18 104.0
13 TraesCS7B01G449700 chr3D 96.061 330 13 0 47 376 7428778 7429107 3.470000e-149 538.0
14 TraesCS7B01G449700 chr3D 95.482 332 15 0 43 374 557958046 557958377 5.810000e-147 531.0
15 TraesCS7B01G449700 chr2D 95.732 328 14 0 47 374 252135157 252135484 2.090000e-146 529.0
16 TraesCS7B01G449700 chr4B 95.719 327 14 0 48 374 511028613 511028939 7.510000e-146 527.0
17 TraesCS7B01G449700 chr3B 95.719 327 14 0 48 374 495416873 495417199 7.510000e-146 527.0
18 TraesCS7B01G449700 chr3B 95.195 333 15 1 43 374 591553769 591554101 2.700000e-145 525.0
19 TraesCS7B01G449700 chr3A 94.412 340 18 1 35 374 186359197 186359535 3.500000e-144 521.0
20 TraesCS7B01G449700 chr6B 93.642 346 18 4 36 378 648374014 648373670 5.850000e-142 514.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G449700 chr7B 711746559 711749617 3058 False 5650.0 5650 100.000000 1 3059 1 chr7B.!!$F3 3058
1 TraesCS7B01G449700 chr7D 617524575 617526341 1766 False 2780.0 2780 95.099000 373 2138 1 chr7D.!!$F2 1765
2 TraesCS7B01G449700 chr7D 617534698 617535488 790 False 1147.0 1147 93.082000 2279 3059 1 chr7D.!!$F3 780
3 TraesCS7B01G449700 chr7A 711291954 711295288 3334 False 923.5 2021 90.036750 402 3059 4 chr7A.!!$F2 2657
4 TraesCS7B01G449700 chr7A 711209989 711211223 1234 False 463.0 819 88.317667 638 2244 3 chr7A.!!$F1 1606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 323 1.078823 TCCACCACTCACCATCTACCT 59.921 52.381 0.0 0.0 0.0 3.08 F
981 1658 1.670811 AGTTGTTCGCTCCTGTTTGTG 59.329 47.619 0.0 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 1832 0.321996 GGAGAGCCTTTCCGAAGTGT 59.678 55.0 0.0 0.0 0.0 3.55 R
2574 3290 0.168128 GAGGCGTTGGTATGTGTTGC 59.832 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.769739 ATCAGTGCCGCCAGATTATAA 57.230 42.857 0.00 0.00 0.00 0.98
21 22 3.769739 TCAGTGCCGCCAGATTATAAT 57.230 42.857 0.00 0.00 0.00 1.28
22 23 3.664107 TCAGTGCCGCCAGATTATAATC 58.336 45.455 16.35 16.35 35.64 1.75
23 24 3.070878 TCAGTGCCGCCAGATTATAATCA 59.929 43.478 24.00 2.92 37.89 2.57
24 25 3.814842 CAGTGCCGCCAGATTATAATCAA 59.185 43.478 24.00 1.90 37.89 2.57
25 26 4.456911 CAGTGCCGCCAGATTATAATCAAT 59.543 41.667 24.00 5.00 37.89 2.57
26 27 4.697352 AGTGCCGCCAGATTATAATCAATC 59.303 41.667 24.00 12.48 37.89 2.67
27 28 4.455533 GTGCCGCCAGATTATAATCAATCA 59.544 41.667 24.00 11.58 37.38 2.57
28 29 4.455533 TGCCGCCAGATTATAATCAATCAC 59.544 41.667 24.00 11.26 37.38 3.06
29 30 4.142600 GCCGCCAGATTATAATCAATCACC 60.143 45.833 24.00 7.54 37.38 4.02
30 31 5.003160 CCGCCAGATTATAATCAATCACCA 58.997 41.667 24.00 0.00 37.38 4.17
31 32 5.649395 CCGCCAGATTATAATCAATCACCAT 59.351 40.000 24.00 1.64 37.38 3.55
32 33 6.151648 CCGCCAGATTATAATCAATCACCATT 59.848 38.462 24.00 0.98 37.38 3.16
33 34 7.309377 CCGCCAGATTATAATCAATCACCATTT 60.309 37.037 24.00 0.31 37.38 2.32
34 35 8.729756 CGCCAGATTATAATCAATCACCATTTA 58.270 33.333 24.00 0.00 37.38 1.40
43 44 7.566760 AATCAATCACCATTTAATGCTACGA 57.433 32.000 0.00 0.00 0.00 3.43
44 45 6.358118 TCAATCACCATTTAATGCTACGAC 57.642 37.500 0.00 0.00 0.00 4.34
45 46 5.877564 TCAATCACCATTTAATGCTACGACA 59.122 36.000 0.00 0.00 0.00 4.35
46 47 6.372937 TCAATCACCATTTAATGCTACGACAA 59.627 34.615 0.00 0.00 0.00 3.18
47 48 6.942532 ATCACCATTTAATGCTACGACAAT 57.057 33.333 0.00 0.00 0.00 2.71
48 49 8.341903 CAATCACCATTTAATGCTACGACAATA 58.658 33.333 0.00 0.00 0.00 1.90
49 50 7.241663 TCACCATTTAATGCTACGACAATAC 57.758 36.000 0.00 0.00 0.00 1.89
50 51 7.045416 TCACCATTTAATGCTACGACAATACT 58.955 34.615 0.00 0.00 0.00 2.12
51 52 7.223971 TCACCATTTAATGCTACGACAATACTC 59.776 37.037 0.00 0.00 0.00 2.59
52 53 6.482308 ACCATTTAATGCTACGACAATACTCC 59.518 38.462 0.00 0.00 0.00 3.85
53 54 6.073222 CCATTTAATGCTACGACAATACTCCC 60.073 42.308 0.00 0.00 0.00 4.30
54 55 5.864418 TTAATGCTACGACAATACTCCCT 57.136 39.130 0.00 0.00 0.00 4.20
55 56 4.323553 AATGCTACGACAATACTCCCTC 57.676 45.455 0.00 0.00 0.00 4.30
56 57 2.029623 TGCTACGACAATACTCCCTCC 58.970 52.381 0.00 0.00 0.00 4.30
57 58 2.308690 GCTACGACAATACTCCCTCCT 58.691 52.381 0.00 0.00 0.00 3.69
58 59 2.694109 GCTACGACAATACTCCCTCCTT 59.306 50.000 0.00 0.00 0.00 3.36
59 60 3.132467 GCTACGACAATACTCCCTCCTTT 59.868 47.826 0.00 0.00 0.00 3.11
60 61 3.889520 ACGACAATACTCCCTCCTTTC 57.110 47.619 0.00 0.00 0.00 2.62
61 62 2.500504 ACGACAATACTCCCTCCTTTCC 59.499 50.000 0.00 0.00 0.00 3.13
62 63 2.481449 CGACAATACTCCCTCCTTTCCG 60.481 54.545 0.00 0.00 0.00 4.30
63 64 1.838077 ACAATACTCCCTCCTTTCCGG 59.162 52.381 0.00 0.00 0.00 5.14
64 65 1.838077 CAATACTCCCTCCTTTCCGGT 59.162 52.381 0.00 0.00 0.00 5.28
65 66 2.238898 CAATACTCCCTCCTTTCCGGTT 59.761 50.000 0.00 0.00 0.00 4.44
66 67 2.034436 TACTCCCTCCTTTCCGGTTT 57.966 50.000 0.00 0.00 0.00 3.27
67 68 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
68 69 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
69 70 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
70 71 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
71 72 3.043418 TCCCTCCTTTCCGGTTTATAGG 58.957 50.000 0.00 4.62 0.00 2.57
72 73 2.105993 CCCTCCTTTCCGGTTTATAGGG 59.894 54.545 16.03 16.03 36.05 3.53
73 74 2.486727 CCTCCTTTCCGGTTTATAGGGC 60.487 54.545 0.00 0.00 0.00 5.19
74 75 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
75 76 2.848071 TCCTTTCCGGTTTATAGGGCTT 59.152 45.455 0.00 0.00 0.00 4.35
76 77 4.039339 TCCTTTCCGGTTTATAGGGCTTA 58.961 43.478 0.00 0.00 0.00 3.09
77 78 4.661709 TCCTTTCCGGTTTATAGGGCTTAT 59.338 41.667 0.00 0.00 0.00 1.73
78 79 5.001874 CCTTTCCGGTTTATAGGGCTTATC 58.998 45.833 0.00 0.00 0.00 1.75
79 80 5.221864 CCTTTCCGGTTTATAGGGCTTATCT 60.222 44.000 0.00 0.00 0.00 1.98
80 81 5.479124 TTCCGGTTTATAGGGCTTATCTC 57.521 43.478 0.00 0.00 0.00 2.75
81 82 4.485875 TCCGGTTTATAGGGCTTATCTCA 58.514 43.478 0.00 0.00 0.00 3.27
82 83 4.903049 TCCGGTTTATAGGGCTTATCTCAA 59.097 41.667 0.00 0.00 0.00 3.02
83 84 5.367352 TCCGGTTTATAGGGCTTATCTCAAA 59.633 40.000 0.00 0.00 0.00 2.69
84 85 6.059484 CCGGTTTATAGGGCTTATCTCAAAA 58.941 40.000 0.00 0.00 0.00 2.44
85 86 6.715264 CCGGTTTATAGGGCTTATCTCAAAAT 59.285 38.462 0.00 0.00 0.00 1.82
86 87 7.230712 CCGGTTTATAGGGCTTATCTCAAAATT 59.769 37.037 0.00 0.00 0.00 1.82
87 88 8.630037 CGGTTTATAGGGCTTATCTCAAAATTT 58.370 33.333 0.00 0.00 0.00 1.82
121 122 8.776376 ACATTTTATAAGGCTCAATTTGGTTG 57.224 30.769 0.00 0.00 39.25 3.77
122 123 8.374743 ACATTTTATAAGGCTCAATTTGGTTGT 58.625 29.630 0.00 0.00 38.95 3.32
123 124 9.218440 CATTTTATAAGGCTCAATTTGGTTGTT 57.782 29.630 0.00 0.00 38.95 2.83
124 125 9.791801 ATTTTATAAGGCTCAATTTGGTTGTTT 57.208 25.926 0.00 0.00 38.95 2.83
125 126 8.825667 TTTATAAGGCTCAATTTGGTTGTTTC 57.174 30.769 0.00 0.00 38.95 2.78
126 127 3.751479 AGGCTCAATTTGGTTGTTTCC 57.249 42.857 0.00 0.00 38.95 3.13
127 128 2.368548 AGGCTCAATTTGGTTGTTTCCC 59.631 45.455 0.00 0.00 38.95 3.97
128 129 2.103941 GGCTCAATTTGGTTGTTTCCCA 59.896 45.455 0.00 0.00 38.95 4.37
129 130 3.244526 GGCTCAATTTGGTTGTTTCCCAT 60.245 43.478 0.00 0.00 38.95 4.00
130 131 4.388485 GCTCAATTTGGTTGTTTCCCATT 58.612 39.130 0.00 0.00 38.95 3.16
131 132 5.512232 GGCTCAATTTGGTTGTTTCCCATTA 60.512 40.000 0.00 0.00 38.95 1.90
132 133 5.408299 GCTCAATTTGGTTGTTTCCCATTAC 59.592 40.000 0.00 0.00 38.95 1.89
133 134 6.485830 TCAATTTGGTTGTTTCCCATTACA 57.514 33.333 0.00 0.00 38.95 2.41
134 135 7.072263 TCAATTTGGTTGTTTCCCATTACAT 57.928 32.000 0.00 0.00 38.95 2.29
135 136 6.933521 TCAATTTGGTTGTTTCCCATTACATG 59.066 34.615 0.00 0.00 38.95 3.21
136 137 5.878406 TTTGGTTGTTTCCCATTACATGT 57.122 34.783 2.69 2.69 0.00 3.21
137 138 5.878406 TTGGTTGTTTCCCATTACATGTT 57.122 34.783 2.30 0.00 0.00 2.71
138 139 5.461032 TGGTTGTTTCCCATTACATGTTC 57.539 39.130 2.30 0.00 0.00 3.18
139 140 4.895889 TGGTTGTTTCCCATTACATGTTCA 59.104 37.500 2.30 0.00 0.00 3.18
140 141 5.010516 TGGTTGTTTCCCATTACATGTTCAG 59.989 40.000 2.30 0.00 0.00 3.02
141 142 5.242838 GGTTGTTTCCCATTACATGTTCAGA 59.757 40.000 2.30 0.00 0.00 3.27
142 143 6.071391 GGTTGTTTCCCATTACATGTTCAGAT 60.071 38.462 2.30 0.00 0.00 2.90
143 144 7.378181 GTTGTTTCCCATTACATGTTCAGATT 58.622 34.615 2.30 0.00 0.00 2.40
144 145 7.537596 TGTTTCCCATTACATGTTCAGATTT 57.462 32.000 2.30 0.00 0.00 2.17
145 146 7.601856 TGTTTCCCATTACATGTTCAGATTTC 58.398 34.615 2.30 0.00 0.00 2.17
146 147 7.232330 TGTTTCCCATTACATGTTCAGATTTCA 59.768 33.333 2.30 0.00 0.00 2.69
147 148 7.773489 TTCCCATTACATGTTCAGATTTCAA 57.227 32.000 2.30 0.00 0.00 2.69
148 149 7.395190 TCCCATTACATGTTCAGATTTCAAG 57.605 36.000 2.30 0.00 0.00 3.02
149 150 7.174413 TCCCATTACATGTTCAGATTTCAAGA 58.826 34.615 2.30 0.00 0.00 3.02
150 151 7.835682 TCCCATTACATGTTCAGATTTCAAGAT 59.164 33.333 2.30 0.00 0.00 2.40
151 152 7.919091 CCCATTACATGTTCAGATTTCAAGATG 59.081 37.037 2.30 0.00 31.24 2.90
152 153 8.680001 CCATTACATGTTCAGATTTCAAGATGA 58.320 33.333 2.30 0.00 29.93 2.92
165 166 9.798994 AGATTTCAAGATGAATTAAGTCATTGC 57.201 29.630 18.61 7.97 38.38 3.56
166 167 9.577110 GATTTCAAGATGAATTAAGTCATTGCA 57.423 29.630 18.61 4.01 38.38 4.08
168 169 8.920509 TTCAAGATGAATTAAGTCATTGCATG 57.079 30.769 18.61 14.38 38.38 4.06
169 170 6.976349 TCAAGATGAATTAAGTCATTGCATGC 59.024 34.615 18.61 11.82 38.38 4.06
170 171 6.459670 AGATGAATTAAGTCATTGCATGCA 57.540 33.333 18.46 18.46 38.38 3.96
171 172 6.869695 AGATGAATTAAGTCATTGCATGCAA 58.130 32.000 33.57 33.57 38.38 4.08
172 173 6.978659 AGATGAATTAAGTCATTGCATGCAAG 59.021 34.615 34.15 25.40 38.38 4.01
173 174 6.028146 TGAATTAAGTCATTGCATGCAAGT 57.972 33.333 34.15 20.94 39.47 3.16
174 175 7.155655 TGAATTAAGTCATTGCATGCAAGTA 57.844 32.000 34.15 23.02 39.47 2.24
175 176 7.774134 TGAATTAAGTCATTGCATGCAAGTAT 58.226 30.769 34.15 18.25 39.47 2.12
176 177 8.252417 TGAATTAAGTCATTGCATGCAAGTATT 58.748 29.630 34.15 25.99 39.47 1.89
177 178 9.734620 GAATTAAGTCATTGCATGCAAGTATTA 57.265 29.630 34.15 25.12 39.47 0.98
179 180 9.740239 ATTAAGTCATTGCATGCAAGTATTAAG 57.260 29.630 34.15 18.46 39.47 1.85
180 181 7.395190 AAGTCATTGCATGCAAGTATTAAGA 57.605 32.000 34.15 20.09 39.47 2.10
181 182 7.024340 AGTCATTGCATGCAAGTATTAAGAG 57.976 36.000 34.15 16.39 39.47 2.85
182 183 6.825213 AGTCATTGCATGCAAGTATTAAGAGA 59.175 34.615 34.15 18.04 39.47 3.10
183 184 7.337689 AGTCATTGCATGCAAGTATTAAGAGAA 59.662 33.333 34.15 10.64 39.47 2.87
184 185 7.970061 GTCATTGCATGCAAGTATTAAGAGAAA 59.030 33.333 34.15 10.19 39.47 2.52
185 186 8.522003 TCATTGCATGCAAGTATTAAGAGAAAA 58.478 29.630 34.15 9.52 39.47 2.29
186 187 9.309516 CATTGCATGCAAGTATTAAGAGAAAAT 57.690 29.630 34.15 12.14 39.47 1.82
187 188 9.880157 ATTGCATGCAAGTATTAAGAGAAAATT 57.120 25.926 34.15 11.77 39.47 1.82
188 189 8.692110 TGCATGCAAGTATTAAGAGAAAATTG 57.308 30.769 20.30 0.00 0.00 2.32
189 190 8.522003 TGCATGCAAGTATTAAGAGAAAATTGA 58.478 29.630 20.30 0.00 0.00 2.57
190 191 8.801913 GCATGCAAGTATTAAGAGAAAATTGAC 58.198 33.333 14.21 0.00 0.00 3.18
191 192 9.294030 CATGCAAGTATTAAGAGAAAATTGACC 57.706 33.333 0.00 0.00 0.00 4.02
192 193 8.402798 TGCAAGTATTAAGAGAAAATTGACCA 57.597 30.769 0.00 0.00 0.00 4.02
193 194 8.855110 TGCAAGTATTAAGAGAAAATTGACCAA 58.145 29.630 0.00 0.00 0.00 3.67
194 195 9.860898 GCAAGTATTAAGAGAAAATTGACCAAT 57.139 29.630 0.00 0.00 0.00 3.16
196 197 9.860898 AAGTATTAAGAGAAAATTGACCAATGC 57.139 29.630 0.00 0.00 0.00 3.56
197 198 9.023962 AGTATTAAGAGAAAATTGACCAATGCA 57.976 29.630 0.00 0.00 0.00 3.96
198 199 9.807649 GTATTAAGAGAAAATTGACCAATGCAT 57.192 29.630 0.00 0.00 0.00 3.96
199 200 8.712285 ATTAAGAGAAAATTGACCAATGCATG 57.288 30.769 0.00 0.00 0.00 4.06
200 201 5.733620 AGAGAAAATTGACCAATGCATGT 57.266 34.783 0.00 0.00 0.00 3.21
201 202 6.839124 AGAGAAAATTGACCAATGCATGTA 57.161 33.333 0.00 0.00 0.00 2.29
202 203 6.624423 AGAGAAAATTGACCAATGCATGTAC 58.376 36.000 0.00 0.00 0.00 2.90
203 204 6.435277 AGAGAAAATTGACCAATGCATGTACT 59.565 34.615 0.00 0.00 0.00 2.73
204 205 6.996509 AGAAAATTGACCAATGCATGTACTT 58.003 32.000 0.00 0.00 0.00 2.24
205 206 7.444299 AGAAAATTGACCAATGCATGTACTTT 58.556 30.769 0.00 0.00 0.00 2.66
206 207 8.584157 AGAAAATTGACCAATGCATGTACTTTA 58.416 29.630 0.00 0.00 0.00 1.85
207 208 9.369904 GAAAATTGACCAATGCATGTACTTTAT 57.630 29.630 0.00 0.00 0.00 1.40
208 209 8.706492 AAATTGACCAATGCATGTACTTTATG 57.294 30.769 0.00 0.00 0.00 1.90
237 238 7.485418 CATGCATTGCAATTAATACATTGGT 57.515 32.000 16.46 0.00 43.62 3.67
238 239 8.590719 CATGCATTGCAATTAATACATTGGTA 57.409 30.769 16.46 0.00 43.62 3.25
239 240 9.043079 CATGCATTGCAATTAATACATTGGTAA 57.957 29.630 16.46 0.00 43.62 2.85
240 241 9.610705 ATGCATTGCAATTAATACATTGGTAAA 57.389 25.926 16.46 0.00 43.62 2.01
241 242 8.877779 TGCATTGCAATTAATACATTGGTAAAC 58.122 29.630 9.83 0.00 34.76 2.01
242 243 8.877779 GCATTGCAATTAATACATTGGTAAACA 58.122 29.630 9.83 0.00 35.07 2.83
272 273 8.593492 GTTTTGAGGAAAACAAGAGCATTAAT 57.407 30.769 0.00 0.00 46.97 1.40
273 274 9.045223 GTTTTGAGGAAAACAAGAGCATTAATT 57.955 29.630 0.00 0.00 46.97 1.40
274 275 8.592105 TTTGAGGAAAACAAGAGCATTAATTG 57.408 30.769 0.00 0.00 0.00 2.32
275 276 6.690530 TGAGGAAAACAAGAGCATTAATTGG 58.309 36.000 0.00 0.00 0.00 3.16
276 277 6.041423 AGGAAAACAAGAGCATTAATTGGG 57.959 37.500 0.00 0.00 0.00 4.12
277 278 5.543790 AGGAAAACAAGAGCATTAATTGGGT 59.456 36.000 0.00 0.00 0.00 4.51
278 279 5.639082 GGAAAACAAGAGCATTAATTGGGTG 59.361 40.000 0.00 0.00 0.00 4.61
279 280 3.874392 ACAAGAGCATTAATTGGGTGC 57.126 42.857 4.05 4.05 39.10 5.01
285 286 4.622260 AGCATTAATTGGGTGCTTTTGT 57.378 36.364 7.86 0.00 46.29 2.83
286 287 5.736951 AGCATTAATTGGGTGCTTTTGTA 57.263 34.783 7.86 0.00 46.29 2.41
287 288 6.107901 AGCATTAATTGGGTGCTTTTGTAA 57.892 33.333 7.86 0.00 46.29 2.41
288 289 6.529220 AGCATTAATTGGGTGCTTTTGTAAA 58.471 32.000 7.86 0.00 46.29 2.01
289 290 6.426633 AGCATTAATTGGGTGCTTTTGTAAAC 59.573 34.615 7.86 0.00 46.29 2.01
290 291 6.426633 GCATTAATTGGGTGCTTTTGTAAACT 59.573 34.615 4.80 0.00 36.02 2.66
291 292 7.600752 GCATTAATTGGGTGCTTTTGTAAACTA 59.399 33.333 4.80 0.00 36.02 2.24
292 293 8.921670 CATTAATTGGGTGCTTTTGTAAACTAC 58.078 33.333 0.00 0.00 0.00 2.73
293 294 6.472686 AATTGGGTGCTTTTGTAAACTACA 57.527 33.333 0.00 0.00 36.79 2.74
294 295 5.916661 TTGGGTGCTTTTGTAAACTACAA 57.083 34.783 0.00 0.00 46.13 2.41
308 309 8.749026 TGTAAACTACAAAAAGTATTCCACCA 57.251 30.769 0.00 0.00 35.38 4.17
309 310 8.623030 TGTAAACTACAAAAAGTATTCCACCAC 58.377 33.333 0.00 0.00 35.38 4.16
310 311 7.891498 AAACTACAAAAAGTATTCCACCACT 57.109 32.000 0.00 0.00 30.93 4.00
311 312 7.506328 AACTACAAAAAGTATTCCACCACTC 57.494 36.000 0.00 0.00 30.93 3.51
312 313 6.597562 ACTACAAAAAGTATTCCACCACTCA 58.402 36.000 0.00 0.00 30.93 3.41
313 314 5.767816 ACAAAAAGTATTCCACCACTCAC 57.232 39.130 0.00 0.00 0.00 3.51
314 315 4.583073 ACAAAAAGTATTCCACCACTCACC 59.417 41.667 0.00 0.00 0.00 4.02
315 316 4.447138 AAAAGTATTCCACCACTCACCA 57.553 40.909 0.00 0.00 0.00 4.17
316 317 4.657814 AAAGTATTCCACCACTCACCAT 57.342 40.909 0.00 0.00 0.00 3.55
317 318 3.914426 AGTATTCCACCACTCACCATC 57.086 47.619 0.00 0.00 0.00 3.51
318 319 3.454858 AGTATTCCACCACTCACCATCT 58.545 45.455 0.00 0.00 0.00 2.90
319 320 4.620723 AGTATTCCACCACTCACCATCTA 58.379 43.478 0.00 0.00 0.00 1.98
320 321 3.914426 ATTCCACCACTCACCATCTAC 57.086 47.619 0.00 0.00 0.00 2.59
321 322 1.568504 TCCACCACTCACCATCTACC 58.431 55.000 0.00 0.00 0.00 3.18
322 323 1.078823 TCCACCACTCACCATCTACCT 59.921 52.381 0.00 0.00 0.00 3.08
323 324 1.909302 CCACCACTCACCATCTACCTT 59.091 52.381 0.00 0.00 0.00 3.50
324 325 2.355108 CCACCACTCACCATCTACCTTG 60.355 54.545 0.00 0.00 0.00 3.61
325 326 1.909302 ACCACTCACCATCTACCTTGG 59.091 52.381 0.00 0.00 40.26 3.61
327 328 2.305927 CCACTCACCATCTACCTTGGTT 59.694 50.000 0.00 0.00 45.19 3.67
328 329 3.338249 CACTCACCATCTACCTTGGTTG 58.662 50.000 0.00 0.00 45.19 3.77
329 330 2.305927 ACTCACCATCTACCTTGGTTGG 59.694 50.000 7.30 7.30 45.19 3.77
330 331 2.305927 CTCACCATCTACCTTGGTTGGT 59.694 50.000 8.42 8.42 45.19 3.67
331 332 2.436417 CACCATCTACCTTGGTTGGTG 58.564 52.381 20.88 20.88 45.19 4.17
332 333 2.344592 ACCATCTACCTTGGTTGGTGA 58.655 47.619 14.37 2.56 45.19 4.02
333 334 2.305927 ACCATCTACCTTGGTTGGTGAG 59.694 50.000 14.37 8.18 45.19 3.51
334 335 2.571653 CCATCTACCTTGGTTGGTGAGA 59.428 50.000 14.37 4.26 41.05 3.27
335 336 3.200825 CCATCTACCTTGGTTGGTGAGAT 59.799 47.826 14.37 6.22 41.05 2.75
336 337 4.324563 CCATCTACCTTGGTTGGTGAGATT 60.325 45.833 14.37 0.00 41.05 2.40
337 338 4.993705 TCTACCTTGGTTGGTGAGATTT 57.006 40.909 0.00 0.00 41.05 2.17
338 339 5.319043 TCTACCTTGGTTGGTGAGATTTT 57.681 39.130 0.00 0.00 41.05 1.82
339 340 5.701224 TCTACCTTGGTTGGTGAGATTTTT 58.299 37.500 0.00 0.00 41.05 1.94
340 341 4.670896 ACCTTGGTTGGTGAGATTTTTG 57.329 40.909 0.00 0.00 39.17 2.44
341 342 4.285863 ACCTTGGTTGGTGAGATTTTTGA 58.714 39.130 0.00 0.00 39.17 2.69
342 343 4.714308 ACCTTGGTTGGTGAGATTTTTGAA 59.286 37.500 0.00 0.00 39.17 2.69
343 344 5.366477 ACCTTGGTTGGTGAGATTTTTGAAT 59.634 36.000 0.00 0.00 39.17 2.57
344 345 6.126796 ACCTTGGTTGGTGAGATTTTTGAATT 60.127 34.615 0.00 0.00 39.17 2.17
345 346 7.070571 ACCTTGGTTGGTGAGATTTTTGAATTA 59.929 33.333 0.00 0.00 39.17 1.40
346 347 7.930865 CCTTGGTTGGTGAGATTTTTGAATTAA 59.069 33.333 0.00 0.00 0.00 1.40
347 348 8.885494 TTGGTTGGTGAGATTTTTGAATTAAG 57.115 30.769 0.00 0.00 0.00 1.85
348 349 6.928492 TGGTTGGTGAGATTTTTGAATTAAGC 59.072 34.615 0.00 0.00 0.00 3.09
349 350 6.368791 GGTTGGTGAGATTTTTGAATTAAGCC 59.631 38.462 0.00 0.00 0.00 4.35
350 351 6.036577 TGGTGAGATTTTTGAATTAAGCCC 57.963 37.500 0.00 0.00 0.00 5.19
351 352 5.779771 TGGTGAGATTTTTGAATTAAGCCCT 59.220 36.000 0.00 0.00 0.00 5.19
352 353 6.951198 TGGTGAGATTTTTGAATTAAGCCCTA 59.049 34.615 0.00 0.00 0.00 3.53
353 354 7.619302 TGGTGAGATTTTTGAATTAAGCCCTAT 59.381 33.333 0.00 0.00 0.00 2.57
354 355 9.131791 GGTGAGATTTTTGAATTAAGCCCTATA 57.868 33.333 0.00 0.00 0.00 1.31
361 362 8.887264 TTTTGAATTAAGCCCTATAAACCAGA 57.113 30.769 0.00 0.00 0.00 3.86
362 363 8.887264 TTTGAATTAAGCCCTATAAACCAGAA 57.113 30.769 0.00 0.00 0.00 3.02
363 364 8.887264 TTGAATTAAGCCCTATAAACCAGAAA 57.113 30.769 0.00 0.00 0.00 2.52
364 365 8.519799 TGAATTAAGCCCTATAAACCAGAAAG 57.480 34.615 0.00 0.00 0.00 2.62
365 366 7.559897 TGAATTAAGCCCTATAAACCAGAAAGG 59.440 37.037 0.00 0.00 45.67 3.11
366 367 6.645884 TTAAGCCCTATAAACCAGAAAGGA 57.354 37.500 0.00 0.00 41.22 3.36
367 368 4.779993 AGCCCTATAAACCAGAAAGGAG 57.220 45.455 0.00 0.00 41.22 3.69
368 369 3.459969 AGCCCTATAAACCAGAAAGGAGG 59.540 47.826 0.00 0.00 41.22 4.30
369 370 3.435169 GCCCTATAAACCAGAAAGGAGGG 60.435 52.174 0.00 0.00 45.37 4.30
370 371 4.045022 CCCTATAAACCAGAAAGGAGGGA 58.955 47.826 0.00 0.00 45.41 4.20
371 372 4.103311 CCCTATAAACCAGAAAGGAGGGAG 59.897 50.000 0.00 0.00 45.41 4.30
383 384 2.044252 AGGGAGTAGAGCCGCGAA 60.044 61.111 8.23 0.00 0.00 4.70
422 423 3.268034 TTTTGGGGGAAATTAGCCACT 57.732 42.857 0.13 0.00 0.00 4.00
497 499 6.989759 TCATTTAATGCTACGAAATAGAGCCA 59.010 34.615 0.00 0.00 35.24 4.75
510 512 5.543507 AATAGAGCCACGAGATCAGATTT 57.456 39.130 0.00 0.00 0.00 2.17
524 526 9.096160 CGAGATCAGATTTTGATATAATGGAGG 57.904 37.037 0.00 0.00 46.51 4.30
560 941 7.095523 GGCGATTTAATACCAGCGAAATTAGTA 60.096 37.037 0.00 0.00 0.00 1.82
811 1478 5.921408 AGAAACGTGTGACAAGATAAGAGTC 59.079 40.000 5.34 0.00 0.00 3.36
886 1562 2.893682 ATAAGTTGCCTGCCGAGCCC 62.894 60.000 0.00 0.00 0.00 5.19
981 1658 1.670811 AGTTGTTCGCTCCTGTTTGTG 59.329 47.619 0.00 0.00 0.00 3.33
1164 1841 4.243008 TGGGCGCAACACTTCGGA 62.243 61.111 10.83 0.00 0.00 4.55
1304 1981 1.816074 GCCCTCAATAACGACCACAA 58.184 50.000 0.00 0.00 0.00 3.33
1378 2055 2.844348 AGAAAATACCCAGATCCACCGT 59.156 45.455 0.00 0.00 0.00 4.83
1379 2056 3.265995 AGAAAATACCCAGATCCACCGTT 59.734 43.478 0.00 0.00 0.00 4.44
1527 2204 1.112916 TGATCTCGCTATCGCCCCAA 61.113 55.000 0.00 0.00 35.26 4.12
1600 2277 1.550072 CCGAGGCATTCCAAACCATTT 59.450 47.619 0.00 0.00 33.74 2.32
1601 2278 2.417243 CCGAGGCATTCCAAACCATTTC 60.417 50.000 0.00 0.00 33.74 2.17
1602 2279 2.230992 CGAGGCATTCCAAACCATTTCA 59.769 45.455 0.00 0.00 33.74 2.69
1794 2471 0.171007 CCAACAGCACGGCCTTTATG 59.829 55.000 0.00 0.00 0.00 1.90
1842 2519 0.811616 CCTGCAATACCACTCTCGGC 60.812 60.000 0.00 0.00 0.00 5.54
2004 2681 2.283173 GAGGCCAAAGGTGGGGTG 60.283 66.667 5.01 0.00 46.09 4.61
2114 2793 8.196103 AGCTTTAACTAAATAACTACTCCCTCG 58.804 37.037 0.00 0.00 0.00 4.63
2118 2797 5.764432 ACTAAATAACTACTCCCTCGGTCT 58.236 41.667 0.00 0.00 0.00 3.85
2125 2804 4.145807 ACTACTCCCTCGGTCTCATAATG 58.854 47.826 0.00 0.00 0.00 1.90
2140 2819 6.961554 GTCTCATAATGTAAGAGCGTTTTTGG 59.038 38.462 0.00 0.00 0.00 3.28
2141 2820 6.093495 TCTCATAATGTAAGAGCGTTTTTGGG 59.907 38.462 0.00 0.00 0.00 4.12
2142 2821 5.708230 TCATAATGTAAGAGCGTTTTTGGGT 59.292 36.000 0.00 0.00 0.00 4.51
2189 2903 9.520204 AGTGATGAAATGGAATAAATTAAAGCG 57.480 29.630 0.00 0.00 0.00 4.68
2227 2941 2.047061 ACGCAGGGGCAGAATATAAGA 58.953 47.619 0.00 0.00 41.24 2.10
2366 3080 2.362717 CTCTTCTCCACCCCTCGTTATC 59.637 54.545 0.00 0.00 0.00 1.75
2451 3167 1.043816 GCTCCATTCCTCGATCTCCA 58.956 55.000 0.00 0.00 0.00 3.86
2456 3172 2.549563 CCATTCCTCGATCTCCACCATG 60.550 54.545 0.00 0.00 0.00 3.66
2533 3249 2.095263 GCTACTGTAAACGTACCACCGA 60.095 50.000 0.00 0.00 0.00 4.69
2574 3290 1.539827 GACCACATGGGAAGAAAACGG 59.460 52.381 0.00 0.00 41.15 4.44
2626 3343 0.736325 CTTCCGACCCACGACATGAC 60.736 60.000 0.00 0.00 45.77 3.06
2630 3347 0.099968 CGACCCACGACATGACGTAT 59.900 55.000 21.99 11.29 44.76 3.06
2675 3392 0.098025 ACGACGGTTTTTGCACACAG 59.902 50.000 0.00 0.00 0.00 3.66
2808 3525 0.040692 GCATGTGACGGCATAGCATG 60.041 55.000 14.38 14.38 39.68 4.06
2889 3606 3.087906 GGTGTCTATGGCGGGGGT 61.088 66.667 0.00 0.00 0.00 4.95
2951 3668 0.460311 GCATGTGCTACTCGGTAGGT 59.540 55.000 11.46 0.00 36.71 3.08
2962 3679 1.346722 CTCGGTAGGTGGAAGTGGTTT 59.653 52.381 0.00 0.00 0.00 3.27
2964 3681 1.244816 GGTAGGTGGAAGTGGTTTGC 58.755 55.000 0.00 0.00 0.00 3.68
2965 3682 1.477923 GGTAGGTGGAAGTGGTTTGCA 60.478 52.381 0.00 0.00 34.45 4.08
2966 3683 1.880027 GTAGGTGGAAGTGGTTTGCAG 59.120 52.381 0.00 0.00 37.84 4.41
2968 3685 2.419057 GTGGAAGTGGTTTGCAGCT 58.581 52.632 0.00 0.00 37.84 4.24
2969 3686 0.312102 GTGGAAGTGGTTTGCAGCTC 59.688 55.000 0.00 0.00 37.84 4.09
2970 3687 0.183492 TGGAAGTGGTTTGCAGCTCT 59.817 50.000 0.00 0.00 31.59 4.09
2971 3688 1.419762 TGGAAGTGGTTTGCAGCTCTA 59.580 47.619 0.00 0.00 31.59 2.43
2974 3691 1.512926 AGTGGTTTGCAGCTCTAACG 58.487 50.000 0.00 0.00 32.38 3.18
2975 3692 0.110192 GTGGTTTGCAGCTCTAACGC 60.110 55.000 0.00 0.00 32.38 4.84
2976 3693 0.533978 TGGTTTGCAGCTCTAACGCA 60.534 50.000 0.00 0.00 32.38 5.24
2977 3694 0.110192 GGTTTGCAGCTCTAACGCAC 60.110 55.000 0.00 0.00 34.87 5.34
2992 3721 2.113139 CACAGGGTTGAACGGCCT 59.887 61.111 0.00 0.00 0.00 5.19
3041 3770 0.400525 TGGGGATCTGGCCTTCTAGG 60.401 60.000 3.32 0.00 38.80 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.769739 TTATAATCTGGCGGCACTGAT 57.230 42.857 7.97 7.85 0.00 2.90
2 3 3.402110 TGATTATAATCTGGCGGCACTG 58.598 45.455 22.77 0.00 36.39 3.66
3 4 3.769739 TGATTATAATCTGGCGGCACT 57.230 42.857 22.77 0.00 36.39 4.40
4 5 4.455533 TGATTGATTATAATCTGGCGGCAC 59.544 41.667 22.77 0.00 37.81 5.01
5 6 4.455533 GTGATTGATTATAATCTGGCGGCA 59.544 41.667 22.77 12.58 37.81 5.69
8 9 6.748333 ATGGTGATTGATTATAATCTGGCG 57.252 37.500 22.77 0.00 37.81 5.69
17 18 9.283768 TCGTAGCATTAAATGGTGATTGATTAT 57.716 29.630 0.00 0.00 41.73 1.28
18 19 8.556194 GTCGTAGCATTAAATGGTGATTGATTA 58.444 33.333 0.00 0.00 41.73 1.75
19 20 7.066887 TGTCGTAGCATTAAATGGTGATTGATT 59.933 33.333 0.00 0.00 41.73 2.57
20 21 6.542005 TGTCGTAGCATTAAATGGTGATTGAT 59.458 34.615 0.00 0.00 41.73 2.57
21 22 5.877564 TGTCGTAGCATTAAATGGTGATTGA 59.122 36.000 0.00 0.00 41.73 2.57
22 23 6.117911 TGTCGTAGCATTAAATGGTGATTG 57.882 37.500 0.00 0.00 41.73 2.67
23 24 6.751514 TTGTCGTAGCATTAAATGGTGATT 57.248 33.333 0.00 0.00 41.73 2.57
24 25 6.942532 ATTGTCGTAGCATTAAATGGTGAT 57.057 33.333 0.00 0.00 41.73 3.06
25 26 7.045416 AGTATTGTCGTAGCATTAAATGGTGA 58.955 34.615 0.00 0.00 41.73 4.02
26 27 7.246674 AGTATTGTCGTAGCATTAAATGGTG 57.753 36.000 0.00 0.00 41.73 4.17
27 28 6.482308 GGAGTATTGTCGTAGCATTAAATGGT 59.518 38.462 0.00 0.00 44.27 3.55
28 29 6.073222 GGGAGTATTGTCGTAGCATTAAATGG 60.073 42.308 0.00 0.00 0.00 3.16
29 30 6.706270 AGGGAGTATTGTCGTAGCATTAAATG 59.294 38.462 0.00 0.00 0.00 2.32
30 31 6.827727 AGGGAGTATTGTCGTAGCATTAAAT 58.172 36.000 0.00 0.00 0.00 1.40
31 32 6.229936 AGGGAGTATTGTCGTAGCATTAAA 57.770 37.500 0.00 0.00 0.00 1.52
32 33 5.221382 GGAGGGAGTATTGTCGTAGCATTAA 60.221 44.000 0.00 0.00 0.00 1.40
33 34 4.280174 GGAGGGAGTATTGTCGTAGCATTA 59.720 45.833 0.00 0.00 0.00 1.90
34 35 3.069729 GGAGGGAGTATTGTCGTAGCATT 59.930 47.826 0.00 0.00 0.00 3.56
35 36 2.628657 GGAGGGAGTATTGTCGTAGCAT 59.371 50.000 0.00 0.00 0.00 3.79
36 37 2.029623 GGAGGGAGTATTGTCGTAGCA 58.970 52.381 0.00 0.00 0.00 3.49
37 38 2.308690 AGGAGGGAGTATTGTCGTAGC 58.691 52.381 0.00 0.00 0.00 3.58
38 39 4.202131 GGAAAGGAGGGAGTATTGTCGTAG 60.202 50.000 0.00 0.00 0.00 3.51
39 40 3.703052 GGAAAGGAGGGAGTATTGTCGTA 59.297 47.826 0.00 0.00 0.00 3.43
40 41 2.500504 GGAAAGGAGGGAGTATTGTCGT 59.499 50.000 0.00 0.00 0.00 4.34
41 42 2.481449 CGGAAAGGAGGGAGTATTGTCG 60.481 54.545 0.00 0.00 0.00 4.35
42 43 2.158943 CCGGAAAGGAGGGAGTATTGTC 60.159 54.545 0.00 0.00 45.00 3.18
43 44 1.838077 CCGGAAAGGAGGGAGTATTGT 59.162 52.381 0.00 0.00 45.00 2.71
44 45 1.838077 ACCGGAAAGGAGGGAGTATTG 59.162 52.381 9.46 0.00 45.00 1.90
45 46 2.265526 ACCGGAAAGGAGGGAGTATT 57.734 50.000 9.46 0.00 45.00 1.89
46 47 2.265526 AACCGGAAAGGAGGGAGTAT 57.734 50.000 9.46 0.00 45.00 2.12
47 48 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
48 49 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
49 50 3.071167 CCTATAAACCGGAAAGGAGGGAG 59.929 52.174 9.46 0.00 45.00 4.30
50 51 3.043418 CCTATAAACCGGAAAGGAGGGA 58.957 50.000 9.46 0.00 45.00 4.20
51 52 2.105993 CCCTATAAACCGGAAAGGAGGG 59.894 54.545 9.46 14.71 45.00 4.30
52 53 2.486727 GCCCTATAAACCGGAAAGGAGG 60.487 54.545 9.46 9.03 45.00 4.30
53 54 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
54 55 2.484602 AGCCCTATAAACCGGAAAGGA 58.515 47.619 9.46 0.00 45.00 3.36
56 57 5.866207 AGATAAGCCCTATAAACCGGAAAG 58.134 41.667 9.46 0.00 0.00 2.62
57 58 5.367352 TGAGATAAGCCCTATAAACCGGAAA 59.633 40.000 9.46 0.00 0.00 3.13
58 59 4.903049 TGAGATAAGCCCTATAAACCGGAA 59.097 41.667 9.46 0.00 0.00 4.30
59 60 4.485875 TGAGATAAGCCCTATAAACCGGA 58.514 43.478 9.46 0.00 0.00 5.14
60 61 4.884668 TGAGATAAGCCCTATAAACCGG 57.115 45.455 0.00 0.00 0.00 5.28
61 62 7.745620 ATTTTGAGATAAGCCCTATAAACCG 57.254 36.000 0.00 0.00 0.00 4.44
95 96 9.868277 CAACCAAATTGAGCCTTATAAAATGTA 57.132 29.630 0.00 0.00 41.23 2.29
96 97 8.374743 ACAACCAAATTGAGCCTTATAAAATGT 58.625 29.630 0.00 0.00 41.23 2.71
97 98 8.776376 ACAACCAAATTGAGCCTTATAAAATG 57.224 30.769 0.00 0.00 41.23 2.32
98 99 9.791801 AAACAACCAAATTGAGCCTTATAAAAT 57.208 25.926 0.00 0.00 41.23 1.82
99 100 9.267084 GAAACAACCAAATTGAGCCTTATAAAA 57.733 29.630 0.00 0.00 41.23 1.52
100 101 7.875554 GGAAACAACCAAATTGAGCCTTATAAA 59.124 33.333 0.00 0.00 41.23 1.40
101 102 7.382898 GGAAACAACCAAATTGAGCCTTATAA 58.617 34.615 0.00 0.00 41.23 0.98
102 103 6.071051 GGGAAACAACCAAATTGAGCCTTATA 60.071 38.462 0.00 0.00 41.23 0.98
103 104 5.279960 GGGAAACAACCAAATTGAGCCTTAT 60.280 40.000 0.00 0.00 41.23 1.73
104 105 4.039852 GGGAAACAACCAAATTGAGCCTTA 59.960 41.667 0.00 0.00 41.23 2.69
105 106 3.181455 GGGAAACAACCAAATTGAGCCTT 60.181 43.478 0.00 0.00 41.23 4.35
106 107 2.368548 GGGAAACAACCAAATTGAGCCT 59.631 45.455 0.00 0.00 41.23 4.58
107 108 2.103941 TGGGAAACAACCAAATTGAGCC 59.896 45.455 0.00 0.00 41.23 4.70
108 109 3.467374 TGGGAAACAACCAAATTGAGC 57.533 42.857 0.00 0.00 41.23 4.26
109 110 6.520272 TGTAATGGGAAACAACCAAATTGAG 58.480 36.000 0.00 0.00 42.17 3.02
110 111 6.485830 TGTAATGGGAAACAACCAAATTGA 57.514 33.333 0.00 0.00 42.17 2.57
111 112 7.131498 CATGTAATGGGAAACAACCAAATTG 57.869 36.000 0.00 0.00 41.79 2.32
139 140 9.798994 GCAATGACTTAATTCATCTTGAAATCT 57.201 29.630 8.59 0.00 40.12 2.40
140 141 9.577110 TGCAATGACTTAATTCATCTTGAAATC 57.423 29.630 8.59 0.00 40.12 2.17
161 162 9.880157 AATTTTCTCTTAATACTTGCATGCAAT 57.120 25.926 31.96 22.79 35.20 3.56
162 163 9.142515 CAATTTTCTCTTAATACTTGCATGCAA 57.857 29.630 30.12 30.12 0.00 4.08
163 164 8.522003 TCAATTTTCTCTTAATACTTGCATGCA 58.478 29.630 18.46 18.46 0.00 3.96
164 165 8.801913 GTCAATTTTCTCTTAATACTTGCATGC 58.198 33.333 11.82 11.82 0.00 4.06
165 166 9.294030 GGTCAATTTTCTCTTAATACTTGCATG 57.706 33.333 0.00 0.00 0.00 4.06
166 167 9.023962 TGGTCAATTTTCTCTTAATACTTGCAT 57.976 29.630 0.00 0.00 0.00 3.96
167 168 8.402798 TGGTCAATTTTCTCTTAATACTTGCA 57.597 30.769 0.00 0.00 0.00 4.08
168 169 9.860898 ATTGGTCAATTTTCTCTTAATACTTGC 57.139 29.630 0.00 0.00 0.00 4.01
170 171 9.860898 GCATTGGTCAATTTTCTCTTAATACTT 57.139 29.630 0.00 0.00 0.00 2.24
171 172 9.023962 TGCATTGGTCAATTTTCTCTTAATACT 57.976 29.630 0.00 0.00 0.00 2.12
172 173 9.807649 ATGCATTGGTCAATTTTCTCTTAATAC 57.192 29.630 0.00 0.00 0.00 1.89
173 174 9.806203 CATGCATTGGTCAATTTTCTCTTAATA 57.194 29.630 0.00 0.00 0.00 0.98
174 175 8.316214 ACATGCATTGGTCAATTTTCTCTTAAT 58.684 29.630 0.00 0.00 0.00 1.40
175 176 7.669427 ACATGCATTGGTCAATTTTCTCTTAA 58.331 30.769 0.00 0.00 0.00 1.85
176 177 7.230849 ACATGCATTGGTCAATTTTCTCTTA 57.769 32.000 0.00 0.00 0.00 2.10
177 178 6.105397 ACATGCATTGGTCAATTTTCTCTT 57.895 33.333 0.00 0.00 0.00 2.85
178 179 5.733620 ACATGCATTGGTCAATTTTCTCT 57.266 34.783 0.00 0.00 0.00 3.10
179 180 6.624423 AGTACATGCATTGGTCAATTTTCTC 58.376 36.000 0.00 0.00 0.00 2.87
180 181 6.594788 AGTACATGCATTGGTCAATTTTCT 57.405 33.333 0.00 0.00 0.00 2.52
181 182 7.656707 AAAGTACATGCATTGGTCAATTTTC 57.343 32.000 0.00 0.00 0.00 2.29
182 183 9.153721 CATAAAGTACATGCATTGGTCAATTTT 57.846 29.630 0.00 0.00 0.00 1.82
183 184 7.278424 GCATAAAGTACATGCATTGGTCAATTT 59.722 33.333 10.82 0.00 46.47 1.82
184 185 6.757947 GCATAAAGTACATGCATTGGTCAATT 59.242 34.615 10.82 0.00 46.47 2.32
185 186 6.275335 GCATAAAGTACATGCATTGGTCAAT 58.725 36.000 10.82 0.00 46.47 2.57
186 187 5.649557 GCATAAAGTACATGCATTGGTCAA 58.350 37.500 10.82 0.00 46.47 3.18
187 188 5.247507 GCATAAAGTACATGCATTGGTCA 57.752 39.130 10.82 0.00 46.47 4.02
213 214 7.485418 ACCAATGTATTAATTGCAATGCATG 57.515 32.000 13.82 0.00 39.41 4.06
214 215 9.610705 TTTACCAATGTATTAATTGCAATGCAT 57.389 25.926 13.82 10.48 41.27 3.96
215 216 8.877779 GTTTACCAATGTATTAATTGCAATGCA 58.122 29.630 13.82 2.72 36.42 3.96
216 217 8.877779 TGTTTACCAATGTATTAATTGCAATGC 58.122 29.630 13.82 0.00 36.42 3.56
248 249 9.044150 CAATTAATGCTCTTGTTTTCCTCAAAA 57.956 29.630 0.00 0.00 0.00 2.44
249 250 7.656948 CCAATTAATGCTCTTGTTTTCCTCAAA 59.343 33.333 0.00 0.00 0.00 2.69
250 251 7.153985 CCAATTAATGCTCTTGTTTTCCTCAA 58.846 34.615 0.00 0.00 0.00 3.02
251 252 6.295236 CCCAATTAATGCTCTTGTTTTCCTCA 60.295 38.462 0.00 0.00 0.00 3.86
252 253 6.101997 CCCAATTAATGCTCTTGTTTTCCTC 58.898 40.000 0.00 0.00 0.00 3.71
253 254 5.543790 ACCCAATTAATGCTCTTGTTTTCCT 59.456 36.000 0.00 0.00 0.00 3.36
254 255 5.639082 CACCCAATTAATGCTCTTGTTTTCC 59.361 40.000 0.00 0.00 0.00 3.13
255 256 5.120674 GCACCCAATTAATGCTCTTGTTTTC 59.879 40.000 0.00 0.00 36.40 2.29
256 257 4.996758 GCACCCAATTAATGCTCTTGTTTT 59.003 37.500 0.00 0.00 36.40 2.43
257 258 4.284234 AGCACCCAATTAATGCTCTTGTTT 59.716 37.500 4.81 0.00 46.68 2.83
258 259 3.834231 AGCACCCAATTAATGCTCTTGTT 59.166 39.130 4.81 0.00 46.68 2.83
259 260 3.434309 AGCACCCAATTAATGCTCTTGT 58.566 40.909 4.81 0.00 46.68 3.16
265 266 6.426633 AGTTTACAAAAGCACCCAATTAATGC 59.573 34.615 0.00 0.60 39.74 3.56
266 267 7.961325 AGTTTACAAAAGCACCCAATTAATG 57.039 32.000 0.00 0.00 0.00 1.90
267 268 8.643324 TGTAGTTTACAAAAGCACCCAATTAAT 58.357 29.630 0.00 0.00 35.38 1.40
268 269 8.008513 TGTAGTTTACAAAAGCACCCAATTAA 57.991 30.769 0.00 0.00 35.38 1.40
269 270 7.584122 TGTAGTTTACAAAAGCACCCAATTA 57.416 32.000 0.00 0.00 35.38 1.40
270 271 6.472686 TGTAGTTTACAAAAGCACCCAATT 57.527 33.333 0.00 0.00 35.38 2.32
271 272 6.472686 TTGTAGTTTACAAAAGCACCCAAT 57.527 33.333 0.00 0.00 44.95 3.16
272 273 5.916661 TTGTAGTTTACAAAAGCACCCAA 57.083 34.783 0.00 0.00 44.95 4.12
282 283 9.186837 TGGTGGAATACTTTTTGTAGTTTACAA 57.813 29.630 0.00 0.00 46.13 2.41
283 284 8.623030 GTGGTGGAATACTTTTTGTAGTTTACA 58.377 33.333 0.00 0.00 34.24 2.41
284 285 8.843262 AGTGGTGGAATACTTTTTGTAGTTTAC 58.157 33.333 0.00 0.00 34.24 2.01
285 286 8.983702 AGTGGTGGAATACTTTTTGTAGTTTA 57.016 30.769 0.00 0.00 34.24 2.01
286 287 7.558444 TGAGTGGTGGAATACTTTTTGTAGTTT 59.442 33.333 0.00 0.00 34.24 2.66
287 288 7.012989 GTGAGTGGTGGAATACTTTTTGTAGTT 59.987 37.037 0.00 0.00 34.24 2.24
288 289 6.485648 GTGAGTGGTGGAATACTTTTTGTAGT 59.514 38.462 0.00 0.00 34.24 2.73
289 290 6.072673 GGTGAGTGGTGGAATACTTTTTGTAG 60.073 42.308 0.00 0.00 34.24 2.74
290 291 5.766174 GGTGAGTGGTGGAATACTTTTTGTA 59.234 40.000 0.00 0.00 35.37 2.41
291 292 4.583073 GGTGAGTGGTGGAATACTTTTTGT 59.417 41.667 0.00 0.00 0.00 2.83
292 293 4.582656 TGGTGAGTGGTGGAATACTTTTTG 59.417 41.667 0.00 0.00 0.00 2.44
293 294 4.798882 TGGTGAGTGGTGGAATACTTTTT 58.201 39.130 0.00 0.00 0.00 1.94
294 295 4.447138 TGGTGAGTGGTGGAATACTTTT 57.553 40.909 0.00 0.00 0.00 2.27
295 296 4.289672 AGATGGTGAGTGGTGGAATACTTT 59.710 41.667 0.00 0.00 0.00 2.66
296 297 3.846588 AGATGGTGAGTGGTGGAATACTT 59.153 43.478 0.00 0.00 0.00 2.24
297 298 3.454858 AGATGGTGAGTGGTGGAATACT 58.545 45.455 0.00 0.00 0.00 2.12
298 299 3.914426 AGATGGTGAGTGGTGGAATAC 57.086 47.619 0.00 0.00 0.00 1.89
299 300 3.709653 GGTAGATGGTGAGTGGTGGAATA 59.290 47.826 0.00 0.00 0.00 1.75
300 301 2.505819 GGTAGATGGTGAGTGGTGGAAT 59.494 50.000 0.00 0.00 0.00 3.01
301 302 1.906574 GGTAGATGGTGAGTGGTGGAA 59.093 52.381 0.00 0.00 0.00 3.53
302 303 1.078823 AGGTAGATGGTGAGTGGTGGA 59.921 52.381 0.00 0.00 0.00 4.02
303 304 1.573108 AGGTAGATGGTGAGTGGTGG 58.427 55.000 0.00 0.00 0.00 4.61
304 305 2.355108 CCAAGGTAGATGGTGAGTGGTG 60.355 54.545 0.00 0.00 33.08 4.17
305 306 1.909302 CCAAGGTAGATGGTGAGTGGT 59.091 52.381 0.00 0.00 33.08 4.16
306 307 2.698855 CCAAGGTAGATGGTGAGTGG 57.301 55.000 0.00 0.00 33.08 4.00
313 314 2.571653 TCTCACCAACCAAGGTAGATGG 59.428 50.000 6.86 6.86 40.77 3.51
314 315 3.981071 TCTCACCAACCAAGGTAGATG 57.019 47.619 0.00 0.00 40.77 2.90
315 316 5.520748 AAATCTCACCAACCAAGGTAGAT 57.479 39.130 0.00 0.00 40.77 1.98
316 317 4.993705 AAATCTCACCAACCAAGGTAGA 57.006 40.909 0.00 0.00 40.77 2.59
317 318 5.534654 TCAAAAATCTCACCAACCAAGGTAG 59.465 40.000 0.00 0.00 40.77 3.18
318 319 5.450453 TCAAAAATCTCACCAACCAAGGTA 58.550 37.500 0.00 0.00 40.77 3.08
319 320 4.285863 TCAAAAATCTCACCAACCAAGGT 58.714 39.130 0.00 0.00 44.48 3.50
320 321 4.935352 TCAAAAATCTCACCAACCAAGG 57.065 40.909 0.00 0.00 0.00 3.61
321 322 8.885494 TTAATTCAAAAATCTCACCAACCAAG 57.115 30.769 0.00 0.00 0.00 3.61
322 323 7.440856 GCTTAATTCAAAAATCTCACCAACCAA 59.559 33.333 0.00 0.00 0.00 3.67
323 324 6.928492 GCTTAATTCAAAAATCTCACCAACCA 59.072 34.615 0.00 0.00 0.00 3.67
324 325 6.368791 GGCTTAATTCAAAAATCTCACCAACC 59.631 38.462 0.00 0.00 0.00 3.77
325 326 6.368791 GGGCTTAATTCAAAAATCTCACCAAC 59.631 38.462 0.00 0.00 0.00 3.77
326 327 6.269769 AGGGCTTAATTCAAAAATCTCACCAA 59.730 34.615 0.00 0.00 0.00 3.67
327 328 5.779771 AGGGCTTAATTCAAAAATCTCACCA 59.220 36.000 0.00 0.00 0.00 4.17
328 329 6.286240 AGGGCTTAATTCAAAAATCTCACC 57.714 37.500 0.00 0.00 0.00 4.02
335 336 9.315363 TCTGGTTTATAGGGCTTAATTCAAAAA 57.685 29.630 0.00 0.00 0.00 1.94
336 337 8.887264 TCTGGTTTATAGGGCTTAATTCAAAA 57.113 30.769 0.00 0.00 0.00 2.44
337 338 8.887264 TTCTGGTTTATAGGGCTTAATTCAAA 57.113 30.769 0.00 0.00 0.00 2.69
338 339 8.887264 TTTCTGGTTTATAGGGCTTAATTCAA 57.113 30.769 0.00 0.00 0.00 2.69
339 340 7.559897 CCTTTCTGGTTTATAGGGCTTAATTCA 59.440 37.037 0.00 0.00 0.00 2.57
340 341 7.778382 TCCTTTCTGGTTTATAGGGCTTAATTC 59.222 37.037 0.00 0.00 37.07 2.17
341 342 7.648770 TCCTTTCTGGTTTATAGGGCTTAATT 58.351 34.615 0.00 0.00 37.07 1.40
342 343 7.220890 TCCTTTCTGGTTTATAGGGCTTAAT 57.779 36.000 0.00 0.00 37.07 1.40
343 344 6.353602 CCTCCTTTCTGGTTTATAGGGCTTAA 60.354 42.308 0.00 0.00 37.07 1.85
344 345 5.132144 CCTCCTTTCTGGTTTATAGGGCTTA 59.868 44.000 0.00 0.00 37.07 3.09
345 346 4.079730 CCTCCTTTCTGGTTTATAGGGCTT 60.080 45.833 0.00 0.00 37.07 4.35
346 347 3.459969 CCTCCTTTCTGGTTTATAGGGCT 59.540 47.826 0.00 0.00 37.07 5.19
347 348 3.435169 CCCTCCTTTCTGGTTTATAGGGC 60.435 52.174 0.00 0.00 37.92 5.19
348 349 4.045022 TCCCTCCTTTCTGGTTTATAGGG 58.955 47.826 0.00 0.00 43.08 3.53
349 350 4.722279 ACTCCCTCCTTTCTGGTTTATAGG 59.278 45.833 0.00 0.00 37.07 2.57
350 351 5.959583 ACTCCCTCCTTTCTGGTTTATAG 57.040 43.478 0.00 0.00 37.07 1.31
351 352 6.748969 TCTACTCCCTCCTTTCTGGTTTATA 58.251 40.000 0.00 0.00 37.07 0.98
352 353 5.600749 TCTACTCCCTCCTTTCTGGTTTAT 58.399 41.667 0.00 0.00 37.07 1.40
353 354 5.019657 TCTACTCCCTCCTTTCTGGTTTA 57.980 43.478 0.00 0.00 37.07 2.01
354 355 3.841255 CTCTACTCCCTCCTTTCTGGTTT 59.159 47.826 0.00 0.00 37.07 3.27
355 356 3.445987 CTCTACTCCCTCCTTTCTGGTT 58.554 50.000 0.00 0.00 37.07 3.67
356 357 2.890602 GCTCTACTCCCTCCTTTCTGGT 60.891 54.545 0.00 0.00 37.07 4.00
357 358 1.760029 GCTCTACTCCCTCCTTTCTGG 59.240 57.143 0.00 0.00 37.10 3.86
358 359 1.760029 GGCTCTACTCCCTCCTTTCTG 59.240 57.143 0.00 0.00 0.00 3.02
359 360 1.686741 CGGCTCTACTCCCTCCTTTCT 60.687 57.143 0.00 0.00 0.00 2.52
360 361 0.747852 CGGCTCTACTCCCTCCTTTC 59.252 60.000 0.00 0.00 0.00 2.62
361 362 1.331399 GCGGCTCTACTCCCTCCTTT 61.331 60.000 0.00 0.00 0.00 3.11
362 363 1.758906 GCGGCTCTACTCCCTCCTT 60.759 63.158 0.00 0.00 0.00 3.36
363 364 2.123640 GCGGCTCTACTCCCTCCT 60.124 66.667 0.00 0.00 0.00 3.69
364 365 3.597728 CGCGGCTCTACTCCCTCC 61.598 72.222 0.00 0.00 0.00 4.30
365 366 1.664321 TTTCGCGGCTCTACTCCCTC 61.664 60.000 6.13 0.00 0.00 4.30
366 367 1.043673 ATTTCGCGGCTCTACTCCCT 61.044 55.000 6.13 0.00 0.00 4.20
367 368 0.597898 GATTTCGCGGCTCTACTCCC 60.598 60.000 6.13 0.00 0.00 4.30
368 369 0.597898 GGATTTCGCGGCTCTACTCC 60.598 60.000 6.13 0.00 0.00 3.85
369 370 0.935366 CGGATTTCGCGGCTCTACTC 60.935 60.000 6.13 0.00 0.00 2.59
370 371 1.065928 CGGATTTCGCGGCTCTACT 59.934 57.895 6.13 0.00 0.00 2.57
371 372 0.318784 ATCGGATTTCGCGGCTCTAC 60.319 55.000 6.13 0.00 39.05 2.59
407 408 3.118519 TCGTAAGAGTGGCTAATTTCCCC 60.119 47.826 0.00 0.00 45.01 4.81
497 499 9.650539 CTCCATTATATCAAAATCTGATCTCGT 57.349 33.333 0.00 0.00 44.05 4.18
510 512 9.077885 GCCACTAATTTTCCTCCATTATATCAA 57.922 33.333 0.00 0.00 0.00 2.57
524 526 7.378728 GCTGGTATTAAATCGCCACTAATTTTC 59.621 37.037 0.00 0.00 0.00 2.29
530 532 3.068448 TCGCTGGTATTAAATCGCCACTA 59.932 43.478 0.00 0.00 0.00 2.74
684 1336 7.598493 CCCTGTGTACATCAAGGTTAATTTTTG 59.402 37.037 16.59 0.76 0.00 2.44
811 1478 8.129211 ACGAAATTTACTCCTCAAAAACAGAAG 58.871 33.333 0.00 0.00 0.00 2.85
886 1562 5.844516 TGGGGTTCTTATATAAGACTGGGAG 59.155 44.000 22.16 0.00 41.64 4.30
895 1571 3.911260 TCGGCCATGGGGTTCTTATATAA 59.089 43.478 15.13 0.00 36.17 0.98
1135 1812 4.728102 CGCCCACCGCTCGTACAA 62.728 66.667 0.00 0.00 34.21 2.41
1155 1832 0.321996 GGAGAGCCTTTCCGAAGTGT 59.678 55.000 0.00 0.00 0.00 3.55
1164 1841 2.224159 TCCGCTTGGGAGAGCCTTT 61.224 57.895 0.00 0.00 40.94 3.11
1219 1896 4.838486 CGCGAGCCGGACACTCTC 62.838 72.222 5.05 0.00 31.71 3.20
1245 1922 1.228429 CTTGAGTTTTCCCGGGCCA 60.228 57.895 18.49 0.56 0.00 5.36
1304 1981 0.530650 CGGAATGTAGCAGCGGATGT 60.531 55.000 0.00 0.00 0.00 3.06
1479 2156 1.555075 TGCTCGATCTTGTAAAGGCCT 59.445 47.619 0.00 0.00 46.24 5.19
1527 2204 1.502640 GTCGCAGTCTACGAGCTGT 59.497 57.895 0.00 0.00 40.80 4.40
1582 2259 3.259123 AGTGAAATGGTTTGGAATGCCTC 59.741 43.478 0.00 0.00 34.31 4.70
1600 2277 1.405933 CGAGATGCCATCACCAAGTGA 60.406 52.381 7.56 0.00 46.90 3.41
1601 2278 1.012086 CGAGATGCCATCACCAAGTG 58.988 55.000 7.56 0.00 34.45 3.16
1602 2279 0.745845 GCGAGATGCCATCACCAAGT 60.746 55.000 7.56 0.00 37.76 3.16
1842 2519 3.567579 AACCAGGGTCATGGCGTGG 62.568 63.158 14.24 14.24 44.80 4.94
1916 2593 4.026052 CCAGGTATTTTTGAGGAGCCAAT 58.974 43.478 0.00 0.00 0.00 3.16
2004 2681 1.883084 CTCGAGCATTACCCCGCAC 60.883 63.158 0.00 0.00 0.00 5.34
2071 2748 7.599245 AGTTAAAGCTCATATATAGGCACGTTC 59.401 37.037 10.41 0.00 0.00 3.95
2074 2751 8.981724 TTAGTTAAAGCTCATATATAGGCACG 57.018 34.615 10.41 0.00 0.00 5.34
2114 2793 6.663944 AAAACGCTCTTACATTATGAGACC 57.336 37.500 0.00 0.00 33.20 3.85
2118 2797 5.708230 ACCCAAAAACGCTCTTACATTATGA 59.292 36.000 0.00 0.00 0.00 2.15
2125 2804 3.059166 TCGTACCCAAAAACGCTCTTAC 58.941 45.455 0.00 0.00 38.94 2.34
2140 2819 7.172361 CACTAACTATACTACTCCCTTCGTACC 59.828 44.444 0.00 0.00 0.00 3.34
2141 2820 7.928706 TCACTAACTATACTACTCCCTTCGTAC 59.071 40.741 0.00 0.00 0.00 3.67
2142 2821 8.023021 TCACTAACTATACTACTCCCTTCGTA 57.977 38.462 0.00 0.00 0.00 3.43
2227 2941 2.437281 CACTGGAATCTCTGGCTACCAT 59.563 50.000 0.00 0.00 30.82 3.55
2266 2980 3.925238 CATGCTACCGTTCGCGCC 61.925 66.667 0.00 0.00 39.70 6.53
2451 3167 2.569404 GGAAGAGAAGGTGAGTCATGGT 59.431 50.000 0.00 0.00 0.00 3.55
2456 3172 3.306433 GGTGAAGGAAGAGAAGGTGAGTC 60.306 52.174 0.00 0.00 0.00 3.36
2563 3279 2.793278 ATGTGTTGCCGTTTTCTTCC 57.207 45.000 0.00 0.00 0.00 3.46
2574 3290 0.168128 GAGGCGTTGGTATGTGTTGC 59.832 55.000 0.00 0.00 0.00 4.17
2626 3343 3.261951 CTCGCCCGTGCCAATACG 61.262 66.667 0.00 0.00 43.35 3.06
2675 3392 2.125147 TGCTGCCGTCATAGCACC 60.125 61.111 0.00 0.00 44.36 5.01
2682 3399 1.005037 AAACGATCTGCTGCCGTCA 60.005 52.632 10.18 0.00 35.28 4.35
2785 3502 1.215244 CTATGCCGTCACATGCTCAG 58.785 55.000 0.00 0.00 0.00 3.35
2864 3581 1.680338 GCCATAGACACCATCCAACC 58.320 55.000 0.00 0.00 0.00 3.77
2866 3583 0.180171 CCGCCATAGACACCATCCAA 59.820 55.000 0.00 0.00 0.00 3.53
2951 3668 0.183492 AGAGCTGCAAACCACTTCCA 59.817 50.000 1.02 0.00 0.00 3.53
2962 3679 1.374631 CCTGTGCGTTAGAGCTGCA 60.375 57.895 1.02 0.00 38.13 4.41
2964 3681 0.320771 AACCCTGTGCGTTAGAGCTG 60.321 55.000 0.00 0.00 38.13 4.24
2965 3682 0.320771 CAACCCTGTGCGTTAGAGCT 60.321 55.000 0.00 0.00 38.13 4.09
2966 3683 0.320421 TCAACCCTGTGCGTTAGAGC 60.320 55.000 0.00 0.00 37.71 4.09
2968 3685 1.870580 CGTTCAACCCTGTGCGTTAGA 60.871 52.381 0.00 0.00 0.00 2.10
2969 3686 0.511221 CGTTCAACCCTGTGCGTTAG 59.489 55.000 0.00 0.00 0.00 2.34
2970 3687 0.881159 CCGTTCAACCCTGTGCGTTA 60.881 55.000 0.00 0.00 0.00 3.18
2971 3688 2.184167 CCGTTCAACCCTGTGCGTT 61.184 57.895 0.00 0.00 0.00 4.84
2974 3691 3.670377 GGCCGTTCAACCCTGTGC 61.670 66.667 0.00 0.00 0.00 4.57
2975 3692 2.113139 AGGCCGTTCAACCCTGTG 59.887 61.111 0.00 0.00 0.00 3.66
2976 3693 2.113139 CAGGCCGTTCAACCCTGT 59.887 61.111 0.00 0.00 40.92 4.00
2977 3694 3.365265 GCAGGCCGTTCAACCCTG 61.365 66.667 8.17 8.17 46.95 4.45
2992 3721 1.295357 CGTTGGATTGGCACTACGCA 61.295 55.000 0.00 0.00 45.17 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.