Multiple sequence alignment - TraesCS7B01G445600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G445600 chr7B 100.000 2417 0 0 1 2417 709322276 709324692 0.000000e+00 4464.0
1 TraesCS7B01G445600 chr7B 84.457 1216 115 30 593 1787 709258236 709259398 0.000000e+00 1131.0
2 TraesCS7B01G445600 chr7B 79.344 1036 140 48 693 1684 709377869 709378874 0.000000e+00 660.0
3 TraesCS7B01G445600 chr7B 88.911 514 42 6 909 1417 709354385 709354888 9.490000e-174 619.0
4 TraesCS7B01G445600 chr7B 80.409 832 117 25 961 1765 709395730 709396542 2.070000e-165 592.0
5 TraesCS7B01G445600 chr7B 85.559 367 41 7 18 382 709315730 709316086 8.160000e-100 374.0
6 TraesCS7B01G445600 chr7B 80.292 548 64 29 876 1420 709468296 709468802 8.160000e-100 374.0
7 TraesCS7B01G445600 chr7B 88.816 152 16 1 1547 1698 709354957 709355107 4.100000e-43 185.0
8 TraesCS7B01G445600 chr7A 86.620 1278 106 21 593 1852 708912859 708914089 0.000000e+00 1352.0
9 TraesCS7B01G445600 chr7A 84.916 948 91 18 712 1641 709028387 709029300 0.000000e+00 911.0
10 TraesCS7B01G445600 chr7A 83.850 935 120 16 770 1684 709141808 709142731 0.000000e+00 861.0
11 TraesCS7B01G445600 chr7A 84.598 896 102 15 667 1543 709121576 709122454 0.000000e+00 857.0
12 TraesCS7B01G445600 chr7A 82.147 941 123 27 770 1684 709129342 709130263 0.000000e+00 765.0
13 TraesCS7B01G445600 chr7A 88.696 460 47 4 1009 1464 708919285 708919743 7.550000e-155 556.0
14 TraesCS7B01G445600 chr7A 86.410 390 43 6 6 392 709027934 709028316 3.720000e-113 418.0
15 TraesCS7B01G445600 chr7A 89.416 274 16 5 1581 1842 709122452 709122724 1.380000e-87 333.0
16 TraesCS7B01G445600 chr7A 90.756 238 19 2 1909 2146 152541539 152541773 5.020000e-82 315.0
17 TraesCS7B01G445600 chr7A 80.974 431 45 17 5 414 708912417 708912831 8.390000e-80 307.0
18 TraesCS7B01G445600 chr7A 87.342 237 24 2 1910 2146 112133364 112133594 1.420000e-67 267.0
19 TraesCS7B01G445600 chr7A 87.234 235 28 2 1911 2144 720855632 720855865 1.420000e-67 267.0
20 TraesCS7B01G445600 chr7A 87.333 150 10 6 593 741 708919148 708919289 1.920000e-36 163.0
21 TraesCS7B01G445600 chr7A 88.710 62 4 1 576 634 709028327 709028388 3.330000e-09 73.1
22 TraesCS7B01G445600 chr7D 85.750 1186 101 35 594 1748 616055199 616056347 0.000000e+00 1192.0
23 TraesCS7B01G445600 chr7D 85.044 1130 93 27 580 1669 616102735 616103828 0.000000e+00 1081.0
24 TraesCS7B01G445600 chr7D 85.286 1067 120 19 593 1650 616067796 616068834 0.000000e+00 1066.0
25 TraesCS7B01G445600 chr7D 81.173 1142 145 36 660 1758 616173877 616174991 0.000000e+00 854.0
26 TraesCS7B01G445600 chr7D 80.821 1048 130 47 669 1684 616134092 616135100 0.000000e+00 756.0
27 TraesCS7B01G445600 chr7D 84.515 691 78 19 1109 1787 616075964 616076637 0.000000e+00 656.0
28 TraesCS7B01G445600 chr7D 92.547 161 12 0 414 574 530858135 530857975 5.200000e-57 231.0
29 TraesCS7B01G445600 chr7D 92.121 165 12 1 411 574 563440312 563440148 5.200000e-57 231.0
30 TraesCS7B01G445600 chr7D 92.025 163 12 1 2255 2417 616058560 616058721 6.720000e-56 228.0
31 TraesCS7B01G445600 chr4B 87.931 232 21 7 1912 2142 401082556 401082331 1.420000e-67 267.0
32 TraesCS7B01G445600 chr4B 90.964 166 15 0 414 579 7037119 7036954 8.700000e-55 224.0
33 TraesCS7B01G445600 chr1D 85.020 247 33 4 1898 2142 464400297 464400053 5.160000e-62 248.0
34 TraesCS7B01G445600 chr5A 93.711 159 10 0 1909 2067 683947279 683947121 3.110000e-59 239.0
35 TraesCS7B01G445600 chr3D 93.210 162 11 0 414 575 200383978 200383817 3.110000e-59 239.0
36 TraesCS7B01G445600 chr3D 92.547 161 12 0 414 574 137981640 137981480 5.200000e-57 231.0
37 TraesCS7B01G445600 chr1B 94.231 156 9 0 1912 2067 560330553 560330708 3.110000e-59 239.0
38 TraesCS7B01G445600 chr6B 93.631 157 10 0 1911 2067 712191468 712191312 4.020000e-58 235.0
39 TraesCS7B01G445600 chr6B 97.531 81 2 0 2067 2147 620266807 620266887 3.240000e-29 139.0
40 TraesCS7B01G445600 chr4A 93.631 157 10 0 1911 2067 666202300 666202144 4.020000e-58 235.0
41 TraesCS7B01G445600 chr4A 96.386 83 3 0 2067 2149 615058724 615058806 1.170000e-28 137.0
42 TraesCS7B01G445600 chr2A 91.228 171 12 3 414 582 12003434 12003265 1.870000e-56 230.0
43 TraesCS7B01G445600 chr5D 91.975 162 13 0 414 575 383645324 383645485 6.720000e-56 228.0
44 TraesCS7B01G445600 chr3B 90.173 173 14 3 414 584 535698554 535698725 3.130000e-54 222.0
45 TraesCS7B01G445600 chr4D 89.326 178 14 5 414 588 474374313 474374138 4.050000e-53 219.0
46 TraesCS7B01G445600 chr4D 94.565 92 3 2 2067 2158 459568884 459568973 9.010000e-30 141.0
47 TraesCS7B01G445600 chr2B 90.196 102 7 3 2067 2166 24865993 24865893 1.950000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G445600 chr7B 709322276 709324692 2416 False 4464.000000 4464 100.000000 1 2417 1 chr7B.!!$F3 2416
1 TraesCS7B01G445600 chr7B 709258236 709259398 1162 False 1131.000000 1131 84.457000 593 1787 1 chr7B.!!$F1 1194
2 TraesCS7B01G445600 chr7B 709377869 709378874 1005 False 660.000000 660 79.344000 693 1684 1 chr7B.!!$F4 991
3 TraesCS7B01G445600 chr7B 709395730 709396542 812 False 592.000000 592 80.409000 961 1765 1 chr7B.!!$F5 804
4 TraesCS7B01G445600 chr7B 709354385 709355107 722 False 402.000000 619 88.863500 909 1698 2 chr7B.!!$F7 789
5 TraesCS7B01G445600 chr7B 709468296 709468802 506 False 374.000000 374 80.292000 876 1420 1 chr7B.!!$F6 544
6 TraesCS7B01G445600 chr7A 709141808 709142731 923 False 861.000000 861 83.850000 770 1684 1 chr7A.!!$F4 914
7 TraesCS7B01G445600 chr7A 708912417 708914089 1672 False 829.500000 1352 83.797000 5 1852 2 chr7A.!!$F6 1847
8 TraesCS7B01G445600 chr7A 709129342 709130263 921 False 765.000000 765 82.147000 770 1684 1 chr7A.!!$F3 914
9 TraesCS7B01G445600 chr7A 709121576 709122724 1148 False 595.000000 857 87.007000 667 1842 2 chr7A.!!$F9 1175
10 TraesCS7B01G445600 chr7A 709027934 709029300 1366 False 467.366667 911 86.678667 6 1641 3 chr7A.!!$F8 1635
11 TraesCS7B01G445600 chr7A 708919148 708919743 595 False 359.500000 556 88.014500 593 1464 2 chr7A.!!$F7 871
12 TraesCS7B01G445600 chr7D 616102735 616103828 1093 False 1081.000000 1081 85.044000 580 1669 1 chr7D.!!$F3 1089
13 TraesCS7B01G445600 chr7D 616067796 616068834 1038 False 1066.000000 1066 85.286000 593 1650 1 chr7D.!!$F1 1057
14 TraesCS7B01G445600 chr7D 616173877 616174991 1114 False 854.000000 854 81.173000 660 1758 1 chr7D.!!$F5 1098
15 TraesCS7B01G445600 chr7D 616134092 616135100 1008 False 756.000000 756 80.821000 669 1684 1 chr7D.!!$F4 1015
16 TraesCS7B01G445600 chr7D 616055199 616058721 3522 False 710.000000 1192 88.887500 594 2417 2 chr7D.!!$F6 1823
17 TraesCS7B01G445600 chr7D 616075964 616076637 673 False 656.000000 656 84.515000 1109 1787 1 chr7D.!!$F2 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
870 967 0.106469 TCCTCCGTCCTCATCTCCTG 60.106 60.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 4232 0.03659 TATGAGCACTTGTGCCTGCA 59.963 50.0 20.39 16.29 35.73 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 6.526566 AACAAGTCGACAGTATGAAAAGAC 57.473 37.500 19.50 0.00 39.69 3.01
91 98 3.002451 CGAATGTTCCACACAAACGGTAA 59.998 43.478 0.00 0.00 39.50 2.85
105 112 6.418523 CACAAACGGTAAAATAACAAGTTCCC 59.581 38.462 0.00 0.00 0.00 3.97
106 113 5.710513 AACGGTAAAATAACAAGTTCCCC 57.289 39.130 0.00 0.00 0.00 4.81
110 117 4.397103 GGTAAAATAACAAGTTCCCCGGAG 59.603 45.833 0.73 0.00 0.00 4.63
135 142 9.552695 AGGTCCACATCATGATAGAAGAATATA 57.447 33.333 8.15 0.00 0.00 0.86
147 154 9.935241 TGATAGAAGAATATAATCAGAACCTGC 57.065 33.333 0.00 0.00 0.00 4.85
152 159 4.712051 ATATAATCAGAACCTGCCAGCA 57.288 40.909 0.00 0.00 0.00 4.41
156 163 0.622136 TCAGAACCTGCCAGCATCAT 59.378 50.000 0.00 0.00 0.00 2.45
171 182 2.606795 GCATCATGAGACCTAGCTCGAC 60.607 54.545 0.09 0.00 37.73 4.20
183 194 4.338682 ACCTAGCTCGACGAGAACAATAAT 59.661 41.667 28.43 2.55 0.00 1.28
206 217 7.921786 ATGGAAAATCTATCGTTCTTGTTGA 57.078 32.000 0.00 0.00 0.00 3.18
226 237 4.792068 TGAGGAATCCAAACACAAAGTCT 58.208 39.130 0.61 0.00 0.00 3.24
300 321 2.642427 GTGACACATATGATGCCACCA 58.358 47.619 10.38 0.00 0.00 4.17
305 326 3.887110 ACACATATGATGCCACCAAGATG 59.113 43.478 10.38 0.00 0.00 2.90
320 341 7.255208 GCCACCAAGATGTGAAAATTCAAATTT 60.255 33.333 0.55 0.00 35.32 1.82
335 356 9.275398 AAATTCAAATTTAACATGTCAGCATGT 57.725 25.926 0.00 7.34 46.38 3.21
347 370 4.923893 TGTCAGCATGTCAAGAAAACAAG 58.076 39.130 0.00 0.00 37.40 3.16
355 378 8.292448 AGCATGTCAAGAAAACAAGTAGTATTG 58.708 33.333 0.00 0.00 36.22 1.90
415 438 9.819267 ATCCACTAATCTACAGCTAAACTTTAC 57.181 33.333 0.00 0.00 0.00 2.01
417 440 8.870879 CCACTAATCTACAGCTAAACTTTACAC 58.129 37.037 0.00 0.00 0.00 2.90
418 441 8.870879 CACTAATCTACAGCTAAACTTTACACC 58.129 37.037 0.00 0.00 0.00 4.16
419 442 8.039538 ACTAATCTACAGCTAAACTTTACACCC 58.960 37.037 0.00 0.00 0.00 4.61
420 443 6.622427 ATCTACAGCTAAACTTTACACCCT 57.378 37.500 0.00 0.00 0.00 4.34
421 444 6.034161 TCTACAGCTAAACTTTACACCCTC 57.966 41.667 0.00 0.00 0.00 4.30
422 445 4.017177 ACAGCTAAACTTTACACCCTCC 57.983 45.455 0.00 0.00 0.00 4.30
425 448 3.072038 AGCTAAACTTTACACCCTCCGTT 59.928 43.478 0.00 0.00 0.00 4.44
427 450 2.556144 AACTTTACACCCTCCGTTCC 57.444 50.000 0.00 0.00 0.00 3.62
428 451 1.725803 ACTTTACACCCTCCGTTCCT 58.274 50.000 0.00 0.00 0.00 3.36
429 452 2.893424 ACTTTACACCCTCCGTTCCTA 58.107 47.619 0.00 0.00 0.00 2.94
430 453 3.242011 ACTTTACACCCTCCGTTCCTAA 58.758 45.455 0.00 0.00 0.00 2.69
433 456 5.484998 ACTTTACACCCTCCGTTCCTAAATA 59.515 40.000 0.00 0.00 0.00 1.40
434 457 6.157471 ACTTTACACCCTCCGTTCCTAAATAT 59.843 38.462 0.00 0.00 0.00 1.28
435 458 7.345392 ACTTTACACCCTCCGTTCCTAAATATA 59.655 37.037 0.00 0.00 0.00 0.86
437 460 6.170846 ACACCCTCCGTTCCTAAATATAAG 57.829 41.667 0.00 0.00 0.00 1.73
438 461 5.664457 ACACCCTCCGTTCCTAAATATAAGT 59.336 40.000 0.00 0.00 0.00 2.24
440 463 7.052248 CACCCTCCGTTCCTAAATATAAGTTT 58.948 38.462 0.00 0.00 0.00 2.66
441 464 7.555195 CACCCTCCGTTCCTAAATATAAGTTTT 59.445 37.037 0.00 0.00 0.00 2.43
442 465 7.772292 ACCCTCCGTTCCTAAATATAAGTTTTC 59.228 37.037 0.00 0.00 0.00 2.29
443 466 7.228108 CCCTCCGTTCCTAAATATAAGTTTTCC 59.772 40.741 0.00 0.00 0.00 3.13
444 467 7.991460 CCTCCGTTCCTAAATATAAGTTTTCCT 59.009 37.037 0.00 0.00 0.00 3.36
516 539 7.195839 AGTGTAGATTCACTCTTTTTGCTTC 57.804 36.000 0.00 0.00 44.07 3.86
517 540 6.073548 AGTGTAGATTCACTCTTTTTGCTTCG 60.074 38.462 0.00 0.00 44.07 3.79
518 541 5.758296 TGTAGATTCACTCTTTTTGCTTCGT 59.242 36.000 0.00 0.00 35.28 3.85
519 542 6.926826 TGTAGATTCACTCTTTTTGCTTCGTA 59.073 34.615 0.00 0.00 35.28 3.43
520 543 7.602644 TGTAGATTCACTCTTTTTGCTTCGTAT 59.397 33.333 0.00 0.00 35.28 3.06
521 544 6.835914 AGATTCACTCTTTTTGCTTCGTATG 58.164 36.000 0.00 0.00 0.00 2.39
522 545 6.428159 AGATTCACTCTTTTTGCTTCGTATGT 59.572 34.615 0.00 0.00 0.00 2.29
523 546 7.602644 AGATTCACTCTTTTTGCTTCGTATGTA 59.397 33.333 0.00 0.00 0.00 2.29
524 547 6.706055 TCACTCTTTTTGCTTCGTATGTAG 57.294 37.500 0.00 0.00 0.00 2.74
525 548 6.220930 TCACTCTTTTTGCTTCGTATGTAGT 58.779 36.000 0.00 0.00 0.00 2.73
526 549 6.704493 TCACTCTTTTTGCTTCGTATGTAGTT 59.296 34.615 0.00 0.00 0.00 2.24
527 550 7.010023 CACTCTTTTTGCTTCGTATGTAGTTC 58.990 38.462 0.00 0.00 0.00 3.01
528 551 6.128902 ACTCTTTTTGCTTCGTATGTAGTTCG 60.129 38.462 0.00 0.00 0.00 3.95
529 552 5.693104 TCTTTTTGCTTCGTATGTAGTTCGT 59.307 36.000 0.00 0.00 0.00 3.85
530 553 6.862608 TCTTTTTGCTTCGTATGTAGTTCGTA 59.137 34.615 0.00 0.00 0.00 3.43
531 554 6.621737 TTTTGCTTCGTATGTAGTTCGTAG 57.378 37.500 0.00 0.00 0.00 3.51
532 555 4.952262 TGCTTCGTATGTAGTTCGTAGT 57.048 40.909 0.00 0.00 0.00 2.73
533 556 4.655027 TGCTTCGTATGTAGTTCGTAGTG 58.345 43.478 0.00 0.00 0.00 2.74
534 557 4.392754 TGCTTCGTATGTAGTTCGTAGTGA 59.607 41.667 0.00 0.00 0.00 3.41
535 558 5.106594 TGCTTCGTATGTAGTTCGTAGTGAA 60.107 40.000 0.00 0.00 0.00 3.18
536 559 5.796935 GCTTCGTATGTAGTTCGTAGTGAAA 59.203 40.000 0.00 0.00 38.60 2.69
537 560 6.471519 GCTTCGTATGTAGTTCGTAGTGAAAT 59.528 38.462 0.00 0.00 38.60 2.17
538 561 7.305304 GCTTCGTATGTAGTTCGTAGTGAAATC 60.305 40.741 0.00 0.00 38.60 2.17
539 562 7.312657 TCGTATGTAGTTCGTAGTGAAATCT 57.687 36.000 0.00 0.00 38.60 2.40
540 563 7.404985 TCGTATGTAGTTCGTAGTGAAATCTC 58.595 38.462 0.00 0.00 38.60 2.75
541 564 7.279536 TCGTATGTAGTTCGTAGTGAAATCTCT 59.720 37.037 0.00 0.00 38.60 3.10
542 565 8.546244 CGTATGTAGTTCGTAGTGAAATCTCTA 58.454 37.037 0.00 0.00 38.60 2.43
546 569 9.970395 TGTAGTTCGTAGTGAAATCTCTAAAAA 57.030 29.630 0.00 0.00 38.60 1.94
549 572 9.194271 AGTTCGTAGTGAAATCTCTAAAAAGAC 57.806 33.333 0.00 0.00 38.60 3.01
550 573 9.194271 GTTCGTAGTGAAATCTCTAAAAAGACT 57.806 33.333 0.00 0.00 38.60 3.24
551 574 9.760077 TTCGTAGTGAAATCTCTAAAAAGACTT 57.240 29.630 0.00 0.00 32.37 3.01
571 594 9.819267 AAGACTTATATTTAGAAACGGAGGAAG 57.181 33.333 0.00 0.00 0.00 3.46
572 595 8.979534 AGACTTATATTTAGAAACGGAGGAAGT 58.020 33.333 0.00 0.00 0.00 3.01
583 606 7.841956 AGAAACGGAGGAAGTATATATCATGG 58.158 38.462 0.00 0.00 0.00 3.66
584 607 5.599999 ACGGAGGAAGTATATATCATGGC 57.400 43.478 0.00 0.00 0.00 4.40
585 608 5.023452 ACGGAGGAAGTATATATCATGGCA 58.977 41.667 0.00 0.00 0.00 4.92
586 609 5.663106 ACGGAGGAAGTATATATCATGGCAT 59.337 40.000 0.00 0.00 0.00 4.40
587 610 5.987953 CGGAGGAAGTATATATCATGGCATG 59.012 44.000 21.42 21.42 0.00 4.06
588 611 6.294473 GGAGGAAGTATATATCATGGCATGG 58.706 44.000 26.15 8.92 0.00 3.66
589 612 5.688807 AGGAAGTATATATCATGGCATGGC 58.311 41.667 26.15 13.29 0.00 4.40
590 613 5.192321 AGGAAGTATATATCATGGCATGGCA 59.808 40.000 25.52 25.52 0.00 4.92
591 614 6.066690 GGAAGTATATATCATGGCATGGCAT 58.933 40.000 27.75 27.75 0.00 4.40
656 687 2.138320 CGCACTGATTCCGCATATTCT 58.862 47.619 0.00 0.00 0.00 2.40
658 689 3.133691 GCACTGATTCCGCATATTCTCA 58.866 45.455 0.00 0.00 0.00 3.27
684 716 2.048127 GCGCACGAGTCCCTTTCT 60.048 61.111 0.30 0.00 0.00 2.52
694 726 3.075148 GAGTCCCTTTCTACCTTGTTGC 58.925 50.000 0.00 0.00 0.00 4.17
753 790 0.106918 ACGTTCAAGAGGCCCACAAA 60.107 50.000 0.00 0.00 0.00 2.83
762 807 0.258774 AGGCCCACAAACAACTCACT 59.741 50.000 0.00 0.00 0.00 3.41
763 808 1.111277 GGCCCACAAACAACTCACTT 58.889 50.000 0.00 0.00 0.00 3.16
827 908 7.769507 TCTTTGTAGAGATAAGAACGAGAGCTA 59.230 37.037 0.00 0.00 0.00 3.32
830 912 5.043737 AGAGATAAGAACGAGAGCTAGGT 57.956 43.478 0.00 0.00 0.00 3.08
869 966 0.184933 CTCCTCCGTCCTCATCTCCT 59.815 60.000 0.00 0.00 0.00 3.69
870 967 0.106469 TCCTCCGTCCTCATCTCCTG 60.106 60.000 0.00 0.00 0.00 3.86
871 968 0.396417 CCTCCGTCCTCATCTCCTGT 60.396 60.000 0.00 0.00 0.00 4.00
872 969 1.028905 CTCCGTCCTCATCTCCTGTC 58.971 60.000 0.00 0.00 0.00 3.51
873 970 0.626382 TCCGTCCTCATCTCCTGTCT 59.374 55.000 0.00 0.00 0.00 3.41
874 971 1.006043 TCCGTCCTCATCTCCTGTCTT 59.994 52.381 0.00 0.00 0.00 3.01
880 977 2.109774 CTCATCTCCTGTCTTGAGCCT 58.890 52.381 0.00 0.00 30.23 4.58
881 978 3.295093 CTCATCTCCTGTCTTGAGCCTA 58.705 50.000 0.00 0.00 30.23 3.93
955 1054 5.671074 CAACGAAGAAGTACTCTGCTTTTC 58.329 41.667 0.00 0.00 39.48 2.29
984 1083 3.305398 ACTCAAGAACACAGATCGGAC 57.695 47.619 0.00 0.00 0.00 4.79
985 1084 2.628178 ACTCAAGAACACAGATCGGACA 59.372 45.455 0.00 0.00 0.00 4.02
986 1085 3.069586 ACTCAAGAACACAGATCGGACAA 59.930 43.478 0.00 0.00 0.00 3.18
987 1086 4.058124 CTCAAGAACACAGATCGGACAAA 58.942 43.478 0.00 0.00 0.00 2.83
988 1087 4.058124 TCAAGAACACAGATCGGACAAAG 58.942 43.478 0.00 0.00 0.00 2.77
989 1088 4.058124 CAAGAACACAGATCGGACAAAGA 58.942 43.478 0.00 0.00 0.00 2.52
1012 1111 1.018910 TCGATCGATGGCTACGTTCA 58.981 50.000 15.15 0.00 32.20 3.18
1517 1712 3.046390 GAGAACATCGTCAAGGCTATCG 58.954 50.000 0.00 0.00 0.00 2.92
1522 1717 0.179137 TCGTCAAGGCTATCGTGCAG 60.179 55.000 0.00 0.00 34.04 4.41
1730 2034 4.715297 AGGAATTAGTTACCTCCATGTCGT 59.285 41.667 0.00 0.00 0.00 4.34
1743 2047 4.593157 TCCATGTCGTTCGTTTCTTTTTG 58.407 39.130 0.00 0.00 0.00 2.44
1752 4027 5.547341 GTTCGTTTCTTTTTGGAAAGTTGC 58.453 37.500 0.00 0.00 42.32 4.17
1786 4061 4.382291 TGCACGAAATTAAGTACCACAGT 58.618 39.130 0.00 0.00 0.00 3.55
1787 4062 5.539979 TGCACGAAATTAAGTACCACAGTA 58.460 37.500 0.00 0.00 0.00 2.74
1796 4071 2.704464 GTACCACAGTACCCCAATCC 57.296 55.000 0.00 0.00 42.66 3.01
1797 4072 1.910671 GTACCACAGTACCCCAATCCA 59.089 52.381 0.00 0.00 42.66 3.41
1845 4132 7.770897 GCCATATCATAGTTTTGGATAGGTAGG 59.229 40.741 0.00 0.00 0.00 3.18
1879 4184 6.825721 GGATAAATGGTCACTCTTGTCAAGAT 59.174 38.462 15.60 4.06 36.82 2.40
1880 4185 7.337942 GGATAAATGGTCACTCTTGTCAAGATT 59.662 37.037 15.60 7.66 36.82 2.40
1891 4196 7.753132 CACTCTTGTCAAGATTACTACTCTCAC 59.247 40.741 15.60 0.00 36.82 3.51
1892 4197 7.448777 ACTCTTGTCAAGATTACTACTCTCACA 59.551 37.037 15.60 0.00 36.82 3.58
1894 4199 9.462606 TCTTGTCAAGATTACTACTCTCACATA 57.537 33.333 11.36 0.00 31.20 2.29
1953 4258 3.575858 CACAAGTGCTCATATACACGC 57.424 47.619 0.00 0.00 41.72 5.34
1954 4259 2.034591 CACAAGTGCTCATATACACGCG 60.035 50.000 3.53 3.53 41.72 6.01
1955 4260 1.071239 CAAGTGCTCATATACACGCGC 60.071 52.381 5.73 0.00 41.72 6.86
1956 4261 0.102300 AGTGCTCATATACACGCGCA 59.898 50.000 5.73 0.00 41.72 6.09
1957 4262 1.139989 GTGCTCATATACACGCGCAT 58.860 50.000 5.73 0.00 33.41 4.73
1958 4263 2.030274 AGTGCTCATATACACGCGCATA 60.030 45.455 5.73 1.53 41.72 3.14
1959 4264 2.090658 GTGCTCATATACACGCGCATAC 59.909 50.000 5.73 0.00 33.41 2.39
1960 4265 2.287909 TGCTCATATACACGCGCATACA 60.288 45.455 5.73 0.00 0.00 2.29
1961 4266 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
1962 4267 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
1963 4268 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
1964 4269 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
1965 4270 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
1966 4271 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
1967 4272 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
1968 4273 2.184322 CGCGCATACACTCACCCT 59.816 61.111 8.75 0.00 0.00 4.34
1969 4274 1.447838 CGCGCATACACTCACCCTT 60.448 57.895 8.75 0.00 0.00 3.95
1970 4275 1.019278 CGCGCATACACTCACCCTTT 61.019 55.000 8.75 0.00 0.00 3.11
1971 4276 1.165270 GCGCATACACTCACCCTTTT 58.835 50.000 0.30 0.00 0.00 2.27
1972 4277 1.135689 GCGCATACACTCACCCTTTTG 60.136 52.381 0.30 0.00 0.00 2.44
1973 4278 2.422597 CGCATACACTCACCCTTTTGA 58.577 47.619 0.00 0.00 0.00 2.69
1974 4279 2.811431 CGCATACACTCACCCTTTTGAA 59.189 45.455 0.00 0.00 0.00 2.69
1975 4280 3.364964 CGCATACACTCACCCTTTTGAAC 60.365 47.826 0.00 0.00 0.00 3.18
1976 4281 3.364964 GCATACACTCACCCTTTTGAACG 60.365 47.826 0.00 0.00 0.00 3.95
1977 4282 1.021968 ACACTCACCCTTTTGAACGC 58.978 50.000 0.00 0.00 0.00 4.84
1978 4283 1.021202 CACTCACCCTTTTGAACGCA 58.979 50.000 0.00 0.00 0.00 5.24
1979 4284 1.021968 ACTCACCCTTTTGAACGCAC 58.978 50.000 0.00 0.00 0.00 5.34
1980 4285 1.021202 CTCACCCTTTTGAACGCACA 58.979 50.000 0.00 0.00 0.00 4.57
1981 4286 0.736053 TCACCCTTTTGAACGCACAC 59.264 50.000 0.00 0.00 0.00 3.82
1982 4287 0.453793 CACCCTTTTGAACGCACACA 59.546 50.000 0.00 0.00 0.00 3.72
1983 4288 0.454196 ACCCTTTTGAACGCACACAC 59.546 50.000 0.00 0.00 0.00 3.82
1984 4289 0.591236 CCCTTTTGAACGCACACACG 60.591 55.000 0.00 0.00 39.50 4.49
1985 4290 1.199852 CCTTTTGAACGCACACACGC 61.200 55.000 0.00 0.00 36.19 5.34
1986 4291 0.522286 CTTTTGAACGCACACACGCA 60.522 50.000 0.00 0.00 36.19 5.24
1987 4292 0.794981 TTTTGAACGCACACACGCAC 60.795 50.000 0.00 0.00 36.19 5.34
1988 4293 1.912371 TTTGAACGCACACACGCACA 61.912 50.000 0.00 0.00 36.19 4.57
1989 4294 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
1990 4295 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
1993 4298 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
1994 4299 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
1995 4300 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
1996 4301 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
1997 4302 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
1998 4303 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
1999 4304 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
2000 4305 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
2001 4306 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
2002 4307 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
2003 4308 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
2004 4309 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
2005 4310 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
2006 4311 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
2007 4312 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
2008 4313 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
2009 4314 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
2010 4315 1.133009 CCTACCCCTATGAGCACCTCT 60.133 57.143 0.00 0.00 0.00 3.69
2011 4316 1.967066 CTACCCCTATGAGCACCTCTG 59.033 57.143 0.00 0.00 0.00 3.35
2012 4317 0.339859 ACCCCTATGAGCACCTCTGA 59.660 55.000 0.00 0.00 0.00 3.27
2013 4318 1.047002 CCCCTATGAGCACCTCTGAG 58.953 60.000 0.00 0.00 0.00 3.35
2014 4319 1.412217 CCCCTATGAGCACCTCTGAGA 60.412 57.143 6.17 0.00 0.00 3.27
2015 4320 1.962807 CCCTATGAGCACCTCTGAGAG 59.037 57.143 6.17 1.57 0.00 3.20
2016 4321 2.424091 CCCTATGAGCACCTCTGAGAGA 60.424 54.545 11.82 0.00 0.00 3.10
2017 4322 2.622942 CCTATGAGCACCTCTGAGAGAC 59.377 54.545 11.82 0.00 0.00 3.36
2018 4323 2.530460 ATGAGCACCTCTGAGAGACT 57.470 50.000 11.82 5.18 0.00 3.24
2019 4324 1.543607 TGAGCACCTCTGAGAGACTG 58.456 55.000 11.82 6.88 0.00 3.51
2020 4325 1.074566 TGAGCACCTCTGAGAGACTGA 59.925 52.381 11.82 0.00 0.00 3.41
2021 4326 1.745087 GAGCACCTCTGAGAGACTGAG 59.255 57.143 11.82 0.00 41.94 3.35
2022 4327 0.173255 GCACCTCTGAGAGACTGAGC 59.827 60.000 11.82 0.92 41.28 4.26
2023 4328 0.817013 CACCTCTGAGAGACTGAGCC 59.183 60.000 11.82 0.00 41.28 4.70
2024 4329 0.407528 ACCTCTGAGAGACTGAGCCA 59.592 55.000 11.82 0.00 41.28 4.75
2025 4330 1.105457 CCTCTGAGAGACTGAGCCAG 58.895 60.000 11.82 1.16 41.28 4.85
2026 4331 0.457035 CTCTGAGAGACTGAGCCAGC 59.543 60.000 2.60 0.00 37.65 4.85
2027 4332 0.251519 TCTGAGAGACTGAGCCAGCA 60.252 55.000 2.50 0.00 34.37 4.41
2028 4333 0.825410 CTGAGAGACTGAGCCAGCAT 59.175 55.000 2.50 0.00 34.37 3.79
2029 4334 2.030371 CTGAGAGACTGAGCCAGCATA 58.970 52.381 2.50 0.00 34.37 3.14
2030 4335 1.753649 TGAGAGACTGAGCCAGCATAC 59.246 52.381 2.50 0.00 34.37 2.39
2031 4336 1.068434 GAGAGACTGAGCCAGCATACC 59.932 57.143 2.50 0.00 34.37 2.73
2032 4337 0.826715 GAGACTGAGCCAGCATACCA 59.173 55.000 2.50 0.00 34.37 3.25
2033 4338 1.415659 GAGACTGAGCCAGCATACCAT 59.584 52.381 2.50 0.00 34.37 3.55
2034 4339 1.415659 AGACTGAGCCAGCATACCATC 59.584 52.381 2.50 0.00 34.37 3.51
2035 4340 1.415659 GACTGAGCCAGCATACCATCT 59.584 52.381 2.50 0.00 34.37 2.90
2036 4341 1.842562 ACTGAGCCAGCATACCATCTT 59.157 47.619 2.50 0.00 34.37 2.40
2037 4342 2.219458 CTGAGCCAGCATACCATCTTG 58.781 52.381 0.00 0.00 0.00 3.02
2038 4343 1.839354 TGAGCCAGCATACCATCTTGA 59.161 47.619 0.00 0.00 0.00 3.02
2039 4344 2.239402 TGAGCCAGCATACCATCTTGAA 59.761 45.455 0.00 0.00 0.00 2.69
2040 4345 3.282021 GAGCCAGCATACCATCTTGAAA 58.718 45.455 0.00 0.00 0.00 2.69
2041 4346 3.887716 GAGCCAGCATACCATCTTGAAAT 59.112 43.478 0.00 0.00 0.00 2.17
2042 4347 4.284178 AGCCAGCATACCATCTTGAAATT 58.716 39.130 0.00 0.00 0.00 1.82
2043 4348 4.713321 AGCCAGCATACCATCTTGAAATTT 59.287 37.500 0.00 0.00 0.00 1.82
2044 4349 5.893255 AGCCAGCATACCATCTTGAAATTTA 59.107 36.000 0.00 0.00 0.00 1.40
2045 4350 5.979517 GCCAGCATACCATCTTGAAATTTAC 59.020 40.000 0.00 0.00 0.00 2.01
2046 4351 6.201517 CCAGCATACCATCTTGAAATTTACG 58.798 40.000 0.00 0.00 0.00 3.18
2047 4352 6.038161 CCAGCATACCATCTTGAAATTTACGA 59.962 38.462 0.00 0.00 0.00 3.43
2048 4353 7.415095 CCAGCATACCATCTTGAAATTTACGAA 60.415 37.037 0.00 0.00 0.00 3.85
2049 4354 7.641411 CAGCATACCATCTTGAAATTTACGAAG 59.359 37.037 0.00 0.00 0.00 3.79
2050 4355 6.414987 GCATACCATCTTGAAATTTACGAAGC 59.585 38.462 0.00 0.00 0.00 3.86
2051 4356 5.957842 ACCATCTTGAAATTTACGAAGCA 57.042 34.783 0.00 0.00 0.00 3.91
2052 4357 6.325919 ACCATCTTGAAATTTACGAAGCAA 57.674 33.333 0.00 0.00 0.00 3.91
2053 4358 6.149633 ACCATCTTGAAATTTACGAAGCAAC 58.850 36.000 0.00 0.00 0.00 4.17
2054 4359 5.572896 CCATCTTGAAATTTACGAAGCAACC 59.427 40.000 0.00 0.00 0.00 3.77
2055 4360 4.778904 TCTTGAAATTTACGAAGCAACCG 58.221 39.130 0.00 0.00 0.00 4.44
2056 4361 4.273969 TCTTGAAATTTACGAAGCAACCGT 59.726 37.500 0.00 0.00 43.26 4.83
2057 4362 5.466058 TCTTGAAATTTACGAAGCAACCGTA 59.534 36.000 0.00 0.00 40.95 4.02
2058 4363 5.272167 TGAAATTTACGAAGCAACCGTAG 57.728 39.130 0.00 0.00 42.42 3.51
2070 4375 4.554363 CCGTAGGCACCTCGCGAG 62.554 72.222 29.06 29.06 46.14 5.03
2072 4377 4.129737 GTAGGCACCTCGCGAGCA 62.130 66.667 30.49 7.56 43.84 4.26
2073 4378 4.129737 TAGGCACCTCGCGAGCAC 62.130 66.667 30.49 19.89 43.84 4.40
2079 4384 3.842923 CCTCGCGAGCACCAGGAT 61.843 66.667 30.49 0.00 0.00 3.24
2080 4385 2.185350 CTCGCGAGCACCAGGATT 59.815 61.111 25.07 0.00 0.00 3.01
2081 4386 1.448540 CTCGCGAGCACCAGGATTT 60.449 57.895 25.07 0.00 0.00 2.17
2082 4387 1.699656 CTCGCGAGCACCAGGATTTG 61.700 60.000 25.07 0.00 0.00 2.32
2083 4388 1.741401 CGCGAGCACCAGGATTTGA 60.741 57.895 0.00 0.00 0.00 2.69
2084 4389 1.298157 CGCGAGCACCAGGATTTGAA 61.298 55.000 0.00 0.00 0.00 2.69
2085 4390 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
2086 4391 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
2087 4392 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
2088 4393 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
2093 4398 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
2103 4408 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
2104 4409 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
2120 4425 4.248691 GGATACCACTATCCACGTAACC 57.751 50.000 0.00 0.00 45.82 2.85
2121 4426 3.638160 GGATACCACTATCCACGTAACCA 59.362 47.826 0.00 0.00 45.82 3.67
2122 4427 4.282703 GGATACCACTATCCACGTAACCAT 59.717 45.833 0.00 0.00 45.82 3.55
2123 4428 3.814005 ACCACTATCCACGTAACCATC 57.186 47.619 0.00 0.00 0.00 3.51
2124 4429 3.371965 ACCACTATCCACGTAACCATCT 58.628 45.455 0.00 0.00 0.00 2.90
2125 4430 3.383825 ACCACTATCCACGTAACCATCTC 59.616 47.826 0.00 0.00 0.00 2.75
2126 4431 3.383505 CCACTATCCACGTAACCATCTCA 59.616 47.826 0.00 0.00 0.00 3.27
2127 4432 4.142026 CCACTATCCACGTAACCATCTCAA 60.142 45.833 0.00 0.00 0.00 3.02
2128 4433 4.804139 CACTATCCACGTAACCATCTCAAC 59.196 45.833 0.00 0.00 0.00 3.18
2129 4434 2.754946 TCCACGTAACCATCTCAACC 57.245 50.000 0.00 0.00 0.00 3.77
2130 4435 1.972075 TCCACGTAACCATCTCAACCA 59.028 47.619 0.00 0.00 0.00 3.67
2131 4436 2.073816 CCACGTAACCATCTCAACCAC 58.926 52.381 0.00 0.00 0.00 4.16
2132 4437 2.549134 CCACGTAACCATCTCAACCACA 60.549 50.000 0.00 0.00 0.00 4.17
2133 4438 2.736721 CACGTAACCATCTCAACCACAG 59.263 50.000 0.00 0.00 0.00 3.66
2134 4439 2.289444 ACGTAACCATCTCAACCACAGG 60.289 50.000 0.00 0.00 0.00 4.00
2135 4440 2.289444 CGTAACCATCTCAACCACAGGT 60.289 50.000 0.00 0.00 37.65 4.00
2160 4465 6.837992 TGGTTCGCTATGTCTTCAATTTAAC 58.162 36.000 0.00 0.00 0.00 2.01
2164 4469 7.464830 TCGCTATGTCTTCAATTTAACTAGC 57.535 36.000 0.00 0.00 0.00 3.42
2186 4491 6.663734 AGCTAAACATATATTATCTGCCCCC 58.336 40.000 0.00 0.00 0.00 5.40
2187 4492 6.217487 AGCTAAACATATATTATCTGCCCCCA 59.783 38.462 0.00 0.00 0.00 4.96
2192 4497 8.740616 AACATATATTATCTGCCCCCAAAATT 57.259 30.769 0.00 0.00 0.00 1.82
2196 4501 9.836179 ATATATTATCTGCCCCCAAAATTTACA 57.164 29.630 0.00 0.00 0.00 2.41
2199 4504 3.103742 TCTGCCCCCAAAATTTACATCC 58.896 45.455 0.00 0.00 0.00 3.51
2203 4508 5.284582 TGCCCCCAAAATTTACATCCTAAT 58.715 37.500 0.00 0.00 0.00 1.73
2205 4510 7.079048 TGCCCCCAAAATTTACATCCTAATAT 58.921 34.615 0.00 0.00 0.00 1.28
2219 4524 7.529555 ACATCCTAATATTCATGGTCAATGGT 58.470 34.615 0.00 0.00 36.86 3.55
2220 4525 7.667219 ACATCCTAATATTCATGGTCAATGGTC 59.333 37.037 0.00 0.00 36.86 4.02
2221 4526 7.147958 TCCTAATATTCATGGTCAATGGTCA 57.852 36.000 0.00 0.00 36.86 4.02
2222 4527 7.758609 TCCTAATATTCATGGTCAATGGTCAT 58.241 34.615 0.00 0.00 36.86 3.06
2223 4528 7.666804 TCCTAATATTCATGGTCAATGGTCATG 59.333 37.037 9.30 9.30 39.49 3.07
2224 4529 7.666804 CCTAATATTCATGGTCAATGGTCATGA 59.333 37.037 12.63 12.63 43.53 3.07
2227 4532 3.009026 TCATGGTCAATGGTCATGAACG 58.991 45.455 6.21 0.00 42.65 3.95
2228 4533 2.559698 TGGTCAATGGTCATGAACGT 57.440 45.000 6.21 2.14 37.32 3.99
2229 4534 2.857483 TGGTCAATGGTCATGAACGTT 58.143 42.857 12.58 12.58 37.32 3.99
2230 4535 2.811431 TGGTCAATGGTCATGAACGTTC 59.189 45.455 21.42 21.42 37.32 3.95
2231 4536 3.074412 GGTCAATGGTCATGAACGTTCT 58.926 45.455 27.32 11.56 0.00 3.01
2232 4537 3.120199 GGTCAATGGTCATGAACGTTCTG 60.120 47.826 27.32 21.33 0.00 3.02
2233 4538 3.498397 GTCAATGGTCATGAACGTTCTGT 59.502 43.478 27.32 14.36 0.00 3.41
2234 4539 4.688879 GTCAATGGTCATGAACGTTCTGTA 59.311 41.667 27.32 9.50 0.00 2.74
2235 4540 4.688879 TCAATGGTCATGAACGTTCTGTAC 59.311 41.667 27.32 20.23 0.00 2.90
2236 4541 3.737032 TGGTCATGAACGTTCTGTACA 57.263 42.857 27.32 19.78 0.00 2.90
2237 4542 4.265904 TGGTCATGAACGTTCTGTACAT 57.734 40.909 27.32 11.34 0.00 2.29
2238 4543 4.242475 TGGTCATGAACGTTCTGTACATC 58.758 43.478 27.32 12.20 0.00 3.06
2239 4544 4.242475 GGTCATGAACGTTCTGTACATCA 58.758 43.478 27.32 7.31 0.00 3.07
2240 4545 4.870426 GGTCATGAACGTTCTGTACATCAT 59.130 41.667 27.32 9.40 34.84 2.45
2241 4546 5.351465 GGTCATGAACGTTCTGTACATCATT 59.649 40.000 27.32 0.00 33.20 2.57
2242 4547 6.455646 GGTCATGAACGTTCTGTACATCATTC 60.456 42.308 27.32 7.64 33.20 2.67
2243 4548 5.288472 TCATGAACGTTCTGTACATCATTCG 59.712 40.000 27.32 2.35 33.20 3.34
2244 4549 3.366724 TGAACGTTCTGTACATCATTCGC 59.633 43.478 27.32 0.00 0.00 4.70
2245 4550 2.954316 ACGTTCTGTACATCATTCGCA 58.046 42.857 0.00 0.00 0.00 5.10
2246 4551 3.322369 ACGTTCTGTACATCATTCGCAA 58.678 40.909 0.00 0.00 0.00 4.85
2247 4552 3.743911 ACGTTCTGTACATCATTCGCAAA 59.256 39.130 0.00 0.00 0.00 3.68
2248 4553 4.212425 ACGTTCTGTACATCATTCGCAAAA 59.788 37.500 0.00 0.00 0.00 2.44
2249 4554 5.143660 CGTTCTGTACATCATTCGCAAAAA 58.856 37.500 0.00 0.00 0.00 1.94
2335 4640 8.563732 TGAAGATCTAAGAATCTATGACTGACG 58.436 37.037 0.00 0.00 34.90 4.35
2355 4660 3.695060 ACGTATATTCTCATCTAGCGGGG 59.305 47.826 0.00 0.00 0.00 5.73
2366 4671 3.036452 TCTAGCGGGGGTAATAACAGT 57.964 47.619 0.00 0.00 0.00 3.55
2368 4673 4.147321 TCTAGCGGGGGTAATAACAGTAG 58.853 47.826 0.00 0.00 0.00 2.57
2399 4704 7.781056 AGGTATTTCATTATTGGCGTCATTTT 58.219 30.769 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.971763 AGCTCGAATCTGTCTTTTCATACT 58.028 37.500 0.00 0.00 0.00 2.12
91 98 2.377531 ACCTCCGGGGAACTTGTTATTT 59.622 45.455 0.37 0.00 38.76 1.40
105 112 0.761187 ATCATGATGTGGACCTCCGG 59.239 55.000 7.59 0.00 39.43 5.14
106 113 2.893489 TCTATCATGATGTGGACCTCCG 59.107 50.000 18.72 0.00 39.43 4.63
124 131 8.262601 TGGCAGGTTCTGATTATATTCTTCTA 57.737 34.615 0.00 0.00 32.44 2.10
135 142 1.005097 TGATGCTGGCAGGTTCTGATT 59.995 47.619 17.64 0.00 32.44 2.57
140 147 1.022735 CTCATGATGCTGGCAGGTTC 58.977 55.000 17.64 0.00 0.00 3.62
143 150 0.818445 GGTCTCATGATGCTGGCAGG 60.818 60.000 17.64 0.00 0.00 4.85
147 154 1.693062 AGCTAGGTCTCATGATGCTGG 59.307 52.381 0.00 0.00 0.00 4.85
152 159 1.876799 CGTCGAGCTAGGTCTCATGAT 59.123 52.381 19.17 0.00 33.41 2.45
156 163 0.535797 TCTCGTCGAGCTAGGTCTCA 59.464 55.000 17.61 3.53 33.41 3.27
171 182 8.765219 ACGATAGATTTTCCATTATTGTTCTCG 58.235 33.333 0.00 0.00 41.38 4.04
183 194 6.371548 CCTCAACAAGAACGATAGATTTTCCA 59.628 38.462 0.00 0.00 41.38 3.53
206 217 4.792068 TGAGACTTTGTGTTTGGATTCCT 58.208 39.130 3.95 0.00 0.00 3.36
263 274 7.201702 TGTGTCACCCTATGGTTCAATATTA 57.798 36.000 0.00 0.00 44.75 0.98
305 326 9.584839 GCTGACATGTTAAATTTGAATTTTCAC 57.415 29.630 0.00 5.88 39.24 3.18
335 356 7.771361 TGTGGACAATACTACTTGTTTTCTTGA 59.229 33.333 0.00 0.00 39.40 3.02
347 370 3.226346 TCGTGCTGTGGACAATACTAC 57.774 47.619 0.00 0.00 0.00 2.73
355 378 4.996976 ACAGATCGTGCTGTGGAC 57.003 55.556 11.13 0.00 46.72 4.02
400 423 4.322198 CGGAGGGTGTAAAGTTTAGCTGTA 60.322 45.833 0.00 0.00 0.00 2.74
414 437 5.664457 ACTTATATTTAGGAACGGAGGGTGT 59.336 40.000 0.00 0.00 0.00 4.16
415 438 6.170846 ACTTATATTTAGGAACGGAGGGTG 57.829 41.667 0.00 0.00 0.00 4.61
417 440 7.228108 GGAAAACTTATATTTAGGAACGGAGGG 59.772 40.741 0.00 0.00 0.00 4.30
418 441 7.991460 AGGAAAACTTATATTTAGGAACGGAGG 59.009 37.037 0.00 0.00 0.00 4.30
419 442 8.959705 AGGAAAACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63
493 516 6.074005 CGAAGCAAAAAGAGTGAATCTACAC 58.926 40.000 0.00 0.00 37.23 2.90
494 517 5.758296 ACGAAGCAAAAAGAGTGAATCTACA 59.242 36.000 0.00 0.00 37.23 2.74
495 518 6.229561 ACGAAGCAAAAAGAGTGAATCTAC 57.770 37.500 0.00 0.00 37.23 2.59
496 519 7.602644 ACATACGAAGCAAAAAGAGTGAATCTA 59.397 33.333 0.00 0.00 37.23 1.98
497 520 6.428159 ACATACGAAGCAAAAAGAGTGAATCT 59.572 34.615 0.00 0.00 41.27 2.40
498 521 6.603095 ACATACGAAGCAAAAAGAGTGAATC 58.397 36.000 0.00 0.00 0.00 2.52
499 522 6.560253 ACATACGAAGCAAAAAGAGTGAAT 57.440 33.333 0.00 0.00 0.00 2.57
500 523 6.704493 ACTACATACGAAGCAAAAAGAGTGAA 59.296 34.615 0.00 0.00 0.00 3.18
501 524 6.220930 ACTACATACGAAGCAAAAAGAGTGA 58.779 36.000 0.00 0.00 0.00 3.41
502 525 6.467723 ACTACATACGAAGCAAAAAGAGTG 57.532 37.500 0.00 0.00 0.00 3.51
503 526 6.128902 CGAACTACATACGAAGCAAAAAGAGT 60.129 38.462 0.00 0.00 0.00 3.24
504 527 6.128902 ACGAACTACATACGAAGCAAAAAGAG 60.129 38.462 0.00 0.00 0.00 2.85
505 528 5.693104 ACGAACTACATACGAAGCAAAAAGA 59.307 36.000 0.00 0.00 0.00 2.52
506 529 5.912528 ACGAACTACATACGAAGCAAAAAG 58.087 37.500 0.00 0.00 0.00 2.27
507 530 5.910637 ACGAACTACATACGAAGCAAAAA 57.089 34.783 0.00 0.00 0.00 1.94
508 531 6.088483 CACTACGAACTACATACGAAGCAAAA 59.912 38.462 0.00 0.00 0.00 2.44
509 532 5.570206 CACTACGAACTACATACGAAGCAAA 59.430 40.000 0.00 0.00 0.00 3.68
510 533 5.090757 CACTACGAACTACATACGAAGCAA 58.909 41.667 0.00 0.00 0.00 3.91
511 534 4.392754 TCACTACGAACTACATACGAAGCA 59.607 41.667 0.00 0.00 0.00 3.91
512 535 4.901814 TCACTACGAACTACATACGAAGC 58.098 43.478 0.00 0.00 0.00 3.86
513 536 7.909121 AGATTTCACTACGAACTACATACGAAG 59.091 37.037 0.00 0.00 31.73 3.79
514 537 7.755591 AGATTTCACTACGAACTACATACGAA 58.244 34.615 0.00 0.00 31.73 3.85
515 538 7.279536 AGAGATTTCACTACGAACTACATACGA 59.720 37.037 0.00 0.00 31.73 3.43
516 539 7.408123 AGAGATTTCACTACGAACTACATACG 58.592 38.462 0.00 0.00 31.73 3.06
520 543 9.970395 TTTTTAGAGATTTCACTACGAACTACA 57.030 29.630 0.00 0.00 31.73 2.74
523 546 9.194271 GTCTTTTTAGAGATTTCACTACGAACT 57.806 33.333 0.00 0.00 31.73 3.01
524 547 9.194271 AGTCTTTTTAGAGATTTCACTACGAAC 57.806 33.333 0.00 0.00 31.73 3.95
525 548 9.760077 AAGTCTTTTTAGAGATTTCACTACGAA 57.240 29.630 0.00 0.00 0.00 3.85
545 568 9.819267 CTTCCTCCGTTTCTAAATATAAGTCTT 57.181 33.333 0.00 0.00 0.00 3.01
546 569 8.979534 ACTTCCTCCGTTTCTAAATATAAGTCT 58.020 33.333 0.00 0.00 0.00 3.24
557 580 8.967918 CCATGATATATACTTCCTCCGTTTCTA 58.032 37.037 0.00 0.00 0.00 2.10
558 581 7.579723 GCCATGATATATACTTCCTCCGTTTCT 60.580 40.741 0.00 0.00 0.00 2.52
559 582 6.535508 GCCATGATATATACTTCCTCCGTTTC 59.464 42.308 0.00 0.00 0.00 2.78
560 583 6.013725 TGCCATGATATATACTTCCTCCGTTT 60.014 38.462 0.00 0.00 0.00 3.60
561 584 5.483937 TGCCATGATATATACTTCCTCCGTT 59.516 40.000 0.00 0.00 0.00 4.44
562 585 5.023452 TGCCATGATATATACTTCCTCCGT 58.977 41.667 0.00 0.00 0.00 4.69
563 586 5.598416 TGCCATGATATATACTTCCTCCG 57.402 43.478 0.00 0.00 0.00 4.63
564 587 6.294473 CCATGCCATGATATATACTTCCTCC 58.706 44.000 6.18 0.00 0.00 4.30
565 588 5.762218 GCCATGCCATGATATATACTTCCTC 59.238 44.000 6.18 0.00 0.00 3.71
566 589 5.192321 TGCCATGCCATGATATATACTTCCT 59.808 40.000 6.18 0.00 0.00 3.36
567 590 5.439721 TGCCATGCCATGATATATACTTCC 58.560 41.667 6.18 0.00 0.00 3.46
568 591 6.544931 ACATGCCATGCCATGATATATACTTC 59.455 38.462 22.52 0.00 44.12 3.01
569 592 6.429151 ACATGCCATGCCATGATATATACTT 58.571 36.000 22.52 0.00 44.12 2.24
570 593 6.009908 ACATGCCATGCCATGATATATACT 57.990 37.500 22.52 0.00 44.12 2.12
571 594 5.824097 TGACATGCCATGCCATGATATATAC 59.176 40.000 22.52 6.01 44.12 1.47
572 595 6.003859 TGACATGCCATGCCATGATATATA 57.996 37.500 22.52 0.50 44.12 0.86
573 596 4.862371 TGACATGCCATGCCATGATATAT 58.138 39.130 22.52 0.00 44.12 0.86
574 597 4.304048 TGACATGCCATGCCATGATATA 57.696 40.909 22.52 3.71 44.12 0.86
575 598 3.163616 TGACATGCCATGCCATGATAT 57.836 42.857 22.52 0.67 44.12 1.63
576 599 2.660670 TGACATGCCATGCCATGATA 57.339 45.000 22.52 8.34 44.12 2.15
577 600 1.686587 CTTGACATGCCATGCCATGAT 59.313 47.619 22.52 7.46 44.12 2.45
578 601 1.107945 CTTGACATGCCATGCCATGA 58.892 50.000 22.52 0.00 44.12 3.07
579 602 0.821517 ACTTGACATGCCATGCCATG 59.178 50.000 14.80 14.80 46.19 3.66
580 603 0.821517 CACTTGACATGCCATGCCAT 59.178 50.000 4.17 0.00 0.00 4.40
581 604 1.252215 CCACTTGACATGCCATGCCA 61.252 55.000 4.17 0.00 0.00 4.92
582 605 0.966875 TCCACTTGACATGCCATGCC 60.967 55.000 4.17 0.00 0.00 4.40
583 606 0.171903 GTCCACTTGACATGCCATGC 59.828 55.000 4.17 0.00 43.85 4.06
684 716 2.367567 ACTTCTCTTCCGCAACAAGGTA 59.632 45.455 0.00 0.00 0.00 3.08
694 726 0.250295 TGGTGCCAACTTCTCTTCCG 60.250 55.000 0.00 0.00 0.00 4.30
753 790 1.242076 GCCATGAGCAAGTGAGTTGT 58.758 50.000 1.56 0.00 42.97 3.32
782 827 4.052159 AGAAGATTATGTGTGAGCTCCG 57.948 45.455 12.15 0.00 0.00 4.63
830 912 1.110518 TCTGTGGTGCCACTCGTACA 61.111 55.000 20.46 0.48 46.30 2.90
869 966 6.518369 CGGTGGATTTATATAGGCTCAAGACA 60.518 42.308 0.00 0.00 0.00 3.41
870 967 5.869888 CGGTGGATTTATATAGGCTCAAGAC 59.130 44.000 0.00 0.00 0.00 3.01
871 968 5.046591 CCGGTGGATTTATATAGGCTCAAGA 60.047 44.000 0.00 0.00 0.00 3.02
872 969 5.178797 CCGGTGGATTTATATAGGCTCAAG 58.821 45.833 0.00 0.00 0.00 3.02
873 970 4.564821 GCCGGTGGATTTATATAGGCTCAA 60.565 45.833 1.90 0.00 40.12 3.02
874 971 3.055385 GCCGGTGGATTTATATAGGCTCA 60.055 47.826 1.90 0.00 40.12 4.26
880 977 3.827876 TGAGACGCCGGTGGATTTATATA 59.172 43.478 21.14 0.00 0.00 0.86
881 978 2.631062 TGAGACGCCGGTGGATTTATAT 59.369 45.455 21.14 0.00 0.00 0.86
955 1054 4.984785 TCTGTGTTCTTGAGTTCTTGATCG 59.015 41.667 0.00 0.00 0.00 3.69
984 1083 3.388308 AGCCATCGATCGATTCTCTTTG 58.612 45.455 27.45 15.82 31.62 2.77
985 1084 3.742433 AGCCATCGATCGATTCTCTTT 57.258 42.857 27.45 3.33 31.62 2.52
986 1085 3.365465 CGTAGCCATCGATCGATTCTCTT 60.365 47.826 27.45 13.68 31.62 2.85
987 1086 2.160615 CGTAGCCATCGATCGATTCTCT 59.839 50.000 27.45 23.11 31.62 3.10
988 1087 2.095668 ACGTAGCCATCGATCGATTCTC 60.096 50.000 27.45 17.99 31.62 2.87
989 1088 1.880675 ACGTAGCCATCGATCGATTCT 59.119 47.619 27.45 25.59 31.62 2.40
1380 1501 1.674651 CTCCCACGTCCTCTGTCGA 60.675 63.158 0.00 0.00 0.00 4.20
1383 1504 1.606889 GGTCTCCCACGTCCTCTGT 60.607 63.158 0.00 0.00 0.00 3.41
1385 1506 2.361357 CGGTCTCCCACGTCCTCT 60.361 66.667 0.00 0.00 0.00 3.69
1517 1712 0.249073 ATCCTGATCGTACGCTGCAC 60.249 55.000 11.24 0.51 0.00 4.57
1522 1717 1.488527 GTCCAATCCTGATCGTACGC 58.511 55.000 11.24 0.00 0.00 4.42
1598 1834 3.258372 ACAGGACGCACAAGAGATCTTTA 59.742 43.478 0.00 0.00 33.11 1.85
1686 1980 6.198639 TCCTTCTATTACCAAAGAGAGCTCT 58.801 40.000 18.28 18.28 42.75 4.09
1687 1981 6.472686 TCCTTCTATTACCAAAGAGAGCTC 57.527 41.667 5.27 5.27 34.57 4.09
1730 2034 4.627900 GGCAACTTTCCAAAAAGAAACGAA 59.372 37.500 4.99 0.00 43.90 3.85
1752 4027 4.691860 ATTTCGTGCAGAATCAAAGAGG 57.308 40.909 0.00 0.00 38.86 3.69
1786 4061 2.556766 TGACTGACATGGATTGGGGTA 58.443 47.619 0.00 0.00 0.00 3.69
1787 4062 1.371467 TGACTGACATGGATTGGGGT 58.629 50.000 0.00 0.00 0.00 4.95
1788 4063 2.742428 ATGACTGACATGGATTGGGG 57.258 50.000 0.00 0.00 37.87 4.96
1789 4064 4.275810 AGAAATGACTGACATGGATTGGG 58.724 43.478 0.00 0.00 39.39 4.12
1790 4065 5.909621 AAGAAATGACTGACATGGATTGG 57.090 39.130 0.00 0.00 39.39 3.16
1791 4066 7.337689 TCCTTAAGAAATGACTGACATGGATTG 59.662 37.037 3.36 0.00 39.39 2.67
1792 4067 7.405292 TCCTTAAGAAATGACTGACATGGATT 58.595 34.615 3.36 0.00 39.39 3.01
1793 4068 6.962182 TCCTTAAGAAATGACTGACATGGAT 58.038 36.000 3.36 0.00 39.39 3.41
1794 4069 6.373005 TCCTTAAGAAATGACTGACATGGA 57.627 37.500 3.36 0.00 39.39 3.41
1795 4070 6.459298 GCATCCTTAAGAAATGACTGACATGG 60.459 42.308 17.20 0.00 39.39 3.66
1796 4071 6.459298 GGCATCCTTAAGAAATGACTGACATG 60.459 42.308 17.20 0.00 39.39 3.21
1797 4072 5.591877 GGCATCCTTAAGAAATGACTGACAT 59.408 40.000 17.20 0.00 41.45 3.06
1852 4139 6.126863 TGACAAGAGTGACCATTTATCCTT 57.873 37.500 0.00 0.00 0.00 3.36
1854 4141 6.173339 TCTTGACAAGAGTGACCATTTATCC 58.827 40.000 13.99 0.00 32.71 2.59
1855 4142 7.856145 ATCTTGACAAGAGTGACCATTTATC 57.144 36.000 21.78 0.00 41.61 1.75
1856 4143 9.167311 GTAATCTTGACAAGAGTGACCATTTAT 57.833 33.333 24.50 1.57 41.61 1.40
1921 4226 0.240145 CACTTGTGCCTGCACTGATG 59.760 55.000 21.62 13.06 46.30 3.07
1922 4227 1.521450 GCACTTGTGCCTGCACTGAT 61.521 55.000 21.62 5.52 46.30 2.90
1923 4228 2.188829 GCACTTGTGCCTGCACTGA 61.189 57.895 21.62 10.46 46.30 3.41
1924 4229 2.126417 GAGCACTTGTGCCTGCACTG 62.126 60.000 21.62 16.25 46.30 3.66
1925 4230 1.895707 GAGCACTTGTGCCTGCACT 60.896 57.895 21.62 2.58 46.30 4.40
1926 4231 1.521450 ATGAGCACTTGTGCCTGCAC 61.521 55.000 20.39 15.15 46.33 4.57
1927 4232 0.036590 TATGAGCACTTGTGCCTGCA 59.963 50.000 20.39 16.29 35.73 4.41
1928 4233 1.386533 ATATGAGCACTTGTGCCTGC 58.613 50.000 20.39 11.76 34.90 4.85
1929 4234 3.310774 GTGTATATGAGCACTTGTGCCTG 59.689 47.826 20.39 0.00 34.90 4.85
1930 4235 3.535561 GTGTATATGAGCACTTGTGCCT 58.464 45.455 20.39 9.29 34.90 4.75
1931 4236 2.285220 CGTGTATATGAGCACTTGTGCC 59.715 50.000 20.39 13.07 33.78 5.01
1932 4237 2.285834 GCGTGTATATGAGCACTTGTGC 60.286 50.000 16.98 16.98 33.78 4.57
1933 4238 2.034591 CGCGTGTATATGAGCACTTGTG 60.035 50.000 0.00 0.00 33.78 3.33
1934 4239 2.193447 CGCGTGTATATGAGCACTTGT 58.807 47.619 0.00 0.00 33.78 3.16
1935 4240 1.071239 GCGCGTGTATATGAGCACTTG 60.071 52.381 8.43 0.00 38.35 3.16
1936 4241 1.209128 GCGCGTGTATATGAGCACTT 58.791 50.000 8.43 0.00 38.35 3.16
1937 4242 0.102300 TGCGCGTGTATATGAGCACT 59.898 50.000 8.43 0.00 42.50 4.40
1938 4243 2.588731 TGCGCGTGTATATGAGCAC 58.411 52.632 8.43 0.00 42.50 4.40
1940 4245 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
1941 4246 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
1942 4247 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
1943 4248 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
1944 4249 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
1945 4250 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
1946 4251 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
1947 4252 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
1948 4253 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
1949 4254 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
1950 4255 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
1951 4256 1.019278 AAAGGGTGAGTGTATGCGCG 61.019 55.000 0.00 0.00 0.00 6.86
1952 4257 1.135689 CAAAAGGGTGAGTGTATGCGC 60.136 52.381 0.00 0.00 0.00 6.09
1953 4258 2.422597 TCAAAAGGGTGAGTGTATGCG 58.577 47.619 0.00 0.00 0.00 4.73
1954 4259 3.364964 CGTTCAAAAGGGTGAGTGTATGC 60.365 47.826 0.00 0.00 0.00 3.14
1955 4260 3.364964 GCGTTCAAAAGGGTGAGTGTATG 60.365 47.826 0.00 0.00 0.00 2.39
1956 4261 2.812011 GCGTTCAAAAGGGTGAGTGTAT 59.188 45.455 0.00 0.00 0.00 2.29
1957 4262 2.215196 GCGTTCAAAAGGGTGAGTGTA 58.785 47.619 0.00 0.00 0.00 2.90
1958 4263 1.021968 GCGTTCAAAAGGGTGAGTGT 58.978 50.000 0.00 0.00 0.00 3.55
1959 4264 1.021202 TGCGTTCAAAAGGGTGAGTG 58.979 50.000 0.00 0.00 0.00 3.51
1960 4265 1.021968 GTGCGTTCAAAAGGGTGAGT 58.978 50.000 0.00 0.00 0.00 3.41
1961 4266 1.021202 TGTGCGTTCAAAAGGGTGAG 58.979 50.000 0.00 0.00 0.00 3.51
1962 4267 0.736053 GTGTGCGTTCAAAAGGGTGA 59.264 50.000 0.00 0.00 0.00 4.02
1963 4268 0.453793 TGTGTGCGTTCAAAAGGGTG 59.546 50.000 0.00 0.00 0.00 4.61
1964 4269 0.454196 GTGTGTGCGTTCAAAAGGGT 59.546 50.000 0.00 0.00 0.00 4.34
1965 4270 0.591236 CGTGTGTGCGTTCAAAAGGG 60.591 55.000 0.00 0.00 0.00 3.95
1966 4271 1.199852 GCGTGTGTGCGTTCAAAAGG 61.200 55.000 0.00 0.00 0.00 3.11
1967 4272 0.522286 TGCGTGTGTGCGTTCAAAAG 60.522 50.000 0.00 0.00 37.81 2.27
1968 4273 0.794981 GTGCGTGTGTGCGTTCAAAA 60.795 50.000 0.00 0.00 37.81 2.44
1969 4274 1.226156 GTGCGTGTGTGCGTTCAAA 60.226 52.632 0.00 0.00 37.81 2.69
1970 4275 2.391389 TGTGCGTGTGTGCGTTCAA 61.391 52.632 0.00 0.00 37.81 2.69
1971 4276 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
1972 4277 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
1973 4278 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
1976 4281 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
1977 4282 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
1978 4283 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
1979 4284 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
1980 4285 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
1981 4286 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
1982 4287 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
1983 4288 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
1984 4289 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
1985 4290 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
1986 4291 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
1987 4292 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
1988 4293 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
1989 4294 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
1990 4295 1.133009 AGAGGTGCTCATAGGGGTAGG 60.133 57.143 0.00 0.00 32.06 3.18
1991 4296 1.967066 CAGAGGTGCTCATAGGGGTAG 59.033 57.143 0.00 0.00 32.06 3.18
1992 4297 1.573857 TCAGAGGTGCTCATAGGGGTA 59.426 52.381 0.00 0.00 32.06 3.69
1993 4298 0.339859 TCAGAGGTGCTCATAGGGGT 59.660 55.000 0.00 0.00 32.06 4.95
1994 4299 1.047002 CTCAGAGGTGCTCATAGGGG 58.953 60.000 0.00 0.00 32.06 4.79
1995 4300 1.962807 CTCTCAGAGGTGCTCATAGGG 59.037 57.143 0.00 0.00 32.06 3.53
1996 4301 2.622942 GTCTCTCAGAGGTGCTCATAGG 59.377 54.545 0.57 0.00 32.06 2.57
1997 4302 3.316029 CAGTCTCTCAGAGGTGCTCATAG 59.684 52.174 0.57 0.00 32.06 2.23
1998 4303 3.054065 TCAGTCTCTCAGAGGTGCTCATA 60.054 47.826 0.57 0.00 32.06 2.15
1999 4304 2.101783 CAGTCTCTCAGAGGTGCTCAT 58.898 52.381 0.57 0.00 32.06 2.90
2000 4305 1.074566 TCAGTCTCTCAGAGGTGCTCA 59.925 52.381 0.57 0.00 32.06 4.26
2001 4306 1.745087 CTCAGTCTCTCAGAGGTGCTC 59.255 57.143 0.57 0.00 0.00 4.26
2002 4307 1.838112 CTCAGTCTCTCAGAGGTGCT 58.162 55.000 0.57 0.00 0.00 4.40
2003 4308 0.173255 GCTCAGTCTCTCAGAGGTGC 59.827 60.000 0.57 0.00 31.57 5.01
2004 4309 0.817013 GGCTCAGTCTCTCAGAGGTG 59.183 60.000 0.57 0.02 31.57 4.00
2005 4310 0.407528 TGGCTCAGTCTCTCAGAGGT 59.592 55.000 0.57 0.00 31.57 3.85
2006 4311 1.105457 CTGGCTCAGTCTCTCAGAGG 58.895 60.000 0.57 0.00 31.57 3.69
2007 4312 0.457035 GCTGGCTCAGTCTCTCAGAG 59.543 60.000 0.00 0.00 33.43 3.35
2008 4313 0.251519 TGCTGGCTCAGTCTCTCAGA 60.252 55.000 4.45 0.00 33.43 3.27
2009 4314 0.825410 ATGCTGGCTCAGTCTCTCAG 59.175 55.000 4.45 0.00 33.43 3.35
2010 4315 1.753649 GTATGCTGGCTCAGTCTCTCA 59.246 52.381 4.45 0.00 33.43 3.27
2011 4316 1.068434 GGTATGCTGGCTCAGTCTCTC 59.932 57.143 4.45 0.00 33.43 3.20
2012 4317 1.118838 GGTATGCTGGCTCAGTCTCT 58.881 55.000 4.45 0.00 33.43 3.10
2013 4318 0.826715 TGGTATGCTGGCTCAGTCTC 59.173 55.000 4.45 0.00 33.43 3.36
2014 4319 1.415659 GATGGTATGCTGGCTCAGTCT 59.584 52.381 4.45 0.00 33.43 3.24
2015 4320 1.415659 AGATGGTATGCTGGCTCAGTC 59.584 52.381 4.45 0.00 33.43 3.51
2016 4321 1.504912 AGATGGTATGCTGGCTCAGT 58.495 50.000 4.45 0.00 33.43 3.41
2017 4322 2.158856 TCAAGATGGTATGCTGGCTCAG 60.159 50.000 0.00 0.00 34.12 3.35
2018 4323 1.839354 TCAAGATGGTATGCTGGCTCA 59.161 47.619 0.00 0.00 0.00 4.26
2019 4324 2.627515 TCAAGATGGTATGCTGGCTC 57.372 50.000 0.00 0.00 0.00 4.70
2020 4325 3.370840 TTTCAAGATGGTATGCTGGCT 57.629 42.857 0.00 0.00 0.00 4.75
2021 4326 4.660789 AATTTCAAGATGGTATGCTGGC 57.339 40.909 0.00 0.00 0.00 4.85
2022 4327 6.038161 TCGTAAATTTCAAGATGGTATGCTGG 59.962 38.462 0.00 0.00 0.00 4.85
2023 4328 7.015226 TCGTAAATTTCAAGATGGTATGCTG 57.985 36.000 0.00 0.00 0.00 4.41
2024 4329 7.624360 TTCGTAAATTTCAAGATGGTATGCT 57.376 32.000 0.00 0.00 0.00 3.79
2025 4330 6.414987 GCTTCGTAAATTTCAAGATGGTATGC 59.585 38.462 0.00 0.00 0.00 3.14
2026 4331 7.471721 TGCTTCGTAAATTTCAAGATGGTATG 58.528 34.615 0.00 0.00 0.00 2.39
2027 4332 7.624360 TGCTTCGTAAATTTCAAGATGGTAT 57.376 32.000 0.00 0.00 0.00 2.73
2028 4333 7.302524 GTTGCTTCGTAAATTTCAAGATGGTA 58.697 34.615 0.00 0.00 0.00 3.25
2029 4334 5.957842 TGCTTCGTAAATTTCAAGATGGT 57.042 34.783 0.00 0.00 0.00 3.55
2030 4335 5.572896 GGTTGCTTCGTAAATTTCAAGATGG 59.427 40.000 0.00 0.00 0.00 3.51
2031 4336 5.283717 CGGTTGCTTCGTAAATTTCAAGATG 59.716 40.000 0.00 0.00 0.00 2.90
2032 4337 5.048991 ACGGTTGCTTCGTAAATTTCAAGAT 60.049 36.000 0.00 0.00 39.22 2.40
2033 4338 4.273969 ACGGTTGCTTCGTAAATTTCAAGA 59.726 37.500 0.00 0.00 39.22 3.02
2034 4339 4.533222 ACGGTTGCTTCGTAAATTTCAAG 58.467 39.130 0.00 0.00 39.22 3.02
2035 4340 4.555348 ACGGTTGCTTCGTAAATTTCAA 57.445 36.364 0.00 0.00 39.22 2.69
2036 4341 4.152759 CCTACGGTTGCTTCGTAAATTTCA 59.847 41.667 0.00 0.00 41.62 2.69
2037 4342 4.644954 CCTACGGTTGCTTCGTAAATTTC 58.355 43.478 0.00 0.00 41.62 2.17
2038 4343 3.120095 GCCTACGGTTGCTTCGTAAATTT 60.120 43.478 0.00 0.00 41.62 1.82
2039 4344 2.417586 GCCTACGGTTGCTTCGTAAATT 59.582 45.455 7.80 0.00 41.62 1.82
2040 4345 2.004733 GCCTACGGTTGCTTCGTAAAT 58.995 47.619 7.80 0.00 41.62 1.40
2041 4346 1.270199 TGCCTACGGTTGCTTCGTAAA 60.270 47.619 7.80 0.00 41.62 2.01
2042 4347 0.317799 TGCCTACGGTTGCTTCGTAA 59.682 50.000 7.80 0.00 41.62 3.18
2043 4348 0.388907 GTGCCTACGGTTGCTTCGTA 60.389 55.000 4.36 6.60 41.38 3.43
2044 4349 1.666872 GTGCCTACGGTTGCTTCGT 60.667 57.895 5.13 5.13 43.64 3.85
2045 4350 2.388232 GGTGCCTACGGTTGCTTCG 61.388 63.158 4.36 0.00 0.00 3.79
2046 4351 1.003718 AGGTGCCTACGGTTGCTTC 60.004 57.895 4.36 0.00 0.00 3.86
2047 4352 1.003718 GAGGTGCCTACGGTTGCTT 60.004 57.895 0.00 0.00 0.00 3.91
2048 4353 2.663196 GAGGTGCCTACGGTTGCT 59.337 61.111 0.00 0.00 0.00 3.91
2049 4354 2.813908 CGAGGTGCCTACGGTTGC 60.814 66.667 0.00 0.00 0.00 4.17
2050 4355 2.813908 GCGAGGTGCCTACGGTTG 60.814 66.667 10.41 0.00 37.76 3.77
2051 4356 4.430765 CGCGAGGTGCCTACGGTT 62.431 66.667 0.00 0.00 42.08 4.44
2053 4358 4.554363 CTCGCGAGGTGCCTACGG 62.554 72.222 28.40 0.00 42.08 4.02
2055 4360 4.129737 TGCTCGCGAGGTGCCTAC 62.130 66.667 35.10 18.14 42.08 3.18
2056 4361 4.129737 GTGCTCGCGAGGTGCCTA 62.130 66.667 35.10 6.51 42.08 3.93
2062 4367 2.859273 AAATCCTGGTGCTCGCGAGG 62.859 60.000 35.10 19.98 0.00 4.63
2063 4368 1.448540 AAATCCTGGTGCTCGCGAG 60.449 57.895 31.37 31.37 0.00 5.03
2064 4369 1.741401 CAAATCCTGGTGCTCGCGA 60.741 57.895 9.26 9.26 0.00 5.87
2065 4370 1.298157 TTCAAATCCTGGTGCTCGCG 61.298 55.000 0.00 0.00 0.00 5.87
2066 4371 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
2067 4372 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
2068 4373 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
2069 4374 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
2070 4375 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
2086 4391 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
2087 4392 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
2088 4393 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
2089 4394 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
2100 4405 4.924305 TGGTTACGTGGATAGTGGTATC 57.076 45.455 0.00 0.00 35.19 2.24
2101 4406 5.145564 AGATGGTTACGTGGATAGTGGTAT 58.854 41.667 0.00 0.00 0.00 2.73
2102 4407 4.539726 AGATGGTTACGTGGATAGTGGTA 58.460 43.478 0.00 0.00 0.00 3.25
2103 4408 3.371965 AGATGGTTACGTGGATAGTGGT 58.628 45.455 0.00 0.00 0.00 4.16
2104 4409 3.383505 TGAGATGGTTACGTGGATAGTGG 59.616 47.826 0.00 0.00 0.00 4.00
2105 4410 4.649088 TGAGATGGTTACGTGGATAGTG 57.351 45.455 0.00 0.00 0.00 2.74
2106 4411 4.142004 GGTTGAGATGGTTACGTGGATAGT 60.142 45.833 0.00 0.00 0.00 2.12
2107 4412 4.142026 TGGTTGAGATGGTTACGTGGATAG 60.142 45.833 0.00 0.00 0.00 2.08
2108 4413 3.770388 TGGTTGAGATGGTTACGTGGATA 59.230 43.478 0.00 0.00 0.00 2.59
2109 4414 2.569853 TGGTTGAGATGGTTACGTGGAT 59.430 45.455 0.00 0.00 0.00 3.41
2110 4415 1.972075 TGGTTGAGATGGTTACGTGGA 59.028 47.619 0.00 0.00 0.00 4.02
2111 4416 2.073816 GTGGTTGAGATGGTTACGTGG 58.926 52.381 0.00 0.00 0.00 4.94
2112 4417 2.736721 CTGTGGTTGAGATGGTTACGTG 59.263 50.000 0.00 0.00 0.00 4.49
2113 4418 2.289444 CCTGTGGTTGAGATGGTTACGT 60.289 50.000 0.00 0.00 0.00 3.57
2114 4419 2.289444 ACCTGTGGTTGAGATGGTTACG 60.289 50.000 0.00 0.00 27.29 3.18
2115 4420 3.418684 ACCTGTGGTTGAGATGGTTAC 57.581 47.619 0.00 0.00 27.29 2.50
2129 4434 1.732259 GACATAGCGAACCAACCTGTG 59.268 52.381 0.00 0.00 0.00 3.66
2130 4435 1.623811 AGACATAGCGAACCAACCTGT 59.376 47.619 0.00 0.00 0.00 4.00
2131 4436 2.386661 AGACATAGCGAACCAACCTG 57.613 50.000 0.00 0.00 0.00 4.00
2132 4437 2.301870 TGAAGACATAGCGAACCAACCT 59.698 45.455 0.00 0.00 0.00 3.50
2133 4438 2.695359 TGAAGACATAGCGAACCAACC 58.305 47.619 0.00 0.00 0.00 3.77
2134 4439 4.946784 ATTGAAGACATAGCGAACCAAC 57.053 40.909 0.00 0.00 0.00 3.77
2135 4440 5.957842 AAATTGAAGACATAGCGAACCAA 57.042 34.783 0.00 0.00 0.00 3.67
2136 4441 6.653320 AGTTAAATTGAAGACATAGCGAACCA 59.347 34.615 0.00 0.00 0.00 3.67
2137 4442 7.073342 AGTTAAATTGAAGACATAGCGAACC 57.927 36.000 0.00 0.00 0.00 3.62
2138 4443 7.846592 GCTAGTTAAATTGAAGACATAGCGAAC 59.153 37.037 0.00 0.00 0.00 3.95
2139 4444 7.764443 AGCTAGTTAAATTGAAGACATAGCGAA 59.236 33.333 0.00 0.00 38.45 4.70
2140 4445 7.265673 AGCTAGTTAAATTGAAGACATAGCGA 58.734 34.615 0.00 0.00 38.45 4.93
2141 4446 7.470289 AGCTAGTTAAATTGAAGACATAGCG 57.530 36.000 0.00 0.00 38.45 4.26
2160 4465 7.934120 GGGGGCAGATAATATATGTTTAGCTAG 59.066 40.741 0.00 0.00 0.00 3.42
2164 4469 8.877864 TTTGGGGGCAGATAATATATGTTTAG 57.122 34.615 0.00 0.00 0.00 1.85
2174 4479 6.043127 GGATGTAAATTTTGGGGGCAGATAAT 59.957 38.462 0.00 0.00 0.00 1.28
2179 4484 3.106827 AGGATGTAAATTTTGGGGGCAG 58.893 45.455 0.00 0.00 0.00 4.85
2192 4497 9.519191 CCATTGACCATGAATATTAGGATGTAA 57.481 33.333 0.00 0.00 34.31 2.41
2195 4500 7.666804 TGACCATTGACCATGAATATTAGGATG 59.333 37.037 0.00 2.48 34.31 3.51
2196 4501 7.758609 TGACCATTGACCATGAATATTAGGAT 58.241 34.615 0.00 0.00 34.31 3.24
2199 4504 8.625786 TCATGACCATTGACCATGAATATTAG 57.374 34.615 14.38 0.00 42.33 1.73
2214 4519 4.637276 TGTACAGAACGTTCATGACCATT 58.363 39.130 28.78 10.76 0.00 3.16
2216 4521 3.737032 TGTACAGAACGTTCATGACCA 57.263 42.857 28.78 19.35 0.00 4.02
2217 4522 4.242475 TGATGTACAGAACGTTCATGACC 58.758 43.478 28.78 17.56 35.91 4.02
2219 4524 5.288472 CGAATGATGTACAGAACGTTCATGA 59.712 40.000 28.78 9.57 35.91 3.07
2220 4525 5.484085 CGAATGATGTACAGAACGTTCATG 58.516 41.667 28.78 23.44 35.91 3.07
2221 4526 4.032900 GCGAATGATGTACAGAACGTTCAT 59.967 41.667 28.78 18.77 38.23 2.57
2222 4527 3.366724 GCGAATGATGTACAGAACGTTCA 59.633 43.478 28.78 10.03 0.00 3.18
2223 4528 3.366724 TGCGAATGATGTACAGAACGTTC 59.633 43.478 20.71 20.71 0.00 3.95
2224 4529 3.322369 TGCGAATGATGTACAGAACGTT 58.678 40.909 0.00 0.00 0.00 3.99
2225 4530 2.954316 TGCGAATGATGTACAGAACGT 58.046 42.857 0.33 0.00 0.00 3.99
2226 4531 3.989705 TTGCGAATGATGTACAGAACG 57.010 42.857 0.33 4.26 0.00 3.95
2312 4617 9.733556 ATACGTCAGTCATAGATTCTTAGATCT 57.266 33.333 0.00 0.00 39.59 2.75
2332 4637 4.201930 CCCCGCTAGATGAGAATATACGTC 60.202 50.000 0.00 0.00 0.00 4.34
2333 4638 3.695060 CCCCGCTAGATGAGAATATACGT 59.305 47.826 0.00 0.00 0.00 3.57
2335 4640 4.024670 ACCCCCGCTAGATGAGAATATAC 58.975 47.826 0.00 0.00 0.00 1.47
2343 4648 3.576982 CTGTTATTACCCCCGCTAGATGA 59.423 47.826 0.00 0.00 0.00 2.92
2349 4654 1.415289 GCTACTGTTATTACCCCCGCT 59.585 52.381 0.00 0.00 0.00 5.52
2355 4660 3.635836 ACCTCGAGGCTACTGTTATTACC 59.364 47.826 31.56 0.00 39.32 2.85
2366 4671 6.464222 CCAATAATGAAATACCTCGAGGCTA 58.536 40.000 31.56 21.33 39.32 3.93
2368 4673 4.083271 GCCAATAATGAAATACCTCGAGGC 60.083 45.833 31.56 15.01 39.32 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.