Multiple sequence alignment - TraesCS7B01G449600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G449600 chr7B 100.000 2564 0 0 1 2564 711732769 711730206 0.000000e+00 4735.0
1 TraesCS7B01G449600 chr7B 96.667 60 2 0 1514 1573 581439557 581439498 1.620000e-17 100.0
2 TraesCS7B01G449600 chr7D 92.302 1286 62 19 1281 2564 617511722 617510472 0.000000e+00 1792.0
3 TraesCS7B01G449600 chr7D 92.937 623 19 10 638 1258 617512399 617511800 0.000000e+00 883.0
4 TraesCS7B01G449600 chr7D 84.921 252 28 5 1331 1578 617655437 617655192 1.970000e-61 246.0
5 TraesCS7B01G449600 chr7D 77.251 211 14 16 689 898 617656730 617656553 2.720000e-15 93.5
6 TraesCS7B01G449600 chr7D 94.340 53 3 0 638 690 617515366 617515314 5.880000e-12 82.4
7 TraesCS7B01G449600 chr7D 100.000 34 0 0 1253 1286 617511771 617511738 2.130000e-06 63.9
8 TraesCS7B01G449600 chr7A 92.986 556 21 6 704 1258 711459057 711458519 0.000000e+00 795.0
9 TraesCS7B01G449600 chr7A 90.278 504 17 14 1282 1774 711458417 711457935 4.660000e-177 630.0
10 TraesCS7B01G449600 chr7A 90.244 410 20 2 1961 2354 711453839 711453434 3.780000e-143 518.0
11 TraesCS7B01G449600 chr7A 87.778 180 20 2 1337 1515 711583412 711583234 2.590000e-50 209.0
12 TraesCS7B01G449600 chr6D 77.833 406 69 20 1121 1515 24001632 24002027 5.520000e-57 231.0
13 TraesCS7B01G449600 chr3D 77.670 412 66 20 1120 1515 611407381 611407782 7.140000e-56 228.0
14 TraesCS7B01G449600 chr3A 77.184 412 68 21 1120 1515 746261461 746261862 1.540000e-52 217.0
15 TraesCS7B01G449600 chr6A 86.517 178 22 2 1339 1515 22522968 22523144 7.240000e-46 195.0
16 TraesCS7B01G449600 chr5B 86.705 173 21 2 1344 1515 639670827 639670656 9.360000e-45 191.0
17 TraesCS7B01G449600 chr2B 89.256 121 9 2 469 585 731313987 731313867 5.720000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G449600 chr7B 711730206 711732769 2563 True 4735.000 4735 100.00000 1 2564 1 chr7B.!!$R2 2563
1 TraesCS7B01G449600 chr7D 617510472 617515366 4894 True 705.325 1792 94.89475 638 2564 4 chr7D.!!$R1 1926
2 TraesCS7B01G449600 chr7A 711457935 711459057 1122 True 712.500 795 91.63200 704 1774 2 chr7A.!!$R3 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.03213 GACCGAGCGGCATGAGAATA 59.968 55.0 9.14 0.0 39.32 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 4967 0.035176 GGATCTGCCCTCTCTCATGC 59.965 60.0 0.0 0.0 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.456317 ACTCACACACCCTCGTCC 58.544 61.111 0.00 0.00 0.00 4.79
18 19 1.152525 ACTCACACACCCTCGTCCT 60.153 57.895 0.00 0.00 0.00 3.85
19 20 1.290324 CTCACACACCCTCGTCCTG 59.710 63.158 0.00 0.00 0.00 3.86
20 21 2.357517 CACACACCCTCGTCCTGC 60.358 66.667 0.00 0.00 0.00 4.85
21 22 3.626924 ACACACCCTCGTCCTGCC 61.627 66.667 0.00 0.00 0.00 4.85
22 23 3.625897 CACACCCTCGTCCTGCCA 61.626 66.667 0.00 0.00 0.00 4.92
23 24 2.607750 ACACCCTCGTCCTGCCAT 60.608 61.111 0.00 0.00 0.00 4.40
24 25 2.187946 CACCCTCGTCCTGCCATC 59.812 66.667 0.00 0.00 0.00 3.51
25 26 3.083997 ACCCTCGTCCTGCCATCC 61.084 66.667 0.00 0.00 0.00 3.51
26 27 2.765807 CCCTCGTCCTGCCATCCT 60.766 66.667 0.00 0.00 0.00 3.24
27 28 2.801631 CCCTCGTCCTGCCATCCTC 61.802 68.421 0.00 0.00 0.00 3.71
28 29 2.801631 CCTCGTCCTGCCATCCTCC 61.802 68.421 0.00 0.00 0.00 4.30
29 30 1.760086 CTCGTCCTGCCATCCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
30 31 1.743321 CTCGTCCTGCCATCCTCCTC 61.743 65.000 0.00 0.00 0.00 3.71
31 32 2.801631 CGTCCTGCCATCCTCCTCC 61.802 68.421 0.00 0.00 0.00 4.30
32 33 1.383803 GTCCTGCCATCCTCCTCCT 60.384 63.158 0.00 0.00 0.00 3.69
33 34 1.074926 TCCTGCCATCCTCCTCCTC 60.075 63.158 0.00 0.00 0.00 3.71
34 35 1.074623 CCTGCCATCCTCCTCCTCT 60.075 63.158 0.00 0.00 0.00 3.69
35 36 0.693767 CCTGCCATCCTCCTCCTCTT 60.694 60.000 0.00 0.00 0.00 2.85
36 37 1.211456 CTGCCATCCTCCTCCTCTTT 58.789 55.000 0.00 0.00 0.00 2.52
37 38 0.914644 TGCCATCCTCCTCCTCTTTG 59.085 55.000 0.00 0.00 0.00 2.77
38 39 0.465278 GCCATCCTCCTCCTCTTTGC 60.465 60.000 0.00 0.00 0.00 3.68
39 40 1.211456 CCATCCTCCTCCTCTTTGCT 58.789 55.000 0.00 0.00 0.00 3.91
40 41 1.563410 CCATCCTCCTCCTCTTTGCTT 59.437 52.381 0.00 0.00 0.00 3.91
41 42 2.025510 CCATCCTCCTCCTCTTTGCTTT 60.026 50.000 0.00 0.00 0.00 3.51
42 43 3.277715 CATCCTCCTCCTCTTTGCTTTC 58.722 50.000 0.00 0.00 0.00 2.62
43 44 1.630878 TCCTCCTCCTCTTTGCTTTCC 59.369 52.381 0.00 0.00 0.00 3.13
44 45 1.340502 CCTCCTCCTCTTTGCTTTCCC 60.341 57.143 0.00 0.00 0.00 3.97
45 46 1.632920 CTCCTCCTCTTTGCTTTCCCT 59.367 52.381 0.00 0.00 0.00 4.20
46 47 1.630878 TCCTCCTCTTTGCTTTCCCTC 59.369 52.381 0.00 0.00 0.00 4.30
47 48 1.340502 CCTCCTCTTTGCTTTCCCTCC 60.341 57.143 0.00 0.00 0.00 4.30
48 49 0.698818 TCCTCTTTGCTTTCCCTCCC 59.301 55.000 0.00 0.00 0.00 4.30
49 50 0.323816 CCTCTTTGCTTTCCCTCCCC 60.324 60.000 0.00 0.00 0.00 4.81
50 51 0.701147 CTCTTTGCTTTCCCTCCCCT 59.299 55.000 0.00 0.00 0.00 4.79
51 52 0.698818 TCTTTGCTTTCCCTCCCCTC 59.301 55.000 0.00 0.00 0.00 4.30
52 53 0.701147 CTTTGCTTTCCCTCCCCTCT 59.299 55.000 0.00 0.00 0.00 3.69
53 54 1.076187 CTTTGCTTTCCCTCCCCTCTT 59.924 52.381 0.00 0.00 0.00 2.85
54 55 0.698818 TTGCTTTCCCTCCCCTCTTC 59.301 55.000 0.00 0.00 0.00 2.87
55 56 1.208165 TGCTTTCCCTCCCCTCTTCC 61.208 60.000 0.00 0.00 0.00 3.46
56 57 1.208165 GCTTTCCCTCCCCTCTTCCA 61.208 60.000 0.00 0.00 0.00 3.53
57 58 1.601248 CTTTCCCTCCCCTCTTCCAT 58.399 55.000 0.00 0.00 0.00 3.41
58 59 1.213926 CTTTCCCTCCCCTCTTCCATG 59.786 57.143 0.00 0.00 0.00 3.66
59 60 0.624500 TTCCCTCCCCTCTTCCATGG 60.625 60.000 4.97 4.97 0.00 3.66
60 61 2.761465 CCCTCCCCTCTTCCATGGC 61.761 68.421 6.96 0.00 0.00 4.40
61 62 1.695597 CCTCCCCTCTTCCATGGCT 60.696 63.158 6.96 0.00 0.00 4.75
62 63 1.530771 CTCCCCTCTTCCATGGCTG 59.469 63.158 6.96 1.80 0.00 4.85
63 64 1.992519 CTCCCCTCTTCCATGGCTGG 61.993 65.000 6.96 6.04 44.64 4.85
64 65 2.123982 CCCTCTTCCATGGCTGGC 60.124 66.667 6.96 0.00 42.80 4.85
65 66 2.679092 CCTCTTCCATGGCTGGCA 59.321 61.111 6.96 6.31 42.80 4.92
66 67 1.751927 CCTCTTCCATGGCTGGCAC 60.752 63.158 6.96 0.00 42.80 5.01
67 68 1.001764 CTCTTCCATGGCTGGCACA 60.002 57.895 6.96 0.00 42.80 4.57
68 69 0.609957 CTCTTCCATGGCTGGCACAA 60.610 55.000 6.96 0.00 42.80 3.33
69 70 0.609957 TCTTCCATGGCTGGCACAAG 60.610 55.000 6.96 9.32 42.80 3.16
70 71 0.609957 CTTCCATGGCTGGCACAAGA 60.610 55.000 6.96 0.46 42.80 3.02
71 72 0.895100 TTCCATGGCTGGCACAAGAC 60.895 55.000 6.96 0.00 42.80 3.01
72 73 2.693762 CCATGGCTGGCACAAGACG 61.694 63.158 5.88 0.00 38.70 4.18
73 74 2.360350 ATGGCTGGCACAAGACGG 60.360 61.111 5.88 0.00 38.70 4.79
74 75 2.894257 ATGGCTGGCACAAGACGGA 61.894 57.895 5.88 0.00 38.70 4.69
75 76 2.045926 GGCTGGCACAAGACGGAT 60.046 61.111 0.00 0.00 38.70 4.18
76 77 2.401766 GGCTGGCACAAGACGGATG 61.402 63.158 0.00 0.00 38.70 3.51
77 78 2.401766 GCTGGCACAAGACGGATGG 61.402 63.158 0.00 0.00 38.70 3.51
78 79 1.746615 CTGGCACAAGACGGATGGG 60.747 63.158 0.00 0.00 38.70 4.00
79 80 2.184020 CTGGCACAAGACGGATGGGA 62.184 60.000 0.00 0.00 38.70 4.37
80 81 1.450312 GGCACAAGACGGATGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
81 82 1.450312 GCACAAGACGGATGGGAGG 60.450 63.158 0.00 0.00 0.00 4.30
82 83 1.450312 CACAAGACGGATGGGAGGC 60.450 63.158 0.00 0.00 0.00 4.70
83 84 1.918293 ACAAGACGGATGGGAGGCA 60.918 57.895 0.00 0.00 0.00 4.75
84 85 1.153289 CAAGACGGATGGGAGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
85 86 3.036429 AAGACGGATGGGAGGCAGC 62.036 63.158 0.00 0.00 0.00 5.25
86 87 4.899239 GACGGATGGGAGGCAGCG 62.899 72.222 0.00 0.00 0.00 5.18
97 98 2.124983 GGCAGCGCCTCATCAAGA 60.125 61.111 2.29 0.00 46.69 3.02
98 99 1.525535 GGCAGCGCCTCATCAAGAT 60.526 57.895 2.29 0.00 46.69 2.40
99 100 1.505477 GGCAGCGCCTCATCAAGATC 61.505 60.000 2.29 0.00 46.69 2.75
100 101 1.505477 GCAGCGCCTCATCAAGATCC 61.505 60.000 2.29 0.00 0.00 3.36
101 102 0.179065 CAGCGCCTCATCAAGATCCA 60.179 55.000 2.29 0.00 0.00 3.41
102 103 0.106335 AGCGCCTCATCAAGATCCAG 59.894 55.000 2.29 0.00 0.00 3.86
103 104 0.105593 GCGCCTCATCAAGATCCAGA 59.894 55.000 0.00 0.00 0.00 3.86
104 105 1.270732 GCGCCTCATCAAGATCCAGAT 60.271 52.381 0.00 0.00 0.00 2.90
105 106 2.686235 CGCCTCATCAAGATCCAGATC 58.314 52.381 0.00 0.00 38.09 2.75
106 107 2.686235 GCCTCATCAAGATCCAGATCG 58.314 52.381 2.08 0.00 42.48 3.69
107 108 2.612471 GCCTCATCAAGATCCAGATCGG 60.612 54.545 2.08 0.00 42.48 4.18
108 109 2.028294 CCTCATCAAGATCCAGATCGGG 60.028 54.545 5.39 5.39 42.48 5.14
109 110 1.345741 TCATCAAGATCCAGATCGGGC 59.654 52.381 7.07 0.00 42.48 6.13
110 111 1.071228 CATCAAGATCCAGATCGGGCA 59.929 52.381 7.07 0.00 42.48 5.36
111 112 0.755079 TCAAGATCCAGATCGGGCAG 59.245 55.000 7.07 0.00 42.48 4.85
112 113 0.250209 CAAGATCCAGATCGGGCAGG 60.250 60.000 7.07 0.00 42.48 4.85
113 114 1.414061 AAGATCCAGATCGGGCAGGG 61.414 60.000 7.07 0.00 42.48 4.45
114 115 1.838846 GATCCAGATCGGGCAGGGA 60.839 63.158 7.07 0.00 34.36 4.20
115 116 1.151943 ATCCAGATCGGGCAGGGAT 60.152 57.895 7.07 2.13 33.62 3.85
116 117 1.197430 ATCCAGATCGGGCAGGGATC 61.197 60.000 7.07 4.78 40.45 3.36
118 119 1.670590 CAGATCGGGCAGGGATCTC 59.329 63.158 10.74 0.00 45.68 2.75
119 120 1.905843 AGATCGGGCAGGGATCTCG 60.906 63.158 8.56 0.00 45.68 4.04
120 121 2.123251 ATCGGGCAGGGATCTCGT 60.123 61.111 0.00 0.00 0.00 4.18
121 122 0.894184 GATCGGGCAGGGATCTCGTA 60.894 60.000 0.00 0.00 37.81 3.43
122 123 0.896019 ATCGGGCAGGGATCTCGTAG 60.896 60.000 0.00 0.00 0.00 3.51
123 124 2.565645 CGGGCAGGGATCTCGTAGG 61.566 68.421 0.00 0.00 0.00 3.18
124 125 1.152525 GGGCAGGGATCTCGTAGGA 60.153 63.158 0.00 0.00 0.00 2.94
125 126 1.182385 GGGCAGGGATCTCGTAGGAG 61.182 65.000 6.08 6.08 41.89 3.69
126 127 1.182385 GGCAGGGATCTCGTAGGAGG 61.182 65.000 12.31 0.00 40.85 4.30
127 128 0.178987 GCAGGGATCTCGTAGGAGGA 60.179 60.000 12.31 0.50 40.85 3.71
128 129 1.754555 GCAGGGATCTCGTAGGAGGAA 60.755 57.143 12.31 0.00 40.85 3.36
129 130 2.235016 CAGGGATCTCGTAGGAGGAAG 58.765 57.143 12.31 0.00 40.85 3.46
130 131 1.146152 AGGGATCTCGTAGGAGGAAGG 59.854 57.143 12.31 0.00 40.85 3.46
131 132 0.963225 GGATCTCGTAGGAGGAAGGC 59.037 60.000 12.31 0.00 40.85 4.35
132 133 0.963225 GATCTCGTAGGAGGAAGGCC 59.037 60.000 12.31 0.00 40.85 5.19
133 134 0.824182 ATCTCGTAGGAGGAAGGCCG 60.824 60.000 12.31 0.00 40.85 6.13
134 135 1.453379 CTCGTAGGAGGAAGGCCGA 60.453 63.158 4.45 0.00 39.96 5.54
135 136 1.448922 CTCGTAGGAGGAAGGCCGAG 61.449 65.000 4.45 0.00 39.96 4.63
136 137 2.491022 CGTAGGAGGAAGGCCGAGG 61.491 68.421 0.00 0.00 39.96 4.63
137 138 2.134933 GTAGGAGGAAGGCCGAGGG 61.135 68.421 0.00 0.00 39.96 4.30
138 139 2.633557 TAGGAGGAAGGCCGAGGGT 61.634 63.158 0.00 0.00 39.96 4.34
139 140 2.873557 TAGGAGGAAGGCCGAGGGTG 62.874 65.000 0.00 0.00 39.96 4.61
140 141 3.787001 GAGGAAGGCCGAGGGTGG 61.787 72.222 0.00 0.00 39.96 4.61
141 142 4.658786 AGGAAGGCCGAGGGTGGT 62.659 66.667 0.00 0.00 39.96 4.16
142 143 4.410400 GGAAGGCCGAGGGTGGTG 62.410 72.222 0.00 0.00 0.00 4.17
143 144 4.410400 GAAGGCCGAGGGTGGTGG 62.410 72.222 0.00 0.00 0.00 4.61
176 177 4.082523 CGGAGGCAGGCGAAGGAA 62.083 66.667 0.00 0.00 0.00 3.36
177 178 2.124942 GGAGGCAGGCGAAGGAAG 60.125 66.667 0.00 0.00 0.00 3.46
178 179 2.665603 GAGGCAGGCGAAGGAAGT 59.334 61.111 0.00 0.00 0.00 3.01
179 180 1.743252 GAGGCAGGCGAAGGAAGTG 60.743 63.158 0.00 0.00 0.00 3.16
180 181 2.032681 GGCAGGCGAAGGAAGTGT 59.967 61.111 0.00 0.00 0.00 3.55
181 182 2.035442 GGCAGGCGAAGGAAGTGTC 61.035 63.158 0.00 0.00 0.00 3.67
182 183 1.301716 GCAGGCGAAGGAAGTGTCA 60.302 57.895 0.00 0.00 0.00 3.58
183 184 1.294659 GCAGGCGAAGGAAGTGTCAG 61.295 60.000 0.00 0.00 0.00 3.51
184 185 1.004440 AGGCGAAGGAAGTGTCAGC 60.004 57.895 0.00 0.00 0.00 4.26
185 186 1.301716 GGCGAAGGAAGTGTCAGCA 60.302 57.895 0.00 0.00 0.00 4.41
186 187 1.294659 GGCGAAGGAAGTGTCAGCAG 61.295 60.000 0.00 0.00 0.00 4.24
187 188 1.905922 GCGAAGGAAGTGTCAGCAGC 61.906 60.000 0.00 0.00 0.00 5.25
188 189 1.621301 CGAAGGAAGTGTCAGCAGCG 61.621 60.000 0.00 0.00 0.00 5.18
189 190 0.319900 GAAGGAAGTGTCAGCAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
190 191 0.320247 AAGGAAGTGTCAGCAGCGAG 60.320 55.000 0.00 0.00 0.00 5.03
191 192 2.386660 GGAAGTGTCAGCAGCGAGC 61.387 63.158 0.00 0.00 46.19 5.03
226 227 4.521062 CGAGGCGGGCAGAGGAAG 62.521 72.222 3.78 0.00 0.00 3.46
227 228 4.168291 GAGGCGGGCAGAGGAAGG 62.168 72.222 3.78 0.00 0.00 3.46
232 233 4.120755 GGGCAGAGGAAGGGGCAG 62.121 72.222 0.00 0.00 0.00 4.85
233 234 4.811364 GGCAGAGGAAGGGGCAGC 62.811 72.222 0.00 0.00 0.00 5.25
234 235 3.726144 GCAGAGGAAGGGGCAGCT 61.726 66.667 0.00 0.00 0.00 4.24
235 236 2.271497 CAGAGGAAGGGGCAGCTG 59.729 66.667 10.11 10.11 0.00 4.24
236 237 3.726144 AGAGGAAGGGGCAGCTGC 61.726 66.667 30.88 30.88 41.14 5.25
259 260 4.410400 GGGCGGTGAACCCTGGAG 62.410 72.222 0.00 0.00 44.68 3.86
260 261 3.319198 GGCGGTGAACCCTGGAGA 61.319 66.667 0.00 0.00 0.00 3.71
261 262 2.266055 GCGGTGAACCCTGGAGAG 59.734 66.667 0.00 0.00 0.00 3.20
262 263 2.982130 CGGTGAACCCTGGAGAGG 59.018 66.667 0.00 0.00 39.42 3.69
263 264 1.609501 CGGTGAACCCTGGAGAGGA 60.610 63.158 0.00 0.00 42.93 3.71
264 265 1.889530 CGGTGAACCCTGGAGAGGAC 61.890 65.000 0.00 0.00 42.93 3.85
265 266 1.554583 GGTGAACCCTGGAGAGGACC 61.555 65.000 0.00 0.00 42.93 4.46
266 267 1.609501 TGAACCCTGGAGAGGACCG 60.610 63.158 0.00 0.00 42.93 4.79
267 268 1.305046 GAACCCTGGAGAGGACCGA 60.305 63.158 0.00 0.00 42.93 4.69
268 269 1.305381 AACCCTGGAGAGGACCGAG 60.305 63.158 0.00 0.00 42.93 4.63
269 270 3.151022 CCCTGGAGAGGACCGAGC 61.151 72.222 0.00 0.00 42.93 5.03
270 271 3.522731 CCTGGAGAGGACCGAGCG 61.523 72.222 0.00 0.00 42.93 5.03
271 272 3.522731 CTGGAGAGGACCGAGCGG 61.523 72.222 7.48 7.48 42.03 5.52
274 275 3.532155 GAGAGGACCGAGCGGCAT 61.532 66.667 9.14 0.00 39.32 4.40
275 276 3.781770 GAGAGGACCGAGCGGCATG 62.782 68.421 9.14 0.00 39.32 4.06
276 277 3.838271 GAGGACCGAGCGGCATGA 61.838 66.667 9.14 0.00 39.32 3.07
277 278 3.781770 GAGGACCGAGCGGCATGAG 62.782 68.421 9.14 0.00 39.32 2.90
278 279 3.838271 GGACCGAGCGGCATGAGA 61.838 66.667 9.14 0.00 39.32 3.27
279 280 2.184322 GACCGAGCGGCATGAGAA 59.816 61.111 9.14 0.00 39.32 2.87
280 281 1.227380 GACCGAGCGGCATGAGAAT 60.227 57.895 9.14 0.00 39.32 2.40
281 282 0.032130 GACCGAGCGGCATGAGAATA 59.968 55.000 9.14 0.00 39.32 1.75
282 283 0.032678 ACCGAGCGGCATGAGAATAG 59.967 55.000 9.14 0.00 39.32 1.73
283 284 0.668706 CCGAGCGGCATGAGAATAGG 60.669 60.000 1.45 0.00 0.00 2.57
284 285 0.315251 CGAGCGGCATGAGAATAGGA 59.685 55.000 1.45 0.00 0.00 2.94
285 286 1.668337 CGAGCGGCATGAGAATAGGAG 60.668 57.143 1.45 0.00 0.00 3.69
286 287 1.615883 GAGCGGCATGAGAATAGGAGA 59.384 52.381 1.45 0.00 0.00 3.71
287 288 2.036475 GAGCGGCATGAGAATAGGAGAA 59.964 50.000 1.45 0.00 0.00 2.87
288 289 2.435805 AGCGGCATGAGAATAGGAGAAA 59.564 45.455 1.45 0.00 0.00 2.52
289 290 2.545946 GCGGCATGAGAATAGGAGAAAC 59.454 50.000 0.00 0.00 0.00 2.78
290 291 2.797156 CGGCATGAGAATAGGAGAAACG 59.203 50.000 0.00 0.00 0.00 3.60
291 292 3.490933 CGGCATGAGAATAGGAGAAACGA 60.491 47.826 0.00 0.00 0.00 3.85
292 293 4.054671 GGCATGAGAATAGGAGAAACGAG 58.945 47.826 0.00 0.00 0.00 4.18
293 294 4.202161 GGCATGAGAATAGGAGAAACGAGA 60.202 45.833 0.00 0.00 0.00 4.04
294 295 5.510520 GGCATGAGAATAGGAGAAACGAGAT 60.511 44.000 0.00 0.00 0.00 2.75
295 296 5.633182 GCATGAGAATAGGAGAAACGAGATC 59.367 44.000 0.00 0.00 0.00 2.75
296 297 5.425577 TGAGAATAGGAGAAACGAGATCG 57.574 43.478 0.00 0.00 46.33 3.69
297 298 5.123936 TGAGAATAGGAGAAACGAGATCGA 58.876 41.667 9.58 0.00 43.02 3.59
298 299 5.237561 TGAGAATAGGAGAAACGAGATCGAG 59.762 44.000 9.58 0.00 43.02 4.04
299 300 4.517453 AGAATAGGAGAAACGAGATCGAGG 59.483 45.833 9.58 0.00 43.02 4.63
300 301 1.394618 AGGAGAAACGAGATCGAGGG 58.605 55.000 9.58 0.00 43.02 4.30
301 302 1.064611 AGGAGAAACGAGATCGAGGGA 60.065 52.381 9.58 0.00 43.02 4.20
302 303 1.335496 GGAGAAACGAGATCGAGGGAG 59.665 57.143 9.58 0.00 43.02 4.30
303 304 2.290464 GAGAAACGAGATCGAGGGAGA 58.710 52.381 9.58 0.00 43.02 3.71
304 305 2.289547 GAGAAACGAGATCGAGGGAGAG 59.710 54.545 9.58 0.00 43.02 3.20
305 306 1.335496 GAAACGAGATCGAGGGAGAGG 59.665 57.143 9.58 0.00 43.02 3.69
306 307 0.466555 AACGAGATCGAGGGAGAGGG 60.467 60.000 9.58 0.00 43.02 4.30
307 308 1.346479 ACGAGATCGAGGGAGAGGGA 61.346 60.000 9.58 0.00 43.02 4.20
308 309 0.605319 CGAGATCGAGGGAGAGGGAG 60.605 65.000 0.00 0.00 43.02 4.30
309 310 0.476771 GAGATCGAGGGAGAGGGAGT 59.523 60.000 0.00 0.00 0.00 3.85
310 311 0.930726 AGATCGAGGGAGAGGGAGTT 59.069 55.000 0.00 0.00 0.00 3.01
311 312 1.036707 GATCGAGGGAGAGGGAGTTG 58.963 60.000 0.00 0.00 0.00 3.16
312 313 0.397816 ATCGAGGGAGAGGGAGTTGG 60.398 60.000 0.00 0.00 0.00 3.77
313 314 1.000486 CGAGGGAGAGGGAGTTGGA 60.000 63.158 0.00 0.00 0.00 3.53
314 315 0.397816 CGAGGGAGAGGGAGTTGGAT 60.398 60.000 0.00 0.00 0.00 3.41
315 316 1.419381 GAGGGAGAGGGAGTTGGATC 58.581 60.000 0.00 0.00 0.00 3.36
316 317 0.397816 AGGGAGAGGGAGTTGGATCG 60.398 60.000 0.00 0.00 0.00 3.69
317 318 0.397254 GGGAGAGGGAGTTGGATCGA 60.397 60.000 0.00 0.00 0.00 3.59
318 319 1.036707 GGAGAGGGAGTTGGATCGAG 58.963 60.000 0.00 0.00 0.00 4.04
319 320 0.387565 GAGAGGGAGTTGGATCGAGC 59.612 60.000 0.00 0.00 0.00 5.03
320 321 1.066587 GAGGGAGTTGGATCGAGCG 59.933 63.158 0.00 0.00 0.00 5.03
321 322 1.379977 AGGGAGTTGGATCGAGCGA 60.380 57.895 0.00 0.00 0.00 4.93
322 323 0.757188 AGGGAGTTGGATCGAGCGAT 60.757 55.000 4.89 4.89 37.59 4.58
323 324 0.959553 GGGAGTTGGATCGAGCGATA 59.040 55.000 5.24 0.00 34.60 2.92
324 325 1.336056 GGGAGTTGGATCGAGCGATAC 60.336 57.143 8.12 8.12 36.05 2.24
325 326 1.663445 GGAGTTGGATCGAGCGATACG 60.663 57.143 10.22 0.00 38.27 3.06
326 327 0.311165 AGTTGGATCGAGCGATACGG 59.689 55.000 10.22 0.00 38.27 4.02
327 328 0.309922 GTTGGATCGAGCGATACGGA 59.690 55.000 10.22 0.00 38.27 4.69
328 329 0.591659 TTGGATCGAGCGATACGGAG 59.408 55.000 10.22 0.00 38.27 4.63
329 330 1.235281 TGGATCGAGCGATACGGAGG 61.235 60.000 10.22 0.00 38.27 4.30
330 331 1.502640 GATCGAGCGATACGGAGGG 59.497 63.158 5.24 0.00 34.60 4.30
331 332 0.954449 GATCGAGCGATACGGAGGGA 60.954 60.000 5.24 0.00 34.60 4.20
332 333 0.536687 ATCGAGCGATACGGAGGGAA 60.537 55.000 3.18 0.00 32.36 3.97
333 334 0.749091 TCGAGCGATACGGAGGGAAA 60.749 55.000 0.00 0.00 0.00 3.13
334 335 0.101759 CGAGCGATACGGAGGGAAAA 59.898 55.000 0.00 0.00 0.00 2.29
335 336 1.470285 CGAGCGATACGGAGGGAAAAA 60.470 52.381 0.00 0.00 0.00 1.94
362 363 4.174305 AAAAACCAGCGTGGAGGG 57.826 55.556 10.46 0.00 40.96 4.30
363 364 1.229076 AAAAACCAGCGTGGAGGGT 59.771 52.632 10.46 0.00 40.96 4.34
364 365 1.106944 AAAAACCAGCGTGGAGGGTG 61.107 55.000 10.46 0.00 40.96 4.61
365 366 2.279037 AAAACCAGCGTGGAGGGTGT 62.279 55.000 10.46 0.00 40.96 4.16
366 367 2.958578 AAACCAGCGTGGAGGGTGTG 62.959 60.000 10.46 0.00 40.96 3.82
367 368 3.625897 CCAGCGTGGAGGGTGTGA 61.626 66.667 0.00 0.00 40.96 3.58
368 369 2.665000 CAGCGTGGAGGGTGTGAT 59.335 61.111 0.00 0.00 0.00 3.06
369 370 1.742880 CAGCGTGGAGGGTGTGATG 60.743 63.158 0.00 0.00 0.00 3.07
370 371 2.436646 GCGTGGAGGGTGTGATGG 60.437 66.667 0.00 0.00 0.00 3.51
371 372 2.954684 GCGTGGAGGGTGTGATGGA 61.955 63.158 0.00 0.00 0.00 3.41
372 373 1.676968 CGTGGAGGGTGTGATGGAA 59.323 57.895 0.00 0.00 0.00 3.53
373 374 0.673644 CGTGGAGGGTGTGATGGAAC 60.674 60.000 0.00 0.00 0.00 3.62
374 375 0.673644 GTGGAGGGTGTGATGGAACG 60.674 60.000 0.00 0.00 0.00 3.95
375 376 0.834261 TGGAGGGTGTGATGGAACGA 60.834 55.000 0.00 0.00 0.00 3.85
376 377 0.323629 GGAGGGTGTGATGGAACGAA 59.676 55.000 0.00 0.00 0.00 3.85
377 378 1.271163 GGAGGGTGTGATGGAACGAAA 60.271 52.381 0.00 0.00 0.00 3.46
378 379 2.500229 GAGGGTGTGATGGAACGAAAA 58.500 47.619 0.00 0.00 0.00 2.29
379 380 2.882137 GAGGGTGTGATGGAACGAAAAA 59.118 45.455 0.00 0.00 0.00 1.94
402 403 2.652941 CCAACGAAAATGGTGGGATG 57.347 50.000 0.00 0.00 29.25 3.51
403 404 2.166829 CCAACGAAAATGGTGGGATGA 58.833 47.619 0.00 0.00 29.25 2.92
404 405 2.560542 CCAACGAAAATGGTGGGATGAA 59.439 45.455 0.00 0.00 29.25 2.57
405 406 3.006323 CCAACGAAAATGGTGGGATGAAA 59.994 43.478 0.00 0.00 29.25 2.69
406 407 4.502259 CCAACGAAAATGGTGGGATGAAAA 60.502 41.667 0.00 0.00 29.25 2.29
407 408 4.946478 ACGAAAATGGTGGGATGAAAAA 57.054 36.364 0.00 0.00 0.00 1.94
428 429 4.946478 AAAACCAACGAAAATGATGGGA 57.054 36.364 0.00 0.00 36.20 4.37
429 430 3.934457 AACCAACGAAAATGATGGGAC 57.066 42.857 0.00 0.00 36.20 4.46
430 431 1.810151 ACCAACGAAAATGATGGGACG 59.190 47.619 0.00 0.00 36.20 4.79
431 432 2.080693 CCAACGAAAATGATGGGACGA 58.919 47.619 0.00 0.00 0.00 4.20
432 433 2.486203 CCAACGAAAATGATGGGACGAA 59.514 45.455 0.00 0.00 0.00 3.85
433 434 3.057876 CCAACGAAAATGATGGGACGAAA 60.058 43.478 0.00 0.00 0.00 3.46
434 435 4.541779 CAACGAAAATGATGGGACGAAAA 58.458 39.130 0.00 0.00 0.00 2.29
435 436 4.839668 ACGAAAATGATGGGACGAAAAA 57.160 36.364 0.00 0.00 0.00 1.94
463 464 5.852282 AAAAACTATTCACCAACTGCTGT 57.148 34.783 0.00 0.00 0.00 4.40
464 465 6.952773 AAAAACTATTCACCAACTGCTGTA 57.047 33.333 0.00 0.00 0.00 2.74
465 466 6.560253 AAAACTATTCACCAACTGCTGTAG 57.440 37.500 0.00 0.00 0.00 2.74
466 467 5.483685 AACTATTCACCAACTGCTGTAGA 57.516 39.130 0.00 0.00 0.00 2.59
467 468 5.078411 ACTATTCACCAACTGCTGTAGAG 57.922 43.478 0.00 0.00 0.00 2.43
468 469 4.772624 ACTATTCACCAACTGCTGTAGAGA 59.227 41.667 0.00 0.00 0.00 3.10
469 470 4.833478 ATTCACCAACTGCTGTAGAGAT 57.167 40.909 0.00 0.00 0.00 2.75
470 471 3.876274 TCACCAACTGCTGTAGAGATC 57.124 47.619 0.00 0.00 0.00 2.75
471 472 2.497675 TCACCAACTGCTGTAGAGATCC 59.502 50.000 0.00 0.00 0.00 3.36
472 473 2.499289 CACCAACTGCTGTAGAGATCCT 59.501 50.000 0.00 0.00 0.00 3.24
473 474 3.701542 CACCAACTGCTGTAGAGATCCTA 59.298 47.826 0.00 0.00 0.00 2.94
474 475 4.343526 CACCAACTGCTGTAGAGATCCTAT 59.656 45.833 0.00 0.00 0.00 2.57
475 476 4.343526 ACCAACTGCTGTAGAGATCCTATG 59.656 45.833 0.00 0.00 0.00 2.23
476 477 4.343526 CCAACTGCTGTAGAGATCCTATGT 59.656 45.833 0.00 0.00 0.00 2.29
477 478 5.508825 CCAACTGCTGTAGAGATCCTATGTC 60.509 48.000 0.00 0.00 0.00 3.06
478 479 4.148838 ACTGCTGTAGAGATCCTATGTCC 58.851 47.826 0.00 0.00 0.00 4.02
479 480 3.501349 TGCTGTAGAGATCCTATGTCCC 58.499 50.000 0.00 0.00 0.00 4.46
480 481 3.141083 TGCTGTAGAGATCCTATGTCCCT 59.859 47.826 0.00 0.00 0.00 4.20
481 482 4.354087 TGCTGTAGAGATCCTATGTCCCTA 59.646 45.833 0.00 0.00 0.00 3.53
482 483 4.703093 GCTGTAGAGATCCTATGTCCCTAC 59.297 50.000 0.00 0.00 0.00 3.18
483 484 5.515886 GCTGTAGAGATCCTATGTCCCTACT 60.516 48.000 0.00 0.00 0.00 2.57
484 485 5.882040 TGTAGAGATCCTATGTCCCTACTG 58.118 45.833 0.00 0.00 0.00 2.74
485 486 4.396357 AGAGATCCTATGTCCCTACTGG 57.604 50.000 0.00 0.00 0.00 4.00
486 487 3.990933 AGAGATCCTATGTCCCTACTGGA 59.009 47.826 0.00 0.00 42.41 3.86
496 497 1.623811 TCCCTACTGGACAGAAACAGC 59.376 52.381 6.29 0.00 38.61 4.40
497 498 1.339151 CCCTACTGGACAGAAACAGCC 60.339 57.143 6.29 0.00 38.25 4.85
498 499 1.347707 CCTACTGGACAGAAACAGCCA 59.652 52.381 6.29 0.00 38.25 4.75
500 501 2.938354 CTGGACAGAAACAGCCAGG 58.062 57.895 0.00 0.00 43.22 4.45
501 502 0.607489 CTGGACAGAAACAGCCAGGG 60.607 60.000 0.00 0.00 43.22 4.45
502 503 1.352622 TGGACAGAAACAGCCAGGGT 61.353 55.000 0.00 0.00 0.00 4.34
503 504 0.606673 GGACAGAAACAGCCAGGGTC 60.607 60.000 0.00 0.00 0.00 4.46
504 505 0.606673 GACAGAAACAGCCAGGGTCC 60.607 60.000 0.00 0.00 0.00 4.46
505 506 1.303643 CAGAAACAGCCAGGGTCCC 60.304 63.158 0.00 0.00 0.00 4.46
506 507 2.035783 GAAACAGCCAGGGTCCCC 59.964 66.667 3.51 0.00 0.00 4.81
507 508 3.920093 GAAACAGCCAGGGTCCCCG 62.920 68.421 3.51 0.00 41.95 5.73
535 536 3.485431 CCGCTGAAGCTGCAGACG 61.485 66.667 26.87 24.91 38.14 4.18
536 537 3.485431 CGCTGAAGCTGCAGACGG 61.485 66.667 26.87 9.60 38.14 4.79
537 538 2.047844 GCTGAAGCTGCAGACGGA 60.048 61.111 26.87 0.00 38.14 4.69
538 539 2.099431 GCTGAAGCTGCAGACGGAG 61.099 63.158 26.87 8.36 38.14 4.63
539 540 1.588597 CTGAAGCTGCAGACGGAGA 59.411 57.895 17.72 0.00 38.14 3.71
540 541 0.735632 CTGAAGCTGCAGACGGAGAC 60.736 60.000 17.72 0.00 38.14 3.36
552 553 2.442458 GGAGACGGAGGAGGACCC 60.442 72.222 0.00 0.00 36.73 4.46
553 554 2.359404 GAGACGGAGGAGGACCCA 59.641 66.667 0.00 0.00 37.41 4.51
554 555 1.305046 GAGACGGAGGAGGACCCAA 60.305 63.158 0.00 0.00 37.41 4.12
555 556 1.605971 GAGACGGAGGAGGACCCAAC 61.606 65.000 0.00 0.00 37.41 3.77
556 557 2.995574 ACGGAGGAGGACCCAACG 60.996 66.667 0.00 0.00 40.58 4.10
557 558 2.995574 CGGAGGAGGACCCAACGT 60.996 66.667 0.00 0.00 37.41 3.99
558 559 2.663196 GGAGGAGGACCCAACGTG 59.337 66.667 0.00 0.00 37.41 4.49
559 560 2.663196 GAGGAGGACCCAACGTGG 59.337 66.667 0.00 0.00 37.41 4.94
560 561 3.607370 GAGGAGGACCCAACGTGGC 62.607 68.421 0.00 0.00 35.79 5.01
561 562 4.717313 GGAGGACCCAACGTGGCC 62.717 72.222 0.00 0.00 35.79 5.36
570 571 4.071875 AACGTGGCCGGCGATGTA 62.072 61.111 32.75 9.17 38.78 2.29
571 572 4.508128 ACGTGGCCGGCGATGTAG 62.508 66.667 31.85 17.47 38.78 2.74
572 573 4.201679 CGTGGCCGGCGATGTAGA 62.202 66.667 22.54 0.00 0.00 2.59
573 574 2.279517 GTGGCCGGCGATGTAGAG 60.280 66.667 22.54 0.00 0.00 2.43
574 575 3.536917 TGGCCGGCGATGTAGAGG 61.537 66.667 22.54 0.00 0.00 3.69
575 576 3.224324 GGCCGGCGATGTAGAGGA 61.224 66.667 22.54 0.00 0.00 3.71
576 577 2.792947 GGCCGGCGATGTAGAGGAA 61.793 63.158 22.54 0.00 0.00 3.36
577 578 1.143183 GCCGGCGATGTAGAGGAAA 59.857 57.895 12.58 0.00 0.00 3.13
578 579 0.876342 GCCGGCGATGTAGAGGAAAG 60.876 60.000 12.58 0.00 0.00 2.62
579 580 0.876342 CCGGCGATGTAGAGGAAAGC 60.876 60.000 9.30 0.00 0.00 3.51
580 581 0.179111 CGGCGATGTAGAGGAAAGCA 60.179 55.000 0.00 0.00 0.00 3.91
581 582 1.576356 GGCGATGTAGAGGAAAGCAG 58.424 55.000 0.00 0.00 0.00 4.24
582 583 1.576356 GCGATGTAGAGGAAAGCAGG 58.424 55.000 0.00 0.00 0.00 4.85
583 584 1.137086 GCGATGTAGAGGAAAGCAGGA 59.863 52.381 0.00 0.00 0.00 3.86
584 585 2.801342 GCGATGTAGAGGAAAGCAGGAG 60.801 54.545 0.00 0.00 0.00 3.69
585 586 2.690497 CGATGTAGAGGAAAGCAGGAGA 59.310 50.000 0.00 0.00 0.00 3.71
586 587 3.243367 CGATGTAGAGGAAAGCAGGAGAG 60.243 52.174 0.00 0.00 0.00 3.20
587 588 3.176924 TGTAGAGGAAAGCAGGAGAGT 57.823 47.619 0.00 0.00 0.00 3.24
588 589 4.317530 TGTAGAGGAAAGCAGGAGAGTA 57.682 45.455 0.00 0.00 0.00 2.59
589 590 4.274147 TGTAGAGGAAAGCAGGAGAGTAG 58.726 47.826 0.00 0.00 0.00 2.57
590 591 3.466395 AGAGGAAAGCAGGAGAGTAGT 57.534 47.619 0.00 0.00 0.00 2.73
591 592 3.361786 AGAGGAAAGCAGGAGAGTAGTC 58.638 50.000 0.00 0.00 0.00 2.59
592 593 3.011257 AGAGGAAAGCAGGAGAGTAGTCT 59.989 47.826 0.00 0.00 34.86 3.24
602 603 2.566913 GAGAGTAGTCTCCAGATGCGA 58.433 52.381 15.67 0.00 43.26 5.10
603 604 2.946329 GAGAGTAGTCTCCAGATGCGAA 59.054 50.000 15.67 0.00 43.26 4.70
604 605 2.685897 AGAGTAGTCTCCAGATGCGAAC 59.314 50.000 0.00 0.00 41.26 3.95
605 606 2.423892 GAGTAGTCTCCAGATGCGAACA 59.576 50.000 0.00 0.00 34.87 3.18
606 607 2.425312 AGTAGTCTCCAGATGCGAACAG 59.575 50.000 0.00 0.00 0.00 3.16
607 608 1.261480 AGTCTCCAGATGCGAACAGT 58.739 50.000 0.00 0.00 0.00 3.55
608 609 1.620819 AGTCTCCAGATGCGAACAGTT 59.379 47.619 0.00 0.00 0.00 3.16
609 610 1.728971 GTCTCCAGATGCGAACAGTTG 59.271 52.381 0.00 0.00 0.00 3.16
610 611 1.081892 CTCCAGATGCGAACAGTTGG 58.918 55.000 0.00 0.00 35.54 3.77
611 612 0.321564 TCCAGATGCGAACAGTTGGG 60.322 55.000 0.00 0.00 35.16 4.12
612 613 0.321564 CCAGATGCGAACAGTTGGGA 60.322 55.000 0.00 0.00 32.32 4.37
613 614 1.081892 CAGATGCGAACAGTTGGGAG 58.918 55.000 0.00 0.00 0.00 4.30
614 615 0.674895 AGATGCGAACAGTTGGGAGC 60.675 55.000 0.00 0.00 0.00 4.70
615 616 1.970917 GATGCGAACAGTTGGGAGCG 61.971 60.000 0.00 0.00 0.00 5.03
616 617 2.357034 GCGAACAGTTGGGAGCGA 60.357 61.111 0.00 0.00 0.00 4.93
617 618 1.959226 GCGAACAGTTGGGAGCGAA 60.959 57.895 0.00 0.00 0.00 4.70
618 619 1.901650 GCGAACAGTTGGGAGCGAAG 61.902 60.000 0.00 0.00 0.00 3.79
636 637 5.127371 CGAAGCGTCTAATTACTGTTTCC 57.873 43.478 0.00 0.00 0.00 3.13
699 3667 6.290605 TGCCTATGAATCGAAATCATTCTCA 58.709 36.000 18.60 12.29 38.44 3.27
716 3684 3.974293 ACGGCCGGTTCCCCAAAT 61.974 61.111 31.76 0.00 0.00 2.32
719 3687 1.295101 GGCCGGTTCCCCAAATTTG 59.705 57.895 11.40 11.40 0.00 2.32
739 3707 0.827368 GAATTCCGTCTCCCTCAGCT 59.173 55.000 0.00 0.00 0.00 4.24
767 3735 4.109050 CGATCGAGGAAAAGAAGAAGAGG 58.891 47.826 10.26 0.00 0.00 3.69
783 3751 4.777366 AGAAGAGGAAAGAGAAGAGGAAGG 59.223 45.833 0.00 0.00 0.00 3.46
792 3760 1.137872 AGAAGAGGAAGGTAGCGCATG 59.862 52.381 11.47 0.00 0.00 4.06
814 3782 3.664798 GCACGTAACGGAGATCTAGATCG 60.665 52.174 23.77 16.74 42.48 3.69
815 3783 3.493877 CACGTAACGGAGATCTAGATCGT 59.506 47.826 23.77 17.33 42.48 3.73
839 3807 2.435422 CATGCATGGTAACTGGACACA 58.565 47.619 19.40 0.00 37.61 3.72
840 3808 1.890876 TGCATGGTAACTGGACACAC 58.109 50.000 0.00 0.00 37.61 3.82
841 3809 0.796312 GCATGGTAACTGGACACACG 59.204 55.000 0.00 0.00 37.61 4.49
842 3810 0.796312 CATGGTAACTGGACACACGC 59.204 55.000 0.00 0.00 37.61 5.34
843 3811 0.394938 ATGGTAACTGGACACACGCA 59.605 50.000 0.00 0.00 37.61 5.24
878 3846 2.352960 GAGCGTTGTGATTGGAGGATTC 59.647 50.000 0.00 0.00 0.00 2.52
912 3880 2.039818 TCGCGCCCCACATATAAAAA 57.960 45.000 0.00 0.00 0.00 1.94
1062 4031 8.672815 AGAAAACAACAAGAAGAAGAAGAAGAG 58.327 33.333 0.00 0.00 0.00 2.85
1430 4513 3.853330 CGCCATCCGCAACGACAG 61.853 66.667 0.00 0.00 37.30 3.51
1589 4678 2.905880 GCCGCCGAGGAGTAGCTA 60.906 66.667 0.91 0.00 45.00 3.32
1643 4732 2.541178 CCGAGTTGCGTCCTGTATCTAC 60.541 54.545 0.00 0.00 38.67 2.59
1644 4733 2.355132 CGAGTTGCGTCCTGTATCTACT 59.645 50.000 0.00 0.00 34.64 2.57
1645 4734 3.558829 CGAGTTGCGTCCTGTATCTACTA 59.441 47.826 0.00 0.00 34.64 1.82
1646 4735 4.552378 CGAGTTGCGTCCTGTATCTACTAC 60.552 50.000 0.00 0.00 34.64 2.73
1647 4736 4.267536 AGTTGCGTCCTGTATCTACTACA 58.732 43.478 0.00 0.00 38.02 2.74
1648 4737 4.888239 AGTTGCGTCCTGTATCTACTACAT 59.112 41.667 0.00 0.00 39.58 2.29
1649 4738 4.830826 TGCGTCCTGTATCTACTACATG 57.169 45.455 0.00 0.00 39.58 3.21
1652 4741 6.002082 TGCGTCCTGTATCTACTACATGTAT 58.998 40.000 5.91 0.00 39.58 2.29
1653 4742 6.148976 TGCGTCCTGTATCTACTACATGTATC 59.851 42.308 5.91 0.00 39.58 2.24
1655 4744 7.548427 GCGTCCTGTATCTACTACATGTATCTA 59.452 40.741 5.91 0.00 39.58 1.98
1656 4745 9.433153 CGTCCTGTATCTACTACATGTATCTAA 57.567 37.037 5.91 0.00 39.58 2.10
1707 4797 2.162008 GTCTGTCGGTAGTGTCCTTCTC 59.838 54.545 0.00 0.00 0.00 2.87
1723 4813 6.485984 TGTCCTTCTCATTCTCGGTAGTATAC 59.514 42.308 0.00 0.00 42.04 1.47
1822 4915 1.450312 GTGGTTCCTGCTGATCCGG 60.450 63.158 0.00 0.00 35.86 5.14
1830 4923 0.462759 CTGCTGATCCGGGGAAACTC 60.463 60.000 0.00 0.00 0.00 3.01
1848 4941 3.074412 ACTCAATCGTTTCGCCTTTCAT 58.926 40.909 0.00 0.00 0.00 2.57
1849 4942 3.125316 ACTCAATCGTTTCGCCTTTCATC 59.875 43.478 0.00 0.00 0.00 2.92
1850 4943 3.334691 TCAATCGTTTCGCCTTTCATCT 58.665 40.909 0.00 0.00 0.00 2.90
1851 4944 4.500127 TCAATCGTTTCGCCTTTCATCTA 58.500 39.130 0.00 0.00 0.00 1.98
1852 4945 5.116180 TCAATCGTTTCGCCTTTCATCTAT 58.884 37.500 0.00 0.00 0.00 1.98
1853 4946 5.234329 TCAATCGTTTCGCCTTTCATCTATC 59.766 40.000 0.00 0.00 0.00 2.08
1854 4947 4.386867 TCGTTTCGCCTTTCATCTATCT 57.613 40.909 0.00 0.00 0.00 1.98
1855 4948 5.509716 TCGTTTCGCCTTTCATCTATCTA 57.490 39.130 0.00 0.00 0.00 1.98
1901 4994 1.213926 AGAGGGCAGATCCAAATCACC 59.786 52.381 0.00 0.00 36.21 4.02
1906 4999 2.883386 GGCAGATCCAAATCACCATCTC 59.117 50.000 0.00 0.00 34.07 2.75
1909 5002 3.564644 CAGATCCAAATCACCATCTCAGC 59.435 47.826 0.00 0.00 34.07 4.26
1978 5071 1.807226 GCTAACCAAATCACCCCGC 59.193 57.895 0.00 0.00 0.00 6.13
1997 5090 1.027255 CGTCCTCTCTTCTCTCCGCA 61.027 60.000 0.00 0.00 0.00 5.69
2026 5119 1.669115 CCTGCACGTCCCACTTCTG 60.669 63.158 0.00 0.00 0.00 3.02
2039 5132 1.667830 CTTCTGAAGGCCGCGTCAA 60.668 57.895 9.57 0.00 0.00 3.18
2055 5148 2.526873 AACTGCTCGACCCCCACT 60.527 61.111 0.00 0.00 0.00 4.00
2063 5156 3.717294 GACCCCCACTGCCGACAT 61.717 66.667 0.00 0.00 0.00 3.06
2124 5217 3.023832 CCGCCCCACTATTTCTTTTCAT 58.976 45.455 0.00 0.00 0.00 2.57
2167 5260 1.068352 AGAGGTTCCAAAGCCACCCT 61.068 55.000 0.00 0.00 0.00 4.34
2168 5261 0.895559 GAGGTTCCAAAGCCACCCTG 60.896 60.000 0.00 0.00 0.00 4.45
2173 5266 2.498056 CCAAAGCCACCCTGCGTTT 61.498 57.895 0.00 0.00 36.02 3.60
2188 5281 4.437239 CTGCGTTTGATCTGGAACTAGAT 58.563 43.478 0.00 0.50 40.02 1.98
2257 5350 3.123620 GAGAAGCGGTGCCAGCTG 61.124 66.667 6.78 6.78 45.31 4.24
2258 5351 3.890936 GAGAAGCGGTGCCAGCTGT 62.891 63.158 13.81 0.00 45.31 4.40
2273 5366 1.890894 CTGTGGTGGACCTAGACGG 59.109 63.158 0.00 0.00 36.82 4.79
2341 5434 0.798389 CGAGATCGAAGTGAAGCGCA 60.798 55.000 11.47 0.00 43.02 6.09
2393 5486 1.596895 GACCTGGAGTCCTGGACGTC 61.597 65.000 34.90 21.21 44.09 4.34
2445 5538 2.028484 GTCGACGGCACACTCCAA 59.972 61.111 0.00 0.00 0.00 3.53
2500 5593 4.326227 TACCGCCACCCCACTCCT 62.326 66.667 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.152525 AGGACGAGGGTGTGTGAGT 60.153 57.895 0.00 0.00 0.00 3.41
1 2 1.290324 CAGGACGAGGGTGTGTGAG 59.710 63.158 0.00 0.00 0.00 3.51
2 3 2.867855 GCAGGACGAGGGTGTGTGA 61.868 63.158 0.00 0.00 0.00 3.58
3 4 2.357517 GCAGGACGAGGGTGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
4 5 3.626924 GGCAGGACGAGGGTGTGT 61.627 66.667 0.00 0.00 0.00 3.72
5 6 2.859273 GATGGCAGGACGAGGGTGTG 62.859 65.000 0.00 0.00 0.00 3.82
6 7 2.607750 ATGGCAGGACGAGGGTGT 60.608 61.111 0.00 0.00 0.00 4.16
7 8 2.187946 GATGGCAGGACGAGGGTG 59.812 66.667 0.00 0.00 0.00 4.61
8 9 3.083997 GGATGGCAGGACGAGGGT 61.084 66.667 0.00 0.00 0.00 4.34
9 10 2.765807 AGGATGGCAGGACGAGGG 60.766 66.667 0.00 0.00 0.00 4.30
10 11 2.801631 GGAGGATGGCAGGACGAGG 61.802 68.421 0.00 0.00 0.00 4.63
11 12 1.743321 GAGGAGGATGGCAGGACGAG 61.743 65.000 0.00 0.00 0.00 4.18
12 13 1.758514 GAGGAGGATGGCAGGACGA 60.759 63.158 0.00 0.00 0.00 4.20
13 14 2.801631 GGAGGAGGATGGCAGGACG 61.802 68.421 0.00 0.00 0.00 4.79
14 15 1.383803 AGGAGGAGGATGGCAGGAC 60.384 63.158 0.00 0.00 0.00 3.85
15 16 1.074926 GAGGAGGAGGATGGCAGGA 60.075 63.158 0.00 0.00 0.00 3.86
16 17 0.693767 AAGAGGAGGAGGATGGCAGG 60.694 60.000 0.00 0.00 0.00 4.85
17 18 1.134159 CAAAGAGGAGGAGGATGGCAG 60.134 57.143 0.00 0.00 0.00 4.85
18 19 0.914644 CAAAGAGGAGGAGGATGGCA 59.085 55.000 0.00 0.00 0.00 4.92
19 20 0.465278 GCAAAGAGGAGGAGGATGGC 60.465 60.000 0.00 0.00 0.00 4.40
20 21 1.211456 AGCAAAGAGGAGGAGGATGG 58.789 55.000 0.00 0.00 0.00 3.51
21 22 3.277715 GAAAGCAAAGAGGAGGAGGATG 58.722 50.000 0.00 0.00 0.00 3.51
22 23 2.240921 GGAAAGCAAAGAGGAGGAGGAT 59.759 50.000 0.00 0.00 0.00 3.24
23 24 1.630878 GGAAAGCAAAGAGGAGGAGGA 59.369 52.381 0.00 0.00 0.00 3.71
24 25 1.340502 GGGAAAGCAAAGAGGAGGAGG 60.341 57.143 0.00 0.00 0.00 4.30
25 26 1.632920 AGGGAAAGCAAAGAGGAGGAG 59.367 52.381 0.00 0.00 0.00 3.69
26 27 1.630878 GAGGGAAAGCAAAGAGGAGGA 59.369 52.381 0.00 0.00 0.00 3.71
27 28 1.340502 GGAGGGAAAGCAAAGAGGAGG 60.341 57.143 0.00 0.00 0.00 4.30
28 29 1.340502 GGGAGGGAAAGCAAAGAGGAG 60.341 57.143 0.00 0.00 0.00 3.69
29 30 0.698818 GGGAGGGAAAGCAAAGAGGA 59.301 55.000 0.00 0.00 0.00 3.71
30 31 0.323816 GGGGAGGGAAAGCAAAGAGG 60.324 60.000 0.00 0.00 0.00 3.69
31 32 0.701147 AGGGGAGGGAAAGCAAAGAG 59.299 55.000 0.00 0.00 0.00 2.85
32 33 0.698818 GAGGGGAGGGAAAGCAAAGA 59.301 55.000 0.00 0.00 0.00 2.52
33 34 0.701147 AGAGGGGAGGGAAAGCAAAG 59.299 55.000 0.00 0.00 0.00 2.77
34 35 1.075536 GAAGAGGGGAGGGAAAGCAAA 59.924 52.381 0.00 0.00 0.00 3.68
35 36 0.698818 GAAGAGGGGAGGGAAAGCAA 59.301 55.000 0.00 0.00 0.00 3.91
36 37 1.208165 GGAAGAGGGGAGGGAAAGCA 61.208 60.000 0.00 0.00 0.00 3.91
37 38 1.208165 TGGAAGAGGGGAGGGAAAGC 61.208 60.000 0.00 0.00 0.00 3.51
38 39 1.213926 CATGGAAGAGGGGAGGGAAAG 59.786 57.143 0.00 0.00 0.00 2.62
39 40 1.298953 CATGGAAGAGGGGAGGGAAA 58.701 55.000 0.00 0.00 0.00 3.13
40 41 0.624500 CCATGGAAGAGGGGAGGGAA 60.625 60.000 5.56 0.00 0.00 3.97
41 42 1.004758 CCATGGAAGAGGGGAGGGA 59.995 63.158 5.56 0.00 0.00 4.20
42 43 2.761465 GCCATGGAAGAGGGGAGGG 61.761 68.421 18.40 0.00 0.00 4.30
43 44 1.695597 AGCCATGGAAGAGGGGAGG 60.696 63.158 18.40 0.00 0.00 4.30
44 45 1.530771 CAGCCATGGAAGAGGGGAG 59.469 63.158 18.40 0.00 0.00 4.30
45 46 3.745546 CAGCCATGGAAGAGGGGA 58.254 61.111 18.40 0.00 0.00 4.81
55 56 2.693762 CCGTCTTGTGCCAGCCATG 61.694 63.158 0.00 0.00 0.00 3.66
56 57 2.202236 ATCCGTCTTGTGCCAGCCAT 62.202 55.000 0.00 0.00 0.00 4.40
57 58 2.894257 ATCCGTCTTGTGCCAGCCA 61.894 57.895 0.00 0.00 0.00 4.75
58 59 2.045926 ATCCGTCTTGTGCCAGCC 60.046 61.111 0.00 0.00 0.00 4.85
59 60 2.401766 CCATCCGTCTTGTGCCAGC 61.402 63.158 0.00 0.00 0.00 4.85
60 61 1.746615 CCCATCCGTCTTGTGCCAG 60.747 63.158 0.00 0.00 0.00 4.85
61 62 2.184020 CTCCCATCCGTCTTGTGCCA 62.184 60.000 0.00 0.00 0.00 4.92
62 63 1.450312 CTCCCATCCGTCTTGTGCC 60.450 63.158 0.00 0.00 0.00 5.01
63 64 1.450312 CCTCCCATCCGTCTTGTGC 60.450 63.158 0.00 0.00 0.00 4.57
64 65 1.450312 GCCTCCCATCCGTCTTGTG 60.450 63.158 0.00 0.00 0.00 3.33
65 66 1.903877 CTGCCTCCCATCCGTCTTGT 61.904 60.000 0.00 0.00 0.00 3.16
66 67 1.153289 CTGCCTCCCATCCGTCTTG 60.153 63.158 0.00 0.00 0.00 3.02
67 68 3.036429 GCTGCCTCCCATCCGTCTT 62.036 63.158 0.00 0.00 0.00 3.01
68 69 3.474570 GCTGCCTCCCATCCGTCT 61.475 66.667 0.00 0.00 0.00 4.18
69 70 4.899239 CGCTGCCTCCCATCCGTC 62.899 72.222 0.00 0.00 0.00 4.79
81 82 1.505477 GGATCTTGATGAGGCGCTGC 61.505 60.000 7.64 0.00 0.00 5.25
82 83 0.179065 TGGATCTTGATGAGGCGCTG 60.179 55.000 7.64 0.00 0.00 5.18
83 84 0.106335 CTGGATCTTGATGAGGCGCT 59.894 55.000 7.64 0.00 0.00 5.92
84 85 0.105593 TCTGGATCTTGATGAGGCGC 59.894 55.000 0.00 0.00 0.00 6.53
85 86 2.686235 GATCTGGATCTTGATGAGGCG 58.314 52.381 3.58 0.00 35.04 5.52
86 87 2.612471 CCGATCTGGATCTTGATGAGGC 60.612 54.545 8.65 0.00 42.00 4.70
87 88 2.028294 CCCGATCTGGATCTTGATGAGG 60.028 54.545 0.00 8.32 42.00 3.86
88 89 2.612471 GCCCGATCTGGATCTTGATGAG 60.612 54.545 7.45 1.68 42.00 2.90
89 90 1.345741 GCCCGATCTGGATCTTGATGA 59.654 52.381 7.45 0.00 42.00 2.92
90 91 1.071228 TGCCCGATCTGGATCTTGATG 59.929 52.381 7.45 0.00 42.00 3.07
91 92 1.347050 CTGCCCGATCTGGATCTTGAT 59.653 52.381 7.45 0.00 42.00 2.57
92 93 0.755079 CTGCCCGATCTGGATCTTGA 59.245 55.000 7.45 0.00 42.00 3.02
93 94 0.250209 CCTGCCCGATCTGGATCTTG 60.250 60.000 7.45 1.70 42.00 3.02
94 95 1.414061 CCCTGCCCGATCTGGATCTT 61.414 60.000 7.45 0.00 42.00 2.40
95 96 1.840650 CCCTGCCCGATCTGGATCT 60.841 63.158 7.45 0.00 42.00 2.75
96 97 1.197430 ATCCCTGCCCGATCTGGATC 61.197 60.000 7.45 0.83 42.00 3.36
97 98 1.151943 ATCCCTGCCCGATCTGGAT 60.152 57.895 7.45 0.00 42.00 3.41
98 99 1.838846 GATCCCTGCCCGATCTGGA 60.839 63.158 7.45 0.00 42.00 3.86
99 100 1.825281 GAGATCCCTGCCCGATCTGG 61.825 65.000 10.92 0.00 45.11 3.86
100 101 1.670590 GAGATCCCTGCCCGATCTG 59.329 63.158 10.92 0.00 45.11 2.90
102 103 0.894184 TACGAGATCCCTGCCCGATC 60.894 60.000 0.00 0.00 37.07 3.69
103 104 0.896019 CTACGAGATCCCTGCCCGAT 60.896 60.000 0.00 0.00 0.00 4.18
104 105 1.528542 CTACGAGATCCCTGCCCGA 60.529 63.158 0.00 0.00 0.00 5.14
105 106 2.565645 CCTACGAGATCCCTGCCCG 61.566 68.421 0.00 0.00 0.00 6.13
106 107 1.152525 TCCTACGAGATCCCTGCCC 60.153 63.158 0.00 0.00 0.00 5.36
107 108 1.182385 CCTCCTACGAGATCCCTGCC 61.182 65.000 0.00 0.00 38.52 4.85
108 109 0.178987 TCCTCCTACGAGATCCCTGC 60.179 60.000 0.00 0.00 38.52 4.85
109 110 2.235016 CTTCCTCCTACGAGATCCCTG 58.765 57.143 0.00 0.00 38.52 4.45
110 111 1.146152 CCTTCCTCCTACGAGATCCCT 59.854 57.143 0.00 0.00 38.52 4.20
111 112 1.623163 CCTTCCTCCTACGAGATCCC 58.377 60.000 0.00 0.00 38.52 3.85
112 113 0.963225 GCCTTCCTCCTACGAGATCC 59.037 60.000 0.00 0.00 38.52 3.36
113 114 0.963225 GGCCTTCCTCCTACGAGATC 59.037 60.000 0.00 0.00 38.52 2.75
114 115 0.824182 CGGCCTTCCTCCTACGAGAT 60.824 60.000 0.00 0.00 38.52 2.75
115 116 1.453379 CGGCCTTCCTCCTACGAGA 60.453 63.158 0.00 0.00 38.52 4.04
116 117 1.448922 CTCGGCCTTCCTCCTACGAG 61.449 65.000 0.00 0.00 41.20 4.18
117 118 1.453379 CTCGGCCTTCCTCCTACGA 60.453 63.158 0.00 0.00 0.00 3.43
118 119 2.491022 CCTCGGCCTTCCTCCTACG 61.491 68.421 0.00 0.00 0.00 3.51
119 120 2.134933 CCCTCGGCCTTCCTCCTAC 61.135 68.421 0.00 0.00 0.00 3.18
120 121 2.282446 CCCTCGGCCTTCCTCCTA 59.718 66.667 0.00 0.00 0.00 2.94
121 122 4.012721 ACCCTCGGCCTTCCTCCT 62.013 66.667 0.00 0.00 0.00 3.69
122 123 3.787001 CACCCTCGGCCTTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
123 124 3.787001 CCACCCTCGGCCTTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
124 125 4.658786 ACCACCCTCGGCCTTCCT 62.659 66.667 0.00 0.00 0.00 3.36
125 126 4.410400 CACCACCCTCGGCCTTCC 62.410 72.222 0.00 0.00 0.00 3.46
126 127 4.410400 CCACCACCCTCGGCCTTC 62.410 72.222 0.00 0.00 0.00 3.46
156 157 4.845580 CTTCGCCTGCCTCCGCAT 62.846 66.667 0.00 0.00 46.11 4.73
159 160 4.082523 TTCCTTCGCCTGCCTCCG 62.083 66.667 0.00 0.00 0.00 4.63
160 161 2.124942 CTTCCTTCGCCTGCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
161 162 1.743252 CACTTCCTTCGCCTGCCTC 60.743 63.158 0.00 0.00 0.00 4.70
162 163 2.348998 CACTTCCTTCGCCTGCCT 59.651 61.111 0.00 0.00 0.00 4.75
163 164 2.032681 ACACTTCCTTCGCCTGCC 59.967 61.111 0.00 0.00 0.00 4.85
164 165 1.294659 CTGACACTTCCTTCGCCTGC 61.295 60.000 0.00 0.00 0.00 4.85
165 166 1.294659 GCTGACACTTCCTTCGCCTG 61.295 60.000 0.00 0.00 0.00 4.85
166 167 1.004440 GCTGACACTTCCTTCGCCT 60.004 57.895 0.00 0.00 0.00 5.52
167 168 1.294659 CTGCTGACACTTCCTTCGCC 61.295 60.000 0.00 0.00 0.00 5.54
168 169 1.905922 GCTGCTGACACTTCCTTCGC 61.906 60.000 0.00 0.00 0.00 4.70
169 170 1.621301 CGCTGCTGACACTTCCTTCG 61.621 60.000 0.00 0.00 0.00 3.79
170 171 0.319900 TCGCTGCTGACACTTCCTTC 60.320 55.000 0.00 0.00 0.00 3.46
171 172 0.320247 CTCGCTGCTGACACTTCCTT 60.320 55.000 0.00 0.00 0.00 3.36
172 173 1.291588 CTCGCTGCTGACACTTCCT 59.708 57.895 0.00 0.00 0.00 3.36
173 174 2.386660 GCTCGCTGCTGACACTTCC 61.387 63.158 0.00 0.00 38.95 3.46
174 175 1.624865 CTGCTCGCTGCTGACACTTC 61.625 60.000 0.00 0.00 42.27 3.01
175 176 1.667191 CTGCTCGCTGCTGACACTT 60.667 57.895 0.00 0.00 42.27 3.16
176 177 2.048409 CTGCTCGCTGCTGACACT 60.048 61.111 0.00 0.00 42.27 3.55
177 178 3.117171 CCTGCTCGCTGCTGACAC 61.117 66.667 0.00 0.00 42.27 3.67
178 179 4.383861 CCCTGCTCGCTGCTGACA 62.384 66.667 0.00 0.00 42.27 3.58
209 210 4.521062 CTTCCTCTGCCCGCCTCG 62.521 72.222 0.00 0.00 0.00 4.63
210 211 4.168291 CCTTCCTCTGCCCGCCTC 62.168 72.222 0.00 0.00 0.00 4.70
215 216 4.120755 CTGCCCCTTCCTCTGCCC 62.121 72.222 0.00 0.00 0.00 5.36
216 217 4.811364 GCTGCCCCTTCCTCTGCC 62.811 72.222 0.00 0.00 0.00 4.85
217 218 3.726144 AGCTGCCCCTTCCTCTGC 61.726 66.667 0.00 0.00 0.00 4.26
218 219 2.271497 CAGCTGCCCCTTCCTCTG 59.729 66.667 0.00 0.00 0.00 3.35
219 220 3.726144 GCAGCTGCCCCTTCCTCT 61.726 66.667 28.76 0.00 34.31 3.69
242 243 4.410400 CTCCAGGGTTCACCGCCC 62.410 72.222 0.00 0.00 46.96 6.13
243 244 3.316573 CTCTCCAGGGTTCACCGCC 62.317 68.421 0.00 0.00 46.96 6.13
244 245 2.266055 CTCTCCAGGGTTCACCGC 59.734 66.667 0.00 0.00 46.96 5.68
245 246 1.609501 TCCTCTCCAGGGTTCACCG 60.610 63.158 0.00 0.00 46.96 4.94
246 247 1.554583 GGTCCTCTCCAGGGTTCACC 61.555 65.000 0.00 0.00 40.80 4.02
247 248 1.889530 CGGTCCTCTCCAGGGTTCAC 61.890 65.000 0.00 0.00 40.80 3.18
248 249 1.609501 CGGTCCTCTCCAGGGTTCA 60.610 63.158 0.00 0.00 40.80 3.18
249 250 1.305046 TCGGTCCTCTCCAGGGTTC 60.305 63.158 0.00 0.00 40.80 3.62
250 251 1.305381 CTCGGTCCTCTCCAGGGTT 60.305 63.158 0.00 0.00 40.80 4.11
251 252 2.360980 CTCGGTCCTCTCCAGGGT 59.639 66.667 0.00 0.00 40.80 4.34
252 253 3.151022 GCTCGGTCCTCTCCAGGG 61.151 72.222 0.00 0.00 40.80 4.45
253 254 3.522731 CGCTCGGTCCTCTCCAGG 61.523 72.222 0.00 0.00 42.01 4.45
254 255 3.522731 CCGCTCGGTCCTCTCCAG 61.523 72.222 0.00 0.00 0.00 3.86
257 258 3.532155 ATGCCGCTCGGTCCTCTC 61.532 66.667 10.24 0.00 37.65 3.20
258 259 3.842923 CATGCCGCTCGGTCCTCT 61.843 66.667 10.24 0.00 37.65 3.69
259 260 3.781770 CTCATGCCGCTCGGTCCTC 62.782 68.421 10.24 0.00 37.65 3.71
260 261 3.842923 CTCATGCCGCTCGGTCCT 61.843 66.667 10.24 0.00 37.65 3.85
261 262 2.650813 ATTCTCATGCCGCTCGGTCC 62.651 60.000 10.24 0.00 37.65 4.46
262 263 0.032130 TATTCTCATGCCGCTCGGTC 59.968 55.000 10.24 3.28 37.65 4.79
263 264 0.032678 CTATTCTCATGCCGCTCGGT 59.967 55.000 10.24 0.00 37.65 4.69
264 265 0.668706 CCTATTCTCATGCCGCTCGG 60.669 60.000 3.56 3.56 38.57 4.63
265 266 0.315251 TCCTATTCTCATGCCGCTCG 59.685 55.000 0.00 0.00 0.00 5.03
266 267 1.615883 TCTCCTATTCTCATGCCGCTC 59.384 52.381 0.00 0.00 0.00 5.03
267 268 1.709578 TCTCCTATTCTCATGCCGCT 58.290 50.000 0.00 0.00 0.00 5.52
268 269 2.533266 TTCTCCTATTCTCATGCCGC 57.467 50.000 0.00 0.00 0.00 6.53
269 270 2.797156 CGTTTCTCCTATTCTCATGCCG 59.203 50.000 0.00 0.00 0.00 5.69
270 271 4.054671 CTCGTTTCTCCTATTCTCATGCC 58.945 47.826 0.00 0.00 0.00 4.40
271 272 4.938080 TCTCGTTTCTCCTATTCTCATGC 58.062 43.478 0.00 0.00 0.00 4.06
272 273 5.855925 CGATCTCGTTTCTCCTATTCTCATG 59.144 44.000 0.00 0.00 34.11 3.07
273 274 5.765677 TCGATCTCGTTTCTCCTATTCTCAT 59.234 40.000 0.00 0.00 40.80 2.90
274 275 5.123936 TCGATCTCGTTTCTCCTATTCTCA 58.876 41.667 0.00 0.00 40.80 3.27
275 276 5.334569 CCTCGATCTCGTTTCTCCTATTCTC 60.335 48.000 0.00 0.00 40.80 2.87
276 277 4.517453 CCTCGATCTCGTTTCTCCTATTCT 59.483 45.833 0.00 0.00 40.80 2.40
277 278 4.320641 CCCTCGATCTCGTTTCTCCTATTC 60.321 50.000 0.00 0.00 40.80 1.75
278 279 3.570550 CCCTCGATCTCGTTTCTCCTATT 59.429 47.826 0.00 0.00 40.80 1.73
279 280 3.150767 CCCTCGATCTCGTTTCTCCTAT 58.849 50.000 0.00 0.00 40.80 2.57
280 281 2.172082 TCCCTCGATCTCGTTTCTCCTA 59.828 50.000 0.00 0.00 40.80 2.94
281 282 1.064611 TCCCTCGATCTCGTTTCTCCT 60.065 52.381 0.00 0.00 40.80 3.69
282 283 1.335496 CTCCCTCGATCTCGTTTCTCC 59.665 57.143 0.00 0.00 40.80 3.71
283 284 2.289547 CTCTCCCTCGATCTCGTTTCTC 59.710 54.545 0.00 0.00 40.80 2.87
284 285 2.294074 CTCTCCCTCGATCTCGTTTCT 58.706 52.381 0.00 0.00 40.80 2.52
285 286 1.335496 CCTCTCCCTCGATCTCGTTTC 59.665 57.143 0.00 0.00 40.80 2.78
286 287 1.394618 CCTCTCCCTCGATCTCGTTT 58.605 55.000 0.00 0.00 40.80 3.60
287 288 0.466555 CCCTCTCCCTCGATCTCGTT 60.467 60.000 0.00 0.00 40.80 3.85
288 289 1.149627 CCCTCTCCCTCGATCTCGT 59.850 63.158 0.00 0.00 40.80 4.18
289 290 0.605319 CTCCCTCTCCCTCGATCTCG 60.605 65.000 0.00 0.00 41.45 4.04
290 291 0.476771 ACTCCCTCTCCCTCGATCTC 59.523 60.000 0.00 0.00 0.00 2.75
291 292 0.930726 AACTCCCTCTCCCTCGATCT 59.069 55.000 0.00 0.00 0.00 2.75
292 293 1.036707 CAACTCCCTCTCCCTCGATC 58.963 60.000 0.00 0.00 0.00 3.69
293 294 0.397816 CCAACTCCCTCTCCCTCGAT 60.398 60.000 0.00 0.00 0.00 3.59
294 295 1.000486 CCAACTCCCTCTCCCTCGA 60.000 63.158 0.00 0.00 0.00 4.04
295 296 0.397816 ATCCAACTCCCTCTCCCTCG 60.398 60.000 0.00 0.00 0.00 4.63
296 297 1.419381 GATCCAACTCCCTCTCCCTC 58.581 60.000 0.00 0.00 0.00 4.30
297 298 0.397816 CGATCCAACTCCCTCTCCCT 60.398 60.000 0.00 0.00 0.00 4.20
298 299 0.397254 TCGATCCAACTCCCTCTCCC 60.397 60.000 0.00 0.00 0.00 4.30
299 300 1.036707 CTCGATCCAACTCCCTCTCC 58.963 60.000 0.00 0.00 0.00 3.71
300 301 0.387565 GCTCGATCCAACTCCCTCTC 59.612 60.000 0.00 0.00 0.00 3.20
301 302 1.388065 CGCTCGATCCAACTCCCTCT 61.388 60.000 0.00 0.00 0.00 3.69
302 303 1.066587 CGCTCGATCCAACTCCCTC 59.933 63.158 0.00 0.00 0.00 4.30
303 304 0.757188 ATCGCTCGATCCAACTCCCT 60.757 55.000 0.00 0.00 0.00 4.20
304 305 0.959553 TATCGCTCGATCCAACTCCC 59.040 55.000 8.14 0.00 36.17 4.30
305 306 1.663445 CGTATCGCTCGATCCAACTCC 60.663 57.143 8.14 0.00 36.17 3.85
306 307 1.663445 CCGTATCGCTCGATCCAACTC 60.663 57.143 8.14 0.00 36.17 3.01
307 308 0.311165 CCGTATCGCTCGATCCAACT 59.689 55.000 8.14 0.00 36.17 3.16
308 309 0.309922 TCCGTATCGCTCGATCCAAC 59.690 55.000 8.14 1.24 36.17 3.77
309 310 0.591659 CTCCGTATCGCTCGATCCAA 59.408 55.000 8.14 0.00 36.17 3.53
310 311 1.235281 CCTCCGTATCGCTCGATCCA 61.235 60.000 8.14 0.00 36.17 3.41
311 312 1.502640 CCTCCGTATCGCTCGATCC 59.497 63.158 8.14 0.00 36.17 3.36
312 313 0.954449 TCCCTCCGTATCGCTCGATC 60.954 60.000 8.14 0.71 36.17 3.69
313 314 0.536687 TTCCCTCCGTATCGCTCGAT 60.537 55.000 9.81 9.81 38.54 3.59
314 315 0.749091 TTTCCCTCCGTATCGCTCGA 60.749 55.000 0.00 0.00 0.00 4.04
315 316 0.101759 TTTTCCCTCCGTATCGCTCG 59.898 55.000 0.00 0.00 0.00 5.03
316 317 2.304751 TTTTTCCCTCCGTATCGCTC 57.695 50.000 0.00 0.00 0.00 5.03
345 346 1.106944 CACCCTCCACGCTGGTTTTT 61.107 55.000 4.33 0.00 39.03 1.94
346 347 1.528309 CACCCTCCACGCTGGTTTT 60.528 57.895 4.33 0.00 39.03 2.43
347 348 2.113139 CACCCTCCACGCTGGTTT 59.887 61.111 4.33 0.00 39.03 3.27
348 349 3.168528 ACACCCTCCACGCTGGTT 61.169 61.111 4.33 0.00 39.03 3.67
349 350 3.941188 CACACCCTCCACGCTGGT 61.941 66.667 4.33 0.00 39.03 4.00
350 351 2.959484 ATCACACCCTCCACGCTGG 61.959 63.158 0.00 0.00 39.43 4.85
351 352 1.742880 CATCACACCCTCCACGCTG 60.743 63.158 0.00 0.00 0.00 5.18
352 353 2.665000 CATCACACCCTCCACGCT 59.335 61.111 0.00 0.00 0.00 5.07
353 354 2.436646 CCATCACACCCTCCACGC 60.437 66.667 0.00 0.00 0.00 5.34
354 355 0.673644 GTTCCATCACACCCTCCACG 60.674 60.000 0.00 0.00 0.00 4.94
355 356 0.673644 CGTTCCATCACACCCTCCAC 60.674 60.000 0.00 0.00 0.00 4.02
356 357 0.834261 TCGTTCCATCACACCCTCCA 60.834 55.000 0.00 0.00 0.00 3.86
357 358 0.323629 TTCGTTCCATCACACCCTCC 59.676 55.000 0.00 0.00 0.00 4.30
358 359 2.178912 TTTCGTTCCATCACACCCTC 57.821 50.000 0.00 0.00 0.00 4.30
359 360 2.649531 TTTTCGTTCCATCACACCCT 57.350 45.000 0.00 0.00 0.00 4.34
378 379 3.197983 TCCCACCATTTTCGTTGGTTTTT 59.802 39.130 0.00 0.00 45.19 1.94
379 380 2.766828 TCCCACCATTTTCGTTGGTTTT 59.233 40.909 0.00 0.00 45.19 2.43
380 381 2.389715 TCCCACCATTTTCGTTGGTTT 58.610 42.857 0.00 0.00 45.19 3.27
381 382 2.074729 TCCCACCATTTTCGTTGGTT 57.925 45.000 0.00 0.00 45.19 3.67
383 384 2.166829 TCATCCCACCATTTTCGTTGG 58.833 47.619 0.00 0.00 40.26 3.77
384 385 3.932545 TTCATCCCACCATTTTCGTTG 57.067 42.857 0.00 0.00 0.00 4.10
385 386 4.946478 TTTTCATCCCACCATTTTCGTT 57.054 36.364 0.00 0.00 0.00 3.85
386 387 4.946478 TTTTTCATCCCACCATTTTCGT 57.054 36.364 0.00 0.00 0.00 3.85
406 407 5.053811 GTCCCATCATTTTCGTTGGTTTTT 58.946 37.500 0.00 0.00 0.00 1.94
407 408 4.627058 GTCCCATCATTTTCGTTGGTTTT 58.373 39.130 0.00 0.00 0.00 2.43
408 409 3.305064 CGTCCCATCATTTTCGTTGGTTT 60.305 43.478 0.00 0.00 0.00 3.27
409 410 2.227865 CGTCCCATCATTTTCGTTGGTT 59.772 45.455 0.00 0.00 0.00 3.67
410 411 1.810151 CGTCCCATCATTTTCGTTGGT 59.190 47.619 0.00 0.00 0.00 3.67
411 412 2.080693 TCGTCCCATCATTTTCGTTGG 58.919 47.619 0.00 0.00 0.00 3.77
412 413 3.822594 TTCGTCCCATCATTTTCGTTG 57.177 42.857 0.00 0.00 0.00 4.10
413 414 4.839668 TTTTCGTCCCATCATTTTCGTT 57.160 36.364 0.00 0.00 0.00 3.85
414 415 4.839668 TTTTTCGTCCCATCATTTTCGT 57.160 36.364 0.00 0.00 0.00 3.85
441 442 5.852282 ACAGCAGTTGGTGAATAGTTTTT 57.148 34.783 17.29 0.00 45.66 1.94
442 443 6.296026 TCTACAGCAGTTGGTGAATAGTTTT 58.704 36.000 17.29 0.00 45.66 2.43
443 444 5.865085 TCTACAGCAGTTGGTGAATAGTTT 58.135 37.500 17.29 0.00 45.66 2.66
444 445 5.246203 TCTCTACAGCAGTTGGTGAATAGTT 59.754 40.000 17.29 0.00 45.66 2.24
445 446 4.772624 TCTCTACAGCAGTTGGTGAATAGT 59.227 41.667 17.29 0.00 45.66 2.12
446 447 5.330455 TCTCTACAGCAGTTGGTGAATAG 57.670 43.478 17.29 9.69 45.66 1.73
447 448 5.163405 GGATCTCTACAGCAGTTGGTGAATA 60.163 44.000 17.29 0.72 45.66 1.75
448 449 4.383552 GGATCTCTACAGCAGTTGGTGAAT 60.384 45.833 17.29 0.00 45.66 2.57
449 450 3.055819 GGATCTCTACAGCAGTTGGTGAA 60.056 47.826 17.29 2.81 45.66 3.18
450 451 2.497675 GGATCTCTACAGCAGTTGGTGA 59.502 50.000 17.29 1.71 45.66 4.02
452 453 2.826488 AGGATCTCTACAGCAGTTGGT 58.174 47.619 0.00 0.00 0.00 3.67
453 454 4.343526 ACATAGGATCTCTACAGCAGTTGG 59.656 45.833 0.00 0.00 0.00 3.77
454 455 5.508825 GGACATAGGATCTCTACAGCAGTTG 60.509 48.000 0.00 0.00 0.00 3.16
455 456 4.586841 GGACATAGGATCTCTACAGCAGTT 59.413 45.833 0.00 0.00 0.00 3.16
456 457 4.148838 GGACATAGGATCTCTACAGCAGT 58.851 47.826 0.00 0.00 0.00 4.40
457 458 3.509575 GGGACATAGGATCTCTACAGCAG 59.490 52.174 0.00 0.00 0.00 4.24
458 459 3.141083 AGGGACATAGGATCTCTACAGCA 59.859 47.826 0.00 0.00 0.00 4.41
459 460 3.773560 AGGGACATAGGATCTCTACAGC 58.226 50.000 0.00 0.00 0.00 4.40
462 463 5.014333 TCCAGTAGGGACATAGGATCTCTAC 59.986 48.000 4.21 4.21 46.49 2.59
463 464 5.170959 TCCAGTAGGGACATAGGATCTCTA 58.829 45.833 0.00 0.00 42.15 2.43
464 465 3.990933 TCCAGTAGGGACATAGGATCTCT 59.009 47.826 0.00 0.00 42.15 3.10
465 466 4.390129 TCCAGTAGGGACATAGGATCTC 57.610 50.000 0.00 0.00 42.15 2.75
476 477 1.623811 GCTGTTTCTGTCCAGTAGGGA 59.376 52.381 0.00 0.00 45.89 4.20
477 478 1.339151 GGCTGTTTCTGTCCAGTAGGG 60.339 57.143 0.00 0.00 34.83 3.53
478 479 1.347707 TGGCTGTTTCTGTCCAGTAGG 59.652 52.381 0.00 0.00 0.00 3.18
479 480 2.613977 CCTGGCTGTTTCTGTCCAGTAG 60.614 54.545 6.41 0.00 43.38 2.57
480 481 1.347707 CCTGGCTGTTTCTGTCCAGTA 59.652 52.381 6.41 0.00 43.38 2.74
481 482 0.109342 CCTGGCTGTTTCTGTCCAGT 59.891 55.000 6.41 0.00 43.38 4.00
482 483 0.607489 CCCTGGCTGTTTCTGTCCAG 60.607 60.000 0.00 0.00 44.25 3.86
483 484 1.352622 ACCCTGGCTGTTTCTGTCCA 61.353 55.000 0.00 0.00 0.00 4.02
484 485 0.606673 GACCCTGGCTGTTTCTGTCC 60.607 60.000 0.00 0.00 0.00 4.02
485 486 0.606673 GGACCCTGGCTGTTTCTGTC 60.607 60.000 0.00 0.00 0.00 3.51
486 487 1.456287 GGACCCTGGCTGTTTCTGT 59.544 57.895 0.00 0.00 0.00 3.41
487 488 1.303643 GGGACCCTGGCTGTTTCTG 60.304 63.158 2.09 0.00 0.00 3.02
488 489 3.171348 GGGACCCTGGCTGTTTCT 58.829 61.111 2.09 0.00 0.00 2.52
520 521 2.047844 TCCGTCTGCAGCTTCAGC 60.048 61.111 9.47 3.34 42.49 4.26
521 522 0.735632 GTCTCCGTCTGCAGCTTCAG 60.736 60.000 9.47 7.08 35.46 3.02
522 523 1.290324 GTCTCCGTCTGCAGCTTCA 59.710 57.895 9.47 0.00 0.00 3.02
523 524 1.803519 CGTCTCCGTCTGCAGCTTC 60.804 63.158 9.47 0.96 0.00 3.86
524 525 2.259818 CGTCTCCGTCTGCAGCTT 59.740 61.111 9.47 0.00 0.00 3.74
525 526 3.753434 CCGTCTCCGTCTGCAGCT 61.753 66.667 9.47 0.00 0.00 4.24
526 527 3.691744 CTCCGTCTCCGTCTGCAGC 62.692 68.421 9.47 3.23 0.00 5.25
527 528 2.487428 CTCCGTCTCCGTCTGCAG 59.513 66.667 7.63 7.63 0.00 4.41
528 529 3.062466 CCTCCGTCTCCGTCTGCA 61.062 66.667 0.00 0.00 0.00 4.41
529 530 2.750637 TCCTCCGTCTCCGTCTGC 60.751 66.667 0.00 0.00 0.00 4.26
530 531 2.115911 CCTCCTCCGTCTCCGTCTG 61.116 68.421 0.00 0.00 0.00 3.51
531 532 2.272797 CCTCCTCCGTCTCCGTCT 59.727 66.667 0.00 0.00 0.00 4.18
532 533 2.114051 GTCCTCCTCCGTCTCCGTC 61.114 68.421 0.00 0.00 0.00 4.79
533 534 2.045143 GTCCTCCTCCGTCTCCGT 60.045 66.667 0.00 0.00 0.00 4.69
534 535 2.829458 GGTCCTCCTCCGTCTCCG 60.829 72.222 0.00 0.00 0.00 4.63
535 536 2.442458 GGGTCCTCCTCCGTCTCC 60.442 72.222 0.00 0.00 0.00 3.71
536 537 1.305046 TTGGGTCCTCCTCCGTCTC 60.305 63.158 0.00 0.00 36.20 3.36
537 538 1.609794 GTTGGGTCCTCCTCCGTCT 60.610 63.158 0.00 0.00 36.20 4.18
538 539 2.979649 GTTGGGTCCTCCTCCGTC 59.020 66.667 0.00 0.00 36.20 4.79
539 540 2.995574 CGTTGGGTCCTCCTCCGT 60.996 66.667 0.00 0.00 36.20 4.69
540 541 2.995574 ACGTTGGGTCCTCCTCCG 60.996 66.667 0.00 0.00 36.20 4.63
541 542 2.663196 CACGTTGGGTCCTCCTCC 59.337 66.667 0.00 0.00 36.20 4.30
542 543 2.663196 CCACGTTGGGTCCTCCTC 59.337 66.667 0.00 0.00 32.67 3.71
543 544 3.637273 GCCACGTTGGGTCCTCCT 61.637 66.667 6.23 0.00 38.19 3.69
544 545 4.717313 GGCCACGTTGGGTCCTCC 62.717 72.222 0.00 0.00 38.19 4.30
553 554 4.071875 TACATCGCCGGCCACGTT 62.072 61.111 23.46 3.95 38.78 3.99
554 555 4.508128 CTACATCGCCGGCCACGT 62.508 66.667 23.46 17.40 38.78 4.49
555 556 4.201679 TCTACATCGCCGGCCACG 62.202 66.667 23.46 11.75 40.55 4.94
556 557 2.279517 CTCTACATCGCCGGCCAC 60.280 66.667 23.46 0.00 0.00 5.01
557 558 3.536917 CCTCTACATCGCCGGCCA 61.537 66.667 23.46 9.24 0.00 5.36
558 559 2.306255 TTTCCTCTACATCGCCGGCC 62.306 60.000 23.46 2.84 0.00 6.13
559 560 0.876342 CTTTCCTCTACATCGCCGGC 60.876 60.000 19.07 19.07 0.00 6.13
560 561 0.876342 GCTTTCCTCTACATCGCCGG 60.876 60.000 0.00 0.00 0.00 6.13
561 562 0.179111 TGCTTTCCTCTACATCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
562 563 1.576356 CTGCTTTCCTCTACATCGCC 58.424 55.000 0.00 0.00 0.00 5.54
563 564 1.137086 TCCTGCTTTCCTCTACATCGC 59.863 52.381 0.00 0.00 0.00 4.58
564 565 2.690497 TCTCCTGCTTTCCTCTACATCG 59.310 50.000 0.00 0.00 0.00 3.84
565 566 3.704061 ACTCTCCTGCTTTCCTCTACATC 59.296 47.826 0.00 0.00 0.00 3.06
566 567 3.718723 ACTCTCCTGCTTTCCTCTACAT 58.281 45.455 0.00 0.00 0.00 2.29
567 568 3.176924 ACTCTCCTGCTTTCCTCTACA 57.823 47.619 0.00 0.00 0.00 2.74
568 569 4.274978 ACTACTCTCCTGCTTTCCTCTAC 58.725 47.826 0.00 0.00 0.00 2.59
569 570 4.228666 AGACTACTCTCCTGCTTTCCTCTA 59.771 45.833 0.00 0.00 0.00 2.43
570 571 3.011257 AGACTACTCTCCTGCTTTCCTCT 59.989 47.826 0.00 0.00 0.00 3.69
571 572 3.361786 AGACTACTCTCCTGCTTTCCTC 58.638 50.000 0.00 0.00 0.00 3.71
572 573 3.361786 GAGACTACTCTCCTGCTTTCCT 58.638 50.000 0.00 0.00 37.56 3.36
573 574 3.793797 GAGACTACTCTCCTGCTTTCC 57.206 52.381 0.00 0.00 37.56 3.13
582 583 2.566913 TCGCATCTGGAGACTACTCTC 58.433 52.381 0.00 0.00 42.25 3.20
583 584 2.685897 GTTCGCATCTGGAGACTACTCT 59.314 50.000 0.00 0.00 42.28 3.24
584 585 2.423892 TGTTCGCATCTGGAGACTACTC 59.576 50.000 0.00 0.00 41.94 2.59
585 586 2.425312 CTGTTCGCATCTGGAGACTACT 59.575 50.000 0.00 0.00 0.00 2.57
586 587 2.164624 ACTGTTCGCATCTGGAGACTAC 59.835 50.000 0.00 0.00 0.00 2.73
587 588 2.447443 ACTGTTCGCATCTGGAGACTA 58.553 47.619 0.00 0.00 0.00 2.59
588 589 1.261480 ACTGTTCGCATCTGGAGACT 58.739 50.000 0.00 0.00 0.00 3.24
589 590 1.728971 CAACTGTTCGCATCTGGAGAC 59.271 52.381 0.00 0.00 0.00 3.36
590 591 1.338105 CCAACTGTTCGCATCTGGAGA 60.338 52.381 0.00 0.00 33.10 3.71
591 592 1.081892 CCAACTGTTCGCATCTGGAG 58.918 55.000 0.00 0.00 33.10 3.86
592 593 0.321564 CCCAACTGTTCGCATCTGGA 60.322 55.000 0.00 0.00 33.10 3.86
593 594 0.321564 TCCCAACTGTTCGCATCTGG 60.322 55.000 0.00 0.00 0.00 3.86
594 595 1.081892 CTCCCAACTGTTCGCATCTG 58.918 55.000 0.00 0.00 0.00 2.90
595 596 0.674895 GCTCCCAACTGTTCGCATCT 60.675 55.000 0.00 0.00 0.00 2.90
596 597 1.796796 GCTCCCAACTGTTCGCATC 59.203 57.895 0.00 0.00 0.00 3.91
597 598 2.034879 CGCTCCCAACTGTTCGCAT 61.035 57.895 0.00 0.00 0.00 4.73
598 599 2.652382 TTCGCTCCCAACTGTTCGCA 62.652 55.000 0.00 0.00 0.00 5.10
599 600 1.901650 CTTCGCTCCCAACTGTTCGC 61.902 60.000 0.00 0.00 0.00 4.70
600 601 1.901650 GCTTCGCTCCCAACTGTTCG 61.902 60.000 0.00 0.00 0.00 3.95
601 602 1.869690 GCTTCGCTCCCAACTGTTC 59.130 57.895 0.00 0.00 0.00 3.18
602 603 1.961277 CGCTTCGCTCCCAACTGTT 60.961 57.895 0.00 0.00 0.00 3.16
603 604 2.357517 CGCTTCGCTCCCAACTGT 60.358 61.111 0.00 0.00 0.00 3.55
604 605 2.357517 ACGCTTCGCTCCCAACTG 60.358 61.111 0.00 0.00 0.00 3.16
605 606 1.248785 TAGACGCTTCGCTCCCAACT 61.249 55.000 0.00 0.00 0.00 3.16
606 607 0.389426 TTAGACGCTTCGCTCCCAAC 60.389 55.000 0.00 0.00 0.00 3.77
607 608 0.535335 ATTAGACGCTTCGCTCCCAA 59.465 50.000 0.00 0.00 0.00 4.12
608 609 0.535335 AATTAGACGCTTCGCTCCCA 59.465 50.000 0.00 0.00 0.00 4.37
609 610 2.125685 GTAATTAGACGCTTCGCTCCC 58.874 52.381 0.00 0.00 0.00 4.30
610 611 2.789893 CAGTAATTAGACGCTTCGCTCC 59.210 50.000 0.00 0.00 0.00 4.70
611 612 3.436496 ACAGTAATTAGACGCTTCGCTC 58.564 45.455 0.00 0.00 0.00 5.03
612 613 3.505464 ACAGTAATTAGACGCTTCGCT 57.495 42.857 0.00 0.00 0.00 4.93
613 614 4.492085 GGAAACAGTAATTAGACGCTTCGC 60.492 45.833 0.00 0.00 0.00 4.70
614 615 4.624024 TGGAAACAGTAATTAGACGCTTCG 59.376 41.667 0.00 0.00 35.01 3.79
615 616 6.476243 TTGGAAACAGTAATTAGACGCTTC 57.524 37.500 0.00 0.00 44.54 3.86
616 617 6.870971 TTTGGAAACAGTAATTAGACGCTT 57.129 33.333 0.00 0.00 44.54 4.68
617 618 6.870971 TTTTGGAAACAGTAATTAGACGCT 57.129 33.333 0.00 0.00 44.54 5.07
649 650 2.995482 CGCGTTTCTTCGATCGGG 59.005 61.111 16.41 8.89 0.00 5.14
681 3649 3.309682 GCCGTGAGAATGATTTCGATTCA 59.690 43.478 1.53 1.53 36.93 2.57
716 3684 1.982226 TGAGGGAGACGGAATTCCAAA 59.018 47.619 24.09 0.00 35.09 3.28
719 3687 0.179070 GCTGAGGGAGACGGAATTCC 60.179 60.000 15.01 15.01 0.00 3.01
739 3707 7.654520 TCTTCTTCTTTTCCTCGATCGTTTTTA 59.345 33.333 15.94 0.00 0.00 1.52
767 3735 3.776340 CGCTACCTTCCTCTTCTCTTTC 58.224 50.000 0.00 0.00 0.00 2.62
783 3751 1.013755 CGTTACGTGCATGCGCTAC 60.014 57.895 27.32 19.94 39.64 3.58
792 3760 3.664798 CGATCTAGATCTCCGTTACGTGC 60.665 52.174 26.29 0.86 35.72 5.34
814 3782 1.135315 CCAGTTACCATGCATGCACAC 60.135 52.381 25.37 14.32 0.00 3.82
815 3783 1.175654 CCAGTTACCATGCATGCACA 58.824 50.000 25.37 5.73 0.00 4.57
912 3880 4.280019 AGGGCGCGGGTTTCCTTT 62.280 61.111 8.83 0.00 0.00 3.11
1062 4031 4.261114 CGTCGTATCCTCCTCTTTACTTCC 60.261 50.000 0.00 0.00 0.00 3.46
1365 4448 1.172180 TCTTCTTGTTGGCCTTGGCG 61.172 55.000 3.32 0.00 0.00 5.69
1430 4513 3.797546 GCAGCCTGCTGAAGTCGC 61.798 66.667 22.64 2.21 46.30 5.19
1472 4555 2.995881 GATGTAGGGTACGACGCCGC 62.996 65.000 0.00 0.00 39.95 6.53
1609 4698 1.983605 CAACTCGGCAACACGTACTAG 59.016 52.381 0.00 0.00 34.94 2.57
1643 4732 8.964476 AACCTTCAACCATTAGATACATGTAG 57.036 34.615 11.91 0.00 0.00 2.74
1644 4733 8.544622 TGAACCTTCAACCATTAGATACATGTA 58.455 33.333 8.27 8.27 33.55 2.29
1645 4734 7.402054 TGAACCTTCAACCATTAGATACATGT 58.598 34.615 2.69 2.69 33.55 3.21
1646 4735 7.864108 TGAACCTTCAACCATTAGATACATG 57.136 36.000 0.00 0.00 33.55 3.21
1647 4736 7.013655 GCATGAACCTTCAACCATTAGATACAT 59.986 37.037 0.00 0.00 41.13 2.29
1648 4737 6.318648 GCATGAACCTTCAACCATTAGATACA 59.681 38.462 0.00 0.00 41.13 2.29
1649 4738 6.318648 TGCATGAACCTTCAACCATTAGATAC 59.681 38.462 0.00 0.00 41.13 2.24
1652 4741 4.661222 TGCATGAACCTTCAACCATTAGA 58.339 39.130 0.00 0.00 41.13 2.10
1653 4742 5.345702 CATGCATGAACCTTCAACCATTAG 58.654 41.667 22.59 0.00 41.13 1.73
1655 4744 3.618019 GCATGCATGAACCTTCAACCATT 60.618 43.478 30.64 0.00 41.13 3.16
1656 4745 2.093869 GCATGCATGAACCTTCAACCAT 60.094 45.455 30.64 0.00 41.13 3.55
1657 4746 1.273048 GCATGCATGAACCTTCAACCA 59.727 47.619 30.64 0.00 41.13 3.67
1658 4747 1.547372 AGCATGCATGAACCTTCAACC 59.453 47.619 30.64 8.13 41.13 3.77
1659 4748 3.308438 AAGCATGCATGAACCTTCAAC 57.692 42.857 30.64 8.88 41.13 3.18
1660 4749 3.575256 AGAAAGCATGCATGAACCTTCAA 59.425 39.130 30.64 0.00 41.13 2.69
1661 4750 3.159472 AGAAAGCATGCATGAACCTTCA 58.841 40.909 30.64 0.00 42.14 3.02
1662 4751 3.442977 AGAGAAAGCATGCATGAACCTTC 59.557 43.478 30.64 21.95 0.00 3.46
1663 4752 3.428532 AGAGAAAGCATGCATGAACCTT 58.571 40.909 30.64 19.73 0.00 3.50
1664 4753 3.083122 AGAGAAAGCATGCATGAACCT 57.917 42.857 30.64 18.78 0.00 3.50
1733 4826 4.763793 CAGGATGAACAGAAACCATGAACT 59.236 41.667 0.00 0.00 39.69 3.01
1787 4880 4.028993 ACCACGGATCAACCAAACTATT 57.971 40.909 0.00 0.00 38.90 1.73
1830 4923 3.747099 AGATGAAAGGCGAAACGATTG 57.253 42.857 0.00 0.00 0.00 2.67
1839 4932 7.337184 TGGTAGTAGATAGATAGATGAAAGGCG 59.663 40.741 0.00 0.00 0.00 5.52
1869 4962 2.040813 TCTGCCCTCTCTCATGCTTTTT 59.959 45.455 0.00 0.00 0.00 1.94
1870 4963 1.632409 TCTGCCCTCTCTCATGCTTTT 59.368 47.619 0.00 0.00 0.00 2.27
1874 4967 0.035176 GGATCTGCCCTCTCTCATGC 59.965 60.000 0.00 0.00 0.00 4.06
1881 4974 1.213926 GGTGATTTGGATCTGCCCTCT 59.786 52.381 0.00 0.00 34.97 3.69
1882 4975 1.064463 TGGTGATTTGGATCTGCCCTC 60.064 52.381 0.00 0.00 34.97 4.30
1901 4994 8.162878 AGATTGTGTAATTAATGGCTGAGATG 57.837 34.615 0.00 0.00 0.00 2.90
1906 4999 7.132213 CCGTTAGATTGTGTAATTAATGGCTG 58.868 38.462 0.00 0.00 29.57 4.85
1909 5002 6.262273 AGGCCGTTAGATTGTGTAATTAATGG 59.738 38.462 0.00 0.00 34.02 3.16
1944 5037 4.863689 TGGTTAGCGATCGATTTCGTTAAA 59.136 37.500 21.57 0.00 43.27 1.52
1952 5045 3.560068 GGTGATTTGGTTAGCGATCGATT 59.440 43.478 21.57 8.62 0.00 3.34
1978 5071 1.027255 TGCGGAGAGAAGAGAGGACG 61.027 60.000 0.00 0.00 0.00 4.79
2003 5096 1.826487 GTGGGACGTGCAGGGTTTT 60.826 57.895 9.96 0.00 0.00 2.43
2004 5097 2.203294 GTGGGACGTGCAGGGTTT 60.203 61.111 9.96 0.00 0.00 3.27
2005 5098 2.676163 GAAGTGGGACGTGCAGGGTT 62.676 60.000 9.96 0.00 0.00 4.11
2006 5099 3.168528 AAGTGGGACGTGCAGGGT 61.169 61.111 9.96 0.00 0.00 4.34
2010 5103 0.249868 CTTCAGAAGTGGGACGTGCA 60.250 55.000 9.96 0.00 0.00 4.57
2016 5109 3.068881 CGGCCTTCAGAAGTGGGA 58.931 61.111 9.41 0.00 0.00 4.37
2018 5111 3.121030 CGCGGCCTTCAGAAGTGG 61.121 66.667 9.41 0.00 0.00 4.00
2026 5119 4.090057 GCAGTTGACGCGGCCTTC 62.090 66.667 10.82 0.00 0.00 3.46
2039 5132 3.314331 CAGTGGGGGTCGAGCAGT 61.314 66.667 17.59 0.00 0.00 4.40
2047 5140 3.717294 GATGTCGGCAGTGGGGGT 61.717 66.667 0.00 0.00 0.00 4.95
2124 5217 2.303175 CGGGAAAGAAGGAAACCACAA 58.697 47.619 0.00 0.00 0.00 3.33
2167 5260 3.953712 TCTAGTTCCAGATCAAACGCA 57.046 42.857 0.00 0.00 0.00 5.24
2168 5261 4.433615 TCATCTAGTTCCAGATCAAACGC 58.566 43.478 0.00 0.00 32.83 4.84
2173 5266 3.051803 ACCCCTCATCTAGTTCCAGATCA 60.052 47.826 0.00 0.00 32.83 2.92
2219 5312 0.984961 CCCTCTCTCTTCCATGGCCA 60.985 60.000 8.56 8.56 0.00 5.36
2222 5315 2.091389 TCTCTCCCTCTCTCTTCCATGG 60.091 54.545 4.97 4.97 0.00 3.66
2224 5317 3.914771 CTTCTCTCCCTCTCTCTTCCAT 58.085 50.000 0.00 0.00 0.00 3.41
2257 5350 1.608627 ACCCGTCTAGGTCCACCAC 60.609 63.158 0.00 0.00 33.81 4.16
2258 5351 1.608336 CACCCGTCTAGGTCCACCA 60.608 63.158 0.00 0.00 38.39 4.17
2493 5586 0.041833 TGGAGGAAGAGGAGGAGTGG 59.958 60.000 0.00 0.00 0.00 4.00
2500 5593 0.254178 GCAGCATTGGAGGAAGAGGA 59.746 55.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.