Multiple sequence alignment - TraesCS7B01G449200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G449200 chr7B 100.000 2615 0 0 1 2615 711486470 711483856 0.000000e+00 4830
1 TraesCS7B01G449200 chr7B 90.115 435 37 4 1161 1595 711000738 711001166 6.320000e-156 560
2 TraesCS7B01G449200 chr7D 91.920 1844 92 23 790 2615 617117186 617115382 0.000000e+00 2527
3 TraesCS7B01G449200 chr7D 85.995 814 66 20 581 1391 617374762 617373994 0.000000e+00 828
4 TraesCS7B01G449200 chr7D 90.135 446 38 4 1150 1595 616908300 616908739 2.260000e-160 575
5 TraesCS7B01G449200 chr7A 91.487 881 35 9 821 1699 709999065 709998223 0.000000e+00 1175
6 TraesCS7B01G449200 chr7A 92.152 446 29 4 1150 1595 709674560 709674999 2.210000e-175 625
7 TraesCS7B01G449200 chr7A 92.204 372 28 1 1736 2106 709992906 709992535 2.310000e-145 525
8 TraesCS7B01G449200 chr7A 90.997 311 21 7 2125 2429 709992220 709991911 1.870000e-111 412
9 TraesCS7B01G449200 chr7A 96.809 188 5 1 2429 2615 709991667 709991480 1.950000e-81 313
10 TraesCS7B01G449200 chr7A 82.292 192 27 5 396 580 638488435 638488244 2.690000e-35 159
11 TraesCS7B01G449200 chr1B 92.553 188 11 3 396 580 586288811 586288998 1.540000e-67 267
12 TraesCS7B01G449200 chr2D 90.798 163 12 3 1823 1983 435149422 435149261 5.670000e-52 215
13 TraesCS7B01G449200 chr3A 85.864 191 20 3 396 579 651603157 651602967 2.050000e-46 196
14 TraesCS7B01G449200 chr3A 84.783 184 22 6 1804 1985 695773132 695772953 2.070000e-41 180
15 TraesCS7B01G449200 chr5D 85.714 182 24 2 1804 1983 112953774 112953593 9.550000e-45 191
16 TraesCS7B01G449200 chr5A 84.615 182 25 3 1804 1983 118388908 118388728 7.440000e-41 178
17 TraesCS7B01G449200 chr6A 80.928 194 25 6 396 580 183262670 183262480 2.710000e-30 143
18 TraesCS7B01G449200 chr3D 83.582 134 16 6 1855 1984 122568628 122568497 1.270000e-23 121
19 TraesCS7B01G449200 chr3B 80.503 159 18 8 396 547 110227625 110227473 2.750000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G449200 chr7B 711483856 711486470 2614 True 4830.000000 4830 100.000000 1 2615 1 chr7B.!!$R1 2614
1 TraesCS7B01G449200 chr7D 617115382 617117186 1804 True 2527.000000 2527 91.920000 790 2615 1 chr7D.!!$R1 1825
2 TraesCS7B01G449200 chr7D 617373994 617374762 768 True 828.000000 828 85.995000 581 1391 1 chr7D.!!$R2 810
3 TraesCS7B01G449200 chr7A 709998223 709999065 842 True 1175.000000 1175 91.487000 821 1699 1 chr7A.!!$R2 878
4 TraesCS7B01G449200 chr7A 709991480 709992906 1426 True 416.666667 525 93.336667 1736 2615 3 chr7A.!!$R3 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 0.034477 AAGGCCCTTACGAACATGGG 60.034 55.0 0.0 0.0 42.41 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2116 0.690762 TTCTCTACGCCTGGGCTTTT 59.309 50.0 10.04 0.0 39.32 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 6.409524 TTTTCAAAATCTGTGAGCATTCCT 57.590 33.333 0.00 0.00 0.00 3.36
63 64 5.381174 TTCAAAATCTGTGAGCATTCCTG 57.619 39.130 0.00 0.00 0.00 3.86
64 65 4.654915 TCAAAATCTGTGAGCATTCCTGA 58.345 39.130 0.00 0.00 0.00 3.86
65 66 5.072055 TCAAAATCTGTGAGCATTCCTGAA 58.928 37.500 0.00 0.00 0.00 3.02
66 67 5.713389 TCAAAATCTGTGAGCATTCCTGAAT 59.287 36.000 0.00 0.00 0.00 2.57
67 68 6.209986 TCAAAATCTGTGAGCATTCCTGAATT 59.790 34.615 0.00 0.00 0.00 2.17
68 69 5.831702 AATCTGTGAGCATTCCTGAATTC 57.168 39.130 0.00 0.00 0.00 2.17
69 70 4.290711 TCTGTGAGCATTCCTGAATTCA 57.709 40.909 8.12 8.12 0.00 2.57
70 71 4.005650 TCTGTGAGCATTCCTGAATTCAC 58.994 43.478 3.38 13.87 38.27 3.18
71 72 4.008330 CTGTGAGCATTCCTGAATTCACT 58.992 43.478 18.43 0.00 38.45 3.41
72 73 5.046376 TCTGTGAGCATTCCTGAATTCACTA 60.046 40.000 18.43 9.40 38.45 2.74
73 74 5.559770 TGTGAGCATTCCTGAATTCACTAA 58.440 37.500 18.43 2.13 38.45 2.24
74 75 6.182627 TGTGAGCATTCCTGAATTCACTAAT 58.817 36.000 18.43 4.50 38.45 1.73
75 76 6.660521 TGTGAGCATTCCTGAATTCACTAATT 59.339 34.615 18.43 0.00 38.45 1.40
76 77 7.177216 TGTGAGCATTCCTGAATTCACTAATTT 59.823 33.333 18.43 0.00 38.45 1.82
77 78 8.031277 GTGAGCATTCCTGAATTCACTAATTTT 58.969 33.333 3.38 0.00 36.42 1.82
78 79 8.030692 TGAGCATTCCTGAATTCACTAATTTTG 58.969 33.333 3.38 0.00 35.41 2.44
79 80 7.899973 AGCATTCCTGAATTCACTAATTTTGT 58.100 30.769 3.38 0.00 35.41 2.83
80 81 8.031277 AGCATTCCTGAATTCACTAATTTTGTC 58.969 33.333 3.38 0.00 35.41 3.18
81 82 7.008628 GCATTCCTGAATTCACTAATTTTGTCG 59.991 37.037 3.38 0.00 35.41 4.35
82 83 6.494893 TCCTGAATTCACTAATTTTGTCGG 57.505 37.500 3.38 0.00 35.41 4.79
83 84 6.001460 TCCTGAATTCACTAATTTTGTCGGT 58.999 36.000 3.38 0.00 35.41 4.69
84 85 6.488683 TCCTGAATTCACTAATTTTGTCGGTT 59.511 34.615 3.38 0.00 35.41 4.44
85 86 7.013846 TCCTGAATTCACTAATTTTGTCGGTTT 59.986 33.333 3.38 0.00 35.41 3.27
86 87 7.651704 CCTGAATTCACTAATTTTGTCGGTTTT 59.348 33.333 3.38 0.00 35.41 2.43
87 88 8.934507 TGAATTCACTAATTTTGTCGGTTTTT 57.065 26.923 3.38 0.00 35.41 1.94
88 89 9.026074 TGAATTCACTAATTTTGTCGGTTTTTC 57.974 29.630 3.38 0.00 35.41 2.29
89 90 8.934507 AATTCACTAATTTTGTCGGTTTTTCA 57.065 26.923 0.00 0.00 30.98 2.69
90 91 8.934507 ATTCACTAATTTTGTCGGTTTTTCAA 57.065 26.923 0.00 0.00 0.00 2.69
91 92 8.758633 TTCACTAATTTTGTCGGTTTTTCAAA 57.241 26.923 0.00 0.00 0.00 2.69
92 93 8.401046 TCACTAATTTTGTCGGTTTTTCAAAG 57.599 30.769 0.00 0.00 33.61 2.77
93 94 8.244802 TCACTAATTTTGTCGGTTTTTCAAAGA 58.755 29.630 0.00 0.00 33.61 2.52
94 95 8.865001 CACTAATTTTGTCGGTTTTTCAAAGAA 58.135 29.630 0.00 0.00 33.61 2.52
95 96 9.425577 ACTAATTTTGTCGGTTTTTCAAAGAAA 57.574 25.926 0.00 0.00 33.61 2.52
99 100 9.767684 ATTTTGTCGGTTTTTCAAAGAAAAATC 57.232 25.926 17.45 16.16 33.61 2.17
102 103 5.959652 CGGTTTTTCAAAGAAAAATCGGT 57.040 34.783 28.92 0.00 45.01 4.69
103 104 6.339194 CGGTTTTTCAAAGAAAAATCGGTT 57.661 33.333 28.92 0.00 45.01 4.44
104 105 6.767080 CGGTTTTTCAAAGAAAAATCGGTTT 58.233 32.000 28.92 0.00 45.01 3.27
105 106 7.237871 CGGTTTTTCAAAGAAAAATCGGTTTT 58.762 30.769 28.92 0.00 45.01 2.43
131 132 4.700596 TTTTCGTATTTGCGCCAAAAAG 57.299 36.364 4.18 0.00 36.90 2.27
132 133 3.357166 TTCGTATTTGCGCCAAAAAGT 57.643 38.095 4.18 0.00 36.90 2.66
133 134 2.923643 TCGTATTTGCGCCAAAAAGTC 58.076 42.857 4.18 0.00 36.90 3.01
134 135 2.290916 TCGTATTTGCGCCAAAAAGTCA 59.709 40.909 4.18 0.00 36.90 3.41
135 136 3.046390 CGTATTTGCGCCAAAAAGTCAA 58.954 40.909 4.18 0.00 36.90 3.18
136 137 3.121496 CGTATTTGCGCCAAAAAGTCAAC 60.121 43.478 4.18 0.00 36.90 3.18
137 138 1.272781 TTTGCGCCAAAAAGTCAACG 58.727 45.000 4.18 0.00 29.89 4.10
138 139 0.526524 TTGCGCCAAAAAGTCAACGG 60.527 50.000 4.18 0.00 0.00 4.44
139 140 1.065109 GCGCCAAAAAGTCAACGGT 59.935 52.632 0.00 0.00 0.00 4.83
140 141 0.526739 GCGCCAAAAAGTCAACGGTT 60.527 50.000 0.00 0.00 0.00 4.44
141 142 1.196200 CGCCAAAAAGTCAACGGTTG 58.804 50.000 14.62 14.62 0.00 3.77
142 143 1.468395 CGCCAAAAAGTCAACGGTTGT 60.468 47.619 19.47 0.00 0.00 3.32
143 144 2.190161 GCCAAAAAGTCAACGGTTGTC 58.810 47.619 19.47 14.48 0.00 3.18
144 145 2.446282 CCAAAAAGTCAACGGTTGTCG 58.554 47.619 19.47 2.57 45.88 4.35
145 146 2.446282 CAAAAAGTCAACGGTTGTCGG 58.554 47.619 19.47 0.00 44.45 4.79
146 147 1.741528 AAAAGTCAACGGTTGTCGGT 58.258 45.000 19.47 6.22 44.45 4.69
147 148 1.292992 AAAGTCAACGGTTGTCGGTC 58.707 50.000 19.47 7.46 44.45 4.79
148 149 0.176219 AAGTCAACGGTTGTCGGTCA 59.824 50.000 19.47 0.00 44.45 4.02
149 150 0.176219 AGTCAACGGTTGTCGGTCAA 59.824 50.000 19.47 0.00 44.45 3.18
158 159 1.658994 TTGTCGGTCAACTGGTCAAC 58.341 50.000 0.00 0.00 0.00 3.18
159 160 0.179067 TGTCGGTCAACTGGTCAACC 60.179 55.000 0.00 0.00 0.00 3.77
160 161 0.883370 GTCGGTCAACTGGTCAACCC 60.883 60.000 0.00 0.00 34.29 4.11
161 162 1.052124 TCGGTCAACTGGTCAACCCT 61.052 55.000 0.00 0.00 34.29 4.34
162 163 0.682852 CGGTCAACTGGTCAACCCTA 59.317 55.000 0.00 0.00 34.29 3.53
163 164 1.337823 CGGTCAACTGGTCAACCCTAG 60.338 57.143 0.00 0.00 34.29 3.02
164 165 1.003233 GGTCAACTGGTCAACCCTAGG 59.997 57.143 0.06 0.06 34.29 3.02
165 166 1.975680 GTCAACTGGTCAACCCTAGGA 59.024 52.381 11.48 0.00 34.29 2.94
166 167 2.028020 GTCAACTGGTCAACCCTAGGAG 60.028 54.545 11.48 2.69 34.29 3.69
167 168 0.984995 AACTGGTCAACCCTAGGAGC 59.015 55.000 11.48 0.00 34.29 4.70
168 169 1.258445 ACTGGTCAACCCTAGGAGCG 61.258 60.000 11.48 0.00 34.39 5.03
169 170 0.970937 CTGGTCAACCCTAGGAGCGA 60.971 60.000 11.48 0.00 34.39 4.93
170 171 1.255667 TGGTCAACCCTAGGAGCGAC 61.256 60.000 11.48 12.60 34.39 5.19
171 172 1.516423 GTCAACCCTAGGAGCGACC 59.484 63.158 11.48 0.00 39.35 4.79
172 173 2.050350 TCAACCCTAGGAGCGACCG 61.050 63.158 11.48 0.00 44.74 4.79
173 174 2.036890 AACCCTAGGAGCGACCGT 59.963 61.111 11.48 0.00 44.74 4.83
174 175 2.348888 AACCCTAGGAGCGACCGTG 61.349 63.158 11.48 0.00 44.74 4.94
175 176 2.439701 CCCTAGGAGCGACCGTGA 60.440 66.667 11.48 0.00 44.74 4.35
176 177 2.050350 CCCTAGGAGCGACCGTGAA 61.050 63.158 11.48 0.00 44.74 3.18
177 178 1.601419 CCCTAGGAGCGACCGTGAAA 61.601 60.000 11.48 0.00 44.74 2.69
178 179 0.458025 CCTAGGAGCGACCGTGAAAC 60.458 60.000 1.05 0.00 44.74 2.78
179 180 0.242825 CTAGGAGCGACCGTGAAACA 59.757 55.000 0.00 0.00 44.74 2.83
180 181 0.242825 TAGGAGCGACCGTGAAACAG 59.757 55.000 0.00 0.00 44.74 3.16
181 182 1.300697 GGAGCGACCGTGAAACAGT 60.301 57.895 0.00 0.00 35.74 3.55
182 183 0.878961 GGAGCGACCGTGAAACAGTT 60.879 55.000 0.00 0.00 35.74 3.16
183 184 0.935196 GAGCGACCGTGAAACAGTTT 59.065 50.000 0.00 0.00 35.74 2.66
184 185 0.935196 AGCGACCGTGAAACAGTTTC 59.065 50.000 17.85 17.85 40.08 2.78
185 186 0.935196 GCGACCGTGAAACAGTTTCT 59.065 50.000 23.57 6.42 40.32 2.52
186 187 2.129607 GCGACCGTGAAACAGTTTCTA 58.870 47.619 23.57 10.02 40.32 2.10
187 188 2.155155 GCGACCGTGAAACAGTTTCTAG 59.845 50.000 23.57 17.19 40.32 2.43
188 189 3.635331 CGACCGTGAAACAGTTTCTAGA 58.365 45.455 23.57 4.26 40.32 2.43
189 190 4.046462 CGACCGTGAAACAGTTTCTAGAA 58.954 43.478 23.57 0.00 40.32 2.10
190 191 4.085210 CGACCGTGAAACAGTTTCTAGAAC 60.085 45.833 23.57 13.85 40.32 3.01
191 192 3.800506 ACCGTGAAACAGTTTCTAGAACG 59.199 43.478 23.57 22.32 40.32 3.95
192 193 4.046462 CCGTGAAACAGTTTCTAGAACGA 58.954 43.478 26.37 6.94 37.46 3.85
193 194 4.148348 CCGTGAAACAGTTTCTAGAACGAG 59.852 45.833 26.37 17.29 37.46 4.18
194 195 4.375105 CGTGAAACAGTTTCTAGAACGAGC 60.375 45.833 22.82 0.00 37.46 5.03
195 196 4.506654 GTGAAACAGTTTCTAGAACGAGCA 59.493 41.667 23.57 0.80 40.32 4.26
196 197 4.745125 TGAAACAGTTTCTAGAACGAGCAG 59.255 41.667 23.57 0.00 40.32 4.24
197 198 2.678324 ACAGTTTCTAGAACGAGCAGC 58.322 47.619 4.18 0.00 0.00 5.25
198 199 7.554615 GAAACAGTTTCTAGAACGAGCAGCG 62.555 48.000 17.48 0.00 40.22 5.18
207 208 2.049156 CGAGCAGCGTGGTTCTGA 60.049 61.111 0.00 0.00 33.54 3.27
208 209 1.664649 CGAGCAGCGTGGTTCTGAA 60.665 57.895 0.00 0.00 33.54 3.02
209 210 1.221466 CGAGCAGCGTGGTTCTGAAA 61.221 55.000 0.00 0.00 33.54 2.69
210 211 0.235926 GAGCAGCGTGGTTCTGAAAC 59.764 55.000 0.00 0.00 33.54 2.78
211 212 0.463654 AGCAGCGTGGTTCTGAAACA 60.464 50.000 3.54 3.54 37.10 2.83
212 213 0.593128 GCAGCGTGGTTCTGAAACAT 59.407 50.000 11.84 0.00 37.10 2.71
213 214 1.001378 GCAGCGTGGTTCTGAAACATT 60.001 47.619 11.84 0.00 37.10 2.71
214 215 2.543653 GCAGCGTGGTTCTGAAACATTT 60.544 45.455 11.84 0.00 37.10 2.32
215 216 3.300009 CAGCGTGGTTCTGAAACATTTC 58.700 45.455 11.84 4.19 37.10 2.17
216 217 2.293399 AGCGTGGTTCTGAAACATTTCC 59.707 45.455 11.84 0.00 37.10 3.13
217 218 2.293399 GCGTGGTTCTGAAACATTTCCT 59.707 45.455 11.84 0.00 37.10 3.36
218 219 3.853307 GCGTGGTTCTGAAACATTTCCTG 60.853 47.826 11.84 0.00 37.10 3.86
219 220 3.304659 CGTGGTTCTGAAACATTTCCTGG 60.305 47.826 11.84 0.00 37.10 4.45
220 221 3.005791 GTGGTTCTGAAACATTTCCTGGG 59.994 47.826 11.84 0.00 37.10 4.45
221 222 2.029020 GGTTCTGAAACATTTCCTGGGC 60.029 50.000 0.00 0.00 37.10 5.36
222 223 1.923356 TCTGAAACATTTCCTGGGCC 58.077 50.000 0.00 0.00 36.36 5.80
223 224 1.146774 TCTGAAACATTTCCTGGGCCA 59.853 47.619 5.85 5.85 36.36 5.36
224 225 1.547372 CTGAAACATTTCCTGGGCCAG 59.453 52.381 27.04 27.04 36.36 4.85
225 226 0.247460 GAAACATTTCCTGGGCCAGC 59.753 55.000 28.51 7.15 0.00 4.85
226 227 1.194121 AAACATTTCCTGGGCCAGCC 61.194 55.000 28.51 0.00 0.00 4.85
227 228 2.097978 AACATTTCCTGGGCCAGCCT 62.098 55.000 28.51 8.71 36.10 4.58
228 229 1.214305 ACATTTCCTGGGCCAGCCTA 61.214 55.000 28.51 14.52 36.10 3.93
229 230 0.186873 CATTTCCTGGGCCAGCCTAT 59.813 55.000 28.51 16.12 36.10 2.57
230 231 1.425066 CATTTCCTGGGCCAGCCTATA 59.575 52.381 28.51 10.90 36.10 1.31
231 232 1.602440 TTTCCTGGGCCAGCCTATAA 58.398 50.000 28.51 12.83 36.10 0.98
232 233 1.140312 TTCCTGGGCCAGCCTATAAG 58.860 55.000 28.51 12.56 36.10 1.73
233 234 0.768221 TCCTGGGCCAGCCTATAAGG 60.768 60.000 28.51 12.98 38.80 2.69
242 243 2.279252 CCTATAAGGCGTGCGCGT 60.279 61.111 22.18 8.25 43.06 6.01
243 244 2.585869 CCTATAAGGCGTGCGCGTG 61.586 63.158 22.18 0.00 43.06 5.34
244 245 2.583868 TATAAGGCGTGCGCGTGG 60.584 61.111 22.18 0.00 43.06 4.94
245 246 2.947118 CTATAAGGCGTGCGCGTGGA 62.947 60.000 22.18 4.85 43.06 4.02
257 258 3.110178 CGTGGACGCCGTTTCTCC 61.110 66.667 0.00 0.00 0.00 3.71
258 259 2.342648 GTGGACGCCGTTTCTCCT 59.657 61.111 0.00 0.00 0.00 3.69
259 260 1.588082 GTGGACGCCGTTTCTCCTA 59.412 57.895 0.00 0.00 0.00 2.94
260 261 0.458025 GTGGACGCCGTTTCTCCTAG 60.458 60.000 0.00 0.00 0.00 3.02
261 262 1.518792 GGACGCCGTTTCTCCTAGC 60.519 63.158 0.00 0.00 0.00 3.42
262 263 1.511768 GACGCCGTTTCTCCTAGCT 59.488 57.895 0.00 0.00 0.00 3.32
263 264 0.802607 GACGCCGTTTCTCCTAGCTG 60.803 60.000 0.00 0.00 0.00 4.24
264 265 1.519455 CGCCGTTTCTCCTAGCTGG 60.519 63.158 0.00 0.00 37.10 4.85
265 266 1.815840 GCCGTTTCTCCTAGCTGGC 60.816 63.158 0.00 0.00 35.26 4.85
266 267 1.519455 CCGTTTCTCCTAGCTGGCG 60.519 63.158 0.00 0.00 35.26 5.69
267 268 2.167861 CGTTTCTCCTAGCTGGCGC 61.168 63.158 0.00 0.00 35.26 6.53
269 270 0.391793 GTTTCTCCTAGCTGGCGCTT 60.392 55.000 7.64 0.00 46.47 4.68
270 271 1.134788 GTTTCTCCTAGCTGGCGCTTA 60.135 52.381 7.64 0.00 46.47 3.09
271 272 1.191535 TTCTCCTAGCTGGCGCTTAA 58.808 50.000 7.64 0.00 46.47 1.85
272 273 0.747255 TCTCCTAGCTGGCGCTTAAG 59.253 55.000 7.64 3.97 46.47 1.85
273 274 0.747255 CTCCTAGCTGGCGCTTAAGA 59.253 55.000 7.64 4.10 46.47 2.10
274 275 0.460311 TCCTAGCTGGCGCTTAAGAC 59.540 55.000 7.64 0.00 46.47 3.01
275 276 0.872021 CCTAGCTGGCGCTTAAGACG 60.872 60.000 7.64 10.56 46.47 4.18
283 284 2.856089 CGCTTAAGACGCGGACTAG 58.144 57.895 12.47 6.06 46.32 2.57
284 285 0.376152 CGCTTAAGACGCGGACTAGA 59.624 55.000 12.47 0.00 46.32 2.43
285 286 1.202110 CGCTTAAGACGCGGACTAGAA 60.202 52.381 12.47 6.83 46.32 2.10
286 287 2.452105 GCTTAAGACGCGGACTAGAAG 58.548 52.381 12.47 15.91 0.00 2.85
287 288 2.795331 GCTTAAGACGCGGACTAGAAGG 60.795 54.545 12.47 1.35 0.00 3.46
288 289 0.737219 TAAGACGCGGACTAGAAGGC 59.263 55.000 12.47 0.00 0.00 4.35
289 290 1.946475 AAGACGCGGACTAGAAGGCC 61.946 60.000 12.47 0.00 41.17 5.19
290 291 3.427598 GACGCGGACTAGAAGGCCC 62.428 68.421 12.47 0.00 41.74 5.80
291 292 3.148279 CGCGGACTAGAAGGCCCT 61.148 66.667 0.00 0.00 41.74 5.19
292 293 2.722201 CGCGGACTAGAAGGCCCTT 61.722 63.158 0.00 0.00 41.74 3.95
293 294 1.389609 CGCGGACTAGAAGGCCCTTA 61.390 60.000 0.00 0.00 41.74 2.69
294 295 0.104487 GCGGACTAGAAGGCCCTTAC 59.896 60.000 0.00 0.00 41.74 2.34
295 296 0.384669 CGGACTAGAAGGCCCTTACG 59.615 60.000 0.00 0.00 41.74 3.18
296 297 1.772836 GGACTAGAAGGCCCTTACGA 58.227 55.000 0.00 0.00 37.46 3.43
297 298 2.105766 GGACTAGAAGGCCCTTACGAA 58.894 52.381 0.00 0.00 37.46 3.85
298 299 2.159128 GGACTAGAAGGCCCTTACGAAC 60.159 54.545 0.00 0.00 37.46 3.95
299 300 2.494870 GACTAGAAGGCCCTTACGAACA 59.505 50.000 0.00 0.00 0.00 3.18
300 301 3.105283 ACTAGAAGGCCCTTACGAACAT 58.895 45.455 0.00 0.00 0.00 2.71
301 302 2.403252 AGAAGGCCCTTACGAACATG 57.597 50.000 0.00 0.00 0.00 3.21
302 303 1.065418 AGAAGGCCCTTACGAACATGG 60.065 52.381 0.00 0.00 0.00 3.66
303 304 0.034477 AAGGCCCTTACGAACATGGG 60.034 55.000 0.00 0.00 42.41 4.00
304 305 1.205460 AGGCCCTTACGAACATGGGT 61.205 55.000 0.00 0.00 41.59 4.51
305 306 1.029947 GGCCCTTACGAACATGGGTG 61.030 60.000 0.00 0.00 41.59 4.61
306 307 0.035820 GCCCTTACGAACATGGGTGA 60.036 55.000 0.00 0.00 41.59 4.02
307 308 2.012051 GCCCTTACGAACATGGGTGAG 61.012 57.143 0.00 0.00 41.59 3.51
308 309 1.553248 CCCTTACGAACATGGGTGAGA 59.447 52.381 0.00 0.00 35.13 3.27
309 310 2.418746 CCCTTACGAACATGGGTGAGAG 60.419 54.545 0.00 0.00 35.13 3.20
310 311 2.496070 CCTTACGAACATGGGTGAGAGA 59.504 50.000 0.00 0.00 0.00 3.10
311 312 3.512680 CTTACGAACATGGGTGAGAGAC 58.487 50.000 0.00 0.00 0.00 3.36
312 313 0.243907 ACGAACATGGGTGAGAGACG 59.756 55.000 0.00 0.00 0.00 4.18
313 314 0.526211 CGAACATGGGTGAGAGACGA 59.474 55.000 0.00 0.00 0.00 4.20
314 315 1.732732 CGAACATGGGTGAGAGACGAC 60.733 57.143 0.00 0.00 0.00 4.34
315 316 1.272490 GAACATGGGTGAGAGACGACA 59.728 52.381 0.00 0.00 0.00 4.35
316 317 0.891373 ACATGGGTGAGAGACGACAG 59.109 55.000 0.00 0.00 0.00 3.51
317 318 1.177401 CATGGGTGAGAGACGACAGA 58.823 55.000 0.00 0.00 0.00 3.41
318 319 1.135257 CATGGGTGAGAGACGACAGAC 60.135 57.143 0.00 0.00 0.00 3.51
319 320 0.179001 TGGGTGAGAGACGACAGACA 60.179 55.000 0.00 0.00 0.00 3.41
320 321 1.178276 GGGTGAGAGACGACAGACAT 58.822 55.000 0.00 0.00 0.00 3.06
321 322 1.135257 GGGTGAGAGACGACAGACATG 60.135 57.143 0.00 0.00 0.00 3.21
322 323 1.542030 GGTGAGAGACGACAGACATGT 59.458 52.381 0.00 0.00 44.31 3.21
323 324 2.590073 GTGAGAGACGACAGACATGTG 58.410 52.381 1.15 0.00 40.68 3.21
324 325 2.226674 GTGAGAGACGACAGACATGTGA 59.773 50.000 1.15 0.00 40.68 3.58
325 326 2.226674 TGAGAGACGACAGACATGTGAC 59.773 50.000 1.15 0.00 40.68 3.67
326 327 1.197949 AGAGACGACAGACATGTGACG 59.802 52.381 1.15 4.76 40.68 4.35
328 329 1.053048 GACGACAGACATGTGACGTG 58.947 55.000 15.96 2.72 46.27 4.49
329 330 0.939577 ACGACAGACATGTGACGTGC 60.940 55.000 1.15 0.00 44.96 5.34
330 331 1.775344 GACAGACATGTGACGTGCG 59.225 57.895 1.15 0.00 40.68 5.34
331 332 0.939577 GACAGACATGTGACGTGCGT 60.940 55.000 1.15 0.00 40.68 5.24
332 333 1.215014 ACAGACATGTGACGTGCGTG 61.215 55.000 1.15 5.15 38.57 5.34
333 334 2.170985 GACATGTGACGTGCGTGC 59.829 61.111 1.15 0.00 0.00 5.34
334 335 2.587473 ACATGTGACGTGCGTGCA 60.587 55.556 4.41 1.61 0.00 4.57
335 336 2.100024 GACATGTGACGTGCGTGCAA 62.100 55.000 1.15 0.00 0.00 4.08
336 337 1.722163 CATGTGACGTGCGTGCAAC 60.722 57.895 0.67 0.00 0.00 4.17
337 338 1.887242 ATGTGACGTGCGTGCAACT 60.887 52.632 0.67 0.00 31.75 3.16
338 339 1.436195 ATGTGACGTGCGTGCAACTT 61.436 50.000 0.67 0.00 31.75 2.66
339 340 1.651132 GTGACGTGCGTGCAACTTG 60.651 57.895 0.67 0.00 31.75 3.16
340 341 2.052237 GACGTGCGTGCAACTTGG 60.052 61.111 0.67 0.00 31.75 3.61
341 342 2.819552 GACGTGCGTGCAACTTGGT 61.820 57.895 0.67 0.00 31.75 3.67
342 343 2.317685 GACGTGCGTGCAACTTGGTT 62.318 55.000 0.67 0.00 31.75 3.67
343 344 1.938814 CGTGCGTGCAACTTGGTTG 60.939 57.895 0.00 6.10 45.24 3.77
344 345 1.588667 GTGCGTGCAACTTGGTTGG 60.589 57.895 11.55 0.00 42.99 3.77
345 346 2.027460 GCGTGCAACTTGGTTGGG 59.973 61.111 11.55 0.00 42.99 4.12
346 347 2.027460 CGTGCAACTTGGTTGGGC 59.973 61.111 11.55 0.25 42.99 5.36
347 348 2.421314 GTGCAACTTGGTTGGGCC 59.579 61.111 11.55 0.00 42.99 5.80
348 349 3.222855 TGCAACTTGGTTGGGCCG 61.223 61.111 11.55 0.00 42.99 6.13
349 350 3.989787 GCAACTTGGTTGGGCCGG 61.990 66.667 11.55 0.00 42.99 6.13
350 351 2.520741 CAACTTGGTTGGGCCGGT 60.521 61.111 1.90 0.00 39.56 5.28
351 352 2.131067 CAACTTGGTTGGGCCGGTT 61.131 57.895 1.90 0.00 39.56 4.44
352 353 2.131067 AACTTGGTTGGGCCGGTTG 61.131 57.895 1.90 0.00 41.21 3.77
353 354 3.989787 CTTGGTTGGGCCGGTTGC 61.990 66.667 1.90 0.00 41.21 4.17
354 355 4.841617 TTGGTTGGGCCGGTTGCA 62.842 61.111 1.90 0.00 43.89 4.08
355 356 4.841617 TGGTTGGGCCGGTTGCAA 62.842 61.111 1.90 0.00 43.89 4.08
356 357 4.293648 GGTTGGGCCGGTTGCAAC 62.294 66.667 21.59 21.59 43.89 4.17
357 358 3.532155 GTTGGGCCGGTTGCAACA 61.532 61.111 29.55 6.49 43.89 3.33
358 359 2.759973 TTGGGCCGGTTGCAACAA 60.760 55.556 29.55 12.41 43.89 2.83
359 360 2.359169 TTGGGCCGGTTGCAACAAA 61.359 52.632 29.55 11.44 43.89 2.83
360 361 1.899437 TTGGGCCGGTTGCAACAAAA 61.899 50.000 29.55 11.77 43.89 2.44
361 362 1.594021 GGGCCGGTTGCAACAAAAG 60.594 57.895 29.55 17.01 43.89 2.27
362 363 2.243957 GGCCGGTTGCAACAAAAGC 61.244 57.895 29.55 23.26 43.89 3.51
363 364 2.243957 GCCGGTTGCAACAAAAGCC 61.244 57.895 29.55 11.45 40.77 4.35
364 365 1.441311 CCGGTTGCAACAAAAGCCT 59.559 52.632 29.55 0.00 0.00 4.58
365 366 0.671251 CCGGTTGCAACAAAAGCCTA 59.329 50.000 29.55 0.00 0.00 3.93
366 367 1.335872 CCGGTTGCAACAAAAGCCTAG 60.336 52.381 29.55 9.40 0.00 3.02
367 368 1.336755 CGGTTGCAACAAAAGCCTAGT 59.663 47.619 29.55 0.00 0.00 2.57
368 369 2.223711 CGGTTGCAACAAAAGCCTAGTT 60.224 45.455 29.55 0.00 0.00 2.24
369 370 3.003897 CGGTTGCAACAAAAGCCTAGTTA 59.996 43.478 29.55 0.00 0.00 2.24
370 371 4.295870 GGTTGCAACAAAAGCCTAGTTAC 58.704 43.478 29.55 4.54 0.00 2.50
371 372 4.202070 GGTTGCAACAAAAGCCTAGTTACA 60.202 41.667 29.55 0.00 0.00 2.41
372 373 5.344884 GTTGCAACAAAAGCCTAGTTACAA 58.655 37.500 24.52 0.00 0.00 2.41
373 374 5.181690 TGCAACAAAAGCCTAGTTACAAG 57.818 39.130 0.00 0.00 0.00 3.16
374 375 4.884744 TGCAACAAAAGCCTAGTTACAAGA 59.115 37.500 0.00 0.00 0.00 3.02
375 376 5.212934 GCAACAAAAGCCTAGTTACAAGAC 58.787 41.667 0.00 0.00 0.00 3.01
376 377 5.440685 CAACAAAAGCCTAGTTACAAGACG 58.559 41.667 0.00 0.00 0.00 4.18
377 378 4.700700 ACAAAAGCCTAGTTACAAGACGT 58.299 39.130 0.00 0.00 0.00 4.34
378 379 5.121105 ACAAAAGCCTAGTTACAAGACGTT 58.879 37.500 0.00 0.00 0.00 3.99
379 380 5.235831 ACAAAAGCCTAGTTACAAGACGTTC 59.764 40.000 0.00 0.00 0.00 3.95
380 381 4.868314 AAGCCTAGTTACAAGACGTTCT 57.132 40.909 0.00 0.00 0.00 3.01
381 382 4.175787 AGCCTAGTTACAAGACGTTCTG 57.824 45.455 0.00 0.00 0.00 3.02
382 383 3.825014 AGCCTAGTTACAAGACGTTCTGA 59.175 43.478 4.97 0.00 0.00 3.27
383 384 4.280174 AGCCTAGTTACAAGACGTTCTGAA 59.720 41.667 4.97 0.00 0.00 3.02
384 385 4.986659 GCCTAGTTACAAGACGTTCTGAAA 59.013 41.667 4.97 0.00 0.00 2.69
385 386 5.107568 GCCTAGTTACAAGACGTTCTGAAAC 60.108 44.000 4.97 1.25 0.00 2.78
386 387 5.981315 CCTAGTTACAAGACGTTCTGAAACA 59.019 40.000 4.97 0.00 34.93 2.83
387 388 6.477688 CCTAGTTACAAGACGTTCTGAAACAA 59.522 38.462 4.97 0.00 34.93 2.83
388 389 6.920569 AGTTACAAGACGTTCTGAAACAAT 57.079 33.333 4.97 0.00 34.93 2.71
389 390 6.715464 AGTTACAAGACGTTCTGAAACAATG 58.285 36.000 4.97 0.00 34.93 2.82
390 391 6.537301 AGTTACAAGACGTTCTGAAACAATGA 59.463 34.615 4.97 0.00 34.93 2.57
391 392 5.811399 ACAAGACGTTCTGAAACAATGAA 57.189 34.783 4.97 0.00 34.93 2.57
392 393 5.569413 ACAAGACGTTCTGAAACAATGAAC 58.431 37.500 4.97 0.00 37.36 3.18
393 394 5.354234 ACAAGACGTTCTGAAACAATGAACT 59.646 36.000 4.97 0.00 38.23 3.01
394 395 5.659048 AGACGTTCTGAAACAATGAACTC 57.341 39.130 0.00 0.00 38.23 3.01
395 396 5.360591 AGACGTTCTGAAACAATGAACTCT 58.639 37.500 0.00 0.00 38.23 3.24
396 397 5.817816 AGACGTTCTGAAACAATGAACTCTT 59.182 36.000 0.00 0.00 38.23 2.85
397 398 6.316390 AGACGTTCTGAAACAATGAACTCTTT 59.684 34.615 0.00 0.00 38.23 2.52
398 399 6.852664 ACGTTCTGAAACAATGAACTCTTTT 58.147 32.000 0.00 0.00 38.23 2.27
399 400 7.312899 ACGTTCTGAAACAATGAACTCTTTTT 58.687 30.769 0.00 0.00 38.23 1.94
400 401 7.273381 ACGTTCTGAAACAATGAACTCTTTTTG 59.727 33.333 0.00 0.00 38.23 2.44
401 402 7.484641 CGTTCTGAAACAATGAACTCTTTTTGA 59.515 33.333 0.00 0.00 38.23 2.69
402 403 8.801913 GTTCTGAAACAATGAACTCTTTTTGAG 58.198 33.333 0.00 0.00 40.60 3.02
403 404 7.483307 TCTGAAACAATGAACTCTTTTTGAGG 58.517 34.615 0.00 0.00 46.72 3.86
404 405 6.572519 TGAAACAATGAACTCTTTTTGAGGG 58.427 36.000 0.00 0.00 46.72 4.30
405 406 5.535753 AACAATGAACTCTTTTTGAGGGG 57.464 39.130 0.00 0.00 46.72 4.79
406 407 4.546674 ACAATGAACTCTTTTTGAGGGGT 58.453 39.130 0.00 0.00 46.72 4.95
407 408 5.701224 ACAATGAACTCTTTTTGAGGGGTA 58.299 37.500 0.00 0.00 46.72 3.69
408 409 6.133356 ACAATGAACTCTTTTTGAGGGGTAA 58.867 36.000 0.00 0.00 46.72 2.85
409 410 6.609616 ACAATGAACTCTTTTTGAGGGGTAAA 59.390 34.615 0.00 0.00 46.72 2.01
410 411 6.901081 ATGAACTCTTTTTGAGGGGTAAAG 57.099 37.500 0.00 0.00 46.72 1.85
411 412 4.583073 TGAACTCTTTTTGAGGGGTAAAGC 59.417 41.667 0.00 0.00 46.72 3.51
412 413 4.178956 ACTCTTTTTGAGGGGTAAAGCA 57.821 40.909 0.00 0.00 46.72 3.91
413 414 4.740902 ACTCTTTTTGAGGGGTAAAGCAT 58.259 39.130 0.00 0.00 46.72 3.79
414 415 5.147767 ACTCTTTTTGAGGGGTAAAGCATT 58.852 37.500 0.00 0.00 46.72 3.56
415 416 5.602561 ACTCTTTTTGAGGGGTAAAGCATTT 59.397 36.000 0.00 0.00 46.72 2.32
416 417 6.780522 ACTCTTTTTGAGGGGTAAAGCATTTA 59.219 34.615 0.00 0.00 46.72 1.40
417 418 7.454694 ACTCTTTTTGAGGGGTAAAGCATTTAT 59.545 33.333 0.00 0.00 43.77 1.40
418 419 8.201242 TCTTTTTGAGGGGTAAAGCATTTATT 57.799 30.769 0.00 0.00 43.30 1.40
419 420 8.311109 TCTTTTTGAGGGGTAAAGCATTTATTC 58.689 33.333 0.00 0.00 43.30 1.75
420 421 7.546250 TTTTGAGGGGTAAAGCATTTATTCA 57.454 32.000 0.00 0.00 43.30 2.57
421 422 7.546250 TTTGAGGGGTAAAGCATTTATTCAA 57.454 32.000 0.00 0.00 43.30 2.69
422 423 7.732222 TTGAGGGGTAAAGCATTTATTCAAT 57.268 32.000 0.00 0.00 43.30 2.57
423 424 8.830915 TTGAGGGGTAAAGCATTTATTCAATA 57.169 30.769 0.00 0.00 43.30 1.90
424 425 8.830915 TGAGGGGTAAAGCATTTATTCAATAA 57.169 30.769 0.00 0.00 43.30 1.40
425 426 9.261035 TGAGGGGTAAAGCATTTATTCAATAAA 57.739 29.630 5.03 5.03 43.30 1.40
442 443 9.829507 ATTCAATAAAAGAAACAAATGTCCACA 57.170 25.926 0.00 0.00 0.00 4.17
443 444 9.658799 TTCAATAAAAGAAACAAATGTCCACAA 57.341 25.926 0.00 0.00 0.00 3.33
444 445 9.311916 TCAATAAAAGAAACAAATGTCCACAAG 57.688 29.630 0.00 0.00 0.00 3.16
445 446 9.097257 CAATAAAAGAAACAAATGTCCACAAGT 57.903 29.630 0.00 0.00 0.00 3.16
446 447 9.665719 AATAAAAGAAACAAATGTCCACAAGTT 57.334 25.926 0.00 0.00 0.00 2.66
447 448 7.595311 AAAAGAAACAAATGTCCACAAGTTC 57.405 32.000 0.00 0.00 0.00 3.01
448 449 5.262588 AGAAACAAATGTCCACAAGTTCC 57.737 39.130 0.00 0.00 0.00 3.62
449 450 4.099419 AGAAACAAATGTCCACAAGTTCCC 59.901 41.667 0.00 0.00 0.00 3.97
450 451 3.025322 ACAAATGTCCACAAGTTCCCA 57.975 42.857 0.00 0.00 0.00 4.37
451 452 3.370104 ACAAATGTCCACAAGTTCCCAA 58.630 40.909 0.00 0.00 0.00 4.12
452 453 3.966665 ACAAATGTCCACAAGTTCCCAAT 59.033 39.130 0.00 0.00 0.00 3.16
453 454 4.408596 ACAAATGTCCACAAGTTCCCAATT 59.591 37.500 0.00 0.00 0.00 2.32
454 455 4.871933 AATGTCCACAAGTTCCCAATTC 57.128 40.909 0.00 0.00 0.00 2.17
455 456 3.304911 TGTCCACAAGTTCCCAATTCA 57.695 42.857 0.00 0.00 0.00 2.57
456 457 3.843422 TGTCCACAAGTTCCCAATTCAT 58.157 40.909 0.00 0.00 0.00 2.57
457 458 3.573538 TGTCCACAAGTTCCCAATTCATG 59.426 43.478 0.00 0.00 0.00 3.07
458 459 3.826157 GTCCACAAGTTCCCAATTCATGA 59.174 43.478 0.00 0.00 0.00 3.07
459 460 4.280677 GTCCACAAGTTCCCAATTCATGAA 59.719 41.667 11.26 11.26 0.00 2.57
460 461 4.898265 TCCACAAGTTCCCAATTCATGAAA 59.102 37.500 13.09 0.00 0.00 2.69
461 462 5.010922 TCCACAAGTTCCCAATTCATGAAAG 59.989 40.000 13.09 8.19 0.00 2.62
462 463 4.687483 CACAAGTTCCCAATTCATGAAAGC 59.313 41.667 13.09 0.00 0.00 3.51
463 464 4.344679 ACAAGTTCCCAATTCATGAAAGCA 59.655 37.500 13.09 0.00 0.00 3.91
464 465 4.796038 AGTTCCCAATTCATGAAAGCAG 57.204 40.909 13.09 2.53 0.00 4.24
465 466 4.154942 AGTTCCCAATTCATGAAAGCAGT 58.845 39.130 13.09 0.00 0.00 4.40
466 467 4.219288 AGTTCCCAATTCATGAAAGCAGTC 59.781 41.667 13.09 1.49 0.00 3.51
467 468 4.038271 TCCCAATTCATGAAAGCAGTCT 57.962 40.909 13.09 0.00 0.00 3.24
468 469 4.012374 TCCCAATTCATGAAAGCAGTCTC 58.988 43.478 13.09 0.00 0.00 3.36
469 470 3.181503 CCCAATTCATGAAAGCAGTCTCG 60.182 47.826 13.09 0.00 0.00 4.04
470 471 3.423571 CAATTCATGAAAGCAGTCTCGC 58.576 45.455 13.09 0.00 0.00 5.03
471 472 1.442769 TTCATGAAAGCAGTCTCGCC 58.557 50.000 5.45 0.00 0.00 5.54
472 473 0.610174 TCATGAAAGCAGTCTCGCCT 59.390 50.000 0.00 0.00 0.00 5.52
473 474 0.725686 CATGAAAGCAGTCTCGCCTG 59.274 55.000 0.00 0.00 35.49 4.85
479 480 2.659016 CAGTCTCGCCTGCTCCAA 59.341 61.111 0.00 0.00 0.00 3.53
480 481 1.004560 CAGTCTCGCCTGCTCCAAA 60.005 57.895 0.00 0.00 0.00 3.28
481 482 1.004440 AGTCTCGCCTGCTCCAAAC 60.004 57.895 0.00 0.00 0.00 2.93
482 483 1.004440 GTCTCGCCTGCTCCAAACT 60.004 57.895 0.00 0.00 0.00 2.66
483 484 0.603975 GTCTCGCCTGCTCCAAACTT 60.604 55.000 0.00 0.00 0.00 2.66
484 485 0.973632 TCTCGCCTGCTCCAAACTTA 59.026 50.000 0.00 0.00 0.00 2.24
485 486 1.346395 TCTCGCCTGCTCCAAACTTAA 59.654 47.619 0.00 0.00 0.00 1.85
486 487 2.151202 CTCGCCTGCTCCAAACTTAAA 58.849 47.619 0.00 0.00 0.00 1.52
487 488 2.552315 CTCGCCTGCTCCAAACTTAAAA 59.448 45.455 0.00 0.00 0.00 1.52
488 489 2.952978 TCGCCTGCTCCAAACTTAAAAA 59.047 40.909 0.00 0.00 0.00 1.94
512 513 9.508642 AAAACTTAAACAAAACCCAAAATCTCA 57.491 25.926 0.00 0.00 0.00 3.27
513 514 9.679661 AAACTTAAACAAAACCCAAAATCTCAT 57.320 25.926 0.00 0.00 0.00 2.90
514 515 8.887036 ACTTAAACAAAACCCAAAATCTCATC 57.113 30.769 0.00 0.00 0.00 2.92
515 516 8.704668 ACTTAAACAAAACCCAAAATCTCATCT 58.295 29.630 0.00 0.00 0.00 2.90
516 517 8.885494 TTAAACAAAACCCAAAATCTCATCTG 57.115 30.769 0.00 0.00 0.00 2.90
517 518 4.886579 ACAAAACCCAAAATCTCATCTGC 58.113 39.130 0.00 0.00 0.00 4.26
518 519 4.344679 ACAAAACCCAAAATCTCATCTGCA 59.655 37.500 0.00 0.00 0.00 4.41
519 520 5.163322 ACAAAACCCAAAATCTCATCTGCAA 60.163 36.000 0.00 0.00 0.00 4.08
520 521 4.525912 AACCCAAAATCTCATCTGCAAC 57.474 40.909 0.00 0.00 0.00 4.17
521 522 3.499338 ACCCAAAATCTCATCTGCAACA 58.501 40.909 0.00 0.00 0.00 3.33
522 523 3.896888 ACCCAAAATCTCATCTGCAACAA 59.103 39.130 0.00 0.00 0.00 2.83
523 524 4.529377 ACCCAAAATCTCATCTGCAACAAT 59.471 37.500 0.00 0.00 0.00 2.71
524 525 5.107133 CCCAAAATCTCATCTGCAACAATC 58.893 41.667 0.00 0.00 0.00 2.67
525 526 5.105473 CCCAAAATCTCATCTGCAACAATCT 60.105 40.000 0.00 0.00 0.00 2.40
526 527 5.805486 CCAAAATCTCATCTGCAACAATCTG 59.195 40.000 0.00 0.00 0.00 2.90
527 528 4.634184 AATCTCATCTGCAACAATCTGC 57.366 40.909 0.00 0.00 42.95 4.26
534 535 3.911989 GCAACAATCTGCAGGATCG 57.088 52.632 15.13 2.81 42.17 3.69
535 536 1.372582 GCAACAATCTGCAGGATCGA 58.627 50.000 15.13 0.00 42.17 3.59
536 537 1.739466 GCAACAATCTGCAGGATCGAA 59.261 47.619 15.13 0.00 42.17 3.71
537 538 2.357009 GCAACAATCTGCAGGATCGAAT 59.643 45.455 15.13 0.00 42.17 3.34
538 539 3.547613 GCAACAATCTGCAGGATCGAATC 60.548 47.826 15.13 0.00 42.17 2.52
539 540 3.834489 ACAATCTGCAGGATCGAATCT 57.166 42.857 15.13 0.00 32.76 2.40
540 541 3.464907 ACAATCTGCAGGATCGAATCTG 58.535 45.455 15.13 12.33 32.76 2.90
541 542 2.806818 CAATCTGCAGGATCGAATCTGG 59.193 50.000 15.13 5.00 32.76 3.86
542 543 1.489481 TCTGCAGGATCGAATCTGGT 58.511 50.000 15.13 0.00 0.00 4.00
543 544 1.137675 TCTGCAGGATCGAATCTGGTG 59.862 52.381 15.13 0.00 0.00 4.17
544 545 0.178767 TGCAGGATCGAATCTGGTGG 59.821 55.000 16.61 0.00 0.00 4.61
545 546 1.162800 GCAGGATCGAATCTGGTGGC 61.163 60.000 16.61 2.76 0.00 5.01
546 547 0.467384 CAGGATCGAATCTGGTGGCT 59.533 55.000 9.66 0.00 0.00 4.75
547 548 0.467384 AGGATCGAATCTGGTGGCTG 59.533 55.000 0.00 0.00 0.00 4.85
548 549 0.465705 GGATCGAATCTGGTGGCTGA 59.534 55.000 0.00 0.00 0.00 4.26
549 550 1.539929 GGATCGAATCTGGTGGCTGAG 60.540 57.143 0.00 0.00 0.00 3.35
550 551 1.410517 GATCGAATCTGGTGGCTGAGA 59.589 52.381 0.00 0.00 0.00 3.27
551 552 1.266178 TCGAATCTGGTGGCTGAGAA 58.734 50.000 0.00 0.00 0.00 2.87
552 553 1.205655 TCGAATCTGGTGGCTGAGAAG 59.794 52.381 0.00 0.00 0.00 2.85
553 554 1.741732 CGAATCTGGTGGCTGAGAAGG 60.742 57.143 0.00 0.00 0.00 3.46
554 555 0.034670 AATCTGGTGGCTGAGAAGGC 60.035 55.000 0.00 0.00 0.00 4.35
572 573 2.930950 GGCCACACCTTATTCATAGCA 58.069 47.619 0.00 0.00 34.51 3.49
573 574 3.287222 GGCCACACCTTATTCATAGCAA 58.713 45.455 0.00 0.00 34.51 3.91
574 575 3.891366 GGCCACACCTTATTCATAGCAAT 59.109 43.478 0.00 0.00 34.51 3.56
575 576 4.261741 GGCCACACCTTATTCATAGCAATG 60.262 45.833 0.00 0.00 34.51 2.82
576 577 4.794003 GCCACACCTTATTCATAGCAATGC 60.794 45.833 0.00 0.00 32.76 3.56
577 578 4.581824 CCACACCTTATTCATAGCAATGCT 59.418 41.667 13.92 13.92 43.41 3.79
578 579 5.764686 CCACACCTTATTCATAGCAATGCTA 59.235 40.000 17.97 17.97 45.55 3.49
579 580 6.262944 CCACACCTTATTCATAGCAATGCTAA 59.737 38.462 19.55 5.14 44.62 3.09
590 591 4.445452 AGCAATGCTAACAGAAATGTGG 57.555 40.909 5.69 0.00 36.99 4.17
602 603 6.764308 ACAGAAATGTGGAATATGTGAAGG 57.236 37.500 0.00 0.00 0.00 3.46
614 615 2.743636 TGTGAAGGTTGGATCTCGAC 57.256 50.000 0.00 0.00 0.00 4.20
638 639 4.235079 TCCAACAAAGAATCCATCCGAT 57.765 40.909 0.00 0.00 0.00 4.18
669 670 3.271729 GCTCATCTAGGATCGATCGGTA 58.728 50.000 18.81 11.76 0.00 4.02
671 672 4.760878 CTCATCTAGGATCGATCGGTAGA 58.239 47.826 26.23 26.23 31.60 2.59
699 700 2.351738 GCATTTCCGGGAAGAGTTTGTG 60.352 50.000 9.80 0.00 0.00 3.33
759 763 4.032104 CCGTAGTACCATTTTCGTAAGTGC 59.968 45.833 0.00 0.00 39.48 4.40
805 809 3.207474 CATCAGGTGCTTCTTTTTCGG 57.793 47.619 0.00 0.00 0.00 4.30
808 812 1.081442 GGTGCTTCTTTTTCGGCGG 60.081 57.895 7.21 0.00 0.00 6.13
843 847 2.351455 TGAATCAATCGCTGGCGTTTA 58.649 42.857 14.55 0.00 40.74 2.01
849 853 5.298197 TCAATCGCTGGCGTTTATTTTTA 57.702 34.783 14.55 0.00 40.74 1.52
850 854 5.700846 TCAATCGCTGGCGTTTATTTTTAA 58.299 33.333 14.55 0.00 40.74 1.52
950 956 2.546321 CAAGCGTCACGTGAGCAC 59.454 61.111 29.03 18.78 0.00 4.40
978 986 0.179108 ATTAAGCGTCGTCTCCTGGC 60.179 55.000 0.00 0.00 0.00 4.85
1139 1147 4.636435 CCACCACGTCCCCCACAC 62.636 72.222 0.00 0.00 0.00 3.82
1140 1148 4.636435 CACCACGTCCCCCACACC 62.636 72.222 0.00 0.00 0.00 4.16
1143 1151 4.636435 CACGTCCCCCACACCCAC 62.636 72.222 0.00 0.00 0.00 4.61
1145 1153 4.636435 CGTCCCCCACACCCACAC 62.636 72.222 0.00 0.00 0.00 3.82
1146 1154 4.280019 GTCCCCCACACCCACACC 62.280 72.222 0.00 0.00 0.00 4.16
1147 1155 4.525028 TCCCCCACACCCACACCT 62.525 66.667 0.00 0.00 0.00 4.00
1148 1156 4.284550 CCCCCACACCCACACCTG 62.285 72.222 0.00 0.00 0.00 4.00
1149 1157 4.974721 CCCCACACCCACACCTGC 62.975 72.222 0.00 0.00 0.00 4.85
1150 1158 4.974721 CCCACACCCACACCTGCC 62.975 72.222 0.00 0.00 0.00 4.85
1151 1159 4.202574 CCACACCCACACCTGCCA 62.203 66.667 0.00 0.00 0.00 4.92
1152 1160 2.906897 CACACCCACACCTGCCAC 60.907 66.667 0.00 0.00 0.00 5.01
1153 1161 4.204028 ACACCCACACCTGCCACC 62.204 66.667 0.00 0.00 0.00 4.61
1154 1162 4.202574 CACCCACACCTGCCACCA 62.203 66.667 0.00 0.00 0.00 4.17
1155 1163 4.204028 ACCCACACCTGCCACCAC 62.204 66.667 0.00 0.00 0.00 4.16
1244 1255 3.382832 CGAGACCCCAGCCGAGTT 61.383 66.667 0.00 0.00 0.00 3.01
1245 1256 2.579738 GAGACCCCAGCCGAGTTC 59.420 66.667 0.00 0.00 0.00 3.01
1343 1354 0.035458 AAGAAGAAGGAGCACACGGG 59.965 55.000 0.00 0.00 0.00 5.28
1492 1503 1.152440 ATCGAAGGGGAGATCGGCT 60.152 57.895 0.00 0.00 39.45 5.52
1512 1523 4.090588 TTCCCTTACCAGCGGCGG 62.091 66.667 9.78 8.89 0.00 6.13
1597 1608 0.398318 AACCTGTGAACAGCCTCCTC 59.602 55.000 4.87 0.00 42.47 3.71
1663 1679 2.166459 TGGATACGTTGCCTTCTGAGAG 59.834 50.000 0.00 0.00 42.51 3.20
1682 1698 9.631257 TCTGAGAGAAATTTTATGCCATTATCA 57.369 29.630 0.00 0.00 0.00 2.15
1784 1803 7.931407 AGAAAAGTCAATTGGGACCAAAAATAC 59.069 33.333 8.00 4.80 39.55 1.89
1793 1812 5.244755 TGGGACCAAAAATACCGTACTAAC 58.755 41.667 0.00 0.00 0.00 2.34
1821 1840 9.680315 GTTATTTAGAGTAATGATACGCTCAGT 57.320 33.333 0.00 0.00 40.72 3.41
1955 1974 4.825085 AGAAGAAAATCACGTAAAAGCCCA 59.175 37.500 0.00 0.00 0.00 5.36
1962 1981 4.289238 TCACGTAAAAGCCCATAAAGGA 57.711 40.909 0.00 0.00 41.22 3.36
2094 2116 7.989416 ACCGAAAAATCATACCTCAAAAGTA 57.011 32.000 0.00 0.00 0.00 2.24
2136 2453 0.738389 AAAAGGTGTGTGCCAGTTCG 59.262 50.000 0.00 0.00 0.00 3.95
2196 2513 1.760613 TGGGGGATGTATTCGAGTCAC 59.239 52.381 0.00 0.00 0.00 3.67
2225 2542 1.420138 ACCGAGTGGATTGAACCTGTT 59.580 47.619 0.00 0.00 39.21 3.16
2311 2628 1.467374 CCTAATTTTGCTCAACCCGCG 60.467 52.381 0.00 0.00 0.00 6.46
2314 2631 4.947147 TTTGCTCAACCCGCGCCT 62.947 61.111 0.00 0.00 0.00 5.52
2360 2680 5.882557 GTCCATCACAATCCACTATGAAACT 59.117 40.000 0.00 0.00 0.00 2.66
2377 2697 3.975168 AACTATGTAAAGACCCGCACT 57.025 42.857 0.00 0.00 0.00 4.40
2394 2714 4.994217 CCGCACTGAAAAACCCAAATAAAT 59.006 37.500 0.00 0.00 0.00 1.40
2605 3174 1.227380 CGCCGAGGGAGAAGATTGG 60.227 63.158 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.702723 CAGGAATGCTCACAGATTTTGAAAAA 59.297 34.615 0.00 0.00 0.00 1.94
39 40 6.040729 TCAGGAATGCTCACAGATTTTGAAAA 59.959 34.615 0.00 0.00 0.00 2.29
40 41 5.535783 TCAGGAATGCTCACAGATTTTGAAA 59.464 36.000 0.00 0.00 0.00 2.69
41 42 5.072055 TCAGGAATGCTCACAGATTTTGAA 58.928 37.500 0.00 0.00 0.00 2.69
42 43 4.654915 TCAGGAATGCTCACAGATTTTGA 58.345 39.130 0.00 0.00 0.00 2.69
43 44 5.381174 TTCAGGAATGCTCACAGATTTTG 57.619 39.130 0.00 0.00 0.00 2.44
44 45 6.209986 TGAATTCAGGAATGCTCACAGATTTT 59.790 34.615 3.38 0.00 0.00 1.82
45 46 5.713389 TGAATTCAGGAATGCTCACAGATTT 59.287 36.000 3.38 0.00 0.00 2.17
46 47 5.125097 GTGAATTCAGGAATGCTCACAGATT 59.875 40.000 8.80 0.00 37.96 2.40
47 48 4.639310 GTGAATTCAGGAATGCTCACAGAT 59.361 41.667 8.80 0.00 37.96 2.90
48 49 4.005650 GTGAATTCAGGAATGCTCACAGA 58.994 43.478 8.80 0.00 37.96 3.41
49 50 4.008330 AGTGAATTCAGGAATGCTCACAG 58.992 43.478 20.50 0.00 39.34 3.66
50 51 4.025040 AGTGAATTCAGGAATGCTCACA 57.975 40.909 20.50 6.09 39.34 3.58
51 52 6.690194 ATTAGTGAATTCAGGAATGCTCAC 57.310 37.500 8.80 14.60 38.16 3.51
52 53 7.707624 AAATTAGTGAATTCAGGAATGCTCA 57.292 32.000 8.80 0.00 34.01 4.26
53 54 8.031277 ACAAAATTAGTGAATTCAGGAATGCTC 58.969 33.333 8.80 0.00 34.01 4.26
54 55 7.899973 ACAAAATTAGTGAATTCAGGAATGCT 58.100 30.769 8.80 3.81 34.01 3.79
55 56 7.008628 CGACAAAATTAGTGAATTCAGGAATGC 59.991 37.037 8.80 0.00 34.01 3.56
56 57 7.485913 CCGACAAAATTAGTGAATTCAGGAATG 59.514 37.037 8.80 4.45 34.01 2.67
57 58 7.176690 ACCGACAAAATTAGTGAATTCAGGAAT 59.823 33.333 8.80 8.52 34.01 3.01
58 59 6.488683 ACCGACAAAATTAGTGAATTCAGGAA 59.511 34.615 8.80 6.40 34.01 3.36
59 60 6.001460 ACCGACAAAATTAGTGAATTCAGGA 58.999 36.000 8.80 0.00 34.01 3.86
60 61 6.254281 ACCGACAAAATTAGTGAATTCAGG 57.746 37.500 8.80 4.45 34.01 3.86
61 62 8.574196 AAAACCGACAAAATTAGTGAATTCAG 57.426 30.769 8.80 0.00 34.01 3.02
62 63 8.934507 AAAAACCGACAAAATTAGTGAATTCA 57.065 26.923 3.38 3.38 34.01 2.57
63 64 9.026074 TGAAAAACCGACAAAATTAGTGAATTC 57.974 29.630 0.00 0.00 34.01 2.17
64 65 8.934507 TGAAAAACCGACAAAATTAGTGAATT 57.065 26.923 0.00 0.00 36.82 2.17
65 66 8.934507 TTGAAAAACCGACAAAATTAGTGAAT 57.065 26.923 0.00 0.00 0.00 2.57
66 67 8.758633 TTTGAAAAACCGACAAAATTAGTGAA 57.241 26.923 0.00 0.00 31.94 3.18
67 68 8.244802 TCTTTGAAAAACCGACAAAATTAGTGA 58.755 29.630 0.00 0.00 34.03 3.41
68 69 8.401046 TCTTTGAAAAACCGACAAAATTAGTG 57.599 30.769 0.00 0.00 34.03 2.74
69 70 8.989653 TTCTTTGAAAAACCGACAAAATTAGT 57.010 26.923 0.00 0.00 34.03 2.24
73 74 9.767684 GATTTTTCTTTGAAAAACCGACAAAAT 57.232 25.926 16.98 2.55 34.03 1.82
74 75 7.952637 CGATTTTTCTTTGAAAAACCGACAAAA 59.047 29.630 20.94 0.21 34.01 2.44
75 76 7.412020 CCGATTTTTCTTTGAAAAACCGACAAA 60.412 33.333 24.89 3.82 34.01 2.83
76 77 6.035112 CCGATTTTTCTTTGAAAAACCGACAA 59.965 34.615 24.89 4.40 34.01 3.18
77 78 5.517054 CCGATTTTTCTTTGAAAAACCGACA 59.483 36.000 24.89 4.97 34.01 4.35
78 79 5.517411 ACCGATTTTTCTTTGAAAAACCGAC 59.483 36.000 24.89 13.99 34.01 4.79
79 80 5.652518 ACCGATTTTTCTTTGAAAAACCGA 58.347 33.333 24.89 5.84 34.01 4.69
80 81 5.959652 ACCGATTTTTCTTTGAAAAACCG 57.040 34.783 19.44 19.44 32.75 4.44
81 82 8.958175 AAAAACCGATTTTTCTTTGAAAAACC 57.042 26.923 16.98 9.34 43.10 3.27
109 110 4.567159 ACTTTTTGGCGCAAATACGAAAAA 59.433 33.333 10.83 0.00 33.19 1.94
110 111 4.113354 ACTTTTTGGCGCAAATACGAAAA 58.887 34.783 10.83 9.00 33.19 2.29
111 112 3.707793 ACTTTTTGGCGCAAATACGAAA 58.292 36.364 10.83 0.26 33.19 3.46
112 113 3.243101 TGACTTTTTGGCGCAAATACGAA 60.243 39.130 10.83 0.00 33.19 3.85
113 114 2.290916 TGACTTTTTGGCGCAAATACGA 59.709 40.909 10.83 0.00 33.19 3.43
114 115 2.656085 TGACTTTTTGGCGCAAATACG 58.344 42.857 10.83 0.00 33.19 3.06
115 116 3.121496 CGTTGACTTTTTGGCGCAAATAC 60.121 43.478 10.83 0.00 33.19 1.89
116 117 3.046390 CGTTGACTTTTTGGCGCAAATA 58.954 40.909 10.83 0.00 33.19 1.40
117 118 1.857837 CGTTGACTTTTTGGCGCAAAT 59.142 42.857 10.83 0.00 33.19 2.32
118 119 1.272781 CGTTGACTTTTTGGCGCAAA 58.727 45.000 10.83 0.00 0.00 3.68
119 120 0.526524 CCGTTGACTTTTTGGCGCAA 60.527 50.000 10.83 0.00 0.00 4.85
120 121 1.064946 CCGTTGACTTTTTGGCGCA 59.935 52.632 10.83 0.00 0.00 6.09
121 122 0.526739 AACCGTTGACTTTTTGGCGC 60.527 50.000 0.00 0.00 0.00 6.53
122 123 1.196200 CAACCGTTGACTTTTTGGCG 58.804 50.000 5.23 0.00 0.00 5.69
123 124 2.190161 GACAACCGTTGACTTTTTGGC 58.810 47.619 18.19 0.00 0.00 4.52
124 125 2.446282 CGACAACCGTTGACTTTTTGG 58.554 47.619 18.19 0.00 0.00 3.28
125 126 2.159490 ACCGACAACCGTTGACTTTTTG 60.159 45.455 18.19 0.00 36.31 2.44
126 127 2.086094 ACCGACAACCGTTGACTTTTT 58.914 42.857 18.19 0.00 36.31 1.94
127 128 1.667212 GACCGACAACCGTTGACTTTT 59.333 47.619 18.19 0.00 36.31 2.27
128 129 1.292992 GACCGACAACCGTTGACTTT 58.707 50.000 18.19 1.40 36.31 2.66
129 130 0.176219 TGACCGACAACCGTTGACTT 59.824 50.000 18.19 1.75 36.31 3.01
130 131 0.176219 TTGACCGACAACCGTTGACT 59.824 50.000 18.19 0.00 36.31 3.41
131 132 2.680429 TTGACCGACAACCGTTGAC 58.320 52.632 18.19 10.74 36.31 3.18
139 140 1.658994 GTTGACCAGTTGACCGACAA 58.341 50.000 0.00 0.00 36.02 3.18
140 141 0.179067 GGTTGACCAGTTGACCGACA 60.179 55.000 0.00 0.00 35.64 4.35
141 142 0.883370 GGGTTGACCAGTTGACCGAC 60.883 60.000 2.12 0.00 39.85 4.79
142 143 1.052124 AGGGTTGACCAGTTGACCGA 61.052 55.000 2.12 0.00 43.89 4.69
143 144 0.682852 TAGGGTTGACCAGTTGACCG 59.317 55.000 2.12 0.00 43.89 4.79
144 145 1.003233 CCTAGGGTTGACCAGTTGACC 59.997 57.143 0.00 0.00 43.89 4.02
145 146 1.975680 TCCTAGGGTTGACCAGTTGAC 59.024 52.381 9.46 0.00 43.89 3.18
146 147 2.257207 CTCCTAGGGTTGACCAGTTGA 58.743 52.381 9.46 0.00 43.89 3.18
147 148 1.339151 GCTCCTAGGGTTGACCAGTTG 60.339 57.143 9.46 0.00 43.89 3.16
148 149 0.984995 GCTCCTAGGGTTGACCAGTT 59.015 55.000 9.46 0.00 43.89 3.16
149 150 1.258445 CGCTCCTAGGGTTGACCAGT 61.258 60.000 9.46 0.00 43.89 4.00
150 151 0.970937 TCGCTCCTAGGGTTGACCAG 60.971 60.000 9.46 0.00 43.89 4.00
151 152 1.077805 TCGCTCCTAGGGTTGACCA 59.922 57.895 9.46 0.00 43.89 4.02
152 153 1.516423 GTCGCTCCTAGGGTTGACC 59.484 63.158 9.46 0.00 40.67 4.02
153 154 1.516423 GGTCGCTCCTAGGGTTGAC 59.484 63.158 9.46 13.40 0.00 3.18
154 155 2.050350 CGGTCGCTCCTAGGGTTGA 61.050 63.158 9.46 1.06 0.00 3.18
155 156 2.348888 ACGGTCGCTCCTAGGGTTG 61.349 63.158 9.46 0.85 0.00 3.77
156 157 2.036890 ACGGTCGCTCCTAGGGTT 59.963 61.111 9.46 0.00 0.00 4.11
157 158 2.754658 CACGGTCGCTCCTAGGGT 60.755 66.667 9.46 0.00 0.00 4.34
158 159 1.601419 TTTCACGGTCGCTCCTAGGG 61.601 60.000 9.46 0.44 0.00 3.53
159 160 0.458025 GTTTCACGGTCGCTCCTAGG 60.458 60.000 0.82 0.82 0.00 3.02
160 161 0.242825 TGTTTCACGGTCGCTCCTAG 59.757 55.000 0.00 0.00 0.00 3.02
161 162 0.242825 CTGTTTCACGGTCGCTCCTA 59.757 55.000 0.00 0.00 0.00 2.94
162 163 1.006102 CTGTTTCACGGTCGCTCCT 60.006 57.895 0.00 0.00 0.00 3.69
163 164 0.878961 AACTGTTTCACGGTCGCTCC 60.879 55.000 0.00 0.00 36.53 4.70
164 165 0.935196 AAACTGTTTCACGGTCGCTC 59.065 50.000 0.00 0.00 36.53 5.03
165 166 0.935196 GAAACTGTTTCACGGTCGCT 59.065 50.000 24.32 0.00 36.53 4.93
166 167 0.935196 AGAAACTGTTTCACGGTCGC 59.065 50.000 28.99 6.21 42.10 5.19
167 168 3.635331 TCTAGAAACTGTTTCACGGTCG 58.365 45.455 28.99 13.62 42.10 4.79
168 169 4.085210 CGTTCTAGAAACTGTTTCACGGTC 60.085 45.833 28.99 17.08 42.10 4.79
169 170 3.800506 CGTTCTAGAAACTGTTTCACGGT 59.199 43.478 28.99 14.77 42.10 4.83
170 171 4.046462 TCGTTCTAGAAACTGTTTCACGG 58.954 43.478 28.06 20.13 42.10 4.94
171 172 4.375105 GCTCGTTCTAGAAACTGTTTCACG 60.375 45.833 28.99 26.97 42.10 4.35
172 173 4.506654 TGCTCGTTCTAGAAACTGTTTCAC 59.493 41.667 28.99 19.12 42.10 3.18
173 174 4.689071 TGCTCGTTCTAGAAACTGTTTCA 58.311 39.130 28.99 16.76 42.10 2.69
174 175 4.376514 GCTGCTCGTTCTAGAAACTGTTTC 60.377 45.833 22.40 22.40 39.96 2.78
175 176 3.495001 GCTGCTCGTTCTAGAAACTGTTT 59.505 43.478 6.78 5.29 0.00 2.83
176 177 3.060602 GCTGCTCGTTCTAGAAACTGTT 58.939 45.455 6.78 0.00 0.00 3.16
177 178 2.678324 GCTGCTCGTTCTAGAAACTGT 58.322 47.619 6.78 0.00 0.00 3.55
178 179 1.651138 CGCTGCTCGTTCTAGAAACTG 59.349 52.381 6.78 0.48 0.00 3.16
179 180 1.983972 CGCTGCTCGTTCTAGAAACT 58.016 50.000 6.78 0.00 0.00 2.66
190 191 1.221466 TTTCAGAACCACGCTGCTCG 61.221 55.000 0.00 0.00 45.38 5.03
191 192 0.235926 GTTTCAGAACCACGCTGCTC 59.764 55.000 0.00 0.00 33.45 4.26
192 193 0.463654 TGTTTCAGAACCACGCTGCT 60.464 50.000 0.00 0.00 34.80 4.24
193 194 0.593128 ATGTTTCAGAACCACGCTGC 59.407 50.000 0.00 0.00 34.80 5.25
194 195 3.300009 GAAATGTTTCAGAACCACGCTG 58.700 45.455 0.79 0.00 37.15 5.18
195 196 2.293399 GGAAATGTTTCAGAACCACGCT 59.707 45.455 7.69 0.00 38.92 5.07
196 197 2.293399 AGGAAATGTTTCAGAACCACGC 59.707 45.455 7.69 0.00 38.92 5.34
197 198 3.304659 CCAGGAAATGTTTCAGAACCACG 60.305 47.826 7.69 0.00 38.92 4.94
198 199 3.005791 CCCAGGAAATGTTTCAGAACCAC 59.994 47.826 7.69 0.00 38.92 4.16
199 200 3.230134 CCCAGGAAATGTTTCAGAACCA 58.770 45.455 7.69 0.00 38.92 3.67
200 201 2.029020 GCCCAGGAAATGTTTCAGAACC 60.029 50.000 7.69 0.00 38.92 3.62
201 202 2.029020 GGCCCAGGAAATGTTTCAGAAC 60.029 50.000 7.69 0.00 38.92 3.01
202 203 2.247358 GGCCCAGGAAATGTTTCAGAA 58.753 47.619 7.69 0.00 38.92 3.02
203 204 1.146774 TGGCCCAGGAAATGTTTCAGA 59.853 47.619 0.00 0.00 38.92 3.27
204 205 1.547372 CTGGCCCAGGAAATGTTTCAG 59.453 52.381 1.63 0.26 38.92 3.02
205 206 1.631405 CTGGCCCAGGAAATGTTTCA 58.369 50.000 1.63 0.00 38.92 2.69
206 207 0.247460 GCTGGCCCAGGAAATGTTTC 59.753 55.000 13.78 0.00 36.46 2.78
207 208 1.194121 GGCTGGCCCAGGAAATGTTT 61.194 55.000 13.78 0.00 31.21 2.83
208 209 1.610379 GGCTGGCCCAGGAAATGTT 60.610 57.895 13.78 0.00 31.21 2.71
209 210 1.214305 TAGGCTGGCCCAGGAAATGT 61.214 55.000 13.78 0.00 36.58 2.71
210 211 0.186873 ATAGGCTGGCCCAGGAAATG 59.813 55.000 13.78 0.00 36.58 2.32
211 212 1.833187 TATAGGCTGGCCCAGGAAAT 58.167 50.000 13.78 0.00 36.58 2.17
212 213 1.494721 CTTATAGGCTGGCCCAGGAAA 59.505 52.381 13.78 0.00 36.58 3.13
213 214 1.140312 CTTATAGGCTGGCCCAGGAA 58.860 55.000 13.78 0.00 36.58 3.36
214 215 0.768221 CCTTATAGGCTGGCCCAGGA 60.768 60.000 13.78 0.00 36.58 3.86
215 216 1.763770 CCTTATAGGCTGGCCCAGG 59.236 63.158 13.78 5.34 36.58 4.45
225 226 2.279252 ACGCGCACGCCTTATAGG 60.279 61.111 5.73 0.00 45.53 2.57
226 227 2.585869 CCACGCGCACGCCTTATAG 61.586 63.158 5.73 0.00 45.53 1.31
227 228 2.583868 CCACGCGCACGCCTTATA 60.584 61.111 5.73 0.00 45.53 0.98
228 229 4.444838 TCCACGCGCACGCCTTAT 62.445 61.111 5.73 0.00 45.53 1.73
240 241 2.203972 TAGGAGAAACGGCGTCCACG 62.204 60.000 15.17 0.00 43.27 4.94
241 242 0.458025 CTAGGAGAAACGGCGTCCAC 60.458 60.000 15.17 8.02 32.23 4.02
242 243 1.888018 CTAGGAGAAACGGCGTCCA 59.112 57.895 15.17 0.41 32.23 4.02
243 244 1.518792 GCTAGGAGAAACGGCGTCC 60.519 63.158 15.17 10.62 0.00 4.79
244 245 0.802607 CAGCTAGGAGAAACGGCGTC 60.803 60.000 15.17 0.63 0.00 5.19
245 246 1.215647 CAGCTAGGAGAAACGGCGT 59.784 57.895 6.77 6.77 0.00 5.68
246 247 1.519455 CCAGCTAGGAGAAACGGCG 60.519 63.158 4.80 4.80 41.22 6.46
247 248 1.815840 GCCAGCTAGGAGAAACGGC 60.816 63.158 6.40 0.00 41.22 5.68
248 249 1.519455 CGCCAGCTAGGAGAAACGG 60.519 63.158 6.40 0.00 40.01 4.44
249 250 2.167861 GCGCCAGCTAGGAGAAACG 61.168 63.158 0.00 3.45 40.01 3.60
250 251 3.801129 GCGCCAGCTAGGAGAAAC 58.199 61.111 0.00 0.00 40.01 2.78
266 267 2.452105 CTTCTAGTCCGCGTCTTAAGC 58.548 52.381 4.92 0.00 0.00 3.09
267 268 2.795331 GCCTTCTAGTCCGCGTCTTAAG 60.795 54.545 4.92 10.01 0.00 1.85
268 269 1.133790 GCCTTCTAGTCCGCGTCTTAA 59.866 52.381 4.92 1.30 0.00 1.85
269 270 0.737219 GCCTTCTAGTCCGCGTCTTA 59.263 55.000 4.92 0.00 0.00 2.10
270 271 1.511768 GCCTTCTAGTCCGCGTCTT 59.488 57.895 4.92 0.00 0.00 3.01
271 272 2.416432 GGCCTTCTAGTCCGCGTCT 61.416 63.158 4.92 5.78 0.00 4.18
272 273 2.104530 GGCCTTCTAGTCCGCGTC 59.895 66.667 4.92 0.00 0.00 5.19
273 274 3.459063 GGGCCTTCTAGTCCGCGT 61.459 66.667 4.92 0.00 0.00 6.01
274 275 1.389609 TAAGGGCCTTCTAGTCCGCG 61.390 60.000 24.77 0.00 0.00 6.46
275 276 0.104487 GTAAGGGCCTTCTAGTCCGC 59.896 60.000 24.77 0.48 0.00 5.54
276 277 0.384669 CGTAAGGGCCTTCTAGTCCG 59.615 60.000 24.77 12.33 0.00 4.79
277 278 1.772836 TCGTAAGGGCCTTCTAGTCC 58.227 55.000 24.77 4.12 38.47 3.85
278 279 2.494870 TGTTCGTAAGGGCCTTCTAGTC 59.505 50.000 24.77 12.31 38.47 2.59
279 280 2.532843 TGTTCGTAAGGGCCTTCTAGT 58.467 47.619 24.77 0.00 38.47 2.57
280 281 3.458189 CATGTTCGTAAGGGCCTTCTAG 58.542 50.000 24.77 15.14 38.47 2.43
281 282 2.169769 CCATGTTCGTAAGGGCCTTCTA 59.830 50.000 24.77 2.60 38.47 2.10
282 283 1.065418 CCATGTTCGTAAGGGCCTTCT 60.065 52.381 24.77 1.49 38.47 2.85
283 284 1.379527 CCATGTTCGTAAGGGCCTTC 58.620 55.000 24.77 13.45 38.47 3.46
284 285 0.034477 CCCATGTTCGTAAGGGCCTT 60.034 55.000 24.44 24.44 33.91 4.35
285 286 1.205460 ACCCATGTTCGTAAGGGCCT 61.205 55.000 0.00 0.00 45.45 5.19
286 287 1.029947 CACCCATGTTCGTAAGGGCC 61.030 60.000 0.00 0.00 45.45 5.80
287 288 0.035820 TCACCCATGTTCGTAAGGGC 60.036 55.000 0.00 0.00 45.45 5.19
288 289 1.553248 TCTCACCCATGTTCGTAAGGG 59.447 52.381 0.00 0.00 46.96 3.95
289 290 2.496070 TCTCTCACCCATGTTCGTAAGG 59.504 50.000 0.00 0.00 38.47 2.69
290 291 3.512680 GTCTCTCACCCATGTTCGTAAG 58.487 50.000 0.00 0.00 0.00 2.34
291 292 2.094906 CGTCTCTCACCCATGTTCGTAA 60.095 50.000 0.00 0.00 0.00 3.18
292 293 1.471287 CGTCTCTCACCCATGTTCGTA 59.529 52.381 0.00 0.00 0.00 3.43
293 294 0.243907 CGTCTCTCACCCATGTTCGT 59.756 55.000 0.00 0.00 0.00 3.85
294 295 0.526211 TCGTCTCTCACCCATGTTCG 59.474 55.000 0.00 0.00 0.00 3.95
295 296 1.272490 TGTCGTCTCTCACCCATGTTC 59.728 52.381 0.00 0.00 0.00 3.18
296 297 1.273606 CTGTCGTCTCTCACCCATGTT 59.726 52.381 0.00 0.00 0.00 2.71
297 298 0.891373 CTGTCGTCTCTCACCCATGT 59.109 55.000 0.00 0.00 0.00 3.21
298 299 1.135257 GTCTGTCGTCTCTCACCCATG 60.135 57.143 0.00 0.00 0.00 3.66
299 300 1.178276 GTCTGTCGTCTCTCACCCAT 58.822 55.000 0.00 0.00 0.00 4.00
300 301 0.179001 TGTCTGTCGTCTCTCACCCA 60.179 55.000 0.00 0.00 0.00 4.51
301 302 1.135257 CATGTCTGTCGTCTCTCACCC 60.135 57.143 0.00 0.00 0.00 4.61
302 303 1.542030 ACATGTCTGTCGTCTCTCACC 59.458 52.381 0.00 0.00 0.00 4.02
303 304 2.226674 TCACATGTCTGTCGTCTCTCAC 59.773 50.000 0.00 0.00 31.62 3.51
304 305 2.226674 GTCACATGTCTGTCGTCTCTCA 59.773 50.000 0.00 0.00 31.62 3.27
305 306 2.726373 CGTCACATGTCTGTCGTCTCTC 60.726 54.545 0.00 0.00 31.62 3.20
306 307 1.197949 CGTCACATGTCTGTCGTCTCT 59.802 52.381 0.00 0.00 31.62 3.10
307 308 1.069159 ACGTCACATGTCTGTCGTCTC 60.069 52.381 0.00 0.00 32.28 3.36
308 309 0.952280 ACGTCACATGTCTGTCGTCT 59.048 50.000 0.00 0.00 32.28 4.18
309 310 1.053048 CACGTCACATGTCTGTCGTC 58.947 55.000 0.00 0.00 34.66 4.20
310 311 0.939577 GCACGTCACATGTCTGTCGT 60.940 55.000 0.00 0.00 36.57 4.34
311 312 1.775344 GCACGTCACATGTCTGTCG 59.225 57.895 0.00 0.00 31.62 4.35
312 313 0.939577 ACGCACGTCACATGTCTGTC 60.940 55.000 0.00 0.00 31.62 3.51
313 314 1.067416 ACGCACGTCACATGTCTGT 59.933 52.632 0.00 0.00 35.44 3.41
314 315 1.488525 CACGCACGTCACATGTCTG 59.511 57.895 0.00 0.00 0.00 3.51
315 316 2.310233 GCACGCACGTCACATGTCT 61.310 57.895 0.00 0.00 0.00 3.41
316 317 2.100024 TTGCACGCACGTCACATGTC 62.100 55.000 0.00 0.00 0.00 3.06
317 318 2.176926 TTGCACGCACGTCACATGT 61.177 52.632 0.00 0.00 0.00 3.21
318 319 1.722163 GTTGCACGCACGTCACATG 60.722 57.895 0.00 0.00 0.00 3.21
319 320 1.436195 AAGTTGCACGCACGTCACAT 61.436 50.000 0.00 0.00 0.00 3.21
320 321 2.103647 AAGTTGCACGCACGTCACA 61.104 52.632 0.00 0.00 0.00 3.58
321 322 1.651132 CAAGTTGCACGCACGTCAC 60.651 57.895 0.00 0.00 0.00 3.67
322 323 2.706432 CAAGTTGCACGCACGTCA 59.294 55.556 0.00 0.00 0.00 4.35
323 324 2.052237 CCAAGTTGCACGCACGTC 60.052 61.111 0.00 0.00 0.00 4.34
324 325 2.403378 AACCAAGTTGCACGCACGT 61.403 52.632 0.00 0.00 0.00 4.49
325 326 1.938814 CAACCAAGTTGCACGCACG 60.939 57.895 0.00 0.00 36.73 5.34
326 327 1.588667 CCAACCAAGTTGCACGCAC 60.589 57.895 0.00 0.00 41.62 5.34
327 328 2.780094 CCCAACCAAGTTGCACGCA 61.780 57.895 0.00 0.00 41.62 5.24
328 329 2.027460 CCCAACCAAGTTGCACGC 59.973 61.111 0.00 0.00 41.62 5.34
329 330 2.027460 GCCCAACCAAGTTGCACG 59.973 61.111 0.00 0.00 41.62 5.34
330 331 2.421314 GGCCCAACCAAGTTGCAC 59.579 61.111 0.00 0.00 41.62 4.57
331 332 3.222855 CGGCCCAACCAAGTTGCA 61.223 61.111 0.00 0.00 41.62 4.08
332 333 3.989787 CCGGCCCAACCAAGTTGC 61.990 66.667 0.00 0.00 41.62 4.17
333 334 2.131067 AACCGGCCCAACCAAGTTG 61.131 57.895 0.00 0.00 42.49 3.16
334 335 2.131067 CAACCGGCCCAACCAAGTT 61.131 57.895 0.00 0.00 39.03 2.66
335 336 2.520741 CAACCGGCCCAACCAAGT 60.521 61.111 0.00 0.00 39.03 3.16
336 337 3.989787 GCAACCGGCCCAACCAAG 61.990 66.667 0.00 0.00 39.03 3.61
337 338 4.841617 TGCAACCGGCCCAACCAA 62.842 61.111 0.00 0.00 43.89 3.67
338 339 4.841617 TTGCAACCGGCCCAACCA 62.842 61.111 0.00 0.00 43.89 3.67
339 340 4.293648 GTTGCAACCGGCCCAACC 62.294 66.667 19.15 4.54 43.89 3.77
340 341 2.579684 TTTGTTGCAACCGGCCCAAC 62.580 55.000 26.14 19.68 43.89 3.77
341 342 1.899437 TTTTGTTGCAACCGGCCCAA 61.899 50.000 26.14 10.28 43.89 4.12
342 343 2.303549 CTTTTGTTGCAACCGGCCCA 62.304 55.000 26.14 3.98 43.89 5.36
343 344 1.594021 CTTTTGTTGCAACCGGCCC 60.594 57.895 26.14 1.01 43.89 5.80
344 345 2.243957 GCTTTTGTTGCAACCGGCC 61.244 57.895 26.14 7.73 43.89 6.13
345 346 2.243957 GGCTTTTGTTGCAACCGGC 61.244 57.895 26.14 21.46 45.13 6.13
346 347 0.671251 TAGGCTTTTGTTGCAACCGG 59.329 50.000 26.14 13.97 0.00 5.28
347 348 1.336755 ACTAGGCTTTTGTTGCAACCG 59.663 47.619 26.14 12.95 0.00 4.44
348 349 3.452755 AACTAGGCTTTTGTTGCAACC 57.547 42.857 26.14 10.21 0.00 3.77
349 350 4.927422 TGTAACTAGGCTTTTGTTGCAAC 58.073 39.130 22.83 22.83 34.44 4.17
350 351 5.358442 TCTTGTAACTAGGCTTTTGTTGCAA 59.642 36.000 20.25 20.25 41.40 4.08
351 352 4.884744 TCTTGTAACTAGGCTTTTGTTGCA 59.115 37.500 11.85 11.85 35.26 4.08
352 353 5.212934 GTCTTGTAACTAGGCTTTTGTTGC 58.787 41.667 0.00 0.56 0.00 4.17
353 354 5.007332 ACGTCTTGTAACTAGGCTTTTGTTG 59.993 40.000 0.00 0.00 0.00 3.33
354 355 5.121105 ACGTCTTGTAACTAGGCTTTTGTT 58.879 37.500 0.00 0.00 0.00 2.83
355 356 4.700700 ACGTCTTGTAACTAGGCTTTTGT 58.299 39.130 0.00 0.00 0.00 2.83
356 357 5.465724 AGAACGTCTTGTAACTAGGCTTTTG 59.534 40.000 0.00 0.00 0.00 2.44
357 358 5.465724 CAGAACGTCTTGTAACTAGGCTTTT 59.534 40.000 0.00 0.00 0.00 2.27
358 359 4.989168 CAGAACGTCTTGTAACTAGGCTTT 59.011 41.667 0.00 0.00 0.00 3.51
359 360 4.280174 TCAGAACGTCTTGTAACTAGGCTT 59.720 41.667 0.00 0.00 0.00 4.35
360 361 3.825014 TCAGAACGTCTTGTAACTAGGCT 59.175 43.478 0.00 0.00 0.00 4.58
361 362 4.170292 TCAGAACGTCTTGTAACTAGGC 57.830 45.455 0.00 0.00 0.00 3.93
362 363 5.981315 TGTTTCAGAACGTCTTGTAACTAGG 59.019 40.000 16.74 0.00 38.65 3.02
363 364 7.459394 TTGTTTCAGAACGTCTTGTAACTAG 57.541 36.000 16.74 0.00 38.65 2.57
364 365 7.707464 TCATTGTTTCAGAACGTCTTGTAACTA 59.293 33.333 16.74 12.35 38.65 2.24
365 366 6.537301 TCATTGTTTCAGAACGTCTTGTAACT 59.463 34.615 16.74 2.56 38.65 2.24
366 367 6.711579 TCATTGTTTCAGAACGTCTTGTAAC 58.288 36.000 11.99 11.99 38.65 2.50
367 368 6.912203 TCATTGTTTCAGAACGTCTTGTAA 57.088 33.333 0.00 0.00 38.65 2.41
368 369 6.537301 AGTTCATTGTTTCAGAACGTCTTGTA 59.463 34.615 0.00 0.00 44.67 2.41
369 370 5.354234 AGTTCATTGTTTCAGAACGTCTTGT 59.646 36.000 0.00 0.00 44.67 3.16
370 371 5.810525 AGTTCATTGTTTCAGAACGTCTTG 58.189 37.500 0.00 0.00 44.67 3.02
371 372 5.817816 AGAGTTCATTGTTTCAGAACGTCTT 59.182 36.000 0.00 0.00 44.67 3.01
372 373 5.360591 AGAGTTCATTGTTTCAGAACGTCT 58.639 37.500 0.00 0.00 44.67 4.18
373 374 5.659048 AGAGTTCATTGTTTCAGAACGTC 57.341 39.130 0.00 0.00 44.67 4.34
374 375 6.436843 AAAGAGTTCATTGTTTCAGAACGT 57.563 33.333 0.00 0.00 44.67 3.99
375 376 7.484641 TCAAAAAGAGTTCATTGTTTCAGAACG 59.515 33.333 0.00 0.00 44.67 3.95
376 377 8.687824 TCAAAAAGAGTTCATTGTTTCAGAAC 57.312 30.769 0.00 0.00 41.37 3.01
377 378 7.975616 CCTCAAAAAGAGTTCATTGTTTCAGAA 59.024 33.333 0.00 0.00 43.12 3.02
378 379 7.416664 CCCTCAAAAAGAGTTCATTGTTTCAGA 60.417 37.037 0.00 0.00 43.12 3.27
379 380 6.698766 CCCTCAAAAAGAGTTCATTGTTTCAG 59.301 38.462 0.00 0.00 43.12 3.02
380 381 6.406849 CCCCTCAAAAAGAGTTCATTGTTTCA 60.407 38.462 0.00 0.00 43.12 2.69
381 382 5.985530 CCCCTCAAAAAGAGTTCATTGTTTC 59.014 40.000 0.00 0.00 43.12 2.78
382 383 5.425217 ACCCCTCAAAAAGAGTTCATTGTTT 59.575 36.000 0.00 0.00 43.12 2.83
383 384 4.962362 ACCCCTCAAAAAGAGTTCATTGTT 59.038 37.500 0.00 0.00 43.12 2.83
384 385 4.546674 ACCCCTCAAAAAGAGTTCATTGT 58.453 39.130 0.00 0.00 43.12 2.71
385 386 6.648879 TTACCCCTCAAAAAGAGTTCATTG 57.351 37.500 0.00 0.00 43.12 2.82
386 387 6.239317 GCTTTACCCCTCAAAAAGAGTTCATT 60.239 38.462 0.00 0.00 43.12 2.57
387 388 5.243954 GCTTTACCCCTCAAAAAGAGTTCAT 59.756 40.000 0.00 0.00 43.12 2.57
388 389 4.583073 GCTTTACCCCTCAAAAAGAGTTCA 59.417 41.667 0.00 0.00 43.12 3.18
389 390 4.583073 TGCTTTACCCCTCAAAAAGAGTTC 59.417 41.667 0.00 0.00 43.12 3.01
390 391 4.542697 TGCTTTACCCCTCAAAAAGAGTT 58.457 39.130 0.00 0.00 43.12 3.01
391 392 4.178956 TGCTTTACCCCTCAAAAAGAGT 57.821 40.909 0.00 0.00 43.12 3.24
392 393 5.728637 AATGCTTTACCCCTCAAAAAGAG 57.271 39.130 0.00 0.00 44.31 2.85
393 394 7.790782 ATAAATGCTTTACCCCTCAAAAAGA 57.209 32.000 0.00 0.00 33.05 2.52
394 395 8.093927 TGAATAAATGCTTTACCCCTCAAAAAG 58.906 33.333 0.00 0.00 34.14 2.27
395 396 7.967908 TGAATAAATGCTTTACCCCTCAAAAA 58.032 30.769 0.00 0.00 0.00 1.94
396 397 7.546250 TGAATAAATGCTTTACCCCTCAAAA 57.454 32.000 0.00 0.00 0.00 2.44
397 398 7.546250 TTGAATAAATGCTTTACCCCTCAAA 57.454 32.000 0.00 0.00 0.00 2.69
398 399 7.732222 ATTGAATAAATGCTTTACCCCTCAA 57.268 32.000 0.00 0.00 0.00 3.02
399 400 8.830915 TTATTGAATAAATGCTTTACCCCTCA 57.169 30.769 0.00 0.00 0.00 3.86
416 417 9.829507 TGTGGACATTTGTTTCTTTTATTGAAT 57.170 25.926 0.00 0.00 0.00 2.57
417 418 9.658799 TTGTGGACATTTGTTTCTTTTATTGAA 57.341 25.926 0.00 0.00 0.00 2.69
418 419 9.311916 CTTGTGGACATTTGTTTCTTTTATTGA 57.688 29.630 0.00 0.00 0.00 2.57
419 420 9.097257 ACTTGTGGACATTTGTTTCTTTTATTG 57.903 29.630 0.00 0.00 0.00 1.90
420 421 9.665719 AACTTGTGGACATTTGTTTCTTTTATT 57.334 25.926 0.00 0.00 0.00 1.40
421 422 9.313118 GAACTTGTGGACATTTGTTTCTTTTAT 57.687 29.630 0.00 0.00 0.00 1.40
422 423 7.762159 GGAACTTGTGGACATTTGTTTCTTTTA 59.238 33.333 0.00 0.00 0.00 1.52
423 424 6.593770 GGAACTTGTGGACATTTGTTTCTTTT 59.406 34.615 0.00 0.00 0.00 2.27
424 425 6.106003 GGAACTTGTGGACATTTGTTTCTTT 58.894 36.000 0.00 0.00 0.00 2.52
425 426 5.395214 GGGAACTTGTGGACATTTGTTTCTT 60.395 40.000 0.00 0.00 0.00 2.52
426 427 4.099419 GGGAACTTGTGGACATTTGTTTCT 59.901 41.667 0.00 0.00 0.00 2.52
427 428 4.142049 TGGGAACTTGTGGACATTTGTTTC 60.142 41.667 0.00 0.00 0.00 2.78
428 429 3.772025 TGGGAACTTGTGGACATTTGTTT 59.228 39.130 0.00 0.00 0.00 2.83
429 430 3.370104 TGGGAACTTGTGGACATTTGTT 58.630 40.909 0.00 0.00 0.00 2.83
430 431 3.025322 TGGGAACTTGTGGACATTTGT 57.975 42.857 0.00 0.00 0.00 2.83
431 432 4.605640 ATTGGGAACTTGTGGACATTTG 57.394 40.909 0.00 0.00 0.00 2.32
432 433 4.653341 TGAATTGGGAACTTGTGGACATTT 59.347 37.500 0.00 0.00 0.00 2.32
433 434 4.222336 TGAATTGGGAACTTGTGGACATT 58.778 39.130 0.00 0.00 0.00 2.71
434 435 3.843422 TGAATTGGGAACTTGTGGACAT 58.157 40.909 0.00 0.00 0.00 3.06
435 436 3.304911 TGAATTGGGAACTTGTGGACA 57.695 42.857 0.00 0.00 0.00 4.02
436 437 3.826157 TCATGAATTGGGAACTTGTGGAC 59.174 43.478 0.00 0.00 0.00 4.02
437 438 4.111255 TCATGAATTGGGAACTTGTGGA 57.889 40.909 0.00 0.00 0.00 4.02
438 439 4.870123 TTCATGAATTGGGAACTTGTGG 57.130 40.909 3.38 0.00 0.00 4.17
439 440 4.687483 GCTTTCATGAATTGGGAACTTGTG 59.313 41.667 9.40 0.00 0.00 3.33
440 441 4.344679 TGCTTTCATGAATTGGGAACTTGT 59.655 37.500 9.40 0.00 0.00 3.16
441 442 4.885413 TGCTTTCATGAATTGGGAACTTG 58.115 39.130 9.40 0.00 0.00 3.16
442 443 4.590222 ACTGCTTTCATGAATTGGGAACTT 59.410 37.500 9.40 0.00 0.00 2.66
443 444 4.154942 ACTGCTTTCATGAATTGGGAACT 58.845 39.130 9.40 0.00 0.00 3.01
444 445 4.219288 AGACTGCTTTCATGAATTGGGAAC 59.781 41.667 9.40 0.00 0.00 3.62
445 446 4.410099 AGACTGCTTTCATGAATTGGGAA 58.590 39.130 9.40 0.00 0.00 3.97
446 447 4.012374 GAGACTGCTTTCATGAATTGGGA 58.988 43.478 9.40 3.59 0.00 4.37
447 448 3.181503 CGAGACTGCTTTCATGAATTGGG 60.182 47.826 9.40 3.52 0.00 4.12
448 449 3.730061 GCGAGACTGCTTTCATGAATTGG 60.730 47.826 9.40 4.28 0.00 3.16
449 450 3.423571 GCGAGACTGCTTTCATGAATTG 58.576 45.455 9.40 6.78 0.00 2.32
450 451 2.421424 GGCGAGACTGCTTTCATGAATT 59.579 45.455 9.40 0.00 34.52 2.17
451 452 2.012673 GGCGAGACTGCTTTCATGAAT 58.987 47.619 9.40 0.00 34.52 2.57
452 453 1.002430 AGGCGAGACTGCTTTCATGAA 59.998 47.619 3.38 3.38 34.52 2.57
453 454 0.610174 AGGCGAGACTGCTTTCATGA 59.390 50.000 0.00 0.00 34.52 3.07
454 455 0.725686 CAGGCGAGACTGCTTTCATG 59.274 55.000 0.00 0.00 34.52 3.07
455 456 3.149899 CAGGCGAGACTGCTTTCAT 57.850 52.632 0.00 0.00 34.52 2.57
456 457 4.681421 CAGGCGAGACTGCTTTCA 57.319 55.556 0.00 0.00 34.52 2.69
462 463 1.004560 TTTGGAGCAGGCGAGACTG 60.005 57.895 0.68 0.68 41.41 3.51
463 464 1.004440 GTTTGGAGCAGGCGAGACT 60.004 57.895 0.00 0.00 0.00 3.24
464 465 0.603975 AAGTTTGGAGCAGGCGAGAC 60.604 55.000 0.00 0.00 0.00 3.36
465 466 0.973632 TAAGTTTGGAGCAGGCGAGA 59.026 50.000 0.00 0.00 0.00 4.04
466 467 1.808411 TTAAGTTTGGAGCAGGCGAG 58.192 50.000 0.00 0.00 0.00 5.03
467 468 2.264005 TTTAAGTTTGGAGCAGGCGA 57.736 45.000 0.00 0.00 0.00 5.54
468 469 3.363341 TTTTTAAGTTTGGAGCAGGCG 57.637 42.857 0.00 0.00 0.00 5.52
486 487 9.508642 TGAGATTTTGGGTTTTGTTTAAGTTTT 57.491 25.926 0.00 0.00 0.00 2.43
487 488 9.679661 ATGAGATTTTGGGTTTTGTTTAAGTTT 57.320 25.926 0.00 0.00 0.00 2.66
488 489 9.325198 GATGAGATTTTGGGTTTTGTTTAAGTT 57.675 29.630 0.00 0.00 0.00 2.66
489 490 8.704668 AGATGAGATTTTGGGTTTTGTTTAAGT 58.295 29.630 0.00 0.00 0.00 2.24
490 491 8.981647 CAGATGAGATTTTGGGTTTTGTTTAAG 58.018 33.333 0.00 0.00 0.00 1.85
491 492 7.440856 GCAGATGAGATTTTGGGTTTTGTTTAA 59.559 33.333 0.00 0.00 0.00 1.52
492 493 6.928492 GCAGATGAGATTTTGGGTTTTGTTTA 59.072 34.615 0.00 0.00 0.00 2.01
493 494 5.759763 GCAGATGAGATTTTGGGTTTTGTTT 59.240 36.000 0.00 0.00 0.00 2.83
494 495 5.163322 TGCAGATGAGATTTTGGGTTTTGTT 60.163 36.000 0.00 0.00 0.00 2.83
495 496 4.344679 TGCAGATGAGATTTTGGGTTTTGT 59.655 37.500 0.00 0.00 0.00 2.83
496 497 4.885413 TGCAGATGAGATTTTGGGTTTTG 58.115 39.130 0.00 0.00 0.00 2.44
497 498 5.163322 TGTTGCAGATGAGATTTTGGGTTTT 60.163 36.000 0.00 0.00 0.00 2.43
498 499 4.344679 TGTTGCAGATGAGATTTTGGGTTT 59.655 37.500 0.00 0.00 0.00 3.27
499 500 3.896888 TGTTGCAGATGAGATTTTGGGTT 59.103 39.130 0.00 0.00 0.00 4.11
500 501 3.499338 TGTTGCAGATGAGATTTTGGGT 58.501 40.909 0.00 0.00 0.00 4.51
501 502 4.524316 TTGTTGCAGATGAGATTTTGGG 57.476 40.909 0.00 0.00 0.00 4.12
502 503 5.805486 CAGATTGTTGCAGATGAGATTTTGG 59.195 40.000 0.00 0.00 0.00 3.28
503 504 5.288712 GCAGATTGTTGCAGATGAGATTTTG 59.711 40.000 0.00 0.00 43.53 2.44
504 505 5.408356 GCAGATTGTTGCAGATGAGATTTT 58.592 37.500 0.00 0.00 43.53 1.82
505 506 4.995124 GCAGATTGTTGCAGATGAGATTT 58.005 39.130 0.00 0.00 43.53 2.17
506 507 4.634184 GCAGATTGTTGCAGATGAGATT 57.366 40.909 0.00 0.00 43.53 2.40
516 517 1.372582 TCGATCCTGCAGATTGTTGC 58.627 50.000 17.39 0.00 44.33 4.17
517 518 3.875727 AGATTCGATCCTGCAGATTGTTG 59.124 43.478 17.39 0.00 37.60 3.33
518 519 3.875727 CAGATTCGATCCTGCAGATTGTT 59.124 43.478 17.39 3.84 37.60 2.83
519 520 3.464907 CAGATTCGATCCTGCAGATTGT 58.535 45.455 17.39 0.00 37.60 2.71
520 521 2.806818 CCAGATTCGATCCTGCAGATTG 59.193 50.000 17.39 10.77 37.69 2.67
521 522 2.437281 ACCAGATTCGATCCTGCAGATT 59.563 45.455 17.39 0.81 34.42 2.40
522 523 2.045524 ACCAGATTCGATCCTGCAGAT 58.954 47.619 17.39 6.84 38.17 2.90
523 524 1.137675 CACCAGATTCGATCCTGCAGA 59.862 52.381 17.39 1.21 0.00 4.26
524 525 1.579698 CACCAGATTCGATCCTGCAG 58.420 55.000 6.78 6.78 0.00 4.41
525 526 0.178767 CCACCAGATTCGATCCTGCA 59.821 55.000 8.56 0.00 0.00 4.41
526 527 1.162800 GCCACCAGATTCGATCCTGC 61.163 60.000 8.56 0.00 0.00 4.85
527 528 0.467384 AGCCACCAGATTCGATCCTG 59.533 55.000 7.39 7.39 0.00 3.86
528 529 0.467384 CAGCCACCAGATTCGATCCT 59.533 55.000 0.00 0.00 0.00 3.24
529 530 0.465705 TCAGCCACCAGATTCGATCC 59.534 55.000 0.00 0.00 0.00 3.36
530 531 1.410517 TCTCAGCCACCAGATTCGATC 59.589 52.381 0.00 0.00 0.00 3.69
531 532 1.489481 TCTCAGCCACCAGATTCGAT 58.511 50.000 0.00 0.00 0.00 3.59
532 533 1.205655 CTTCTCAGCCACCAGATTCGA 59.794 52.381 0.00 0.00 0.00 3.71
533 534 1.649664 CTTCTCAGCCACCAGATTCG 58.350 55.000 0.00 0.00 0.00 3.34
534 535 2.016096 GCCTTCTCAGCCACCAGATTC 61.016 57.143 0.00 0.00 0.00 2.52
535 536 0.034670 GCCTTCTCAGCCACCAGATT 60.035 55.000 0.00 0.00 0.00 2.40
536 537 1.606531 GCCTTCTCAGCCACCAGAT 59.393 57.895 0.00 0.00 0.00 2.90
537 538 3.072476 GCCTTCTCAGCCACCAGA 58.928 61.111 0.00 0.00 0.00 3.86
549 550 9.545071 CATTGCTATGAATAAGGTGTGGCCTTC 62.545 44.444 3.32 0.00 44.15 3.46
550 551 7.860931 CATTGCTATGAATAAGGTGTGGCCTT 61.861 42.308 3.32 3.87 45.68 4.35
551 552 6.442682 CATTGCTATGAATAAGGTGTGGCCT 61.443 44.000 3.32 0.00 41.00 5.19
552 553 2.930950 TGCTATGAATAAGGTGTGGCC 58.069 47.619 0.00 0.00 37.58 5.36
553 554 4.794003 GCATTGCTATGAATAAGGTGTGGC 60.794 45.833 12.54 0.00 33.37 5.01
554 555 4.581824 AGCATTGCTATGAATAAGGTGTGG 59.418 41.667 10.00 0.00 36.99 4.17
555 556 5.762825 AGCATTGCTATGAATAAGGTGTG 57.237 39.130 10.00 0.00 36.99 3.82
556 557 6.828273 TGTTAGCATTGCTATGAATAAGGTGT 59.172 34.615 18.62 0.00 41.01 4.16
557 558 7.227314 TCTGTTAGCATTGCTATGAATAAGGTG 59.773 37.037 18.62 4.14 41.01 4.00
558 559 7.282585 TCTGTTAGCATTGCTATGAATAAGGT 58.717 34.615 18.62 0.00 41.01 3.50
559 560 7.734924 TCTGTTAGCATTGCTATGAATAAGG 57.265 36.000 18.62 4.89 41.01 2.69
561 562 9.955208 CATTTCTGTTAGCATTGCTATGAATAA 57.045 29.630 18.62 11.08 41.01 1.40
562 563 9.123902 ACATTTCTGTTAGCATTGCTATGAATA 57.876 29.630 18.62 13.00 41.01 1.75
563 564 7.919091 CACATTTCTGTTAGCATTGCTATGAAT 59.081 33.333 18.62 11.28 41.01 2.57
564 565 7.252708 CACATTTCTGTTAGCATTGCTATGAA 58.747 34.615 18.62 17.95 41.01 2.57
565 566 6.183360 CCACATTTCTGTTAGCATTGCTATGA 60.183 38.462 18.62 13.83 41.01 2.15
566 567 5.975344 CCACATTTCTGTTAGCATTGCTATG 59.025 40.000 18.62 14.76 41.01 2.23
567 568 5.887598 TCCACATTTCTGTTAGCATTGCTAT 59.112 36.000 18.62 0.67 41.01 2.97
568 569 5.252547 TCCACATTTCTGTTAGCATTGCTA 58.747 37.500 14.33 14.33 39.56 3.49
569 570 4.081406 TCCACATTTCTGTTAGCATTGCT 58.919 39.130 16.63 16.63 36.64 3.91
570 571 4.439305 TCCACATTTCTGTTAGCATTGC 57.561 40.909 0.00 0.00 31.62 3.56
571 572 8.192774 ACATATTCCACATTTCTGTTAGCATTG 58.807 33.333 0.00 0.00 31.62 2.82
572 573 8.192774 CACATATTCCACATTTCTGTTAGCATT 58.807 33.333 0.00 0.00 31.62 3.56
573 574 7.557358 TCACATATTCCACATTTCTGTTAGCAT 59.443 33.333 0.00 0.00 31.62 3.79
574 575 6.883756 TCACATATTCCACATTTCTGTTAGCA 59.116 34.615 0.00 0.00 31.62 3.49
575 576 7.320443 TCACATATTCCACATTTCTGTTAGC 57.680 36.000 0.00 0.00 31.62 3.09
576 577 8.400947 CCTTCACATATTCCACATTTCTGTTAG 58.599 37.037 0.00 0.00 31.62 2.34
577 578 7.888021 ACCTTCACATATTCCACATTTCTGTTA 59.112 33.333 0.00 0.00 31.62 2.41
578 579 6.721208 ACCTTCACATATTCCACATTTCTGTT 59.279 34.615 0.00 0.00 31.62 3.16
579 580 6.248433 ACCTTCACATATTCCACATTTCTGT 58.752 36.000 0.00 0.00 35.44 3.41
590 591 5.463724 GTCGAGATCCAACCTTCACATATTC 59.536 44.000 0.00 0.00 0.00 1.75
614 615 3.067180 CGGATGGATTCTTTGTTGGATGG 59.933 47.826 0.00 0.00 0.00 3.51
621 622 1.942657 CGCATCGGATGGATTCTTTGT 59.057 47.619 18.96 0.00 31.28 2.83
654 655 2.420722 GCCTTCTACCGATCGATCCTAG 59.579 54.545 18.66 16.64 0.00 3.02
669 670 0.967380 CCCGGAAATGCTTGCCTTCT 60.967 55.000 0.73 0.00 0.00 2.85
671 672 0.541764 TTCCCGGAAATGCTTGCCTT 60.542 50.000 0.73 0.00 0.00 4.35
759 763 3.007635 GTCCTGGGACAAAAATCCTACG 58.992 50.000 14.20 0.00 44.02 3.51
817 821 2.615447 GCCAGCGATTGATTCATCTTCA 59.385 45.455 0.00 0.00 0.00 3.02
819 823 1.600957 CGCCAGCGATTGATTCATCTT 59.399 47.619 6.06 0.00 42.83 2.40
855 861 0.890683 GGACCAATGGAAGCCACTTG 59.109 55.000 6.16 0.00 35.80 3.16
867 873 4.457949 GGAAATACTTCAACGTGGACCAAT 59.542 41.667 0.00 0.00 32.75 3.16
868 874 3.816523 GGAAATACTTCAACGTGGACCAA 59.183 43.478 0.00 0.00 32.75 3.67
969 977 4.704833 TTGCAGCGGCCAGGAGAC 62.705 66.667 6.32 0.00 40.13 3.36
970 978 3.272364 ATTTGCAGCGGCCAGGAGA 62.272 57.895 6.32 0.00 40.13 3.71
971 979 2.753043 ATTTGCAGCGGCCAGGAG 60.753 61.111 6.32 0.00 40.13 3.69
978 986 2.052766 GCGATCGATTTGCAGCGG 60.053 61.111 21.57 0.00 34.56 5.52
1129 1137 4.280019 GGTGTGGGTGTGGGGGAC 62.280 72.222 0.00 0.00 0.00 4.46
1130 1138 4.525028 AGGTGTGGGTGTGGGGGA 62.525 66.667 0.00 0.00 0.00 4.81
1131 1139 4.284550 CAGGTGTGGGTGTGGGGG 62.285 72.222 0.00 0.00 0.00 5.40
1132 1140 4.974721 GCAGGTGTGGGTGTGGGG 62.975 72.222 0.00 0.00 0.00 4.96
1133 1141 4.974721 GGCAGGTGTGGGTGTGGG 62.975 72.222 0.00 0.00 0.00 4.61
1134 1142 4.202574 TGGCAGGTGTGGGTGTGG 62.203 66.667 0.00 0.00 0.00 4.17
1135 1143 2.906897 GTGGCAGGTGTGGGTGTG 60.907 66.667 0.00 0.00 0.00 3.82
1136 1144 4.204028 GGTGGCAGGTGTGGGTGT 62.204 66.667 0.00 0.00 0.00 4.16
1137 1145 4.202574 TGGTGGCAGGTGTGGGTG 62.203 66.667 0.00 0.00 0.00 4.61
1138 1146 4.204028 GTGGTGGCAGGTGTGGGT 62.204 66.667 0.00 0.00 0.00 4.51
1140 1148 4.562425 ACGTGGTGGCAGGTGTGG 62.562 66.667 0.00 0.00 0.00 4.17
1141 1149 2.972505 GACGTGGTGGCAGGTGTG 60.973 66.667 0.00 0.00 0.00 3.82
1142 1150 4.250305 GGACGTGGTGGCAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
1149 1157 4.636435 GTGTGGGGGACGTGGTGG 62.636 72.222 0.00 0.00 0.00 4.61
1150 1158 4.636435 GGTGTGGGGGACGTGGTG 62.636 72.222 0.00 0.00 0.00 4.17
1153 1161 4.636435 GTGGGTGTGGGGGACGTG 62.636 72.222 0.00 0.00 0.00 4.49
1155 1163 4.636435 GTGTGGGTGTGGGGGACG 62.636 72.222 0.00 0.00 0.00 4.79
1156 1164 4.280019 GGTGTGGGTGTGGGGGAC 62.280 72.222 0.00 0.00 0.00 4.46
1230 1241 3.358076 CTCGAACTCGGCTGGGGTC 62.358 68.421 0.00 0.00 40.29 4.46
1231 1242 3.382832 CTCGAACTCGGCTGGGGT 61.383 66.667 0.00 0.00 40.29 4.95
1236 1247 4.117661 GCGTCCTCGAACTCGGCT 62.118 66.667 0.00 0.00 40.29 5.52
1343 1354 4.106925 CCTCCTCCTGCAGCACCC 62.107 72.222 8.66 0.00 0.00 4.61
1393 1404 4.724262 GTCCTGGACCTTCTTGGC 57.276 61.111 16.14 0.00 40.22 4.52
1492 1503 2.666098 GCCGCTGGTAAGGGAAGGA 61.666 63.158 0.00 0.00 38.63 3.36
1641 1657 2.166459 TCTCAGAAGGCAACGTATCCAG 59.834 50.000 8.48 0.00 46.39 3.86
1709 1728 4.159377 TGCTTGAACGGAAATAAAGCTG 57.841 40.909 7.17 0.00 42.87 4.24
1793 1812 9.678941 TGAGCGTATCATTACTCTAAATAACAG 57.321 33.333 0.00 0.00 31.12 3.16
1811 1830 2.388735 TCAATCCCTCACTGAGCGTAT 58.611 47.619 0.00 0.00 0.00 3.06
1814 1833 2.322355 AATCAATCCCTCACTGAGCG 57.678 50.000 0.00 0.00 0.00 5.03
1815 1834 4.070716 CCATAATCAATCCCTCACTGAGC 58.929 47.826 0.00 0.00 0.00 4.26
1821 1840 3.790976 TGAACCCCATAATCAATCCCTCA 59.209 43.478 0.00 0.00 0.00 3.86
1955 1974 3.649843 TCCTACACCACGGATCCTTTAT 58.350 45.455 10.75 0.00 0.00 1.40
1962 1981 3.005472 CACGATAATCCTACACCACGGAT 59.995 47.826 0.00 0.00 41.68 4.18
1994 2016 9.869844 CACTCTCTGTCATTTTTACAAAACTAG 57.130 33.333 0.00 0.00 0.00 2.57
1997 2019 6.972328 TGCACTCTCTGTCATTTTTACAAAAC 59.028 34.615 0.00 0.00 0.00 2.43
2094 2116 0.690762 TTCTCTACGCCTGGGCTTTT 59.309 50.000 10.04 0.00 39.32 2.27
2106 2128 5.505819 GGCACACACCTTTTCTTTTCTCTAC 60.506 44.000 0.00 0.00 0.00 2.59
2181 2498 5.592054 TGGATTGAGTGACTCGAATACATC 58.408 41.667 6.63 0.00 32.35 3.06
2225 2542 3.450578 GTTCTAGTTGACGTGTTCACCA 58.549 45.455 0.00 0.00 32.26 4.17
2277 2594 4.530710 AAATTAGGGGGCGAAAAGAAAC 57.469 40.909 0.00 0.00 0.00 2.78
2311 2628 4.396478 GGAAACAAATTGGACTAGAGAGGC 59.604 45.833 0.00 0.00 0.00 4.70
2314 2631 6.187727 ACTGGAAACAAATTGGACTAGAGA 57.812 37.500 0.00 0.00 42.06 3.10
2360 2680 3.965379 TTCAGTGCGGGTCTTTACATA 57.035 42.857 0.00 0.00 0.00 2.29
2377 2697 6.183360 TGGTGTCGATTTATTTGGGTTTTTCA 60.183 34.615 0.00 0.00 0.00 2.69
2394 2714 1.628340 ACATCCTGGAAATGGTGTCGA 59.372 47.619 0.00 0.00 0.00 4.20
2494 3063 6.183360 CCTGCTAGCCTTCTTATACTCTTCAA 60.183 42.308 13.29 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.