Multiple sequence alignment - TraesCS7B01G447000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G447000 chr7B 100.000 2378 0 0 1 2378 709654032 709656409 0.000000e+00 4392
1 TraesCS7B01G447000 chr7B 96.899 129 3 1 2251 2378 593840532 593840660 5.150000e-52 215
2 TraesCS7B01G447000 chr6B 97.598 2040 47 2 223 2261 617028776 617030814 0.000000e+00 3494
3 TraesCS7B01G447000 chr2B 97.305 2041 52 3 223 2261 435353111 435351072 0.000000e+00 3461
4 TraesCS7B01G447000 chr4A 97.057 2039 54 5 223 2260 602464945 602462912 0.000000e+00 3428
5 TraesCS7B01G447000 chr5A 96.861 2039 59 5 223 2260 692979414 692981448 0.000000e+00 3406
6 TraesCS7B01G447000 chr5A 96.703 2002 62 4 261 2260 693957649 693959648 0.000000e+00 3328
7 TraesCS7B01G447000 chr5A 96.020 201 8 0 1 201 342328695 342328495 6.340000e-86 327
8 TraesCS7B01G447000 chr5B 96.765 2040 63 3 223 2260 576501642 576503680 0.000000e+00 3398
9 TraesCS7B01G447000 chr1B 96.617 1892 60 4 371 2261 41212305 41214193 0.000000e+00 3136
10 TraesCS7B01G447000 chr1B 96.513 1893 61 5 371 2261 41174293 41176182 0.000000e+00 3125
11 TraesCS7B01G447000 chr1B 97.060 1803 48 4 223 2022 17134953 17136753 0.000000e+00 3031
12 TraesCS7B01G447000 chr1B 96.040 202 8 0 1 202 681479795 681479594 1.760000e-86 329
13 TraesCS7B01G447000 chr3A 90.562 2098 106 21 223 2262 224968470 224970533 0.000000e+00 2693
14 TraesCS7B01G447000 chr1D 98.010 201 4 0 1 201 11505278 11505078 1.350000e-92 350
15 TraesCS7B01G447000 chr1D 100.000 118 0 0 2261 2378 388096247 388096130 3.980000e-53 219
16 TraesCS7B01G447000 chrUn 97.015 201 6 0 1 201 340883250 340883450 2.930000e-89 339
17 TraesCS7B01G447000 chr2D 97.015 201 6 0 1 201 19726320 19726520 2.930000e-89 339
18 TraesCS7B01G447000 chr2D 97.015 201 6 0 1 201 19750172 19750372 2.930000e-89 339
19 TraesCS7B01G447000 chr4D 96.517 201 7 0 1 201 446595137 446594937 1.360000e-87 333
20 TraesCS7B01G447000 chr4D 100.000 118 0 0 2261 2378 276284830 276284947 3.980000e-53 219
21 TraesCS7B01G447000 chr4D 100.000 118 0 0 2261 2378 340631953 340632070 3.980000e-53 219
22 TraesCS7B01G447000 chr5D 96.020 201 8 0 1 201 473055328 473055128 6.340000e-86 327
23 TraesCS7B01G447000 chr5D 100.000 118 0 0 2261 2378 72746721 72746604 3.980000e-53 219
24 TraesCS7B01G447000 chr6D 100.000 118 0 0 2261 2378 331609698 331609581 3.980000e-53 219
25 TraesCS7B01G447000 chr6D 96.899 129 3 1 2251 2378 421200549 421200421 5.150000e-52 215
26 TraesCS7B01G447000 chr1A 100.000 118 0 0 2261 2378 354454658 354454775 3.980000e-53 219
27 TraesCS7B01G447000 chr7D 96.899 129 3 1 2251 2378 571754804 571754932 5.150000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G447000 chr7B 709654032 709656409 2377 False 4392 4392 100.000 1 2378 1 chr7B.!!$F2 2377
1 TraesCS7B01G447000 chr6B 617028776 617030814 2038 False 3494 3494 97.598 223 2261 1 chr6B.!!$F1 2038
2 TraesCS7B01G447000 chr2B 435351072 435353111 2039 True 3461 3461 97.305 223 2261 1 chr2B.!!$R1 2038
3 TraesCS7B01G447000 chr4A 602462912 602464945 2033 True 3428 3428 97.057 223 2260 1 chr4A.!!$R1 2037
4 TraesCS7B01G447000 chr5A 692979414 692981448 2034 False 3406 3406 96.861 223 2260 1 chr5A.!!$F1 2037
5 TraesCS7B01G447000 chr5A 693957649 693959648 1999 False 3328 3328 96.703 261 2260 1 chr5A.!!$F2 1999
6 TraesCS7B01G447000 chr5B 576501642 576503680 2038 False 3398 3398 96.765 223 2260 1 chr5B.!!$F1 2037
7 TraesCS7B01G447000 chr1B 41212305 41214193 1888 False 3136 3136 96.617 371 2261 1 chr1B.!!$F3 1890
8 TraesCS7B01G447000 chr1B 41174293 41176182 1889 False 3125 3125 96.513 371 2261 1 chr1B.!!$F2 1890
9 TraesCS7B01G447000 chr1B 17134953 17136753 1800 False 3031 3031 97.060 223 2022 1 chr1B.!!$F1 1799
10 TraesCS7B01G447000 chr3A 224968470 224970533 2063 False 2693 2693 90.562 223 2262 1 chr3A.!!$F1 2039

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 446 2.167693 TCCAGTAGGTATTGCTTGTCGG 59.832 50.0 0.0 0.0 35.89 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2306 2371 0.037734 GAGGAAAGGAAGGGGCGAAA 59.962 55.0 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.932356 ATGCAGATTTAGTCAACACTATGG 57.068 37.500 0.00 0.00 34.92 2.74
24 25 6.048732 TGCAGATTTAGTCAACACTATGGA 57.951 37.500 0.00 0.00 34.92 3.41
25 26 6.653020 TGCAGATTTAGTCAACACTATGGAT 58.347 36.000 0.00 0.00 34.92 3.41
26 27 6.763135 TGCAGATTTAGTCAACACTATGGATC 59.237 38.462 0.00 0.00 34.92 3.36
27 28 6.763135 GCAGATTTAGTCAACACTATGGATCA 59.237 38.462 0.00 0.00 34.92 2.92
28 29 7.042187 GCAGATTTAGTCAACACTATGGATCAG 60.042 40.741 0.00 0.00 34.92 2.90
29 30 7.984050 CAGATTTAGTCAACACTATGGATCAGT 59.016 37.037 0.00 0.00 34.92 3.41
30 31 9.201989 AGATTTAGTCAACACTATGGATCAGTA 57.798 33.333 0.00 0.00 34.92 2.74
31 32 9.988815 GATTTAGTCAACACTATGGATCAGTAT 57.011 33.333 0.00 0.00 34.92 2.12
36 37 8.982723 AGTCAACACTATGGATCAGTATTTAGT 58.017 33.333 0.00 0.00 0.00 2.24
37 38 9.601217 GTCAACACTATGGATCAGTATTTAGTT 57.399 33.333 0.00 0.00 0.00 2.24
46 47 8.893219 TGGATCAGTATTTAGTTTAGATGCAG 57.107 34.615 0.00 0.00 30.65 4.41
47 48 8.704668 TGGATCAGTATTTAGTTTAGATGCAGA 58.295 33.333 0.00 0.00 30.65 4.26
48 49 9.717942 GGATCAGTATTTAGTTTAGATGCAGAT 57.282 33.333 0.00 0.00 0.00 2.90
56 57 9.890629 ATTTAGTTTAGATGCAGATACAGTCAA 57.109 29.630 0.00 0.00 0.00 3.18
57 58 8.703604 TTAGTTTAGATGCAGATACAGTCAAC 57.296 34.615 0.00 0.00 0.00 3.18
58 59 6.701340 AGTTTAGATGCAGATACAGTCAACA 58.299 36.000 0.00 0.00 0.00 3.33
59 60 6.591834 AGTTTAGATGCAGATACAGTCAACAC 59.408 38.462 0.00 0.00 0.00 3.32
60 61 4.815533 AGATGCAGATACAGTCAACACT 57.184 40.909 0.00 0.00 0.00 3.55
61 62 5.921962 AGATGCAGATACAGTCAACACTA 57.078 39.130 0.00 0.00 0.00 2.74
62 63 5.900425 AGATGCAGATACAGTCAACACTAG 58.100 41.667 0.00 0.00 0.00 2.57
63 64 4.456280 TGCAGATACAGTCAACACTAGG 57.544 45.455 0.00 0.00 0.00 3.02
64 65 3.832490 TGCAGATACAGTCAACACTAGGT 59.168 43.478 0.00 0.00 0.00 3.08
65 66 5.014202 TGCAGATACAGTCAACACTAGGTA 58.986 41.667 0.00 0.00 0.00 3.08
66 67 5.656859 TGCAGATACAGTCAACACTAGGTAT 59.343 40.000 0.00 0.00 28.78 2.73
67 68 6.183360 TGCAGATACAGTCAACACTAGGTATC 60.183 42.308 0.00 0.00 38.08 2.24
68 69 6.183360 GCAGATACAGTCAACACTAGGTATCA 60.183 42.308 0.00 0.00 39.18 2.15
69 70 7.630728 GCAGATACAGTCAACACTAGGTATCAA 60.631 40.741 0.00 0.00 39.18 2.57
70 71 8.417106 CAGATACAGTCAACACTAGGTATCAAT 58.583 37.037 0.00 0.00 39.18 2.57
71 72 9.642343 AGATACAGTCAACACTAGGTATCAATA 57.358 33.333 0.00 0.00 39.18 1.90
72 73 9.680315 GATACAGTCAACACTAGGTATCAATAC 57.320 37.037 0.00 0.00 37.90 1.89
73 74 7.476540 ACAGTCAACACTAGGTATCAATACA 57.523 36.000 0.00 0.00 34.98 2.29
74 75 8.079211 ACAGTCAACACTAGGTATCAATACAT 57.921 34.615 0.00 0.00 34.98 2.29
75 76 7.981789 ACAGTCAACACTAGGTATCAATACATG 59.018 37.037 0.00 0.00 34.98 3.21
76 77 7.981789 CAGTCAACACTAGGTATCAATACATGT 59.018 37.037 2.69 2.69 34.98 3.21
77 78 8.540388 AGTCAACACTAGGTATCAATACATGTT 58.460 33.333 2.30 4.68 34.98 2.71
78 79 9.162764 GTCAACACTAGGTATCAATACATGTTT 57.837 33.333 2.30 0.00 34.98 2.83
79 80 9.161629 TCAACACTAGGTATCAATACATGTTTG 57.838 33.333 2.30 8.90 34.98 2.93
80 81 7.553881 ACACTAGGTATCAATACATGTTTGC 57.446 36.000 2.30 0.00 34.98 3.68
81 82 6.257849 ACACTAGGTATCAATACATGTTTGCG 59.742 38.462 2.30 0.00 34.98 4.85
82 83 6.478673 CACTAGGTATCAATACATGTTTGCGA 59.521 38.462 2.30 0.00 34.98 5.10
83 84 7.011016 CACTAGGTATCAATACATGTTTGCGAA 59.989 37.037 2.30 0.00 34.98 4.70
84 85 6.942532 AGGTATCAATACATGTTTGCGAAT 57.057 33.333 2.30 1.99 34.98 3.34
85 86 6.728200 AGGTATCAATACATGTTTGCGAATG 58.272 36.000 2.30 0.00 34.98 2.67
86 87 6.318648 AGGTATCAATACATGTTTGCGAATGT 59.681 34.615 2.30 0.00 40.13 2.71
87 88 6.972328 GGTATCAATACATGTTTGCGAATGTT 59.028 34.615 2.30 0.00 38.05 2.71
88 89 8.126074 GGTATCAATACATGTTTGCGAATGTTA 58.874 33.333 2.30 0.00 38.05 2.41
89 90 9.663904 GTATCAATACATGTTTGCGAATGTTAT 57.336 29.630 2.30 0.00 38.05 1.89
92 93 9.662545 TCAATACATGTTTGCGAATGTTATATG 57.337 29.630 2.30 0.00 38.05 1.78
93 94 8.419435 CAATACATGTTTGCGAATGTTATATGC 58.581 33.333 2.30 0.00 38.05 3.14
94 95 5.889219 ACATGTTTGCGAATGTTATATGCA 58.111 33.333 0.00 0.00 33.19 3.96
95 96 6.506147 ACATGTTTGCGAATGTTATATGCAT 58.494 32.000 3.79 3.79 33.19 3.96
96 97 6.418523 ACATGTTTGCGAATGTTATATGCATG 59.581 34.615 10.16 0.00 33.19 4.06
97 98 5.280164 TGTTTGCGAATGTTATATGCATGG 58.720 37.500 10.16 0.00 35.20 3.66
98 99 5.163571 TGTTTGCGAATGTTATATGCATGGT 60.164 36.000 10.16 0.04 35.20 3.55
99 100 5.512753 TTGCGAATGTTATATGCATGGTT 57.487 34.783 10.16 0.00 35.20 3.67
100 101 5.512753 TGCGAATGTTATATGCATGGTTT 57.487 34.783 10.16 0.00 0.00 3.27
101 102 5.280164 TGCGAATGTTATATGCATGGTTTG 58.720 37.500 10.16 0.71 0.00 2.93
102 103 5.163571 TGCGAATGTTATATGCATGGTTTGT 60.164 36.000 10.16 0.00 0.00 2.83
103 104 5.748152 GCGAATGTTATATGCATGGTTTGTT 59.252 36.000 10.16 0.00 0.00 2.83
104 105 6.915300 GCGAATGTTATATGCATGGTTTGTTA 59.085 34.615 10.16 0.00 0.00 2.41
105 106 7.594758 GCGAATGTTATATGCATGGTTTGTTAT 59.405 33.333 10.16 0.00 0.00 1.89
106 107 9.462174 CGAATGTTATATGCATGGTTTGTTATT 57.538 29.630 10.16 0.15 0.00 1.40
114 115 9.797642 ATATGCATGGTTTGTTATTAGATCTCA 57.202 29.630 10.16 0.00 0.00 3.27
115 116 7.936496 TGCATGGTTTGTTATTAGATCTCAA 57.064 32.000 0.00 0.00 0.00 3.02
116 117 7.761409 TGCATGGTTTGTTATTAGATCTCAAC 58.239 34.615 0.00 3.17 0.00 3.18
117 118 7.611467 TGCATGGTTTGTTATTAGATCTCAACT 59.389 33.333 0.00 0.00 0.00 3.16
118 119 8.462016 GCATGGTTTGTTATTAGATCTCAACTT 58.538 33.333 0.00 0.00 0.00 2.66
119 120 9.994432 CATGGTTTGTTATTAGATCTCAACTTC 57.006 33.333 0.00 0.00 0.00 3.01
120 121 9.739276 ATGGTTTGTTATTAGATCTCAACTTCA 57.261 29.630 0.00 0.00 0.00 3.02
121 122 9.219603 TGGTTTGTTATTAGATCTCAACTTCAG 57.780 33.333 0.00 0.00 0.00 3.02
122 123 8.178313 GGTTTGTTATTAGATCTCAACTTCAGC 58.822 37.037 0.00 0.00 0.00 4.26
123 124 8.721478 GTTTGTTATTAGATCTCAACTTCAGCA 58.279 33.333 0.00 0.00 0.00 4.41
124 125 8.484641 TTGTTATTAGATCTCAACTTCAGCAG 57.515 34.615 0.00 0.00 0.00 4.24
125 126 6.536582 TGTTATTAGATCTCAACTTCAGCAGC 59.463 38.462 0.00 0.00 0.00 5.25
126 127 4.815533 TTAGATCTCAACTTCAGCAGCT 57.184 40.909 0.00 0.00 0.00 4.24
127 128 5.921962 TTAGATCTCAACTTCAGCAGCTA 57.078 39.130 0.00 0.00 0.00 3.32
128 129 6.477053 TTAGATCTCAACTTCAGCAGCTAT 57.523 37.500 0.00 0.00 0.00 2.97
129 130 5.356291 AGATCTCAACTTCAGCAGCTATT 57.644 39.130 0.00 0.00 0.00 1.73
130 131 5.743117 AGATCTCAACTTCAGCAGCTATTT 58.257 37.500 0.00 0.00 0.00 1.40
131 132 6.179040 AGATCTCAACTTCAGCAGCTATTTT 58.821 36.000 0.00 0.00 0.00 1.82
132 133 6.658391 AGATCTCAACTTCAGCAGCTATTTTT 59.342 34.615 0.00 0.00 0.00 1.94
133 134 6.246420 TCTCAACTTCAGCAGCTATTTTTC 57.754 37.500 0.00 0.00 0.00 2.29
134 135 5.764686 TCTCAACTTCAGCAGCTATTTTTCA 59.235 36.000 0.00 0.00 0.00 2.69
135 136 6.432162 TCTCAACTTCAGCAGCTATTTTTCAT 59.568 34.615 0.00 0.00 0.00 2.57
136 137 6.985117 TCAACTTCAGCAGCTATTTTTCATT 58.015 32.000 0.00 0.00 0.00 2.57
137 138 6.864685 TCAACTTCAGCAGCTATTTTTCATTG 59.135 34.615 0.00 0.00 0.00 2.82
138 139 6.336842 ACTTCAGCAGCTATTTTTCATTGT 57.663 33.333 0.00 0.00 0.00 2.71
139 140 6.752168 ACTTCAGCAGCTATTTTTCATTGTT 58.248 32.000 0.00 0.00 0.00 2.83
140 141 7.885297 ACTTCAGCAGCTATTTTTCATTGTTA 58.115 30.769 0.00 0.00 0.00 2.41
141 142 8.025445 ACTTCAGCAGCTATTTTTCATTGTTAG 58.975 33.333 0.00 0.00 0.00 2.34
142 143 6.855836 TCAGCAGCTATTTTTCATTGTTAGG 58.144 36.000 0.00 0.00 0.00 2.69
143 144 6.658816 TCAGCAGCTATTTTTCATTGTTAGGA 59.341 34.615 0.00 0.00 0.00 2.94
144 145 6.971184 CAGCAGCTATTTTTCATTGTTAGGAG 59.029 38.462 0.00 0.00 0.00 3.69
145 146 6.886459 AGCAGCTATTTTTCATTGTTAGGAGA 59.114 34.615 0.00 0.00 0.00 3.71
146 147 7.394359 AGCAGCTATTTTTCATTGTTAGGAGAA 59.606 33.333 0.00 0.00 0.00 2.87
147 148 8.193438 GCAGCTATTTTTCATTGTTAGGAGAAT 58.807 33.333 0.00 0.00 0.00 2.40
148 149 9.512435 CAGCTATTTTTCATTGTTAGGAGAATG 57.488 33.333 0.00 0.00 37.75 2.67
149 150 9.247861 AGCTATTTTTCATTGTTAGGAGAATGT 57.752 29.630 0.00 0.00 37.67 2.71
150 151 9.860898 GCTATTTTTCATTGTTAGGAGAATGTT 57.139 29.630 0.00 0.00 37.67 2.71
157 158 9.625747 TTCATTGTTAGGAGAATGTTATATGCA 57.374 29.630 0.00 0.00 37.67 3.96
158 159 9.056005 TCATTGTTAGGAGAATGTTATATGCAC 57.944 33.333 0.00 0.00 37.67 4.57
159 160 8.839343 CATTGTTAGGAGAATGTTATATGCACA 58.161 33.333 0.00 0.00 33.21 4.57
160 161 8.800370 TTGTTAGGAGAATGTTATATGCACAA 57.200 30.769 0.00 0.00 0.00 3.33
161 162 8.208718 TGTTAGGAGAATGTTATATGCACAAC 57.791 34.615 0.00 0.00 0.00 3.32
162 163 8.046708 TGTTAGGAGAATGTTATATGCACAACT 58.953 33.333 0.00 0.00 0.00 3.16
163 164 8.893727 GTTAGGAGAATGTTATATGCACAACTT 58.106 33.333 0.00 0.00 0.00 2.66
164 165 7.559590 AGGAGAATGTTATATGCACAACTTC 57.440 36.000 0.00 0.98 0.00 3.01
165 166 7.112122 AGGAGAATGTTATATGCACAACTTCA 58.888 34.615 0.00 0.00 0.00 3.02
166 167 7.611467 AGGAGAATGTTATATGCACAACTTCAA 59.389 33.333 0.00 0.00 0.00 2.69
167 168 8.408601 GGAGAATGTTATATGCACAACTTCAAT 58.591 33.333 0.00 0.00 0.00 2.57
168 169 9.793252 GAGAATGTTATATGCACAACTTCAATT 57.207 29.630 0.00 0.00 0.00 2.32
169 170 9.577110 AGAATGTTATATGCACAACTTCAATTG 57.423 29.630 0.00 0.00 35.59 2.32
170 171 9.571810 GAATGTTATATGCACAACTTCAATTGA 57.428 29.630 3.38 3.38 33.57 2.57
173 174 9.926158 TGTTATATGCACAACTTCAATTGATTT 57.074 25.926 9.40 3.00 33.57 2.17
175 176 9.585099 TTATATGCACAACTTCAATTGATTTCC 57.415 29.630 9.40 0.00 33.57 3.13
176 177 5.534207 TGCACAACTTCAATTGATTTCCT 57.466 34.783 9.40 0.00 33.57 3.36
177 178 6.647334 TGCACAACTTCAATTGATTTCCTA 57.353 33.333 9.40 0.00 33.57 2.94
178 179 7.048629 TGCACAACTTCAATTGATTTCCTAA 57.951 32.000 9.40 0.00 33.57 2.69
179 180 6.922957 TGCACAACTTCAATTGATTTCCTAAC 59.077 34.615 9.40 0.00 33.57 2.34
180 181 7.147976 GCACAACTTCAATTGATTTCCTAACT 58.852 34.615 9.40 0.00 33.57 2.24
181 182 7.653311 GCACAACTTCAATTGATTTCCTAACTT 59.347 33.333 9.40 0.00 33.57 2.66
182 183 9.533253 CACAACTTCAATTGATTTCCTAACTTT 57.467 29.630 9.40 0.00 33.57 2.66
220 221 9.896645 ACCTGCATTATAGGAGAATGTTATATG 57.103 33.333 0.00 0.00 38.71 1.78
221 222 8.834465 CCTGCATTATAGGAGAATGTTATATGC 58.166 37.037 0.00 0.00 37.52 3.14
246 247 5.707298 ACCTCATCCTTGTTACACTTGATTG 59.293 40.000 0.00 0.00 0.00 2.67
251 252 5.771469 TCCTTGTTACACTTGATTGCATTG 58.229 37.500 0.00 0.00 0.00 2.82
428 429 2.717639 AGTTCTTGTTGCAGTCCAGT 57.282 45.000 0.00 0.00 0.00 4.00
444 446 2.167693 TCCAGTAGGTATTGCTTGTCGG 59.832 50.000 0.00 0.00 35.89 4.79
594 597 7.284074 TGAAATGTTTAGGACTTGTGGAAGTA 58.716 34.615 0.00 0.00 42.80 2.24
791 795 3.879295 GCCATGCTTCTTTCATGTAGCTA 59.121 43.478 0.00 0.00 39.60 3.32
997 1005 6.658816 TGCATCTTTCTTTAAATGTCAGGCTA 59.341 34.615 0.00 0.00 0.00 3.93
1218 1226 1.548269 CTTGAGAAGGAGAGGCGAGTT 59.452 52.381 0.00 0.00 0.00 3.01
1273 1281 4.840680 TCAAGAAGAAATCAGAGGAGACCA 59.159 41.667 0.00 0.00 0.00 4.02
1302 1310 1.374252 CGCCGCAGAGTACCAGTTT 60.374 57.895 0.00 0.00 0.00 2.66
1349 1378 0.299003 GCTAGATTTGCGCGTCTCAC 59.701 55.000 8.43 4.04 0.00 3.51
1466 1496 5.652014 AGTTTCTTTGACTGGACATGTGAAA 59.348 36.000 1.15 0.23 0.00 2.69
1559 1589 7.712204 TGAACATGGTGTACTGATACTAAGA 57.288 36.000 0.00 0.00 32.00 2.10
1888 1953 6.553476 AGCCCAAGAACTAACATTAAAAGGTT 59.447 34.615 0.00 0.00 36.77 3.50
1967 2032 6.319048 ACAACTGATTTGGACTGATCCTAT 57.681 37.500 0.00 0.00 46.43 2.57
1971 2036 5.190528 ACTGATTTGGACTGATCCTATGTGT 59.809 40.000 0.00 0.00 46.43 3.72
2062 2127 7.365117 GCCTAGGCTCATTAGTAATGACCATAT 60.365 40.741 27.17 18.36 42.69 1.78
2243 2308 6.022315 ACCAAAATGGGGAGTCATAATTGAA 58.978 36.000 0.87 0.00 43.37 2.69
2262 2327 7.956420 ATTGAACGTATTTCTTGTAGTGTCA 57.044 32.000 0.00 0.00 34.97 3.58
2263 2328 7.773864 TTGAACGTATTTCTTGTAGTGTCAA 57.226 32.000 0.00 0.00 34.97 3.18
2264 2329 7.773864 TGAACGTATTTCTTGTAGTGTCAAA 57.226 32.000 0.00 0.00 34.97 2.69
2265 2330 7.623770 TGAACGTATTTCTTGTAGTGTCAAAC 58.376 34.615 0.00 0.00 34.97 2.93
2266 2331 7.493320 TGAACGTATTTCTTGTAGTGTCAAACT 59.507 33.333 0.00 0.00 37.75 2.66
2267 2332 7.404139 ACGTATTTCTTGTAGTGTCAAACTC 57.596 36.000 0.00 0.00 40.56 3.01
2268 2333 7.208080 ACGTATTTCTTGTAGTGTCAAACTCT 58.792 34.615 0.00 0.00 40.56 3.24
2269 2334 8.355169 ACGTATTTCTTGTAGTGTCAAACTCTA 58.645 33.333 0.00 0.00 40.56 2.43
2270 2335 8.636843 CGTATTTCTTGTAGTGTCAAACTCTAC 58.363 37.037 10.76 10.76 42.42 2.59
2271 2336 9.472361 GTATTTCTTGTAGTGTCAAACTCTACA 57.528 33.333 14.63 14.63 46.86 2.74
2274 2339 4.252971 TGTAGTGTCAAACTCTACAGCC 57.747 45.455 14.63 0.00 44.99 4.85
2275 2340 3.895656 TGTAGTGTCAAACTCTACAGCCT 59.104 43.478 14.63 0.00 44.99 4.58
2276 2341 4.344102 TGTAGTGTCAAACTCTACAGCCTT 59.656 41.667 14.63 0.00 44.99 4.35
2277 2342 3.733337 AGTGTCAAACTCTACAGCCTTG 58.267 45.455 0.00 0.00 31.64 3.61
2278 2343 3.134804 AGTGTCAAACTCTACAGCCTTGT 59.865 43.478 0.00 0.00 36.40 3.16
2279 2344 3.495001 GTGTCAAACTCTACAGCCTTGTC 59.505 47.826 0.00 0.00 38.76 3.18
2280 2345 3.067833 GTCAAACTCTACAGCCTTGTCC 58.932 50.000 0.00 0.00 38.76 4.02
2281 2346 2.038557 TCAAACTCTACAGCCTTGTCCC 59.961 50.000 0.00 0.00 38.76 4.46
2282 2347 2.031495 AACTCTACAGCCTTGTCCCT 57.969 50.000 0.00 0.00 38.76 4.20
2283 2348 2.031495 ACTCTACAGCCTTGTCCCTT 57.969 50.000 0.00 0.00 38.76 3.95
2284 2349 1.903183 ACTCTACAGCCTTGTCCCTTC 59.097 52.381 0.00 0.00 38.76 3.46
2285 2350 1.208293 CTCTACAGCCTTGTCCCTTCC 59.792 57.143 0.00 0.00 38.76 3.46
2286 2351 1.203313 TCTACAGCCTTGTCCCTTCCT 60.203 52.381 0.00 0.00 38.76 3.36
2287 2352 1.630878 CTACAGCCTTGTCCCTTCCTT 59.369 52.381 0.00 0.00 38.76 3.36
2288 2353 0.853530 ACAGCCTTGTCCCTTCCTTT 59.146 50.000 0.00 0.00 29.46 3.11
2289 2354 1.202940 ACAGCCTTGTCCCTTCCTTTC 60.203 52.381 0.00 0.00 29.46 2.62
2290 2355 0.405973 AGCCTTGTCCCTTCCTTTCC 59.594 55.000 0.00 0.00 0.00 3.13
2291 2356 0.405973 GCCTTGTCCCTTCCTTTCCT 59.594 55.000 0.00 0.00 0.00 3.36
2292 2357 1.203063 GCCTTGTCCCTTCCTTTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
2293 2358 2.756576 GCCTTGTCCCTTCCTTTCCTTT 60.757 50.000 0.00 0.00 0.00 3.11
2294 2359 3.576861 CCTTGTCCCTTCCTTTCCTTTT 58.423 45.455 0.00 0.00 0.00 2.27
2295 2360 3.967326 CCTTGTCCCTTCCTTTCCTTTTT 59.033 43.478 0.00 0.00 0.00 1.94
2296 2361 4.202253 CCTTGTCCCTTCCTTTCCTTTTTG 60.202 45.833 0.00 0.00 0.00 2.44
2297 2362 4.258457 TGTCCCTTCCTTTCCTTTTTGA 57.742 40.909 0.00 0.00 0.00 2.69
2298 2363 4.615513 TGTCCCTTCCTTTCCTTTTTGAA 58.384 39.130 0.00 0.00 0.00 2.69
2299 2364 4.404394 TGTCCCTTCCTTTCCTTTTTGAAC 59.596 41.667 0.00 0.00 0.00 3.18
2300 2365 4.649674 GTCCCTTCCTTTCCTTTTTGAACT 59.350 41.667 0.00 0.00 0.00 3.01
2301 2366 5.831525 GTCCCTTCCTTTCCTTTTTGAACTA 59.168 40.000 0.00 0.00 0.00 2.24
2302 2367 6.016192 GTCCCTTCCTTTCCTTTTTGAACTAG 60.016 42.308 0.00 0.00 0.00 2.57
2303 2368 5.833667 CCCTTCCTTTCCTTTTTGAACTAGT 59.166 40.000 0.00 0.00 0.00 2.57
2304 2369 7.002276 CCCTTCCTTTCCTTTTTGAACTAGTA 58.998 38.462 0.00 0.00 0.00 1.82
2305 2370 7.040617 CCCTTCCTTTCCTTTTTGAACTAGTAC 60.041 40.741 0.00 0.00 0.00 2.73
2306 2371 7.720074 CCTTCCTTTCCTTTTTGAACTAGTACT 59.280 37.037 0.00 0.00 0.00 2.73
2307 2372 9.121658 CTTCCTTTCCTTTTTGAACTAGTACTT 57.878 33.333 0.00 0.00 0.00 2.24
2308 2373 9.470399 TTCCTTTCCTTTTTGAACTAGTACTTT 57.530 29.630 0.00 0.00 0.00 2.66
2309 2374 9.117183 TCCTTTCCTTTTTGAACTAGTACTTTC 57.883 33.333 0.00 0.00 0.00 2.62
2310 2375 8.068380 CCTTTCCTTTTTGAACTAGTACTTTCG 58.932 37.037 0.00 0.00 0.00 3.46
2311 2376 6.535274 TCCTTTTTGAACTAGTACTTTCGC 57.465 37.500 0.00 0.00 0.00 4.70
2312 2377 5.467735 TCCTTTTTGAACTAGTACTTTCGCC 59.532 40.000 0.00 0.00 0.00 5.54
2313 2378 5.334646 CCTTTTTGAACTAGTACTTTCGCCC 60.335 44.000 0.00 0.00 0.00 6.13
2314 2379 3.323751 TTGAACTAGTACTTTCGCCCC 57.676 47.619 0.00 0.00 0.00 5.80
2315 2380 2.532843 TGAACTAGTACTTTCGCCCCT 58.467 47.619 0.00 0.00 0.00 4.79
2316 2381 2.901839 TGAACTAGTACTTTCGCCCCTT 59.098 45.455 0.00 0.00 0.00 3.95
2317 2382 3.056322 TGAACTAGTACTTTCGCCCCTTC 60.056 47.826 0.00 0.00 0.00 3.46
2318 2383 1.829849 ACTAGTACTTTCGCCCCTTCC 59.170 52.381 0.00 0.00 0.00 3.46
2319 2384 2.108970 CTAGTACTTTCGCCCCTTCCT 58.891 52.381 0.00 0.00 0.00 3.36
2320 2385 1.359168 AGTACTTTCGCCCCTTCCTT 58.641 50.000 0.00 0.00 0.00 3.36
2321 2386 1.703513 AGTACTTTCGCCCCTTCCTTT 59.296 47.619 0.00 0.00 0.00 3.11
2322 2387 2.082231 GTACTTTCGCCCCTTCCTTTC 58.918 52.381 0.00 0.00 0.00 2.62
2323 2388 0.251209 ACTTTCGCCCCTTCCTTTCC 60.251 55.000 0.00 0.00 0.00 3.13
2324 2389 0.038310 CTTTCGCCCCTTCCTTTCCT 59.962 55.000 0.00 0.00 0.00 3.36
2325 2390 0.037734 TTTCGCCCCTTCCTTTCCTC 59.962 55.000 0.00 0.00 0.00 3.71
2326 2391 0.840722 TTCGCCCCTTCCTTTCCTCT 60.841 55.000 0.00 0.00 0.00 3.69
2327 2392 0.840722 TCGCCCCTTCCTTTCCTCTT 60.841 55.000 0.00 0.00 0.00 2.85
2328 2393 0.038310 CGCCCCTTCCTTTCCTCTTT 59.962 55.000 0.00 0.00 0.00 2.52
2329 2394 1.550327 GCCCCTTCCTTTCCTCTTTG 58.450 55.000 0.00 0.00 0.00 2.77
2330 2395 1.075536 GCCCCTTCCTTTCCTCTTTGA 59.924 52.381 0.00 0.00 0.00 2.69
2331 2396 2.490902 GCCCCTTCCTTTCCTCTTTGAA 60.491 50.000 0.00 0.00 0.00 2.69
2332 2397 3.157881 CCCCTTCCTTTCCTCTTTGAAC 58.842 50.000 0.00 0.00 0.00 3.18
2333 2398 3.157881 CCCTTCCTTTCCTCTTTGAACC 58.842 50.000 0.00 0.00 0.00 3.62
2334 2399 3.436470 CCCTTCCTTTCCTCTTTGAACCA 60.436 47.826 0.00 0.00 0.00 3.67
2335 2400 3.570125 CCTTCCTTTCCTCTTTGAACCAC 59.430 47.826 0.00 0.00 0.00 4.16
2336 2401 2.846193 TCCTTTCCTCTTTGAACCACG 58.154 47.619 0.00 0.00 0.00 4.94
2337 2402 2.171870 TCCTTTCCTCTTTGAACCACGT 59.828 45.455 0.00 0.00 0.00 4.49
2338 2403 2.548480 CCTTTCCTCTTTGAACCACGTC 59.452 50.000 0.00 0.00 0.00 4.34
2339 2404 2.249844 TTCCTCTTTGAACCACGTCC 57.750 50.000 0.00 0.00 0.00 4.79
2340 2405 1.420430 TCCTCTTTGAACCACGTCCT 58.580 50.000 0.00 0.00 0.00 3.85
2341 2406 2.600790 TCCTCTTTGAACCACGTCCTA 58.399 47.619 0.00 0.00 0.00 2.94
2342 2407 2.561419 TCCTCTTTGAACCACGTCCTAG 59.439 50.000 0.00 0.00 0.00 3.02
2343 2408 2.561419 CCTCTTTGAACCACGTCCTAGA 59.439 50.000 0.00 0.00 0.00 2.43
2344 2409 3.195825 CCTCTTTGAACCACGTCCTAGAT 59.804 47.826 0.00 0.00 0.00 1.98
2345 2410 4.322801 CCTCTTTGAACCACGTCCTAGATT 60.323 45.833 0.00 0.00 0.00 2.40
2346 2411 5.223449 TCTTTGAACCACGTCCTAGATTT 57.777 39.130 0.00 0.00 0.00 2.17
2347 2412 6.349243 TCTTTGAACCACGTCCTAGATTTA 57.651 37.500 0.00 0.00 0.00 1.40
2348 2413 6.942976 TCTTTGAACCACGTCCTAGATTTAT 58.057 36.000 0.00 0.00 0.00 1.40
2349 2414 6.816640 TCTTTGAACCACGTCCTAGATTTATG 59.183 38.462 0.00 0.00 0.00 1.90
2350 2415 5.670792 TGAACCACGTCCTAGATTTATGT 57.329 39.130 0.00 0.00 0.00 2.29
2351 2416 5.416083 TGAACCACGTCCTAGATTTATGTG 58.584 41.667 0.00 0.00 0.00 3.21
2352 2417 5.186215 TGAACCACGTCCTAGATTTATGTGA 59.814 40.000 0.00 0.00 0.00 3.58
2353 2418 5.871396 ACCACGTCCTAGATTTATGTGAT 57.129 39.130 0.00 0.00 0.00 3.06
2354 2419 6.971726 ACCACGTCCTAGATTTATGTGATA 57.028 37.500 0.00 0.00 0.00 2.15
2355 2420 6.746120 ACCACGTCCTAGATTTATGTGATAC 58.254 40.000 0.00 0.00 0.00 2.24
2356 2421 6.322969 ACCACGTCCTAGATTTATGTGATACA 59.677 38.462 0.00 0.00 0.00 2.29
2357 2422 7.147794 ACCACGTCCTAGATTTATGTGATACAA 60.148 37.037 0.00 0.00 0.00 2.41
2358 2423 7.169308 CCACGTCCTAGATTTATGTGATACAAC 59.831 40.741 0.00 0.00 0.00 3.32
2359 2424 7.921214 CACGTCCTAGATTTATGTGATACAACT 59.079 37.037 0.00 0.00 0.00 3.16
2360 2425 8.475639 ACGTCCTAGATTTATGTGATACAACTT 58.524 33.333 0.00 0.00 0.00 2.66
2361 2426 9.314321 CGTCCTAGATTTATGTGATACAACTTT 57.686 33.333 0.00 0.00 0.00 2.66
2363 2428 9.832445 TCCTAGATTTATGTGATACAACTTTCC 57.168 33.333 0.00 0.00 0.00 3.13
2364 2429 9.057089 CCTAGATTTATGTGATACAACTTTCCC 57.943 37.037 0.00 0.00 0.00 3.97
2365 2430 7.881775 AGATTTATGTGATACAACTTTCCCC 57.118 36.000 0.00 0.00 0.00 4.81
2366 2431 7.410174 AGATTTATGTGATACAACTTTCCCCA 58.590 34.615 0.00 0.00 0.00 4.96
2367 2432 6.827586 TTTATGTGATACAACTTTCCCCAC 57.172 37.500 0.00 0.00 0.00 4.61
2368 2433 4.657814 ATGTGATACAACTTTCCCCACT 57.342 40.909 0.00 0.00 0.00 4.00
2369 2434 5.772393 ATGTGATACAACTTTCCCCACTA 57.228 39.130 0.00 0.00 0.00 2.74
2370 2435 4.901868 TGTGATACAACTTTCCCCACTAC 58.098 43.478 0.00 0.00 0.00 2.73
2371 2436 4.595781 TGTGATACAACTTTCCCCACTACT 59.404 41.667 0.00 0.00 0.00 2.57
2372 2437 5.072600 TGTGATACAACTTTCCCCACTACTT 59.927 40.000 0.00 0.00 0.00 2.24
2373 2438 6.002082 GTGATACAACTTTCCCCACTACTTT 58.998 40.000 0.00 0.00 0.00 2.66
2374 2439 6.148976 GTGATACAACTTTCCCCACTACTTTC 59.851 42.308 0.00 0.00 0.00 2.62
2375 2440 3.828921 ACAACTTTCCCCACTACTTTCC 58.171 45.455 0.00 0.00 0.00 3.13
2376 2441 3.154710 CAACTTTCCCCACTACTTTCCC 58.845 50.000 0.00 0.00 0.00 3.97
2377 2442 1.709115 ACTTTCCCCACTACTTTCCCC 59.291 52.381 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.653020 TCCATAGTGTTGACTAAATCTGCAT 58.347 36.000 0.00 0.00 38.21 3.96
1 2 6.048732 TCCATAGTGTTGACTAAATCTGCA 57.951 37.500 0.00 0.00 38.21 4.41
2 3 6.763135 TGATCCATAGTGTTGACTAAATCTGC 59.237 38.462 0.00 0.00 38.21 4.26
3 4 7.984050 ACTGATCCATAGTGTTGACTAAATCTG 59.016 37.037 0.00 0.00 38.21 2.90
4 5 8.083828 ACTGATCCATAGTGTTGACTAAATCT 57.916 34.615 0.00 0.00 38.21 2.40
5 6 9.988815 ATACTGATCCATAGTGTTGACTAAATC 57.011 33.333 0.00 0.00 38.21 2.17
10 11 8.982723 ACTAAATACTGATCCATAGTGTTGACT 58.017 33.333 0.00 0.00 31.19 3.41
11 12 9.601217 AACTAAATACTGATCCATAGTGTTGAC 57.399 33.333 0.00 0.00 31.19 3.18
20 21 9.499479 CTGCATCTAAACTAAATACTGATCCAT 57.501 33.333 0.00 0.00 0.00 3.41
21 22 8.704668 TCTGCATCTAAACTAAATACTGATCCA 58.295 33.333 0.00 0.00 0.00 3.41
22 23 9.717942 ATCTGCATCTAAACTAAATACTGATCC 57.282 33.333 0.00 0.00 0.00 3.36
30 31 9.890629 TTGACTGTATCTGCATCTAAACTAAAT 57.109 29.630 0.00 0.00 0.00 1.40
31 32 9.151471 GTTGACTGTATCTGCATCTAAACTAAA 57.849 33.333 0.00 0.00 0.00 1.85
32 33 8.311109 TGTTGACTGTATCTGCATCTAAACTAA 58.689 33.333 0.00 0.00 0.00 2.24
33 34 7.759886 GTGTTGACTGTATCTGCATCTAAACTA 59.240 37.037 0.00 0.00 0.00 2.24
34 35 6.591834 GTGTTGACTGTATCTGCATCTAAACT 59.408 38.462 0.00 0.00 0.00 2.66
35 36 6.591834 AGTGTTGACTGTATCTGCATCTAAAC 59.408 38.462 0.00 0.00 0.00 2.01
36 37 6.701340 AGTGTTGACTGTATCTGCATCTAAA 58.299 36.000 0.00 0.00 0.00 1.85
37 38 6.286240 AGTGTTGACTGTATCTGCATCTAA 57.714 37.500 0.00 0.00 0.00 2.10
38 39 5.921962 AGTGTTGACTGTATCTGCATCTA 57.078 39.130 0.00 0.00 0.00 1.98
39 40 4.815533 AGTGTTGACTGTATCTGCATCT 57.184 40.909 0.00 0.00 0.00 2.90
40 41 5.046529 CCTAGTGTTGACTGTATCTGCATC 58.953 45.833 0.00 0.00 33.21 3.91
41 42 4.467795 ACCTAGTGTTGACTGTATCTGCAT 59.532 41.667 0.00 0.00 33.21 3.96
42 43 3.832490 ACCTAGTGTTGACTGTATCTGCA 59.168 43.478 0.00 0.00 33.21 4.41
43 44 4.457834 ACCTAGTGTTGACTGTATCTGC 57.542 45.455 0.00 0.00 33.21 4.26
44 45 7.334844 TGATACCTAGTGTTGACTGTATCTG 57.665 40.000 0.00 0.00 38.14 2.90
45 46 7.956328 TTGATACCTAGTGTTGACTGTATCT 57.044 36.000 0.00 0.00 38.14 1.98
46 47 9.680315 GTATTGATACCTAGTGTTGACTGTATC 57.320 37.037 0.00 0.00 37.97 2.24
47 48 9.197306 TGTATTGATACCTAGTGTTGACTGTAT 57.803 33.333 0.00 0.00 31.39 2.29
48 49 8.584063 TGTATTGATACCTAGTGTTGACTGTA 57.416 34.615 0.00 0.00 31.39 2.74
49 50 7.476540 TGTATTGATACCTAGTGTTGACTGT 57.523 36.000 0.00 0.00 31.39 3.55
50 51 7.981789 ACATGTATTGATACCTAGTGTTGACTG 59.018 37.037 0.00 0.00 31.39 3.51
51 52 8.079211 ACATGTATTGATACCTAGTGTTGACT 57.921 34.615 0.00 0.00 32.75 3.41
52 53 8.718102 AACATGTATTGATACCTAGTGTTGAC 57.282 34.615 0.00 0.00 32.33 3.18
53 54 9.161629 CAAACATGTATTGATACCTAGTGTTGA 57.838 33.333 0.00 0.00 30.98 3.18
54 55 7.910162 GCAAACATGTATTGATACCTAGTGTTG 59.090 37.037 18.78 7.77 30.98 3.33
55 56 7.201609 CGCAAACATGTATTGATACCTAGTGTT 60.202 37.037 18.78 3.31 31.38 3.32
56 57 6.257849 CGCAAACATGTATTGATACCTAGTGT 59.742 38.462 18.78 0.00 32.33 3.55
57 58 6.478673 TCGCAAACATGTATTGATACCTAGTG 59.521 38.462 18.78 3.10 32.33 2.74
58 59 6.578944 TCGCAAACATGTATTGATACCTAGT 58.421 36.000 18.78 0.00 32.33 2.57
59 60 7.477144 TTCGCAAACATGTATTGATACCTAG 57.523 36.000 18.78 0.00 32.33 3.02
60 61 7.497579 ACATTCGCAAACATGTATTGATACCTA 59.502 33.333 18.78 4.30 31.60 3.08
61 62 6.318648 ACATTCGCAAACATGTATTGATACCT 59.681 34.615 18.78 0.00 31.60 3.08
62 63 6.494842 ACATTCGCAAACATGTATTGATACC 58.505 36.000 18.78 5.88 31.60 2.73
63 64 7.969387 AACATTCGCAAACATGTATTGATAC 57.031 32.000 18.78 0.00 33.11 2.24
66 67 9.662545 CATATAACATTCGCAAACATGTATTGA 57.337 29.630 18.78 5.68 33.11 2.57
67 68 8.419435 GCATATAACATTCGCAAACATGTATTG 58.581 33.333 0.00 7.53 33.11 1.90
68 69 8.134261 TGCATATAACATTCGCAAACATGTATT 58.866 29.630 0.00 0.00 33.11 1.89
69 70 7.647228 TGCATATAACATTCGCAAACATGTAT 58.353 30.769 0.00 0.00 33.11 2.29
70 71 7.020914 TGCATATAACATTCGCAAACATGTA 57.979 32.000 0.00 0.00 33.11 2.29
71 72 5.889219 TGCATATAACATTCGCAAACATGT 58.111 33.333 0.00 0.00 35.00 3.21
72 73 6.129035 CCATGCATATAACATTCGCAAACATG 60.129 38.462 0.00 0.00 35.98 3.21
73 74 5.921976 CCATGCATATAACATTCGCAAACAT 59.078 36.000 0.00 0.00 35.98 2.71
74 75 5.163571 ACCATGCATATAACATTCGCAAACA 60.164 36.000 0.00 0.00 35.98 2.83
75 76 5.280945 ACCATGCATATAACATTCGCAAAC 58.719 37.500 0.00 0.00 35.98 2.93
76 77 5.512753 ACCATGCATATAACATTCGCAAA 57.487 34.783 0.00 0.00 35.98 3.68
77 78 5.512753 AACCATGCATATAACATTCGCAA 57.487 34.783 0.00 0.00 35.98 4.85
78 79 5.163571 ACAAACCATGCATATAACATTCGCA 60.164 36.000 0.00 0.00 36.95 5.10
79 80 5.280945 ACAAACCATGCATATAACATTCGC 58.719 37.500 0.00 0.00 0.00 4.70
80 81 9.462174 AATAACAAACCATGCATATAACATTCG 57.538 29.630 0.00 0.00 0.00 3.34
88 89 9.797642 TGAGATCTAATAACAAACCATGCATAT 57.202 29.630 0.00 0.00 0.00 1.78
89 90 9.625747 TTGAGATCTAATAACAAACCATGCATA 57.374 29.630 0.00 0.00 0.00 3.14
90 91 8.408601 GTTGAGATCTAATAACAAACCATGCAT 58.591 33.333 0.00 0.00 0.00 3.96
91 92 7.611467 AGTTGAGATCTAATAACAAACCATGCA 59.389 33.333 15.33 0.00 0.00 3.96
92 93 7.989826 AGTTGAGATCTAATAACAAACCATGC 58.010 34.615 15.33 0.00 0.00 4.06
93 94 9.994432 GAAGTTGAGATCTAATAACAAACCATG 57.006 33.333 15.33 0.00 0.00 3.66
94 95 9.739276 TGAAGTTGAGATCTAATAACAAACCAT 57.261 29.630 15.33 0.00 0.00 3.55
95 96 9.219603 CTGAAGTTGAGATCTAATAACAAACCA 57.780 33.333 15.33 8.67 0.00 3.67
96 97 8.178313 GCTGAAGTTGAGATCTAATAACAAACC 58.822 37.037 15.33 5.85 0.00 3.27
97 98 8.721478 TGCTGAAGTTGAGATCTAATAACAAAC 58.279 33.333 15.33 8.92 0.00 2.93
98 99 8.846943 TGCTGAAGTTGAGATCTAATAACAAA 57.153 30.769 15.33 4.24 0.00 2.83
99 100 7.065085 GCTGCTGAAGTTGAGATCTAATAACAA 59.935 37.037 15.33 5.11 0.00 2.83
100 101 6.536582 GCTGCTGAAGTTGAGATCTAATAACA 59.463 38.462 15.33 0.00 0.00 2.41
101 102 6.760770 AGCTGCTGAAGTTGAGATCTAATAAC 59.239 38.462 0.00 2.03 0.00 1.89
102 103 6.882656 AGCTGCTGAAGTTGAGATCTAATAA 58.117 36.000 0.00 0.00 0.00 1.40
103 104 6.477053 AGCTGCTGAAGTTGAGATCTAATA 57.523 37.500 0.00 0.00 0.00 0.98
104 105 5.356291 AGCTGCTGAAGTTGAGATCTAAT 57.644 39.130 0.00 0.00 0.00 1.73
105 106 4.815533 AGCTGCTGAAGTTGAGATCTAA 57.184 40.909 0.00 0.00 0.00 2.10
106 107 6.477053 AATAGCTGCTGAAGTTGAGATCTA 57.523 37.500 13.43 0.00 0.00 1.98
107 108 5.356291 AATAGCTGCTGAAGTTGAGATCT 57.644 39.130 13.43 0.00 0.00 2.75
108 109 6.434018 AAAATAGCTGCTGAAGTTGAGATC 57.566 37.500 13.43 0.00 0.00 2.75
109 110 6.432162 TGAAAAATAGCTGCTGAAGTTGAGAT 59.568 34.615 13.43 0.00 0.00 2.75
110 111 5.764686 TGAAAAATAGCTGCTGAAGTTGAGA 59.235 36.000 13.43 0.00 0.00 3.27
111 112 6.005583 TGAAAAATAGCTGCTGAAGTTGAG 57.994 37.500 13.43 0.00 0.00 3.02
112 113 6.579666 ATGAAAAATAGCTGCTGAAGTTGA 57.420 33.333 13.43 0.00 0.00 3.18
113 114 6.643770 ACAATGAAAAATAGCTGCTGAAGTTG 59.356 34.615 13.43 8.69 0.00 3.16
114 115 6.752168 ACAATGAAAAATAGCTGCTGAAGTT 58.248 32.000 13.43 1.23 0.00 2.66
115 116 6.336842 ACAATGAAAAATAGCTGCTGAAGT 57.663 33.333 13.43 0.00 0.00 3.01
116 117 7.487189 CCTAACAATGAAAAATAGCTGCTGAAG 59.513 37.037 13.43 0.00 0.00 3.02
117 118 7.176515 TCCTAACAATGAAAAATAGCTGCTGAA 59.823 33.333 13.43 0.00 0.00 3.02
118 119 6.658816 TCCTAACAATGAAAAATAGCTGCTGA 59.341 34.615 13.43 0.00 0.00 4.26
119 120 6.855836 TCCTAACAATGAAAAATAGCTGCTG 58.144 36.000 13.43 0.00 0.00 4.41
120 121 6.886459 TCTCCTAACAATGAAAAATAGCTGCT 59.114 34.615 7.57 7.57 0.00 4.24
121 122 7.088589 TCTCCTAACAATGAAAAATAGCTGC 57.911 36.000 0.00 0.00 0.00 5.25
122 123 9.512435 CATTCTCCTAACAATGAAAAATAGCTG 57.488 33.333 0.00 0.00 32.56 4.24
123 124 9.247861 ACATTCTCCTAACAATGAAAAATAGCT 57.752 29.630 0.00 0.00 34.60 3.32
124 125 9.860898 AACATTCTCCTAACAATGAAAAATAGC 57.139 29.630 0.00 0.00 34.60 2.97
131 132 9.625747 TGCATATAACATTCTCCTAACAATGAA 57.374 29.630 0.00 0.00 34.60 2.57
132 133 9.056005 GTGCATATAACATTCTCCTAACAATGA 57.944 33.333 0.00 0.00 34.60 2.57
133 134 8.839343 TGTGCATATAACATTCTCCTAACAATG 58.161 33.333 0.00 0.00 36.28 2.82
134 135 8.978874 TGTGCATATAACATTCTCCTAACAAT 57.021 30.769 0.00 0.00 0.00 2.71
135 136 8.673711 GTTGTGCATATAACATTCTCCTAACAA 58.326 33.333 0.00 0.00 0.00 2.83
136 137 8.046708 AGTTGTGCATATAACATTCTCCTAACA 58.953 33.333 12.11 0.00 31.08 2.41
137 138 8.438676 AGTTGTGCATATAACATTCTCCTAAC 57.561 34.615 12.11 0.00 31.08 2.34
138 139 9.109393 GAAGTTGTGCATATAACATTCTCCTAA 57.891 33.333 12.11 0.00 31.08 2.69
139 140 8.264347 TGAAGTTGTGCATATAACATTCTCCTA 58.736 33.333 12.11 0.00 31.08 2.94
140 141 7.112122 TGAAGTTGTGCATATAACATTCTCCT 58.888 34.615 12.11 0.00 31.08 3.69
141 142 7.320443 TGAAGTTGTGCATATAACATTCTCC 57.680 36.000 12.11 0.00 31.08 3.71
142 143 9.793252 AATTGAAGTTGTGCATATAACATTCTC 57.207 29.630 12.11 5.62 31.08 2.87
143 144 9.577110 CAATTGAAGTTGTGCATATAACATTCT 57.423 29.630 0.00 0.00 31.08 2.40
144 145 9.571810 TCAATTGAAGTTGTGCATATAACATTC 57.428 29.630 5.45 11.91 31.08 2.67
147 148 9.926158 AAATCAATTGAAGTTGTGCATATAACA 57.074 25.926 13.09 0.00 31.08 2.41
149 150 9.585099 GGAAATCAATTGAAGTTGTGCATATAA 57.415 29.630 13.09 0.00 0.00 0.98
150 151 8.970020 AGGAAATCAATTGAAGTTGTGCATATA 58.030 29.630 13.09 0.00 0.00 0.86
151 152 7.844009 AGGAAATCAATTGAAGTTGTGCATAT 58.156 30.769 13.09 0.00 0.00 1.78
152 153 7.230849 AGGAAATCAATTGAAGTTGTGCATA 57.769 32.000 13.09 0.00 0.00 3.14
153 154 6.105397 AGGAAATCAATTGAAGTTGTGCAT 57.895 33.333 13.09 0.00 0.00 3.96
154 155 5.534207 AGGAAATCAATTGAAGTTGTGCA 57.466 34.783 13.09 0.00 0.00 4.57
155 156 7.147976 AGTTAGGAAATCAATTGAAGTTGTGC 58.852 34.615 13.09 0.00 0.00 4.57
156 157 9.533253 AAAGTTAGGAAATCAATTGAAGTTGTG 57.467 29.630 13.09 0.00 0.00 3.33
194 195 9.896645 CATATAACATTCTCCTATAATGCAGGT 57.103 33.333 0.00 0.00 37.77 4.00
195 196 8.834465 GCATATAACATTCTCCTATAATGCAGG 58.166 37.037 0.00 0.00 37.77 4.85
196 197 9.387257 TGCATATAACATTCTCCTATAATGCAG 57.613 33.333 0.00 0.00 37.77 4.41
197 198 9.166173 GTGCATATAACATTCTCCTATAATGCA 57.834 33.333 0.00 0.00 37.77 3.96
198 199 8.616076 GGTGCATATAACATTCTCCTATAATGC 58.384 37.037 0.00 0.00 37.77 3.56
199 200 9.896645 AGGTGCATATAACATTCTCCTATAATG 57.103 33.333 0.00 0.00 39.68 1.90
201 202 9.100197 TGAGGTGCATATAACATTCTCCTATAA 57.900 33.333 0.00 0.00 0.00 0.98
202 203 8.664669 TGAGGTGCATATAACATTCTCCTATA 57.335 34.615 0.00 0.00 0.00 1.31
203 204 7.559335 TGAGGTGCATATAACATTCTCCTAT 57.441 36.000 0.00 0.00 0.00 2.57
204 205 6.994421 TGAGGTGCATATAACATTCTCCTA 57.006 37.500 0.00 0.00 0.00 2.94
205 206 5.894298 TGAGGTGCATATAACATTCTCCT 57.106 39.130 0.00 0.00 0.00 3.69
206 207 5.645497 GGATGAGGTGCATATAACATTCTCC 59.355 44.000 0.00 0.00 37.34 3.71
207 208 6.471146 AGGATGAGGTGCATATAACATTCTC 58.529 40.000 0.00 0.00 37.34 2.87
208 209 6.445451 AGGATGAGGTGCATATAACATTCT 57.555 37.500 0.00 0.00 37.34 2.40
209 210 6.488006 ACAAGGATGAGGTGCATATAACATTC 59.512 38.462 0.00 0.00 37.34 2.67
210 211 6.367983 ACAAGGATGAGGTGCATATAACATT 58.632 36.000 0.00 0.00 37.34 2.71
211 212 5.945310 ACAAGGATGAGGTGCATATAACAT 58.055 37.500 0.00 0.00 37.34 2.71
212 213 5.372343 ACAAGGATGAGGTGCATATAACA 57.628 39.130 0.00 0.00 37.34 2.41
213 214 6.765989 TGTAACAAGGATGAGGTGCATATAAC 59.234 38.462 0.00 0.00 37.34 1.89
214 215 6.765989 GTGTAACAAGGATGAGGTGCATATAA 59.234 38.462 0.00 0.00 34.96 0.98
215 216 6.099701 AGTGTAACAAGGATGAGGTGCATATA 59.900 38.462 0.00 0.00 41.43 0.86
216 217 5.104360 AGTGTAACAAGGATGAGGTGCATAT 60.104 40.000 0.00 0.00 41.43 1.78
217 218 4.225042 AGTGTAACAAGGATGAGGTGCATA 59.775 41.667 0.00 0.00 41.43 3.14
218 219 3.009473 AGTGTAACAAGGATGAGGTGCAT 59.991 43.478 0.00 0.00 41.43 3.96
219 220 2.371841 AGTGTAACAAGGATGAGGTGCA 59.628 45.455 0.00 0.00 41.43 4.57
220 221 3.059352 AGTGTAACAAGGATGAGGTGC 57.941 47.619 0.00 0.00 41.43 5.01
221 222 4.641396 TCAAGTGTAACAAGGATGAGGTG 58.359 43.478 0.00 0.00 41.43 4.00
246 247 4.656041 GTCAAGCAGAAGTCATACAATGC 58.344 43.478 0.00 0.00 0.00 3.56
251 252 3.232213 TCCGTCAAGCAGAAGTCATAC 57.768 47.619 0.00 0.00 0.00 2.39
322 323 8.434392 AGAGGACTGGTACAAACAAACTATAAA 58.566 33.333 0.00 0.00 38.70 1.40
428 429 2.093869 GTCCACCGACAAGCAATACCTA 60.094 50.000 0.00 0.00 38.99 3.08
444 446 6.311690 GCTCTCTCTTAATTAACAGTGTCCAC 59.688 42.308 0.00 0.00 0.00 4.02
940 948 7.215789 TGTCATTGCAGTTGGTTTTGAATAAT 58.784 30.769 0.00 0.00 0.00 1.28
948 956 3.132646 ACACATGTCATTGCAGTTGGTTT 59.867 39.130 0.00 0.00 0.00 3.27
997 1005 6.418057 TTGTTCCATAGCTTTTTCCATGTT 57.582 33.333 0.00 0.00 0.00 2.71
1218 1226 0.108472 CCTCTCGCATCAACTCAGCA 60.108 55.000 0.00 0.00 0.00 4.41
1302 1310 2.884639 GGCCTCAACTCTTTGCAGTAAA 59.115 45.455 0.00 0.00 32.17 2.01
1349 1378 6.040878 ACTATTTTACCTTCGAACAGATCCG 58.959 40.000 0.00 0.00 0.00 4.18
1466 1496 4.785301 CCAATCTCTGGTCCATATTGTGT 58.215 43.478 15.38 0.00 40.78 3.72
1559 1589 6.895204 ACCAACCAAAATAACATAGCCAGTAT 59.105 34.615 0.00 0.00 0.00 2.12
1888 1953 8.571336 CATTTTTACATTTATTTTTGGGCCACA 58.429 29.630 5.23 0.00 0.00 4.17
1967 2032 6.593268 AAAAATGATGACATGGATGACACA 57.407 33.333 0.00 0.00 35.49 3.72
2062 2127 6.783162 TCGTCGTTAAATCTTTGACCAAAAA 58.217 32.000 0.00 0.00 0.00 1.94
2243 2308 7.208080 AGAGTTTGACACTACAAGAAATACGT 58.792 34.615 0.00 0.00 35.01 3.57
2262 2327 2.339769 AGGGACAAGGCTGTAGAGTTT 58.660 47.619 0.00 0.00 35.30 2.66
2263 2328 2.031495 AGGGACAAGGCTGTAGAGTT 57.969 50.000 0.00 0.00 35.30 3.01
2264 2329 1.903183 GAAGGGACAAGGCTGTAGAGT 59.097 52.381 0.00 0.00 35.30 3.24
2265 2330 1.208293 GGAAGGGACAAGGCTGTAGAG 59.792 57.143 0.00 0.00 35.30 2.43
2266 2331 1.203313 AGGAAGGGACAAGGCTGTAGA 60.203 52.381 0.00 0.00 35.30 2.59
2267 2332 1.280457 AGGAAGGGACAAGGCTGTAG 58.720 55.000 0.00 0.00 35.30 2.74
2268 2333 1.742308 AAGGAAGGGACAAGGCTGTA 58.258 50.000 0.00 0.00 35.30 2.74
2269 2334 0.853530 AAAGGAAGGGACAAGGCTGT 59.146 50.000 0.00 0.00 38.98 4.40
2270 2335 1.539157 GAAAGGAAGGGACAAGGCTG 58.461 55.000 0.00 0.00 0.00 4.85
2271 2336 0.405973 GGAAAGGAAGGGACAAGGCT 59.594 55.000 0.00 0.00 0.00 4.58
2272 2337 0.405973 AGGAAAGGAAGGGACAAGGC 59.594 55.000 0.00 0.00 0.00 4.35
2273 2338 2.980246 AAGGAAAGGAAGGGACAAGG 57.020 50.000 0.00 0.00 0.00 3.61
2274 2339 4.649218 TCAAAAAGGAAAGGAAGGGACAAG 59.351 41.667 0.00 0.00 0.00 3.16
2275 2340 4.615513 TCAAAAAGGAAAGGAAGGGACAA 58.384 39.130 0.00 0.00 0.00 3.18
2276 2341 4.258457 TCAAAAAGGAAAGGAAGGGACA 57.742 40.909 0.00 0.00 0.00 4.02
2277 2342 4.649674 AGTTCAAAAAGGAAAGGAAGGGAC 59.350 41.667 0.00 0.00 0.00 4.46
2278 2343 4.878968 AGTTCAAAAAGGAAAGGAAGGGA 58.121 39.130 0.00 0.00 0.00 4.20
2279 2344 5.833667 ACTAGTTCAAAAAGGAAAGGAAGGG 59.166 40.000 0.00 0.00 0.00 3.95
2280 2345 6.961360 ACTAGTTCAAAAAGGAAAGGAAGG 57.039 37.500 0.00 0.00 0.00 3.46
2281 2346 8.678593 AGTACTAGTTCAAAAAGGAAAGGAAG 57.321 34.615 0.00 0.00 0.00 3.46
2282 2347 9.470399 AAAGTACTAGTTCAAAAAGGAAAGGAA 57.530 29.630 0.00 0.00 0.00 3.36
2283 2348 9.117183 GAAAGTACTAGTTCAAAAAGGAAAGGA 57.883 33.333 0.00 0.00 0.00 3.36
2284 2349 8.068380 CGAAAGTACTAGTTCAAAAAGGAAAGG 58.932 37.037 0.00 0.00 0.00 3.11
2285 2350 7.586664 GCGAAAGTACTAGTTCAAAAAGGAAAG 59.413 37.037 0.00 0.00 0.00 2.62
2286 2351 7.412063 GCGAAAGTACTAGTTCAAAAAGGAAA 58.588 34.615 0.00 0.00 0.00 3.13
2287 2352 6.017687 GGCGAAAGTACTAGTTCAAAAAGGAA 60.018 38.462 0.00 0.00 0.00 3.36
2288 2353 5.467735 GGCGAAAGTACTAGTTCAAAAAGGA 59.532 40.000 0.00 0.00 0.00 3.36
2289 2354 5.334646 GGGCGAAAGTACTAGTTCAAAAAGG 60.335 44.000 0.00 0.00 0.00 3.11
2290 2355 5.334646 GGGGCGAAAGTACTAGTTCAAAAAG 60.335 44.000 0.00 0.00 0.00 2.27
2291 2356 4.516321 GGGGCGAAAGTACTAGTTCAAAAA 59.484 41.667 0.00 0.00 0.00 1.94
2292 2357 4.067192 GGGGCGAAAGTACTAGTTCAAAA 58.933 43.478 0.00 0.00 0.00 2.44
2293 2358 3.325716 AGGGGCGAAAGTACTAGTTCAAA 59.674 43.478 0.00 0.00 0.00 2.69
2294 2359 2.901839 AGGGGCGAAAGTACTAGTTCAA 59.098 45.455 0.00 0.00 0.00 2.69
2295 2360 2.532843 AGGGGCGAAAGTACTAGTTCA 58.467 47.619 0.00 0.00 0.00 3.18
2296 2361 3.519579 GAAGGGGCGAAAGTACTAGTTC 58.480 50.000 0.00 0.00 0.00 3.01
2297 2362 2.235650 GGAAGGGGCGAAAGTACTAGTT 59.764 50.000 0.00 0.00 0.00 2.24
2298 2363 1.829849 GGAAGGGGCGAAAGTACTAGT 59.170 52.381 0.00 0.00 0.00 2.57
2299 2364 2.108970 AGGAAGGGGCGAAAGTACTAG 58.891 52.381 0.00 0.00 0.00 2.57
2300 2365 2.242882 AGGAAGGGGCGAAAGTACTA 57.757 50.000 0.00 0.00 0.00 1.82
2301 2366 1.359168 AAGGAAGGGGCGAAAGTACT 58.641 50.000 0.00 0.00 0.00 2.73
2302 2367 2.082231 GAAAGGAAGGGGCGAAAGTAC 58.918 52.381 0.00 0.00 0.00 2.73
2303 2368 1.003928 GGAAAGGAAGGGGCGAAAGTA 59.996 52.381 0.00 0.00 0.00 2.24
2304 2369 0.251209 GGAAAGGAAGGGGCGAAAGT 60.251 55.000 0.00 0.00 0.00 2.66
2305 2370 0.038310 AGGAAAGGAAGGGGCGAAAG 59.962 55.000 0.00 0.00 0.00 2.62
2306 2371 0.037734 GAGGAAAGGAAGGGGCGAAA 59.962 55.000 0.00 0.00 0.00 3.46
2307 2372 0.840722 AGAGGAAAGGAAGGGGCGAA 60.841 55.000 0.00 0.00 0.00 4.70
2308 2373 0.840722 AAGAGGAAAGGAAGGGGCGA 60.841 55.000 0.00 0.00 0.00 5.54
2309 2374 0.038310 AAAGAGGAAAGGAAGGGGCG 59.962 55.000 0.00 0.00 0.00 6.13
2310 2375 1.075536 TCAAAGAGGAAAGGAAGGGGC 59.924 52.381 0.00 0.00 0.00 5.80
2311 2376 3.157881 GTTCAAAGAGGAAAGGAAGGGG 58.842 50.000 0.00 0.00 0.00 4.79
2312 2377 3.157881 GGTTCAAAGAGGAAAGGAAGGG 58.842 50.000 0.00 0.00 0.00 3.95
2313 2378 3.570125 GTGGTTCAAAGAGGAAAGGAAGG 59.430 47.826 0.00 0.00 0.00 3.46
2314 2379 3.251004 CGTGGTTCAAAGAGGAAAGGAAG 59.749 47.826 0.00 0.00 0.00 3.46
2315 2380 3.211045 CGTGGTTCAAAGAGGAAAGGAA 58.789 45.455 0.00 0.00 0.00 3.36
2316 2381 2.171870 ACGTGGTTCAAAGAGGAAAGGA 59.828 45.455 0.00 0.00 0.00 3.36
2317 2382 2.548480 GACGTGGTTCAAAGAGGAAAGG 59.452 50.000 0.00 0.00 0.00 3.11
2318 2383 2.548480 GGACGTGGTTCAAAGAGGAAAG 59.452 50.000 0.00 0.00 0.00 2.62
2319 2384 2.171870 AGGACGTGGTTCAAAGAGGAAA 59.828 45.455 0.00 0.00 0.00 3.13
2320 2385 1.766496 AGGACGTGGTTCAAAGAGGAA 59.234 47.619 0.00 0.00 0.00 3.36
2321 2386 1.420430 AGGACGTGGTTCAAAGAGGA 58.580 50.000 0.00 0.00 0.00 3.71
2322 2387 2.561419 TCTAGGACGTGGTTCAAAGAGG 59.439 50.000 0.00 0.00 0.00 3.69
2323 2388 3.936372 TCTAGGACGTGGTTCAAAGAG 57.064 47.619 0.00 0.00 0.00 2.85
2324 2389 4.884668 AATCTAGGACGTGGTTCAAAGA 57.115 40.909 0.00 0.00 0.00 2.52
2325 2390 6.594159 ACATAAATCTAGGACGTGGTTCAAAG 59.406 38.462 0.00 0.00 0.00 2.77
2326 2391 6.370442 CACATAAATCTAGGACGTGGTTCAAA 59.630 38.462 0.00 0.00 0.00 2.69
2327 2392 5.872617 CACATAAATCTAGGACGTGGTTCAA 59.127 40.000 0.00 0.00 0.00 2.69
2328 2393 5.186215 TCACATAAATCTAGGACGTGGTTCA 59.814 40.000 0.00 0.00 0.00 3.18
2329 2394 5.657474 TCACATAAATCTAGGACGTGGTTC 58.343 41.667 0.00 0.00 0.00 3.62
2330 2395 5.670792 TCACATAAATCTAGGACGTGGTT 57.329 39.130 0.00 0.00 0.00 3.67
2331 2396 5.871396 ATCACATAAATCTAGGACGTGGT 57.129 39.130 0.00 0.00 0.00 4.16
2332 2397 6.745116 TGTATCACATAAATCTAGGACGTGG 58.255 40.000 0.00 0.00 0.00 4.94
2333 2398 7.921214 AGTTGTATCACATAAATCTAGGACGTG 59.079 37.037 0.00 0.00 0.00 4.49
2334 2399 8.008513 AGTTGTATCACATAAATCTAGGACGT 57.991 34.615 0.00 0.00 0.00 4.34
2335 2400 8.873215 AAGTTGTATCACATAAATCTAGGACG 57.127 34.615 0.00 0.00 0.00 4.79
2337 2402 9.832445 GGAAAGTTGTATCACATAAATCTAGGA 57.168 33.333 0.00 0.00 0.00 2.94
2338 2403 9.057089 GGGAAAGTTGTATCACATAAATCTAGG 57.943 37.037 0.00 0.00 0.00 3.02
2339 2404 9.057089 GGGGAAAGTTGTATCACATAAATCTAG 57.943 37.037 0.00 0.00 0.00 2.43
2340 2405 8.553153 TGGGGAAAGTTGTATCACATAAATCTA 58.447 33.333 0.00 0.00 0.00 1.98
2341 2406 7.339466 GTGGGGAAAGTTGTATCACATAAATCT 59.661 37.037 0.00 0.00 0.00 2.40
2342 2407 7.339466 AGTGGGGAAAGTTGTATCACATAAATC 59.661 37.037 0.00 0.00 0.00 2.17
2343 2408 7.182060 AGTGGGGAAAGTTGTATCACATAAAT 58.818 34.615 0.00 0.00 0.00 1.40
2344 2409 6.548321 AGTGGGGAAAGTTGTATCACATAAA 58.452 36.000 0.00 0.00 0.00 1.40
2345 2410 6.134535 AGTGGGGAAAGTTGTATCACATAA 57.865 37.500 0.00 0.00 0.00 1.90
2346 2411 5.772393 AGTGGGGAAAGTTGTATCACATA 57.228 39.130 0.00 0.00 0.00 2.29
2347 2412 4.657814 AGTGGGGAAAGTTGTATCACAT 57.342 40.909 0.00 0.00 0.00 3.21
2348 2413 4.595781 AGTAGTGGGGAAAGTTGTATCACA 59.404 41.667 0.00 0.00 0.00 3.58
2349 2414 5.161943 AGTAGTGGGGAAAGTTGTATCAC 57.838 43.478 0.00 0.00 0.00 3.06
2350 2415 5.836024 AAGTAGTGGGGAAAGTTGTATCA 57.164 39.130 0.00 0.00 0.00 2.15
2351 2416 5.646793 GGAAAGTAGTGGGGAAAGTTGTATC 59.353 44.000 0.00 0.00 0.00 2.24
2352 2417 5.516062 GGGAAAGTAGTGGGGAAAGTTGTAT 60.516 44.000 0.00 0.00 0.00 2.29
2353 2418 4.202493 GGGAAAGTAGTGGGGAAAGTTGTA 60.202 45.833 0.00 0.00 0.00 2.41
2354 2419 3.436035 GGGAAAGTAGTGGGGAAAGTTGT 60.436 47.826 0.00 0.00 0.00 3.32
2355 2420 3.154710 GGGAAAGTAGTGGGGAAAGTTG 58.845 50.000 0.00 0.00 0.00 3.16
2356 2421 2.109480 GGGGAAAGTAGTGGGGAAAGTT 59.891 50.000 0.00 0.00 0.00 2.66
2357 2422 1.709115 GGGGAAAGTAGTGGGGAAAGT 59.291 52.381 0.00 0.00 0.00 2.66
2358 2423 2.509166 GGGGAAAGTAGTGGGGAAAG 57.491 55.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.