Multiple sequence alignment - TraesCS7B01G449300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G449300 chr7B 100.000 3512 0 0 1 3512 711490556 711487045 0.000000e+00 6486.0
1 TraesCS7B01G449300 chr7B 87.968 1737 152 32 927 2636 711475426 711477132 0.000000e+00 1997.0
2 TraesCS7B01G449300 chr7B 78.060 629 105 23 2894 3497 465172684 465172064 1.990000e-97 366.0
3 TraesCS7B01G449300 chr7B 86.364 264 23 7 8 267 711474975 711475229 3.450000e-70 276.0
4 TraesCS7B01G449300 chr7B 85.714 189 22 5 711 897 711475252 711475437 9.950000e-46 195.0
5 TraesCS7B01G449300 chr7B 100.000 29 0 0 311 339 22896175 22896203 2.000000e-03 54.7
6 TraesCS7B01G449300 chr7B 100.000 28 0 0 311 338 22775058 22775085 6.000000e-03 52.8
7 TraesCS7B01G449300 chr7D 88.330 2665 249 36 873 3511 617378359 617375731 0.000000e+00 3142.0
8 TraesCS7B01G449300 chr7D 92.689 1491 95 11 1041 2523 617197263 617198747 0.000000e+00 2137.0
9 TraesCS7B01G449300 chr7D 89.521 334 23 7 8 339 617379324 617379001 2.520000e-111 412.0
10 TraesCS7B01G449300 chr7D 81.489 497 70 17 3033 3508 423695189 423694694 4.250000e-104 388.0
11 TraesCS7B01G449300 chr7D 92.655 177 13 0 662 838 617378991 617378815 4.500000e-64 255.0
12 TraesCS7B01G449300 chr7D 93.233 133 9 0 741 873 617378811 617378679 2.770000e-46 196.0
13 TraesCS7B01G449300 chr7A 90.408 2012 167 17 675 2664 711172962 711170955 0.000000e+00 2623.0
14 TraesCS7B01G449300 chr7A 91.489 1504 114 11 1029 2522 710959345 710957846 0.000000e+00 2056.0
15 TraesCS7B01G449300 chr7A 87.697 317 26 8 8 322 711173270 711172965 1.200000e-94 357.0
16 TraesCS7B01G449300 chr7A 86.452 310 33 4 2657 2957 711167537 711167228 7.270000e-87 331.0
17 TraesCS7B01G449300 chr7A 80.473 338 54 8 3115 3442 42693788 42693453 7.530000e-62 248.0
18 TraesCS7B01G449300 chr7A 97.297 37 0 1 3407 3442 711167233 711167197 1.050000e-05 62.1
19 TraesCS7B01G449300 chrUn 87.916 1291 147 5 1213 2494 241849815 241848525 0.000000e+00 1511.0
20 TraesCS7B01G449300 chr4A 87.452 1291 153 5 1213 2494 599612138 599613428 0.000000e+00 1478.0
21 TraesCS7B01G449300 chr4A 91.111 315 25 3 345 658 125809084 125809396 1.170000e-114 424.0
22 TraesCS7B01G449300 chr4A 78.593 654 115 12 2876 3508 677353033 677353682 3.260000e-110 409.0
23 TraesCS7B01G449300 chr4D 83.191 1285 206 9 1210 2490 443206669 443207947 0.000000e+00 1168.0
24 TraesCS7B01G449300 chr4D 90.741 324 23 6 343 660 179930171 179929849 3.240000e-115 425.0
25 TraesCS7B01G449300 chr4D 76.000 425 88 9 3091 3503 336324045 336324467 1.280000e-49 207.0
26 TraesCS7B01G449300 chr4B 83.035 1285 208 8 1210 2490 552744605 552745883 0.000000e+00 1157.0
27 TraesCS7B01G449300 chr5D 81.424 646 95 19 2885 3508 246018928 246019570 4.050000e-139 505.0
28 TraesCS7B01G449300 chr5D 91.925 322 20 5 343 660 127069200 127068881 2.490000e-121 446.0
29 TraesCS7B01G449300 chr5D 90.432 324 25 5 343 662 445778456 445778135 4.190000e-114 422.0
30 TraesCS7B01G449300 chr5D 90.402 323 25 5 343 660 171359897 171360218 1.510000e-113 420.0
31 TraesCS7B01G449300 chr3D 81.534 639 93 19 2894 3510 48966345 48965710 1.460000e-138 503.0
32 TraesCS7B01G449300 chr3D 81.371 569 80 15 2884 3441 461022525 461021972 1.160000e-119 440.0
33 TraesCS7B01G449300 chr3D 79.859 427 58 15 3094 3508 569836378 569835968 1.600000e-73 287.0
34 TraesCS7B01G449300 chr3D 71.763 641 131 38 2898 3508 373518985 373518365 6.110000e-28 135.0
35 TraesCS7B01G449300 chr3B 91.195 318 23 4 345 658 223277132 223277448 9.010000e-116 427.0
36 TraesCS7B01G449300 chr3B 78.349 642 108 22 2888 3508 611429869 611429238 1.530000e-103 387.0
37 TraesCS7B01G449300 chr3B 100.000 28 0 0 312 339 536458573 536458546 6.000000e-03 52.8
38 TraesCS7B01G449300 chr2D 90.683 322 24 5 343 660 250552497 250552178 1.170000e-114 424.0
39 TraesCS7B01G449300 chr2D 90.712 323 23 6 343 660 256866034 256866354 1.170000e-114 424.0
40 TraesCS7B01G449300 chr2D 90.402 323 26 4 341 660 27500309 27499989 1.510000e-113 420.0
41 TraesCS7B01G449300 chr2D 81.230 309 42 9 3210 3508 598875011 598874709 5.860000e-58 235.0
42 TraesCS7B01G449300 chr2D 74.118 340 75 9 3027 3356 168244375 168244039 1.020000e-25 128.0
43 TraesCS7B01G449300 chr6D 78.362 647 99 25 2885 3508 95887662 95888290 7.110000e-102 381.0
44 TraesCS7B01G449300 chr6D 77.987 636 104 27 2885 3508 97240152 97240763 1.990000e-97 366.0
45 TraesCS7B01G449300 chr6D 86.301 146 10 8 3373 3508 97232025 97232170 2.180000e-32 150.0
46 TraesCS7B01G449300 chr6D 72.630 559 102 34 2975 3504 44255999 44255463 1.700000e-28 137.0
47 TraesCS7B01G449300 chr1A 78.534 573 103 16 2885 3442 188131170 188131737 3.330000e-95 359.0
48 TraesCS7B01G449300 chr1A 76.027 438 86 15 3085 3508 496007193 496007625 3.550000e-50 209.0
49 TraesCS7B01G449300 chr5A 77.435 616 92 25 2915 3506 663105061 663104469 1.220000e-84 324.0
50 TraesCS7B01G449300 chr6B 75.545 642 118 23 2884 3508 655878829 655879448 2.670000e-71 279.0
51 TraesCS7B01G449300 chr1B 93.548 124 7 1 686 809 667981925 667981803 2.150000e-42 183.0
52 TraesCS7B01G449300 chr1B 85.470 117 17 0 2894 3010 37803682 37803566 4.760000e-24 122.0
53 TraesCS7B01G449300 chr5B 90.909 44 4 0 672 715 113455412 113455455 3.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G449300 chr7B 711487045 711490556 3511 True 6486.000000 6486 100.00000 1 3512 1 chr7B.!!$R2 3511
1 TraesCS7B01G449300 chr7B 711474975 711477132 2157 False 822.666667 1997 86.68200 8 2636 3 chr7B.!!$F3 2628
2 TraesCS7B01G449300 chr7B 465172064 465172684 620 True 366.000000 366 78.06000 2894 3497 1 chr7B.!!$R1 603
3 TraesCS7B01G449300 chr7D 617197263 617198747 1484 False 2137.000000 2137 92.68900 1041 2523 1 chr7D.!!$F1 1482
4 TraesCS7B01G449300 chr7D 617375731 617379324 3593 True 1001.250000 3142 90.93475 8 3511 4 chr7D.!!$R2 3503
5 TraesCS7B01G449300 chr7A 710957846 710959345 1499 True 2056.000000 2056 91.48900 1029 2522 1 chr7A.!!$R2 1493
6 TraesCS7B01G449300 chr7A 711167197 711173270 6073 True 843.275000 2623 90.46350 8 3442 4 chr7A.!!$R3 3434
7 TraesCS7B01G449300 chrUn 241848525 241849815 1290 True 1511.000000 1511 87.91600 1213 2494 1 chrUn.!!$R1 1281
8 TraesCS7B01G449300 chr4A 599612138 599613428 1290 False 1478.000000 1478 87.45200 1213 2494 1 chr4A.!!$F2 1281
9 TraesCS7B01G449300 chr4A 677353033 677353682 649 False 409.000000 409 78.59300 2876 3508 1 chr4A.!!$F3 632
10 TraesCS7B01G449300 chr4D 443206669 443207947 1278 False 1168.000000 1168 83.19100 1210 2490 1 chr4D.!!$F2 1280
11 TraesCS7B01G449300 chr4B 552744605 552745883 1278 False 1157.000000 1157 83.03500 1210 2490 1 chr4B.!!$F1 1280
12 TraesCS7B01G449300 chr5D 246018928 246019570 642 False 505.000000 505 81.42400 2885 3508 1 chr5D.!!$F2 623
13 TraesCS7B01G449300 chr3D 48965710 48966345 635 True 503.000000 503 81.53400 2894 3510 1 chr3D.!!$R1 616
14 TraesCS7B01G449300 chr3D 461021972 461022525 553 True 440.000000 440 81.37100 2884 3441 1 chr3D.!!$R3 557
15 TraesCS7B01G449300 chr3B 611429238 611429869 631 True 387.000000 387 78.34900 2888 3508 1 chr3B.!!$R2 620
16 TraesCS7B01G449300 chr6D 95887662 95888290 628 False 381.000000 381 78.36200 2885 3508 1 chr6D.!!$F1 623
17 TraesCS7B01G449300 chr6D 97240152 97240763 611 False 366.000000 366 77.98700 2885 3508 1 chr6D.!!$F3 623
18 TraesCS7B01G449300 chr1A 188131170 188131737 567 False 359.000000 359 78.53400 2885 3442 1 chr1A.!!$F1 557
19 TraesCS7B01G449300 chr5A 663104469 663105061 592 True 324.000000 324 77.43500 2915 3506 1 chr5A.!!$R1 591
20 TraesCS7B01G449300 chr6B 655878829 655879448 619 False 279.000000 279 75.54500 2884 3508 1 chr6B.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 661 0.039764 GGAGCACTAAAAGGGGCCTT 59.96 55.0 0.84 0.0 37.98 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 2996 0.39382 GTTTACACCACCGTCTGGGA 59.606 55.0 1.71 0.0 45.78 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.099419 GTCCAATTGAAGAACCAACCTGTT 59.901 41.667 7.12 0.00 0.00 3.16
70 71 1.975680 ACTGGATGGTTCGTAGGTTGT 59.024 47.619 0.00 0.00 0.00 3.32
72 73 2.742053 CTGGATGGTTCGTAGGTTGTTG 59.258 50.000 0.00 0.00 0.00 3.33
73 74 2.105134 TGGATGGTTCGTAGGTTGTTGT 59.895 45.455 0.00 0.00 0.00 3.32
74 75 3.324268 TGGATGGTTCGTAGGTTGTTGTA 59.676 43.478 0.00 0.00 0.00 2.41
121 124 6.147164 ACTTAAGGTTTGACACATGTGTATCG 59.853 38.462 30.63 12.24 45.05 2.92
122 125 3.334691 AGGTTTGACACATGTGTATCGG 58.665 45.455 30.63 4.12 45.05 4.18
131 134 1.864711 CATGTGTATCGGGTAAAGGCG 59.135 52.381 0.00 0.00 0.00 5.52
144 147 4.267536 GGTAAAGGCGGGACTATTCTTTT 58.732 43.478 0.00 0.00 0.00 2.27
154 157 5.338137 CGGGACTATTCTTTTAGTGGAAGGT 60.338 44.000 0.00 0.00 32.59 3.50
204 207 6.313658 CCTATGATGACTTCGTCAATCACAAA 59.686 38.462 5.26 0.00 45.96 2.83
205 208 6.748333 ATGATGACTTCGTCAATCACAAAT 57.252 33.333 5.26 0.00 45.96 2.32
206 209 6.558771 TGATGACTTCGTCAATCACAAATT 57.441 33.333 0.36 0.00 45.96 1.82
207 210 6.969366 TGATGACTTCGTCAATCACAAATTT 58.031 32.000 0.36 0.00 45.96 1.82
213 216 9.180678 GACTTCGTCAATCACAAATTTACAATT 57.819 29.630 0.00 0.00 32.09 2.32
223 226 4.083164 ACAAATTTACAATTCCCGTCGACC 60.083 41.667 10.58 0.00 0.00 4.79
233 236 2.182030 CGTCGACCAAGCCTCTCC 59.818 66.667 10.58 0.00 0.00 3.71
268 271 1.009903 GTATGGTGTACGTGTGCGCA 61.010 55.000 5.66 5.66 42.83 6.09
306 309 3.586100 ATGTGTGTACATGTGAGCGTA 57.414 42.857 9.11 0.00 45.54 4.42
318 321 3.985008 TGTGAGCGTATGTGTTGTACTT 58.015 40.909 0.00 0.00 0.00 2.24
356 359 3.569873 GGCTTTAGGCTACCTGCAA 57.430 52.632 12.51 0.00 45.15 4.08
357 360 2.058593 GGCTTTAGGCTACCTGCAAT 57.941 50.000 12.51 0.00 45.15 3.56
358 361 1.678101 GGCTTTAGGCTACCTGCAATG 59.322 52.381 12.51 0.00 45.15 2.82
359 362 1.066152 GCTTTAGGCTACCTGCAATGC 59.934 52.381 0.00 0.00 45.15 3.56
360 363 2.368439 CTTTAGGCTACCTGCAATGCA 58.632 47.619 7.99 7.99 45.15 3.96
361 364 2.734755 TTAGGCTACCTGCAATGCAT 57.265 45.000 8.91 0.00 45.15 3.96
362 365 2.734755 TAGGCTACCTGCAATGCATT 57.265 45.000 8.91 5.99 45.15 3.56
363 366 1.108776 AGGCTACCTGCAATGCATTG 58.891 50.000 30.92 30.92 45.15 2.82
364 367 0.103572 GGCTACCTGCAATGCATTGG 59.896 55.000 34.23 23.24 45.15 3.16
365 368 0.819582 GCTACCTGCAATGCATTGGT 59.180 50.000 34.23 26.94 39.74 3.67
366 369 1.470285 GCTACCTGCAATGCATTGGTG 60.470 52.381 34.23 20.47 37.59 4.17
379 382 3.770263 CATTGGTGCTTACATGAGGTG 57.230 47.619 0.00 0.00 0.00 4.00
380 383 1.533625 TTGGTGCTTACATGAGGTGC 58.466 50.000 0.00 0.00 0.00 5.01
381 384 0.692476 TGGTGCTTACATGAGGTGCT 59.308 50.000 0.00 0.00 0.00 4.40
382 385 1.905894 TGGTGCTTACATGAGGTGCTA 59.094 47.619 0.00 0.00 0.00 3.49
383 386 2.304470 TGGTGCTTACATGAGGTGCTAA 59.696 45.455 0.00 0.00 0.00 3.09
384 387 2.939103 GGTGCTTACATGAGGTGCTAAG 59.061 50.000 0.00 0.00 0.00 2.18
385 388 2.352960 GTGCTTACATGAGGTGCTAAGC 59.647 50.000 13.71 13.71 41.97 3.09
386 389 2.027285 TGCTTACATGAGGTGCTAAGCA 60.027 45.455 17.49 17.49 44.97 3.91
401 404 6.567687 TGCTAAGCACATTAAACTTTAGCA 57.432 33.333 11.42 11.42 31.71 3.49
402 405 6.976088 TGCTAAGCACATTAAACTTTAGCAA 58.024 32.000 12.68 0.19 32.38 3.91
403 406 6.861055 TGCTAAGCACATTAAACTTTAGCAAC 59.139 34.615 12.68 0.00 32.38 4.17
404 407 7.084486 GCTAAGCACATTAAACTTTAGCAACT 58.916 34.615 8.65 0.00 0.00 3.16
405 408 8.234546 GCTAAGCACATTAAACTTTAGCAACTA 58.765 33.333 8.65 0.00 0.00 2.24
408 411 9.810545 AAGCACATTAAACTTTAGCAACTAAAA 57.189 25.926 1.82 0.00 35.82 1.52
409 412 9.244799 AGCACATTAAACTTTAGCAACTAAAAC 57.755 29.630 1.82 0.00 35.82 2.43
410 413 8.484799 GCACATTAAACTTTAGCAACTAAAACC 58.515 33.333 1.82 0.00 35.82 3.27
411 414 8.974408 CACATTAAACTTTAGCAACTAAAACCC 58.026 33.333 1.82 0.00 35.82 4.11
412 415 8.145767 ACATTAAACTTTAGCAACTAAAACCCC 58.854 33.333 1.82 0.00 35.82 4.95
413 416 7.901283 TTAAACTTTAGCAACTAAAACCCCT 57.099 32.000 1.82 0.00 35.82 4.79
414 417 8.993404 TTAAACTTTAGCAACTAAAACCCCTA 57.007 30.769 1.82 0.00 35.82 3.53
415 418 7.901283 AAACTTTAGCAACTAAAACCCCTAA 57.099 32.000 1.82 0.00 35.82 2.69
416 419 8.486942 AAACTTTAGCAACTAAAACCCCTAAT 57.513 30.769 1.82 0.00 35.82 1.73
417 420 7.462571 ACTTTAGCAACTAAAACCCCTAATG 57.537 36.000 1.82 0.00 35.82 1.90
418 421 5.907866 TTAGCAACTAAAACCCCTAATGC 57.092 39.130 0.00 0.00 0.00 3.56
419 422 3.773560 AGCAACTAAAACCCCTAATGCA 58.226 40.909 0.00 0.00 35.11 3.96
420 423 4.352893 AGCAACTAAAACCCCTAATGCAT 58.647 39.130 0.00 0.00 35.11 3.96
421 424 5.515106 AGCAACTAAAACCCCTAATGCATA 58.485 37.500 0.00 0.00 35.11 3.14
422 425 5.594317 AGCAACTAAAACCCCTAATGCATAG 59.406 40.000 0.00 0.00 35.11 2.23
423 426 5.592688 GCAACTAAAACCCCTAATGCATAGA 59.407 40.000 0.00 0.00 33.04 1.98
424 427 6.265422 GCAACTAAAACCCCTAATGCATAGAT 59.735 38.462 0.00 0.00 33.04 1.98
425 428 7.651808 CAACTAAAACCCCTAATGCATAGATG 58.348 38.462 0.00 0.00 33.04 2.90
441 444 3.923017 AGATGCTTAACTTGTTGGTGC 57.077 42.857 0.00 0.00 0.00 5.01
442 445 3.490348 AGATGCTTAACTTGTTGGTGCT 58.510 40.909 0.00 0.00 0.00 4.40
443 446 4.651778 AGATGCTTAACTTGTTGGTGCTA 58.348 39.130 0.00 0.00 0.00 3.49
444 447 5.070001 AGATGCTTAACTTGTTGGTGCTAA 58.930 37.500 0.00 0.00 0.00 3.09
445 448 4.829064 TGCTTAACTTGTTGGTGCTAAG 57.171 40.909 0.00 0.00 0.00 2.18
446 449 3.004315 TGCTTAACTTGTTGGTGCTAAGC 59.996 43.478 8.58 8.58 40.91 3.09
447 450 3.004315 GCTTAACTTGTTGGTGCTAAGCA 59.996 43.478 9.96 0.00 40.47 3.91
448 451 4.321230 GCTTAACTTGTTGGTGCTAAGCAT 60.321 41.667 9.96 0.00 41.91 3.79
449 452 3.923017 AACTTGTTGGTGCTAAGCATC 57.077 42.857 0.00 0.00 41.91 3.91
450 453 2.162681 ACTTGTTGGTGCTAAGCATCC 58.837 47.619 0.00 0.00 39.18 3.51
451 454 2.224867 ACTTGTTGGTGCTAAGCATCCT 60.225 45.455 0.00 0.00 39.18 3.24
452 455 2.584835 TGTTGGTGCTAAGCATCCTT 57.415 45.000 0.00 0.00 39.18 3.36
453 456 2.436417 TGTTGGTGCTAAGCATCCTTC 58.564 47.619 0.00 0.00 39.18 3.46
454 457 2.224744 TGTTGGTGCTAAGCATCCTTCA 60.225 45.455 0.00 0.00 39.18 3.02
455 458 3.019564 GTTGGTGCTAAGCATCCTTCAT 58.980 45.455 0.00 0.00 39.18 2.57
456 459 3.370840 TGGTGCTAAGCATCCTTCATT 57.629 42.857 0.00 0.00 39.18 2.57
457 460 3.700538 TGGTGCTAAGCATCCTTCATTT 58.299 40.909 0.00 0.00 39.18 2.32
458 461 4.854173 TGGTGCTAAGCATCCTTCATTTA 58.146 39.130 0.00 0.00 39.18 1.40
459 462 4.883585 TGGTGCTAAGCATCCTTCATTTAG 59.116 41.667 0.00 0.00 39.18 1.85
460 463 4.884164 GGTGCTAAGCATCCTTCATTTAGT 59.116 41.667 0.00 0.00 41.91 2.24
461 464 5.220931 GGTGCTAAGCATCCTTCATTTAGTG 60.221 44.000 0.00 0.00 41.91 2.74
462 465 5.586243 GTGCTAAGCATCCTTCATTTAGTGA 59.414 40.000 0.00 0.00 41.91 3.41
463 466 6.261826 GTGCTAAGCATCCTTCATTTAGTGAT 59.738 38.462 0.00 0.00 41.91 3.06
464 467 6.830324 TGCTAAGCATCCTTCATTTAGTGATT 59.170 34.615 0.00 0.00 32.68 2.57
465 468 7.340232 TGCTAAGCATCCTTCATTTAGTGATTT 59.660 33.333 0.00 0.00 32.68 2.17
466 469 8.193438 GCTAAGCATCCTTCATTTAGTGATTTT 58.807 33.333 0.00 0.00 36.54 1.82
467 470 9.512435 CTAAGCATCCTTCATTTAGTGATTTTG 57.488 33.333 0.00 0.00 36.54 2.44
468 471 6.335777 AGCATCCTTCATTTAGTGATTTTGC 58.664 36.000 0.00 0.00 36.54 3.68
469 472 6.071221 AGCATCCTTCATTTAGTGATTTTGCA 60.071 34.615 0.00 0.00 36.54 4.08
470 473 6.591062 GCATCCTTCATTTAGTGATTTTGCAA 59.409 34.615 0.00 0.00 36.54 4.08
471 474 7.412237 GCATCCTTCATTTAGTGATTTTGCAAC 60.412 37.037 0.00 0.00 36.54 4.17
472 475 7.048629 TCCTTCATTTAGTGATTTTGCAACA 57.951 32.000 0.00 0.00 36.54 3.33
473 476 7.495901 TCCTTCATTTAGTGATTTTGCAACAA 58.504 30.769 0.00 0.00 36.54 2.83
474 477 7.984050 TCCTTCATTTAGTGATTTTGCAACAAA 59.016 29.630 0.00 0.00 36.54 2.83
475 478 8.277713 CCTTCATTTAGTGATTTTGCAACAAAG 58.722 33.333 0.00 0.00 36.54 2.77
476 479 8.715191 TTCATTTAGTGATTTTGCAACAAAGT 57.285 26.923 0.00 0.00 36.54 2.66
477 480 8.715191 TCATTTAGTGATTTTGCAACAAAGTT 57.285 26.923 0.00 0.00 0.00 2.66
478 481 8.816144 TCATTTAGTGATTTTGCAACAAAGTTC 58.184 29.630 0.00 0.00 0.00 3.01
479 482 8.819974 CATTTAGTGATTTTGCAACAAAGTTCT 58.180 29.630 0.00 0.00 0.00 3.01
480 483 8.770438 TTTAGTGATTTTGCAACAAAGTTCTT 57.230 26.923 0.00 0.00 0.00 2.52
481 484 6.892310 AGTGATTTTGCAACAAAGTTCTTC 57.108 33.333 0.00 0.00 0.00 2.87
482 485 6.397272 AGTGATTTTGCAACAAAGTTCTTCA 58.603 32.000 0.00 0.00 0.00 3.02
483 486 7.043565 AGTGATTTTGCAACAAAGTTCTTCAT 58.956 30.769 0.00 0.00 0.00 2.57
484 487 7.010738 AGTGATTTTGCAACAAAGTTCTTCATG 59.989 33.333 0.00 0.00 0.00 3.07
485 488 5.467902 TTTTGCAACAAAGTTCTTCATGC 57.532 34.783 0.00 8.92 0.00 4.06
486 489 3.797451 TGCAACAAAGTTCTTCATGCA 57.203 38.095 12.39 12.39 39.73 3.96
487 490 4.325028 TGCAACAAAGTTCTTCATGCAT 57.675 36.364 0.00 0.00 37.40 3.96
488 491 4.300803 TGCAACAAAGTTCTTCATGCATC 58.699 39.130 0.00 0.00 37.40 3.91
489 492 3.362831 GCAACAAAGTTCTTCATGCATCG 59.637 43.478 0.00 0.00 32.80 3.84
490 493 3.837213 ACAAAGTTCTTCATGCATCGG 57.163 42.857 0.00 0.00 0.00 4.18
491 494 3.149196 ACAAAGTTCTTCATGCATCGGT 58.851 40.909 0.00 0.00 0.00 4.69
492 495 3.058016 ACAAAGTTCTTCATGCATCGGTG 60.058 43.478 0.00 0.00 0.00 4.94
493 496 1.742761 AGTTCTTCATGCATCGGTGG 58.257 50.000 0.00 0.00 0.00 4.61
494 497 0.734889 GTTCTTCATGCATCGGTGGG 59.265 55.000 0.00 0.00 0.00 4.61
495 498 1.031571 TTCTTCATGCATCGGTGGGC 61.032 55.000 0.00 0.00 0.00 5.36
496 499 1.452651 CTTCATGCATCGGTGGGCT 60.453 57.895 0.00 0.00 0.00 5.19
497 500 1.001020 TTCATGCATCGGTGGGCTT 60.001 52.632 0.00 0.00 0.00 4.35
498 501 1.031571 TTCATGCATCGGTGGGCTTC 61.032 55.000 0.00 0.00 0.00 3.86
499 502 1.452651 CATGCATCGGTGGGCTTCT 60.453 57.895 0.00 0.00 0.00 2.85
500 503 1.033746 CATGCATCGGTGGGCTTCTT 61.034 55.000 0.00 0.00 0.00 2.52
501 504 0.749454 ATGCATCGGTGGGCTTCTTC 60.749 55.000 0.00 0.00 0.00 2.87
502 505 2.115291 GCATCGGTGGGCTTCTTCC 61.115 63.158 0.00 0.00 0.00 3.46
503 506 1.299648 CATCGGTGGGCTTCTTCCA 59.700 57.895 0.00 0.00 0.00 3.53
504 507 0.107017 CATCGGTGGGCTTCTTCCAT 60.107 55.000 0.00 0.00 36.58 3.41
505 508 0.625849 ATCGGTGGGCTTCTTCCATT 59.374 50.000 0.00 0.00 36.58 3.16
506 509 0.404040 TCGGTGGGCTTCTTCCATTT 59.596 50.000 0.00 0.00 36.58 2.32
507 510 1.631388 TCGGTGGGCTTCTTCCATTTA 59.369 47.619 0.00 0.00 36.58 1.40
508 511 2.040545 TCGGTGGGCTTCTTCCATTTAA 59.959 45.455 0.00 0.00 36.58 1.52
509 512 2.423538 CGGTGGGCTTCTTCCATTTAAG 59.576 50.000 0.00 0.00 36.58 1.85
510 513 3.431415 GGTGGGCTTCTTCCATTTAAGT 58.569 45.455 0.00 0.00 36.58 2.24
511 514 3.193479 GGTGGGCTTCTTCCATTTAAGTG 59.807 47.826 0.00 0.00 36.58 3.16
512 515 3.826729 GTGGGCTTCTTCCATTTAAGTGT 59.173 43.478 0.00 0.00 36.58 3.55
513 516 4.280929 GTGGGCTTCTTCCATTTAAGTGTT 59.719 41.667 0.00 0.00 36.58 3.32
514 517 4.898861 TGGGCTTCTTCCATTTAAGTGTTT 59.101 37.500 0.00 0.00 0.00 2.83
515 518 5.365314 TGGGCTTCTTCCATTTAAGTGTTTT 59.635 36.000 0.00 0.00 0.00 2.43
516 519 5.696270 GGGCTTCTTCCATTTAAGTGTTTTG 59.304 40.000 0.00 0.00 0.00 2.44
517 520 5.177511 GGCTTCTTCCATTTAAGTGTTTTGC 59.822 40.000 0.00 0.00 0.00 3.68
518 521 5.177511 GCTTCTTCCATTTAAGTGTTTTGCC 59.822 40.000 0.00 0.00 0.00 4.52
519 522 4.865776 TCTTCCATTTAAGTGTTTTGCCG 58.134 39.130 0.00 0.00 0.00 5.69
520 523 4.580995 TCTTCCATTTAAGTGTTTTGCCGA 59.419 37.500 0.00 0.00 0.00 5.54
521 524 4.497473 TCCATTTAAGTGTTTTGCCGAG 57.503 40.909 0.00 0.00 0.00 4.63
522 525 3.254657 TCCATTTAAGTGTTTTGCCGAGG 59.745 43.478 0.00 0.00 0.00 4.63
523 526 3.005367 CCATTTAAGTGTTTTGCCGAGGT 59.995 43.478 0.00 0.00 0.00 3.85
524 527 4.500716 CCATTTAAGTGTTTTGCCGAGGTT 60.501 41.667 0.00 0.00 0.00 3.50
525 528 3.974871 TTAAGTGTTTTGCCGAGGTTC 57.025 42.857 0.00 0.00 0.00 3.62
526 529 2.052782 AAGTGTTTTGCCGAGGTTCT 57.947 45.000 0.00 0.00 0.00 3.01
527 530 1.594331 AGTGTTTTGCCGAGGTTCTC 58.406 50.000 0.00 0.00 0.00 2.87
536 539 3.567473 GAGGTTCTCGTGCTTGGC 58.433 61.111 0.00 0.00 0.00 4.52
537 540 1.301716 GAGGTTCTCGTGCTTGGCA 60.302 57.895 0.00 0.00 35.60 4.92
538 541 0.674895 GAGGTTCTCGTGCTTGGCAT 60.675 55.000 0.00 0.00 41.91 4.40
539 542 0.250901 AGGTTCTCGTGCTTGGCATT 60.251 50.000 0.00 0.00 41.91 3.56
540 543 0.109597 GGTTCTCGTGCTTGGCATTG 60.110 55.000 0.00 0.00 41.91 2.82
541 544 0.593128 GTTCTCGTGCTTGGCATTGT 59.407 50.000 0.00 0.00 41.91 2.71
542 545 1.001378 GTTCTCGTGCTTGGCATTGTT 60.001 47.619 0.00 0.00 41.91 2.83
543 546 1.317613 TCTCGTGCTTGGCATTGTTT 58.682 45.000 0.00 0.00 41.91 2.83
544 547 1.266718 TCTCGTGCTTGGCATTGTTTC 59.733 47.619 0.00 0.00 41.91 2.78
545 548 1.267806 CTCGTGCTTGGCATTGTTTCT 59.732 47.619 0.00 0.00 41.91 2.52
546 549 1.680735 TCGTGCTTGGCATTGTTTCTT 59.319 42.857 0.00 0.00 41.91 2.52
547 550 2.053627 CGTGCTTGGCATTGTTTCTTC 58.946 47.619 0.00 0.00 41.91 2.87
548 551 2.407090 GTGCTTGGCATTGTTTCTTCC 58.593 47.619 0.00 0.00 41.91 3.46
549 552 2.036346 GTGCTTGGCATTGTTTCTTCCT 59.964 45.455 0.00 0.00 41.91 3.36
550 553 2.036217 TGCTTGGCATTGTTTCTTCCTG 59.964 45.455 0.00 0.00 31.71 3.86
551 554 2.611224 GCTTGGCATTGTTTCTTCCTGG 60.611 50.000 0.00 0.00 0.00 4.45
552 555 1.631405 TGGCATTGTTTCTTCCTGGG 58.369 50.000 0.00 0.00 0.00 4.45
553 556 0.897621 GGCATTGTTTCTTCCTGGGG 59.102 55.000 0.00 0.00 0.00 4.96
554 557 1.632589 GCATTGTTTCTTCCTGGGGT 58.367 50.000 0.00 0.00 0.00 4.95
555 558 1.970640 GCATTGTTTCTTCCTGGGGTT 59.029 47.619 0.00 0.00 0.00 4.11
556 559 3.161866 GCATTGTTTCTTCCTGGGGTTA 58.838 45.455 0.00 0.00 0.00 2.85
557 560 3.056821 GCATTGTTTCTTCCTGGGGTTAC 60.057 47.826 0.00 0.00 0.00 2.50
558 561 2.963599 TGTTTCTTCCTGGGGTTACC 57.036 50.000 0.00 0.00 40.81 2.85
568 571 1.595311 TGGGGTTACCATGCTCATCT 58.405 50.000 2.98 0.00 46.80 2.90
569 572 1.490490 TGGGGTTACCATGCTCATCTC 59.510 52.381 2.98 0.00 46.80 2.75
570 573 1.771255 GGGGTTACCATGCTCATCTCT 59.229 52.381 2.98 0.00 39.85 3.10
571 574 2.224402 GGGGTTACCATGCTCATCTCTC 60.224 54.545 2.98 0.00 39.85 3.20
572 575 2.703007 GGGTTACCATGCTCATCTCTCT 59.297 50.000 2.98 0.00 36.50 3.10
573 576 3.244044 GGGTTACCATGCTCATCTCTCTC 60.244 52.174 2.98 0.00 36.50 3.20
574 577 3.244044 GGTTACCATGCTCATCTCTCTCC 60.244 52.174 0.00 0.00 0.00 3.71
575 578 2.475339 ACCATGCTCATCTCTCTCCT 57.525 50.000 0.00 0.00 0.00 3.69
576 579 2.318908 ACCATGCTCATCTCTCTCCTC 58.681 52.381 0.00 0.00 0.00 3.71
577 580 2.091166 ACCATGCTCATCTCTCTCCTCT 60.091 50.000 0.00 0.00 0.00 3.69
578 581 2.967201 CCATGCTCATCTCTCTCCTCTT 59.033 50.000 0.00 0.00 0.00 2.85
579 582 4.151121 CCATGCTCATCTCTCTCCTCTTA 58.849 47.826 0.00 0.00 0.00 2.10
580 583 4.588106 CCATGCTCATCTCTCTCCTCTTAA 59.412 45.833 0.00 0.00 0.00 1.85
581 584 5.246656 CCATGCTCATCTCTCTCCTCTTAAT 59.753 44.000 0.00 0.00 0.00 1.40
582 585 6.239657 CCATGCTCATCTCTCTCCTCTTAATT 60.240 42.308 0.00 0.00 0.00 1.40
583 586 7.039152 CCATGCTCATCTCTCTCCTCTTAATTA 60.039 40.741 0.00 0.00 0.00 1.40
584 587 7.283625 TGCTCATCTCTCTCCTCTTAATTAC 57.716 40.000 0.00 0.00 0.00 1.89
585 588 6.266558 TGCTCATCTCTCTCCTCTTAATTACC 59.733 42.308 0.00 0.00 0.00 2.85
586 589 6.493458 GCTCATCTCTCTCCTCTTAATTACCT 59.507 42.308 0.00 0.00 0.00 3.08
587 590 7.015195 GCTCATCTCTCTCCTCTTAATTACCTT 59.985 40.741 0.00 0.00 0.00 3.50
588 591 8.243961 TCATCTCTCTCCTCTTAATTACCTTG 57.756 38.462 0.00 0.00 0.00 3.61
589 592 7.841729 TCATCTCTCTCCTCTTAATTACCTTGT 59.158 37.037 0.00 0.00 0.00 3.16
590 593 7.648039 TCTCTCTCCTCTTAATTACCTTGTC 57.352 40.000 0.00 0.00 0.00 3.18
591 594 7.182760 TCTCTCTCCTCTTAATTACCTTGTCA 58.817 38.462 0.00 0.00 0.00 3.58
592 595 7.122948 TCTCTCTCCTCTTAATTACCTTGTCAC 59.877 40.741 0.00 0.00 0.00 3.67
593 596 5.962433 TCTCCTCTTAATTACCTTGTCACG 58.038 41.667 0.00 0.00 0.00 4.35
594 597 5.479375 TCTCCTCTTAATTACCTTGTCACGT 59.521 40.000 0.00 0.00 0.00 4.49
595 598 5.717119 TCCTCTTAATTACCTTGTCACGTC 58.283 41.667 0.00 0.00 0.00 4.34
596 599 5.244402 TCCTCTTAATTACCTTGTCACGTCA 59.756 40.000 0.00 0.00 0.00 4.35
597 600 5.577164 CCTCTTAATTACCTTGTCACGTCAG 59.423 44.000 0.00 0.00 0.00 3.51
598 601 6.335471 TCTTAATTACCTTGTCACGTCAGA 57.665 37.500 0.00 0.00 0.00 3.27
599 602 6.931838 TCTTAATTACCTTGTCACGTCAGAT 58.068 36.000 0.00 0.00 0.00 2.90
600 603 7.383687 TCTTAATTACCTTGTCACGTCAGATT 58.616 34.615 0.00 0.00 0.00 2.40
601 604 7.876068 TCTTAATTACCTTGTCACGTCAGATTT 59.124 33.333 0.00 0.00 0.00 2.17
602 605 6.877611 AATTACCTTGTCACGTCAGATTTT 57.122 33.333 0.00 0.00 0.00 1.82
603 606 6.877611 ATTACCTTGTCACGTCAGATTTTT 57.122 33.333 0.00 0.00 0.00 1.94
620 623 2.584835 TTTTGCCTACATGACAGCCT 57.415 45.000 0.00 0.00 0.00 4.58
621 624 2.584835 TTTGCCTACATGACAGCCTT 57.415 45.000 0.00 0.00 0.00 4.35
622 625 2.584835 TTGCCTACATGACAGCCTTT 57.415 45.000 0.00 0.00 0.00 3.11
623 626 3.712016 TTGCCTACATGACAGCCTTTA 57.288 42.857 0.00 0.00 0.00 1.85
624 627 3.266510 TGCCTACATGACAGCCTTTAG 57.733 47.619 0.00 0.00 0.00 1.85
625 628 1.943340 GCCTACATGACAGCCTTTAGC 59.057 52.381 0.00 0.00 44.25 3.09
645 648 3.233355 CCTGTACAAGGTGGAGCAC 57.767 57.895 0.00 0.00 41.74 4.40
646 649 0.687354 CCTGTACAAGGTGGAGCACT 59.313 55.000 0.00 0.00 41.74 4.40
647 650 1.899814 CCTGTACAAGGTGGAGCACTA 59.100 52.381 0.00 0.00 41.74 2.74
648 651 2.301870 CCTGTACAAGGTGGAGCACTAA 59.698 50.000 0.00 0.00 41.74 2.24
649 652 3.244422 CCTGTACAAGGTGGAGCACTAAA 60.244 47.826 0.00 0.00 41.74 1.85
650 653 4.385825 CTGTACAAGGTGGAGCACTAAAA 58.614 43.478 0.00 0.00 34.40 1.52
651 654 4.385825 TGTACAAGGTGGAGCACTAAAAG 58.614 43.478 0.00 0.00 34.40 2.27
652 655 2.863809 ACAAGGTGGAGCACTAAAAGG 58.136 47.619 0.00 0.00 34.40 3.11
653 656 2.162681 CAAGGTGGAGCACTAAAAGGG 58.837 52.381 0.00 0.00 34.40 3.95
654 657 0.698818 AGGTGGAGCACTAAAAGGGG 59.301 55.000 0.00 0.00 34.40 4.79
655 658 0.965866 GGTGGAGCACTAAAAGGGGC 60.966 60.000 0.00 0.00 34.40 5.80
656 659 0.965866 GTGGAGCACTAAAAGGGGCC 60.966 60.000 0.00 0.00 0.00 5.80
657 660 1.140134 TGGAGCACTAAAAGGGGCCT 61.140 55.000 0.84 0.00 0.00 5.19
658 661 0.039764 GGAGCACTAAAAGGGGCCTT 59.960 55.000 0.84 0.00 37.98 4.35
659 662 1.283905 GGAGCACTAAAAGGGGCCTTA 59.716 52.381 0.84 0.00 34.84 2.69
660 663 2.291346 GGAGCACTAAAAGGGGCCTTAA 60.291 50.000 0.84 0.00 34.84 1.85
673 676 6.841781 AGGGGCCTTAAATCACTAGAATAA 57.158 37.500 0.84 0.00 0.00 1.40
755 759 1.978782 GTCCAAAAGAGCGCAAAATCG 59.021 47.619 11.47 0.00 0.00 3.34
767 773 2.735823 GCAAAATCGATCATTGCCTCC 58.264 47.619 26.47 9.29 42.70 4.30
772 778 1.651987 TCGATCATTGCCTCCGTTTC 58.348 50.000 0.00 0.00 0.00 2.78
818 824 0.905357 AAGATGTAGGCTGCCGAGTT 59.095 50.000 13.96 0.00 0.00 3.01
838 945 2.434884 AACAGCATCGCCACGAGG 60.435 61.111 0.00 0.00 39.91 4.63
839 946 2.942796 AACAGCATCGCCACGAGGA 61.943 57.895 1.86 0.00 40.15 3.71
884 1311 2.017049 GCTTGCGTTAATCACCCATCT 58.983 47.619 0.00 0.00 0.00 2.90
887 1314 4.083802 GCTTGCGTTAATCACCCATCTATC 60.084 45.833 0.00 0.00 0.00 2.08
893 1320 0.322975 ATCACCCATCTATCCGCTGC 59.677 55.000 0.00 0.00 0.00 5.25
942 1369 2.202566 GCCTACCGCTGACTACAAATC 58.797 52.381 0.00 0.00 0.00 2.17
967 1394 4.671377 TGCTTTGTTTGCACTAAAGACTG 58.329 39.130 16.46 0.00 35.31 3.51
973 1406 9.944663 CTTTGTTTGCACTAAAGACTGTATAAA 57.055 29.630 9.71 0.00 34.23 1.40
974 1407 9.944663 TTTGTTTGCACTAAAGACTGTATAAAG 57.055 29.630 0.00 0.00 0.00 1.85
976 1409 7.934665 TGTTTGCACTAAAGACTGTATAAAGGA 59.065 33.333 0.00 0.00 0.00 3.36
993 1439 9.836076 GTATAAAGGAACCAAATTAAGACACAC 57.164 33.333 0.00 0.00 0.00 3.82
994 1440 6.783708 AAAGGAACCAAATTAAGACACACA 57.216 33.333 0.00 0.00 0.00 3.72
995 1441 5.767816 AGGAACCAAATTAAGACACACAC 57.232 39.130 0.00 0.00 0.00 3.82
996 1442 5.197451 AGGAACCAAATTAAGACACACACA 58.803 37.500 0.00 0.00 0.00 3.72
1136 1586 2.104111 TGATCGTGGACAACTTCCTTGT 59.896 45.455 0.00 0.00 46.44 3.16
1147 1597 1.270358 ACTTCCTTGTCGCTTCCTGTC 60.270 52.381 0.00 0.00 0.00 3.51
1194 1644 2.430546 CGGAGCTCATCAGGTACATC 57.569 55.000 17.19 0.00 29.03 3.06
1195 1645 1.683385 CGGAGCTCATCAGGTACATCA 59.317 52.381 17.19 0.00 29.03 3.07
1464 1923 1.099295 TCATCCCGACGCACGAGTAT 61.099 55.000 0.00 0.00 45.77 2.12
1605 2064 3.329889 TTCTGCCCCACGCCATCT 61.330 61.111 0.00 0.00 36.24 2.90
1704 2163 4.554036 GGGCTCATCTCCGTGGGC 62.554 72.222 0.00 0.00 44.95 5.36
1789 2248 2.300723 ACCATCACGCCAAACTACTACA 59.699 45.455 0.00 0.00 0.00 2.74
1839 2298 4.595538 TGCCTGTTTCGCGTCGGT 62.596 61.111 5.77 0.00 0.00 4.69
1875 2334 3.751246 TCGACGTTCCCCGCGAAT 61.751 61.111 8.23 0.00 40.34 3.34
1876 2335 2.102749 CGACGTTCCCCGCGAATA 59.897 61.111 8.23 0.00 41.42 1.75
1923 2385 2.282180 ACCTTCACCGGCGCAAAT 60.282 55.556 10.83 0.00 0.00 2.32
1937 2399 1.535028 CGCAAATGACAGTGCTTACCA 59.465 47.619 11.05 0.00 38.66 3.25
2079 2541 0.248843 CTTTCTCCGAGCAGCTCCTT 59.751 55.000 17.16 0.00 0.00 3.36
2218 2683 1.899617 GAGCTGCAGAAGAGCCTCT 59.100 57.895 20.43 1.19 37.12 3.69
2269 2734 3.529341 ATGACGCTGCACCGGTTCA 62.529 57.895 2.97 5.20 0.00 3.18
2458 2923 2.436646 CCACGTCCATCCACAGGC 60.437 66.667 0.00 0.00 0.00 4.85
2516 2996 7.954666 AGCTTACACAACATAATAAACCCAT 57.045 32.000 0.00 0.00 0.00 4.00
2530 3010 2.268920 CCATCCCAGACGGTGGTG 59.731 66.667 5.44 0.00 46.37 4.17
2567 3047 1.087771 CCCCATACGGTCGTTTCTGC 61.088 60.000 0.16 0.00 0.00 4.26
2576 3056 1.202245 GGTCGTTTCTGCTTTGCAACA 60.202 47.619 0.00 0.00 38.41 3.33
2584 3064 6.454848 CGTTTCTGCTTTGCAACAATTGTAAA 60.455 34.615 12.39 8.09 41.79 2.01
2613 3094 1.808343 TCTGTGTGCTCACGTACGTAT 59.192 47.619 22.34 0.00 46.49 3.06
2640 3121 7.591006 TGTAACCGAATGTCTCTTTTATCAC 57.409 36.000 0.00 0.00 0.00 3.06
2646 3127 6.591834 CCGAATGTCTCTTTTATCACTCACTT 59.408 38.462 0.00 0.00 0.00 3.16
2664 3145 2.011947 CTTGCGATGTGTGTGATGGAT 58.988 47.619 0.00 0.00 0.00 3.41
2712 6620 9.265862 TGACCCAAATAAGAAAATAATCCATGT 57.734 29.630 0.00 0.00 0.00 3.21
2743 6651 1.745087 AGGTTCATTTAGGTGCATGCG 59.255 47.619 14.09 0.00 0.00 4.73
2747 6655 3.763097 TCATTTAGGTGCATGCGAAAG 57.237 42.857 14.09 5.56 0.00 2.62
2814 6722 7.816411 AGACCCATTTATAAAGGTTGCTCTAT 58.184 34.615 9.77 0.00 31.10 1.98
2817 6725 7.502561 ACCCATTTATAAAGGTTGCTCTATCAC 59.497 37.037 8.88 0.00 0.00 3.06
2847 6762 5.832539 AGGAAGTTTGAGAAGAGGAATGA 57.167 39.130 0.00 0.00 0.00 2.57
2856 6771 6.796785 TGAGAAGAGGAATGATACACATGA 57.203 37.500 0.00 0.00 39.39 3.07
2912 6827 2.713927 CTTGTTTTTGCCGGCCAGGG 62.714 60.000 26.77 7.09 41.48 4.45
2951 6866 5.302360 TGGATTAATTAACGAGCCGCTAAT 58.698 37.500 0.00 0.00 30.92 1.73
2973 6888 0.546122 AAGTGCCACTGTCCAAGACA 59.454 50.000 0.00 0.00 40.50 3.41
3059 6975 5.186215 GGCCTATATAAGAAGACTCTGGTCC 59.814 48.000 0.00 0.00 43.05 4.46
3081 6997 2.367567 GTGGAGTGAACCCTAACTCACA 59.632 50.000 5.13 0.00 43.81 3.58
3083 7008 2.609737 GGAGTGAACCCTAACTCACACG 60.610 54.545 5.13 0.00 43.81 4.49
3102 7027 1.485066 CGCTCCCACATAACCCTAGTT 59.515 52.381 0.00 0.00 40.15 2.24
3108 7033 5.282129 TCCCACATAACCCTAGTTGTCATA 58.718 41.667 0.00 0.00 36.68 2.15
3113 7038 9.436957 CCACATAACCCTAGTTGTCATATATTC 57.563 37.037 0.00 0.00 36.68 1.75
3131 7056 4.543590 ATTCTTCCTCTCATTGTGTCGT 57.456 40.909 0.00 0.00 0.00 4.34
3156 7081 2.335369 GATCCCATCCCGACGACG 59.665 66.667 0.00 0.00 39.43 5.12
3176 7102 0.179124 GCGTGCAGGTTGGTCAAAAA 60.179 50.000 8.40 0.00 0.00 1.94
3194 7120 3.515602 AAAAGCAGGTGTCTCCAGAAT 57.484 42.857 0.00 0.00 39.02 2.40
3228 7154 2.046892 CTGCCTGGGAGAACGGTG 60.047 66.667 10.00 0.00 0.00 4.94
3276 7206 1.499438 AGACTACTCCCGATCCATCCA 59.501 52.381 0.00 0.00 0.00 3.41
3294 7224 2.865147 AAGTCCCCGTCCTCCTCCA 61.865 63.158 0.00 0.00 0.00 3.86
3329 7259 2.364056 GCATCAACCCCATGGCCA 60.364 61.111 8.56 8.56 33.59 5.36
3330 7260 2.428925 GCATCAACCCCATGGCCAG 61.429 63.158 13.05 3.10 33.59 4.85
3447 7390 1.488527 CCTATTTGCTCGTAGCCGTC 58.511 55.000 4.73 0.00 41.51 4.79
3455 7398 1.478137 CTCGTAGCCGTCTATGTTGC 58.522 55.000 0.00 0.00 34.26 4.17
3479 7422 7.126398 GCGTTCATAGATGTTTTGGTTCTATC 58.874 38.462 0.00 0.00 31.84 2.08
3511 7454 4.274214 GTGCTCACATGCTTAGATATTGCA 59.726 41.667 0.00 0.00 41.13 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.167485 ACAACCTACGAACCATCCAGTA 58.833 45.455 0.00 0.00 0.00 2.74
70 71 0.912487 CCTGGTAGGCTGGGGTACAA 60.912 60.000 0.00 0.00 0.00 2.41
72 73 2.070650 CCCTGGTAGGCTGGGGTAC 61.071 68.421 0.00 0.00 37.37 3.34
73 74 1.609408 ATCCCTGGTAGGCTGGGGTA 61.609 60.000 7.72 1.19 41.22 3.69
74 75 2.973553 ATCCCTGGTAGGCTGGGGT 61.974 63.158 7.72 0.00 41.22 4.95
121 124 1.767088 AGAATAGTCCCGCCTTTACCC 59.233 52.381 0.00 0.00 0.00 3.69
122 125 3.555527 AAGAATAGTCCCGCCTTTACC 57.444 47.619 0.00 0.00 0.00 2.85
131 134 5.880887 CACCTTCCACTAAAAGAATAGTCCC 59.119 44.000 0.00 0.00 33.90 4.46
144 147 3.184382 TGAGACCATCACCTTCCACTA 57.816 47.619 0.00 0.00 31.12 2.74
154 157 1.756538 TCGCTAGCAATGAGACCATCA 59.243 47.619 16.45 0.00 43.70 3.07
204 207 3.337694 TGGTCGACGGGAATTGTAAAT 57.662 42.857 9.92 0.00 0.00 1.40
205 208 2.835580 TGGTCGACGGGAATTGTAAA 57.164 45.000 9.92 0.00 0.00 2.01
206 209 2.690786 CTTGGTCGACGGGAATTGTAA 58.309 47.619 9.92 0.00 0.00 2.41
207 210 1.673626 GCTTGGTCGACGGGAATTGTA 60.674 52.381 9.92 0.00 0.00 2.41
213 216 3.379445 GAGGCTTGGTCGACGGGA 61.379 66.667 9.92 0.00 0.00 5.14
233 236 3.833070 ACCATACCCTTATAAGCTCCTCG 59.167 47.826 6.99 0.00 0.00 4.63
339 342 1.066152 GCATTGCAGGTAGCCTAAAGC 59.934 52.381 3.15 0.00 44.83 3.51
340 343 2.368439 TGCATTGCAGGTAGCCTAAAG 58.632 47.619 7.38 0.00 44.83 1.85
341 344 2.505650 TGCATTGCAGGTAGCCTAAA 57.494 45.000 7.38 0.00 44.83 1.85
342 345 2.689471 CAATGCATTGCAGGTAGCCTAA 59.311 45.455 25.50 0.00 43.65 2.69
344 347 1.108776 CAATGCATTGCAGGTAGCCT 58.891 50.000 25.50 0.00 43.65 4.58
345 348 0.103572 CCAATGCATTGCAGGTAGCC 59.896 55.000 30.15 0.00 43.65 3.93
346 349 0.819582 ACCAATGCATTGCAGGTAGC 59.180 50.000 30.15 0.00 43.65 3.58
347 350 2.572191 CACCAATGCATTGCAGGTAG 57.428 50.000 30.15 18.92 43.65 3.18
359 362 2.159338 GCACCTCATGTAAGCACCAATG 60.159 50.000 0.00 0.00 0.00 2.82
360 363 2.094675 GCACCTCATGTAAGCACCAAT 58.905 47.619 0.00 0.00 0.00 3.16
361 364 1.073763 AGCACCTCATGTAAGCACCAA 59.926 47.619 0.00 0.00 0.00 3.67
362 365 0.692476 AGCACCTCATGTAAGCACCA 59.308 50.000 0.00 0.00 0.00 4.17
363 366 2.691409 TAGCACCTCATGTAAGCACC 57.309 50.000 0.00 0.00 0.00 5.01
364 367 2.352960 GCTTAGCACCTCATGTAAGCAC 59.647 50.000 15.05 0.00 41.99 4.40
365 368 2.027285 TGCTTAGCACCTCATGTAAGCA 60.027 45.455 17.49 17.49 45.42 3.91
366 369 2.632377 TGCTTAGCACCTCATGTAAGC 58.368 47.619 1.39 13.71 42.33 3.09
378 381 6.567687 TGCTAAAGTTTAATGTGCTTAGCA 57.432 33.333 1.39 1.39 35.60 3.49
379 382 7.084486 AGTTGCTAAAGTTTAATGTGCTTAGC 58.916 34.615 0.00 0.00 0.00 3.09
382 385 9.810545 TTTTAGTTGCTAAAGTTTAATGTGCTT 57.189 25.926 0.00 0.00 37.27 3.91
383 386 9.244799 GTTTTAGTTGCTAAAGTTTAATGTGCT 57.755 29.630 0.00 0.00 37.27 4.40
384 387 8.484799 GGTTTTAGTTGCTAAAGTTTAATGTGC 58.515 33.333 0.00 0.00 37.27 4.57
385 388 8.974408 GGGTTTTAGTTGCTAAAGTTTAATGTG 58.026 33.333 0.00 0.00 37.27 3.21
386 389 8.145767 GGGGTTTTAGTTGCTAAAGTTTAATGT 58.854 33.333 0.00 0.00 37.27 2.71
387 390 8.364894 AGGGGTTTTAGTTGCTAAAGTTTAATG 58.635 33.333 0.00 0.00 37.27 1.90
388 391 8.486942 AGGGGTTTTAGTTGCTAAAGTTTAAT 57.513 30.769 0.00 0.00 37.27 1.40
389 392 7.901283 AGGGGTTTTAGTTGCTAAAGTTTAA 57.099 32.000 0.00 0.00 37.27 1.52
390 393 8.993404 TTAGGGGTTTTAGTTGCTAAAGTTTA 57.007 30.769 0.00 0.00 37.27 2.01
391 394 7.901283 TTAGGGGTTTTAGTTGCTAAAGTTT 57.099 32.000 0.00 0.00 37.27 2.66
392 395 7.524863 GCATTAGGGGTTTTAGTTGCTAAAGTT 60.525 37.037 2.26 0.00 37.27 2.66
393 396 6.071560 GCATTAGGGGTTTTAGTTGCTAAAGT 60.072 38.462 2.26 0.00 37.27 2.66
394 397 6.071616 TGCATTAGGGGTTTTAGTTGCTAAAG 60.072 38.462 2.26 0.00 37.27 1.85
395 398 5.775701 TGCATTAGGGGTTTTAGTTGCTAAA 59.224 36.000 0.00 0.00 34.62 1.85
396 399 5.326069 TGCATTAGGGGTTTTAGTTGCTAA 58.674 37.500 0.00 0.00 0.00 3.09
397 400 4.924625 TGCATTAGGGGTTTTAGTTGCTA 58.075 39.130 0.00 0.00 0.00 3.49
398 401 3.773560 TGCATTAGGGGTTTTAGTTGCT 58.226 40.909 0.00 0.00 0.00 3.91
399 402 4.736126 ATGCATTAGGGGTTTTAGTTGC 57.264 40.909 0.00 0.00 0.00 4.17
400 403 7.651808 CATCTATGCATTAGGGGTTTTAGTTG 58.348 38.462 3.54 0.00 0.00 3.16
401 404 7.823745 CATCTATGCATTAGGGGTTTTAGTT 57.176 36.000 3.54 0.00 0.00 2.24
418 421 5.124457 AGCACCAACAAGTTAAGCATCTATG 59.876 40.000 0.00 0.00 0.00 2.23
419 422 5.256474 AGCACCAACAAGTTAAGCATCTAT 58.744 37.500 0.00 0.00 0.00 1.98
420 423 4.651778 AGCACCAACAAGTTAAGCATCTA 58.348 39.130 0.00 0.00 0.00 1.98
421 424 3.490348 AGCACCAACAAGTTAAGCATCT 58.510 40.909 0.00 0.00 0.00 2.90
422 425 3.923017 AGCACCAACAAGTTAAGCATC 57.077 42.857 0.00 0.00 0.00 3.91
423 426 4.321230 GCTTAGCACCAACAAGTTAAGCAT 60.321 41.667 13.60 0.00 46.85 3.79
424 427 3.004315 GCTTAGCACCAACAAGTTAAGCA 59.996 43.478 13.60 0.00 46.85 3.91
425 428 3.565516 GCTTAGCACCAACAAGTTAAGC 58.434 45.455 0.00 0.00 43.66 3.09
426 429 4.829064 TGCTTAGCACCAACAAGTTAAG 57.171 40.909 1.39 0.00 31.71 1.85
427 430 4.217550 GGATGCTTAGCACCAACAAGTTAA 59.782 41.667 9.82 0.00 43.04 2.01
428 431 3.756434 GGATGCTTAGCACCAACAAGTTA 59.244 43.478 9.82 0.00 43.04 2.24
429 432 2.558359 GGATGCTTAGCACCAACAAGTT 59.442 45.455 9.82 0.00 43.04 2.66
430 433 2.162681 GGATGCTTAGCACCAACAAGT 58.837 47.619 9.82 0.00 43.04 3.16
431 434 2.440409 AGGATGCTTAGCACCAACAAG 58.560 47.619 21.37 0.00 43.04 3.16
432 435 2.584835 AGGATGCTTAGCACCAACAA 57.415 45.000 21.37 0.00 43.04 2.83
433 436 2.224744 TGAAGGATGCTTAGCACCAACA 60.225 45.455 21.37 17.66 43.04 3.33
434 437 2.436417 TGAAGGATGCTTAGCACCAAC 58.564 47.619 21.37 16.03 43.04 3.77
435 438 2.877097 TGAAGGATGCTTAGCACCAA 57.123 45.000 21.37 9.03 43.04 3.67
436 439 3.370840 AATGAAGGATGCTTAGCACCA 57.629 42.857 21.37 11.24 43.04 4.17
437 440 4.884164 ACTAAATGAAGGATGCTTAGCACC 59.116 41.667 9.82 13.03 43.04 5.01
438 441 5.586243 TCACTAAATGAAGGATGCTTAGCAC 59.414 40.000 9.82 3.57 36.26 4.40
439 442 5.744171 TCACTAAATGAAGGATGCTTAGCA 58.256 37.500 10.09 10.09 37.39 3.49
440 443 6.874288 ATCACTAAATGAAGGATGCTTAGC 57.126 37.500 0.00 0.00 41.93 3.09
441 444 9.512435 CAAAATCACTAAATGAAGGATGCTTAG 57.488 33.333 0.00 0.00 41.93 2.18
442 445 7.975616 GCAAAATCACTAAATGAAGGATGCTTA 59.024 33.333 0.00 0.00 41.93 3.09
443 446 6.815142 GCAAAATCACTAAATGAAGGATGCTT 59.185 34.615 0.00 0.00 41.93 3.91
444 447 6.071221 TGCAAAATCACTAAATGAAGGATGCT 60.071 34.615 0.00 0.00 41.93 3.79
445 448 6.101332 TGCAAAATCACTAAATGAAGGATGC 58.899 36.000 0.00 0.00 41.93 3.91
446 449 7.599621 TGTTGCAAAATCACTAAATGAAGGATG 59.400 33.333 0.00 0.00 41.93 3.51
447 450 7.669427 TGTTGCAAAATCACTAAATGAAGGAT 58.331 30.769 0.00 0.00 41.93 3.24
448 451 7.048629 TGTTGCAAAATCACTAAATGAAGGA 57.951 32.000 0.00 0.00 41.93 3.36
449 452 7.712264 TTGTTGCAAAATCACTAAATGAAGG 57.288 32.000 0.00 0.00 41.93 3.46
450 453 8.819974 ACTTTGTTGCAAAATCACTAAATGAAG 58.180 29.630 0.00 0.00 41.93 3.02
451 454 8.715191 ACTTTGTTGCAAAATCACTAAATGAA 57.285 26.923 0.00 0.00 41.93 2.57
452 455 8.715191 AACTTTGTTGCAAAATCACTAAATGA 57.285 26.923 0.00 0.00 43.13 2.57
453 456 8.819974 AGAACTTTGTTGCAAAATCACTAAATG 58.180 29.630 0.00 0.00 0.00 2.32
454 457 8.947055 AGAACTTTGTTGCAAAATCACTAAAT 57.053 26.923 0.00 0.00 0.00 1.40
455 458 8.770438 AAGAACTTTGTTGCAAAATCACTAAA 57.230 26.923 0.00 0.00 0.00 1.85
456 459 8.031864 TGAAGAACTTTGTTGCAAAATCACTAA 58.968 29.630 0.00 0.00 0.00 2.24
457 460 7.542890 TGAAGAACTTTGTTGCAAAATCACTA 58.457 30.769 0.00 0.00 0.00 2.74
458 461 6.397272 TGAAGAACTTTGTTGCAAAATCACT 58.603 32.000 0.00 0.00 0.00 3.41
459 462 6.645700 TGAAGAACTTTGTTGCAAAATCAC 57.354 33.333 0.00 0.00 0.00 3.06
460 463 6.238157 GCATGAAGAACTTTGTTGCAAAATCA 60.238 34.615 0.00 0.00 0.00 2.57
461 464 6.131389 GCATGAAGAACTTTGTTGCAAAATC 58.869 36.000 0.00 0.00 0.00 2.17
462 465 5.585445 TGCATGAAGAACTTTGTTGCAAAAT 59.415 32.000 0.00 0.00 0.00 1.82
463 466 4.934001 TGCATGAAGAACTTTGTTGCAAAA 59.066 33.333 0.00 0.00 0.00 2.44
464 467 4.502016 TGCATGAAGAACTTTGTTGCAAA 58.498 34.783 0.00 0.00 0.00 3.68
465 468 4.120792 TGCATGAAGAACTTTGTTGCAA 57.879 36.364 0.00 0.00 0.00 4.08
466 469 3.797451 TGCATGAAGAACTTTGTTGCA 57.203 38.095 0.00 12.39 0.00 4.08
467 470 3.362831 CGATGCATGAAGAACTTTGTTGC 59.637 43.478 2.46 0.00 0.00 4.17
468 471 3.916172 CCGATGCATGAAGAACTTTGTTG 59.084 43.478 2.46 0.00 0.00 3.33
469 472 3.569701 ACCGATGCATGAAGAACTTTGTT 59.430 39.130 2.46 0.00 0.00 2.83
470 473 3.058016 CACCGATGCATGAAGAACTTTGT 60.058 43.478 2.46 0.00 0.00 2.83
471 474 3.495193 CACCGATGCATGAAGAACTTTG 58.505 45.455 2.46 0.00 0.00 2.77
472 475 2.489329 CCACCGATGCATGAAGAACTTT 59.511 45.455 2.46 0.00 0.00 2.66
473 476 2.086869 CCACCGATGCATGAAGAACTT 58.913 47.619 2.46 0.00 0.00 2.66
474 477 1.679944 CCCACCGATGCATGAAGAACT 60.680 52.381 2.46 0.00 0.00 3.01
475 478 0.734889 CCCACCGATGCATGAAGAAC 59.265 55.000 2.46 0.00 0.00 3.01
476 479 1.031571 GCCCACCGATGCATGAAGAA 61.032 55.000 2.46 0.00 0.00 2.52
477 480 1.451927 GCCCACCGATGCATGAAGA 60.452 57.895 2.46 0.00 0.00 2.87
478 481 1.033746 AAGCCCACCGATGCATGAAG 61.034 55.000 2.46 0.00 0.00 3.02
479 482 1.001020 AAGCCCACCGATGCATGAA 60.001 52.632 2.46 0.00 0.00 2.57
480 483 1.451927 GAAGCCCACCGATGCATGA 60.452 57.895 2.46 0.00 0.00 3.07
481 484 1.033746 AAGAAGCCCACCGATGCATG 61.034 55.000 2.46 0.00 0.00 4.06
482 485 0.749454 GAAGAAGCCCACCGATGCAT 60.749 55.000 0.00 0.00 0.00 3.96
483 486 1.377202 GAAGAAGCCCACCGATGCA 60.377 57.895 0.00 0.00 0.00 3.96
484 487 2.115291 GGAAGAAGCCCACCGATGC 61.115 63.158 0.00 0.00 0.00 3.91
485 488 0.107017 ATGGAAGAAGCCCACCGATG 60.107 55.000 0.00 0.00 36.36 3.84
486 489 0.625849 AATGGAAGAAGCCCACCGAT 59.374 50.000 0.00 0.00 36.36 4.18
487 490 0.404040 AAATGGAAGAAGCCCACCGA 59.596 50.000 0.00 0.00 36.36 4.69
488 491 2.122783 TAAATGGAAGAAGCCCACCG 57.877 50.000 0.00 0.00 36.36 4.94
489 492 3.193479 CACTTAAATGGAAGAAGCCCACC 59.807 47.826 0.00 0.00 36.36 4.61
490 493 3.826729 ACACTTAAATGGAAGAAGCCCAC 59.173 43.478 0.00 0.00 36.36 4.61
491 494 4.112634 ACACTTAAATGGAAGAAGCCCA 57.887 40.909 0.00 0.00 38.19 5.36
492 495 5.468540 AAACACTTAAATGGAAGAAGCCC 57.531 39.130 0.00 0.00 0.00 5.19
493 496 5.177511 GCAAAACACTTAAATGGAAGAAGCC 59.822 40.000 0.00 0.00 0.00 4.35
494 497 5.177511 GGCAAAACACTTAAATGGAAGAAGC 59.822 40.000 0.00 0.00 0.00 3.86
495 498 5.402270 CGGCAAAACACTTAAATGGAAGAAG 59.598 40.000 0.00 0.00 0.00 2.85
496 499 5.067936 TCGGCAAAACACTTAAATGGAAGAA 59.932 36.000 0.00 0.00 0.00 2.52
497 500 4.580995 TCGGCAAAACACTTAAATGGAAGA 59.419 37.500 0.00 0.00 0.00 2.87
498 501 4.865776 TCGGCAAAACACTTAAATGGAAG 58.134 39.130 0.00 0.00 0.00 3.46
499 502 4.261825 CCTCGGCAAAACACTTAAATGGAA 60.262 41.667 0.00 0.00 0.00 3.53
500 503 3.254657 CCTCGGCAAAACACTTAAATGGA 59.745 43.478 0.00 0.00 0.00 3.41
501 504 3.005367 ACCTCGGCAAAACACTTAAATGG 59.995 43.478 0.00 0.00 0.00 3.16
502 505 4.237349 ACCTCGGCAAAACACTTAAATG 57.763 40.909 0.00 0.00 0.00 2.32
503 506 4.583073 AGAACCTCGGCAAAACACTTAAAT 59.417 37.500 0.00 0.00 0.00 1.40
504 507 3.949113 AGAACCTCGGCAAAACACTTAAA 59.051 39.130 0.00 0.00 0.00 1.52
505 508 3.547746 AGAACCTCGGCAAAACACTTAA 58.452 40.909 0.00 0.00 0.00 1.85
506 509 3.135994 GAGAACCTCGGCAAAACACTTA 58.864 45.455 0.00 0.00 0.00 2.24
507 510 1.947456 GAGAACCTCGGCAAAACACTT 59.053 47.619 0.00 0.00 0.00 3.16
508 511 1.594331 GAGAACCTCGGCAAAACACT 58.406 50.000 0.00 0.00 0.00 3.55
519 522 0.674895 ATGCCAAGCACGAGAACCTC 60.675 55.000 0.00 0.00 43.04 3.85
520 523 0.250901 AATGCCAAGCACGAGAACCT 60.251 50.000 0.00 0.00 43.04 3.50
521 524 0.109597 CAATGCCAAGCACGAGAACC 60.110 55.000 0.00 0.00 43.04 3.62
522 525 0.593128 ACAATGCCAAGCACGAGAAC 59.407 50.000 0.00 0.00 43.04 3.01
523 526 1.317613 AACAATGCCAAGCACGAGAA 58.682 45.000 0.00 0.00 43.04 2.87
524 527 1.266718 GAAACAATGCCAAGCACGAGA 59.733 47.619 0.00 0.00 43.04 4.04
525 528 1.267806 AGAAACAATGCCAAGCACGAG 59.732 47.619 0.00 0.00 43.04 4.18
526 529 1.317613 AGAAACAATGCCAAGCACGA 58.682 45.000 0.00 0.00 43.04 4.35
527 530 2.053627 GAAGAAACAATGCCAAGCACG 58.946 47.619 0.00 0.00 43.04 5.34
528 531 2.036346 AGGAAGAAACAATGCCAAGCAC 59.964 45.455 0.00 0.00 43.04 4.40
529 532 2.036217 CAGGAAGAAACAATGCCAAGCA 59.964 45.455 0.00 0.00 44.86 3.91
530 533 2.611224 CCAGGAAGAAACAATGCCAAGC 60.611 50.000 0.00 0.00 0.00 4.01
531 534 2.028748 CCCAGGAAGAAACAATGCCAAG 60.029 50.000 0.00 0.00 0.00 3.61
532 535 1.969923 CCCAGGAAGAAACAATGCCAA 59.030 47.619 0.00 0.00 0.00 4.52
533 536 1.631405 CCCAGGAAGAAACAATGCCA 58.369 50.000 0.00 0.00 0.00 4.92
534 537 0.897621 CCCCAGGAAGAAACAATGCC 59.102 55.000 0.00 0.00 0.00 4.40
535 538 1.632589 ACCCCAGGAAGAAACAATGC 58.367 50.000 0.00 0.00 0.00 3.56
536 539 3.509967 GGTAACCCCAGGAAGAAACAATG 59.490 47.826 0.00 0.00 0.00 2.82
537 540 3.141272 TGGTAACCCCAGGAAGAAACAAT 59.859 43.478 0.00 0.00 38.72 2.71
538 541 2.514582 TGGTAACCCCAGGAAGAAACAA 59.485 45.455 0.00 0.00 38.72 2.83
539 542 2.136863 TGGTAACCCCAGGAAGAAACA 58.863 47.619 0.00 0.00 38.72 2.83
540 543 2.963599 TGGTAACCCCAGGAAGAAAC 57.036 50.000 0.00 0.00 38.72 2.78
550 553 1.771255 AGAGATGAGCATGGTAACCCC 59.229 52.381 0.00 0.00 0.00 4.95
551 554 2.703007 AGAGAGATGAGCATGGTAACCC 59.297 50.000 0.00 0.00 0.00 4.11
552 555 3.244044 GGAGAGAGATGAGCATGGTAACC 60.244 52.174 0.00 0.00 0.00 2.85
553 556 3.640967 AGGAGAGAGATGAGCATGGTAAC 59.359 47.826 0.00 0.00 0.00 2.50
554 557 3.894427 GAGGAGAGAGATGAGCATGGTAA 59.106 47.826 0.00 0.00 0.00 2.85
555 558 3.139957 AGAGGAGAGAGATGAGCATGGTA 59.860 47.826 0.00 0.00 0.00 3.25
556 559 2.091166 AGAGGAGAGAGATGAGCATGGT 60.091 50.000 0.00 0.00 0.00 3.55
557 560 2.600790 AGAGGAGAGAGATGAGCATGG 58.399 52.381 0.00 0.00 0.00 3.66
558 561 5.787953 TTAAGAGGAGAGAGATGAGCATG 57.212 43.478 0.00 0.00 0.00 4.06
559 562 6.999705 AATTAAGAGGAGAGAGATGAGCAT 57.000 37.500 0.00 0.00 0.00 3.79
560 563 6.266558 GGTAATTAAGAGGAGAGAGATGAGCA 59.733 42.308 0.00 0.00 0.00 4.26
561 564 6.493458 AGGTAATTAAGAGGAGAGAGATGAGC 59.507 42.308 0.00 0.00 0.00 4.26
562 565 8.359642 CAAGGTAATTAAGAGGAGAGAGATGAG 58.640 40.741 0.00 0.00 0.00 2.90
563 566 7.841729 ACAAGGTAATTAAGAGGAGAGAGATGA 59.158 37.037 0.00 0.00 0.00 2.92
564 567 8.017418 ACAAGGTAATTAAGAGGAGAGAGATG 57.983 38.462 0.00 0.00 0.00 2.90
565 568 7.841729 TGACAAGGTAATTAAGAGGAGAGAGAT 59.158 37.037 0.00 0.00 0.00 2.75
566 569 7.122948 GTGACAAGGTAATTAAGAGGAGAGAGA 59.877 40.741 0.00 0.00 0.00 3.10
567 570 7.262048 GTGACAAGGTAATTAAGAGGAGAGAG 58.738 42.308 0.00 0.00 0.00 3.20
568 571 6.127703 CGTGACAAGGTAATTAAGAGGAGAGA 60.128 42.308 0.00 0.00 0.00 3.10
569 572 6.037098 CGTGACAAGGTAATTAAGAGGAGAG 58.963 44.000 0.00 0.00 0.00 3.20
570 573 5.479375 ACGTGACAAGGTAATTAAGAGGAGA 59.521 40.000 0.00 0.00 0.00 3.71
571 574 5.721232 ACGTGACAAGGTAATTAAGAGGAG 58.279 41.667 0.00 0.00 0.00 3.69
572 575 5.244402 TGACGTGACAAGGTAATTAAGAGGA 59.756 40.000 0.00 0.00 0.00 3.71
573 576 5.475719 TGACGTGACAAGGTAATTAAGAGG 58.524 41.667 0.00 0.00 0.00 3.69
574 577 6.387465 TCTGACGTGACAAGGTAATTAAGAG 58.613 40.000 0.00 0.00 0.00 2.85
575 578 6.335471 TCTGACGTGACAAGGTAATTAAGA 57.665 37.500 0.00 0.00 0.00 2.10
576 579 7.596749 AATCTGACGTGACAAGGTAATTAAG 57.403 36.000 0.00 0.00 0.00 1.85
577 580 7.972832 AAATCTGACGTGACAAGGTAATTAA 57.027 32.000 0.00 0.00 0.00 1.40
578 581 7.972832 AAAATCTGACGTGACAAGGTAATTA 57.027 32.000 0.00 0.00 0.00 1.40
579 582 6.877611 AAAATCTGACGTGACAAGGTAATT 57.122 33.333 0.00 0.00 0.00 1.40
580 583 6.877611 AAAAATCTGACGTGACAAGGTAAT 57.122 33.333 0.00 0.00 0.00 1.89
600 603 2.875296 AGGCTGTCATGTAGGCAAAAA 58.125 42.857 21.42 0.00 42.62 1.94
601 604 2.584835 AGGCTGTCATGTAGGCAAAA 57.415 45.000 21.42 0.00 42.62 2.44
602 605 2.584835 AAGGCTGTCATGTAGGCAAA 57.415 45.000 21.42 0.00 42.62 3.68
603 606 2.584835 AAAGGCTGTCATGTAGGCAA 57.415 45.000 21.42 0.00 42.62 4.52
604 607 2.680805 GCTAAAGGCTGTCATGTAGGCA 60.681 50.000 21.42 6.77 42.62 4.75
605 608 1.943340 GCTAAAGGCTGTCATGTAGGC 59.057 52.381 15.02 15.02 40.69 3.93
606 609 2.939103 GTGCTAAAGGCTGTCATGTAGG 59.061 50.000 0.00 0.00 42.39 3.18
607 610 2.939103 GGTGCTAAAGGCTGTCATGTAG 59.061 50.000 0.00 0.00 42.39 2.74
608 611 2.571653 AGGTGCTAAAGGCTGTCATGTA 59.428 45.455 0.00 0.00 42.39 2.29
609 612 1.352352 AGGTGCTAAAGGCTGTCATGT 59.648 47.619 0.00 0.00 42.39 3.21
610 613 1.741706 CAGGTGCTAAAGGCTGTCATG 59.258 52.381 0.00 0.00 42.39 3.07
611 614 1.352352 ACAGGTGCTAAAGGCTGTCAT 59.648 47.619 0.00 0.00 42.39 3.06
612 615 0.764890 ACAGGTGCTAAAGGCTGTCA 59.235 50.000 0.00 0.00 42.39 3.58
613 616 2.289444 TGTACAGGTGCTAAAGGCTGTC 60.289 50.000 0.00 0.00 42.39 3.51
614 617 1.697432 TGTACAGGTGCTAAAGGCTGT 59.303 47.619 0.00 0.00 42.39 4.40
615 618 2.472695 TGTACAGGTGCTAAAGGCTG 57.527 50.000 0.00 0.00 42.39 4.85
616 619 2.290323 CCTTGTACAGGTGCTAAAGGCT 60.290 50.000 4.10 0.00 37.99 4.58
617 620 2.084546 CCTTGTACAGGTGCTAAAGGC 58.915 52.381 4.10 0.00 37.99 4.35
628 631 3.678056 TTAGTGCTCCACCTTGTACAG 57.322 47.619 0.00 0.00 34.49 2.74
629 632 4.385825 CTTTTAGTGCTCCACCTTGTACA 58.614 43.478 0.00 0.00 34.49 2.90
630 633 3.751698 CCTTTTAGTGCTCCACCTTGTAC 59.248 47.826 0.00 0.00 34.49 2.90
631 634 3.244770 CCCTTTTAGTGCTCCACCTTGTA 60.245 47.826 0.00 0.00 34.49 2.41
632 635 2.489073 CCCTTTTAGTGCTCCACCTTGT 60.489 50.000 0.00 0.00 34.49 3.16
633 636 2.162681 CCCTTTTAGTGCTCCACCTTG 58.837 52.381 0.00 0.00 34.49 3.61
634 637 1.075536 CCCCTTTTAGTGCTCCACCTT 59.924 52.381 0.00 0.00 34.49 3.50
635 638 0.698818 CCCCTTTTAGTGCTCCACCT 59.301 55.000 0.00 0.00 34.49 4.00
636 639 0.965866 GCCCCTTTTAGTGCTCCACC 60.966 60.000 0.00 0.00 34.49 4.61
637 640 0.965866 GGCCCCTTTTAGTGCTCCAC 60.966 60.000 0.00 0.00 34.10 4.02
638 641 1.140134 AGGCCCCTTTTAGTGCTCCA 61.140 55.000 0.00 0.00 0.00 3.86
639 642 0.039764 AAGGCCCCTTTTAGTGCTCC 59.960 55.000 0.00 0.00 31.29 4.70
640 643 2.801077 TAAGGCCCCTTTTAGTGCTC 57.199 50.000 4.68 0.00 37.47 4.26
641 644 3.536075 TTTAAGGCCCCTTTTAGTGCT 57.464 42.857 4.68 0.00 37.47 4.40
642 645 3.767131 TGATTTAAGGCCCCTTTTAGTGC 59.233 43.478 4.68 0.00 37.47 4.40
643 646 5.016831 AGTGATTTAAGGCCCCTTTTAGTG 58.983 41.667 4.68 0.00 37.47 2.74
644 647 5.270979 AGTGATTTAAGGCCCCTTTTAGT 57.729 39.130 4.68 0.00 37.47 2.24
645 648 6.659824 TCTAGTGATTTAAGGCCCCTTTTAG 58.340 40.000 4.68 0.00 37.47 1.85
646 649 6.645884 TCTAGTGATTTAAGGCCCCTTTTA 57.354 37.500 4.68 0.00 37.47 1.52
647 650 5.530176 TCTAGTGATTTAAGGCCCCTTTT 57.470 39.130 4.68 0.00 37.47 2.27
648 651 5.530176 TTCTAGTGATTTAAGGCCCCTTT 57.470 39.130 4.68 0.00 37.47 3.11
649 652 5.734031 ATTCTAGTGATTTAAGGCCCCTT 57.266 39.130 0.00 4.77 39.83 3.95
650 653 6.841781 TTATTCTAGTGATTTAAGGCCCCT 57.158 37.500 0.00 0.00 0.00 4.79
651 654 7.231467 TCATTATTCTAGTGATTTAAGGCCCC 58.769 38.462 0.00 0.00 0.00 5.80
652 655 8.870075 ATCATTATTCTAGTGATTTAAGGCCC 57.130 34.615 0.00 0.00 32.03 5.80
653 656 9.732130 AGATCATTATTCTAGTGATTTAAGGCC 57.268 33.333 0.00 0.00 35.59 5.19
755 759 1.025041 GGGAAACGGAGGCAATGATC 58.975 55.000 0.00 0.00 0.00 2.92
767 773 2.139917 TCAATGTCGAACAGGGAAACG 58.860 47.619 0.00 0.00 0.00 3.60
772 778 2.751166 ACTCTCAATGTCGAACAGGG 57.249 50.000 0.00 0.00 0.00 4.45
838 945 3.858868 TTGCGGCCGTCACTGTCTC 62.859 63.158 28.70 6.86 0.00 3.36
839 946 3.865929 CTTGCGGCCGTCACTGTCT 62.866 63.158 28.70 0.00 0.00 3.41
884 1311 0.464036 CTGGTTGGTAGCAGCGGATA 59.536 55.000 2.57 0.00 42.37 2.59
887 1314 0.392998 ATTCTGGTTGGTAGCAGCGG 60.393 55.000 2.57 0.18 46.88 5.52
893 1320 5.125900 TGCATTTGATGATTCTGGTTGGTAG 59.874 40.000 0.00 0.00 0.00 3.18
942 1369 5.750067 AGTCTTTAGTGCAAACAAAGCATTG 59.250 36.000 0.00 0.00 44.79 2.82
967 1394 9.836076 GTGTGTCTTAATTTGGTTCCTTTATAC 57.164 33.333 0.00 0.00 0.00 1.47
973 1406 5.067283 GTGTGTGTGTCTTAATTTGGTTCCT 59.933 40.000 0.00 0.00 0.00 3.36
974 1407 5.163602 TGTGTGTGTGTCTTAATTTGGTTCC 60.164 40.000 0.00 0.00 0.00 3.62
976 1409 5.184096 TGTGTGTGTGTGTCTTAATTTGGTT 59.816 36.000 0.00 0.00 0.00 3.67
993 1439 2.325583 AGGGTTAGTGTGTGTGTGTG 57.674 50.000 0.00 0.00 0.00 3.82
994 1440 2.224209 GCTAGGGTTAGTGTGTGTGTGT 60.224 50.000 0.00 0.00 0.00 3.72
995 1441 2.037251 AGCTAGGGTTAGTGTGTGTGTG 59.963 50.000 0.00 0.00 0.00 3.82
996 1442 2.299297 GAGCTAGGGTTAGTGTGTGTGT 59.701 50.000 0.00 0.00 0.00 3.72
1136 1586 2.868196 CGACGAGACAGGAAGCGA 59.132 61.111 0.00 0.00 0.00 4.93
1188 1638 1.160329 GCACTGGCCGGATGATGTAC 61.160 60.000 21.41 0.00 0.00 2.90
1193 1643 4.408821 GGTGCACTGGCCGGATGA 62.409 66.667 21.41 0.00 40.13 2.92
1194 1644 4.415150 AGGTGCACTGGCCGGATG 62.415 66.667 21.41 13.96 40.13 3.51
1195 1645 4.415150 CAGGTGCACTGGCCGGAT 62.415 66.667 21.41 0.00 43.70 4.18
1264 1714 1.002684 GGCGTAGTCGATCAGGTACAG 60.003 57.143 0.00 0.00 39.71 2.74
1464 1923 2.357034 GCGTTCTCGAGGGTGCAA 60.357 61.111 13.56 0.00 39.71 4.08
1503 1962 4.012138 TCGATGGCCGAGAAGACA 57.988 55.556 0.00 0.00 43.23 3.41
1704 2163 0.815615 GCAGGAGGTTATTGGCGAGG 60.816 60.000 0.00 0.00 0.00 4.63
1875 2334 2.604079 TTGAGGCGGAACCGGGTA 60.604 61.111 15.01 0.00 46.52 3.69
1876 2335 4.016706 CTTGAGGCGGAACCGGGT 62.017 66.667 15.01 0.00 46.52 5.28
1923 2385 0.599991 CGCACTGGTAAGCACTGTCA 60.600 55.000 0.00 0.00 0.00 3.58
1937 2399 1.821061 CTCCTCCTGGAACACGCACT 61.821 60.000 0.00 0.00 42.66 4.40
2079 2541 1.269448 GCAACAAAGGAGATGGCGAAA 59.731 47.619 0.00 0.00 0.00 3.46
2218 2683 3.443925 CTGCTCGTCGGAGAGGCA 61.444 66.667 9.46 7.30 43.27 4.75
2269 2734 2.159544 GCGAGCTACTAGACGTGTTTCT 60.160 50.000 0.00 0.00 0.00 2.52
2458 2923 0.541392 TCGGGAATGTCCACTGGATG 59.459 55.000 0.00 0.00 38.64 3.51
2501 2981 5.130350 CGTCTGGGATGGGTTTATTATGTT 58.870 41.667 0.00 0.00 0.00 2.71
2516 2996 0.393820 GTTTACACCACCGTCTGGGA 59.606 55.000 1.71 0.00 45.78 4.37
2530 3010 7.698970 CGTATGGGGTTTATTGTTCATGTTTAC 59.301 37.037 0.00 0.00 0.00 2.01
2567 3047 8.280909 AGATAACGTTTACAATTGTTGCAAAG 57.719 30.769 17.78 11.76 0.00 2.77
2576 3056 7.041372 AGCACACAGAAGATAACGTTTACAATT 60.041 33.333 5.91 0.00 0.00 2.32
2584 3064 3.318017 GTGAGCACACAGAAGATAACGT 58.682 45.455 9.58 0.00 45.32 3.99
2613 3094 8.038351 TGATAAAAGAGACATTCGGTTACATGA 58.962 33.333 0.00 0.00 0.00 3.07
2640 3121 1.501169 TCACACACATCGCAAGTGAG 58.499 50.000 7.11 2.32 40.16 3.51
2646 3127 1.738908 CAATCCATCACACACATCGCA 59.261 47.619 0.00 0.00 0.00 5.10
2664 3145 5.070981 TCAAAGCCCATTTGTAATCCAACAA 59.929 36.000 0.74 0.00 46.96 2.83
2747 6655 8.788325 ACAGTATGGTACTAAACTTTTCATCC 57.212 34.615 0.00 0.00 43.62 3.51
2786 6694 6.435164 AGCAACCTTTATAAATGGGTCTCAT 58.565 36.000 9.03 0.00 37.79 2.90
2806 6714 8.998277 ACTTCCTATAGTAAGTGATAGAGCAA 57.002 34.615 9.71 0.00 34.70 3.91
2814 6722 9.529823 TCTTCTCAAACTTCCTATAGTAAGTGA 57.470 33.333 11.10 5.17 36.12 3.41
2817 6725 9.191479 TCCTCTTCTCAAACTTCCTATAGTAAG 57.809 37.037 3.65 3.65 0.00 2.34
2820 6728 8.482128 CATTCCTCTTCTCAAACTTCCTATAGT 58.518 37.037 0.00 0.00 0.00 2.12
2822 6730 8.609617 TCATTCCTCTTCTCAAACTTCCTATA 57.390 34.615 0.00 0.00 0.00 1.31
2825 6733 5.832539 TCATTCCTCTTCTCAAACTTCCT 57.167 39.130 0.00 0.00 0.00 3.36
2835 6750 5.366186 AGCTCATGTGTATCATTCCTCTTCT 59.634 40.000 0.00 0.00 34.09 2.85
2847 6762 0.390860 GCGGAGGAGCTCATGTGTAT 59.609 55.000 17.19 0.00 31.08 2.29
2896 6811 2.282783 ATCCCTGGCCGGCAAAAAC 61.283 57.895 30.85 11.16 0.00 2.43
2951 6866 0.179020 CTTGGACAGTGGCACTTCCA 60.179 55.000 30.61 30.61 44.18 3.53
3059 6975 1.616865 TGAGTTAGGGTTCACTCCACG 59.383 52.381 0.00 0.00 39.02 4.94
3081 6997 1.120530 CTAGGGTTATGTGGGAGCGT 58.879 55.000 0.00 0.00 0.00 5.07
3083 7008 2.238898 ACAACTAGGGTTATGTGGGAGC 59.761 50.000 0.00 0.00 33.88 4.70
3102 7027 8.708378 ACACAATGAGAGGAAGAATATATGACA 58.292 33.333 0.00 0.00 0.00 3.58
3108 7033 6.097554 AGACGACACAATGAGAGGAAGAATAT 59.902 38.462 0.00 0.00 0.00 1.28
3113 7038 3.584406 AGACGACACAATGAGAGGAAG 57.416 47.619 0.00 0.00 0.00 3.46
3131 7056 2.507854 GGGATGGGATCGCCGAAGA 61.508 63.158 7.38 0.00 36.34 2.87
3156 7081 2.010582 TTTTGACCAACCTGCACGCC 62.011 55.000 0.00 0.00 0.00 5.68
3176 7102 1.280421 GGATTCTGGAGACACCTGCTT 59.720 52.381 0.00 0.00 39.86 3.91
3185 7111 1.067142 CAAACGACGGGATTCTGGAGA 60.067 52.381 0.00 0.00 0.00 3.71
3190 7116 2.159085 GGATCTCAAACGACGGGATTCT 60.159 50.000 0.00 0.00 0.00 2.40
3194 7120 0.530744 CAGGATCTCAAACGACGGGA 59.469 55.000 0.00 0.00 0.00 5.14
3228 7154 2.422479 GACGCTCCCCAAAAACCTTATC 59.578 50.000 0.00 0.00 0.00 1.75
3256 7182 1.499438 TGGATGGATCGGGAGTAGTCT 59.501 52.381 0.00 0.00 0.00 3.24
3261 7189 1.123928 GACTTGGATGGATCGGGAGT 58.876 55.000 0.00 0.00 0.00 3.85
3276 7206 2.039137 GGAGGAGGACGGGGACTT 59.961 66.667 0.00 0.00 0.00 3.01
3294 7224 2.447443 TGCAGGAGAAGTAGTCGATGT 58.553 47.619 0.00 0.00 0.00 3.06
3329 7259 2.357517 CTTCTTGGTGGCGTCGCT 60.358 61.111 18.11 0.00 0.00 4.93
3330 7260 1.901650 CTTCTTCTTGGTGGCGTCGC 61.902 60.000 9.22 9.22 0.00 5.19
3338 7268 0.606673 GCGGCCTTCTTCTTCTTGGT 60.607 55.000 0.00 0.00 0.00 3.67
3342 7272 2.266055 CCGCGGCCTTCTTCTTCT 59.734 61.111 14.67 0.00 0.00 2.85
3343 7273 2.101233 GTCCGCGGCCTTCTTCTTC 61.101 63.158 23.51 0.00 0.00 2.87
3370 7301 1.954146 GTCGGCGACAACAGCAGAA 60.954 57.895 33.07 0.00 40.19 3.02
3371 7302 2.355837 GTCGGCGACAACAGCAGA 60.356 61.111 33.07 0.00 36.53 4.26
3447 7390 6.688385 CCAAAACATCTATGAACGCAACATAG 59.312 38.462 14.01 14.01 44.71 2.23
3455 7398 8.425577 AGATAGAACCAAAACATCTATGAACG 57.574 34.615 0.00 0.00 36.71 3.95
3479 7422 1.920574 GCATGTGAGCACGTACAGTAG 59.079 52.381 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.