Multiple sequence alignment - TraesCS7B01G444400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G444400 chr7B 100.000 2414 0 0 1 2414 708917815 708915402 0.000000e+00 4458
1 TraesCS7B01G444400 chr7B 95.034 725 30 4 1669 2393 375977144 375976426 0.000000e+00 1134
2 TraesCS7B01G444400 chr7B 95.034 725 31 3 1669 2393 486415842 486415123 0.000000e+00 1134
3 TraesCS7B01G444400 chr7B 90.544 423 36 4 995 1415 451364335 451363915 7.540000e-155 556
4 TraesCS7B01G444400 chr7B 74.407 590 124 23 14 593 439594731 439595303 6.710000e-56 228
5 TraesCS7B01G444400 chr7B 74.809 524 110 13 41 545 261022891 261022371 1.450000e-52 217
6 TraesCS7B01G444400 chr7A 89.879 988 64 23 705 1667 708625507 708624531 0.000000e+00 1238
7 TraesCS7B01G444400 chr7A 83.748 603 74 22 819 1415 484602215 484601631 1.260000e-152 549
8 TraesCS7B01G444400 chr7A 93.838 357 18 2 1669 2025 15548692 15548340 3.530000e-148 534
9 TraesCS7B01G444400 chr7A 76.382 597 116 19 40 617 549788659 549789249 5.050000e-77 298
10 TraesCS7B01G444400 chr7A 86.325 117 15 1 335 451 454056494 454056609 2.520000e-25 126
11 TraesCS7B01G444400 chr7D 90.461 954 49 23 747 1667 615898043 615897099 0.000000e+00 1219
12 TraesCS7B01G444400 chr7D 88.478 460 42 10 959 1415 434169909 434169458 1.630000e-151 545
13 TraesCS7B01G444400 chr7D 76.412 602 115 19 34 615 80327030 80326436 1.400000e-77 300
14 TraesCS7B01G444400 chr1B 92.345 614 29 8 1669 2281 309653598 309653002 0.000000e+00 857
15 TraesCS7B01G444400 chr1B 79.747 237 36 8 34 263 7614033 7613802 6.910000e-36 161
16 TraesCS7B01G444400 chr6A 94.633 354 15 2 1669 2022 471745054 471745403 1.630000e-151 545
17 TraesCS7B01G444400 chr6A 96.414 251 8 1 2143 2393 471745410 471745659 1.730000e-111 412
18 TraesCS7B01G444400 chr2A 94.633 354 15 2 1669 2022 544893932 544894281 1.630000e-151 545
19 TraesCS7B01G444400 chr2A 77.966 177 36 3 409 584 82122279 82122453 9.130000e-20 108
20 TraesCS7B01G444400 chr2A 78.846 156 32 1 396 551 82183557 82183711 1.180000e-18 104
21 TraesCS7B01G444400 chr4A 94.587 351 15 2 1675 2025 613024204 613023858 7.590000e-150 540
22 TraesCS7B01G444400 chr4A 96.414 251 8 1 2143 2393 613023854 613023605 1.730000e-111 412
23 TraesCS7B01G444400 chr1A 94.350 354 16 2 1669 2022 523732779 523733128 7.590000e-150 540
24 TraesCS7B01G444400 chr1A 96.414 251 8 1 2143 2393 20730345 20730594 1.730000e-111 412
25 TraesCS7B01G444400 chr1A 72.137 524 114 23 16 524 576881096 576881602 1.950000e-26 130
26 TraesCS7B01G444400 chr5A 93.838 357 18 2 1669 2025 618397304 618396952 3.530000e-148 534
27 TraesCS7B01G444400 chr5A 96.813 251 7 1 2143 2393 618396948 618396699 3.710000e-113 418
28 TraesCS7B01G444400 chr3A 94.302 351 16 2 1675 2025 62602234 62601888 3.530000e-148 534
29 TraesCS7B01G444400 chr3A 96.414 251 8 1 2143 2393 62601884 62601635 1.730000e-111 412
30 TraesCS7B01G444400 chr6B 94.921 315 14 2 2079 2393 15545446 15545758 2.160000e-135 492
31 TraesCS7B01G444400 chr2D 77.558 606 111 23 29 617 30162870 30162273 2.300000e-90 342
32 TraesCS7B01G444400 chr2D 72.870 446 100 14 43 469 632051567 632052010 1.510000e-27 134
33 TraesCS7B01G444400 chr6D 75.914 602 119 23 29 615 358501980 358502570 3.930000e-73 285
34 TraesCS7B01G444400 chr3D 75.482 571 115 23 9 564 429297644 429297084 3.080000e-64 255
35 TraesCS7B01G444400 chr3D 80.349 229 38 6 29 251 447616730 447616957 1.480000e-37 167
36 TraesCS7B01G444400 chr5D 93.525 139 9 0 1529 1667 523688681 523688543 8.750000e-50 207
37 TraesCS7B01G444400 chr1D 92.806 139 10 0 1529 1667 32076288 32076426 4.070000e-48 202
38 TraesCS7B01G444400 chrUn 74.510 255 61 4 336 589 468771096 468771347 9.130000e-20 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G444400 chr7B 708915402 708917815 2413 True 4458.0 4458 100.0000 1 2414 1 chr7B.!!$R5 2413
1 TraesCS7B01G444400 chr7B 375976426 375977144 718 True 1134.0 1134 95.0340 1669 2393 1 chr7B.!!$R2 724
2 TraesCS7B01G444400 chr7B 486415123 486415842 719 True 1134.0 1134 95.0340 1669 2393 1 chr7B.!!$R4 724
3 TraesCS7B01G444400 chr7B 439594731 439595303 572 False 228.0 228 74.4070 14 593 1 chr7B.!!$F1 579
4 TraesCS7B01G444400 chr7B 261022371 261022891 520 True 217.0 217 74.8090 41 545 1 chr7B.!!$R1 504
5 TraesCS7B01G444400 chr7A 708624531 708625507 976 True 1238.0 1238 89.8790 705 1667 1 chr7A.!!$R3 962
6 TraesCS7B01G444400 chr7A 484601631 484602215 584 True 549.0 549 83.7480 819 1415 1 chr7A.!!$R2 596
7 TraesCS7B01G444400 chr7A 549788659 549789249 590 False 298.0 298 76.3820 40 617 1 chr7A.!!$F2 577
8 TraesCS7B01G444400 chr7D 615897099 615898043 944 True 1219.0 1219 90.4610 747 1667 1 chr7D.!!$R3 920
9 TraesCS7B01G444400 chr7D 80326436 80327030 594 True 300.0 300 76.4120 34 615 1 chr7D.!!$R1 581
10 TraesCS7B01G444400 chr1B 309653002 309653598 596 True 857.0 857 92.3450 1669 2281 1 chr1B.!!$R2 612
11 TraesCS7B01G444400 chr6A 471745054 471745659 605 False 478.5 545 95.5235 1669 2393 2 chr6A.!!$F1 724
12 TraesCS7B01G444400 chr4A 613023605 613024204 599 True 476.0 540 95.5005 1675 2393 2 chr4A.!!$R1 718
13 TraesCS7B01G444400 chr5A 618396699 618397304 605 True 476.0 534 95.3255 1669 2393 2 chr5A.!!$R1 724
14 TraesCS7B01G444400 chr3A 62601635 62602234 599 True 473.0 534 95.3580 1675 2393 2 chr3A.!!$R1 718
15 TraesCS7B01G444400 chr2D 30162273 30162870 597 True 342.0 342 77.5580 29 617 1 chr2D.!!$R1 588
16 TraesCS7B01G444400 chr6D 358501980 358502570 590 False 285.0 285 75.9140 29 615 1 chr6D.!!$F1 586
17 TraesCS7B01G444400 chr3D 429297084 429297644 560 True 255.0 255 75.4820 9 564 1 chr3D.!!$R1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 851 0.042131 TCCACCGTGATCCCTAACCT 59.958 55.0 0.0 0.0 0.0 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2181 2276 0.108396 TGGCAAGAGCACAGCACTTA 59.892 50.0 1.55 0.0 44.61 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 36 3.842923 CGGCGCCTGTCATCCTCT 61.843 66.667 26.68 0.00 0.00 3.69
137 143 5.899631 AGTTTTCTAGGGTTTGTGTCCTA 57.100 39.130 0.00 0.00 34.75 2.94
141 147 3.087031 TCTAGGGTTTGTGTCCTACTCG 58.913 50.000 0.00 0.00 34.75 4.18
149 155 2.322658 TGTGTCCTACTCGGGAAAACT 58.677 47.619 0.00 0.00 37.10 2.66
155 161 3.012518 CCTACTCGGGAAAACTAGACGA 58.987 50.000 0.00 0.00 0.00 4.20
187 193 9.553064 GCTTTCTGAAGATGGAATAAGATTCTA 57.447 33.333 0.00 0.00 34.71 2.10
194 201 2.370849 TGGAATAAGATTCTACCCGCCC 59.629 50.000 0.00 0.00 0.00 6.13
195 202 2.290134 GGAATAAGATTCTACCCGCCCC 60.290 54.545 0.00 0.00 0.00 5.80
219 226 1.611673 CCCTGTTCTGGTGATGTGTCC 60.612 57.143 0.00 0.00 0.00 4.02
240 247 1.292223 CATCGTCGGAGGGTGTGTT 59.708 57.895 2.85 0.00 0.00 3.32
251 258 0.107410 GGGTGTGTTGAGGTGTGTCA 60.107 55.000 0.00 0.00 0.00 3.58
252 259 1.299541 GGTGTGTTGAGGTGTGTCAG 58.700 55.000 0.00 0.00 0.00 3.51
276 283 4.377022 CGACGGATCTCACAAAATTCGTTT 60.377 41.667 0.00 0.00 37.23 3.60
292 300 1.883275 CGTTTGATGGTGGCTTTGGTA 59.117 47.619 0.00 0.00 0.00 3.25
293 301 2.294791 CGTTTGATGGTGGCTTTGGTAA 59.705 45.455 0.00 0.00 0.00 2.85
321 349 1.202582 CGGATCTGGTCTTCGTCTGTT 59.797 52.381 0.00 0.00 0.00 3.16
328 356 3.374745 TGGTCTTCGTCTGTTTACGTTC 58.625 45.455 0.00 0.00 43.31 3.95
329 357 2.403037 GGTCTTCGTCTGTTTACGTTCG 59.597 50.000 0.00 0.00 43.31 3.95
369 411 0.532573 TCTCTTCATCGGTGGCAGTC 59.467 55.000 0.00 0.00 0.00 3.51
381 423 1.136305 GTGGCAGTCGCTATTCTGGTA 59.864 52.381 0.00 0.00 38.60 3.25
393 435 1.180029 TTCTGGTACGCTGGTCCTAC 58.820 55.000 0.00 0.00 0.00 3.18
399 441 2.825075 TACGCTGGTCCTACGAGGCA 62.825 60.000 10.54 0.00 34.61 4.75
406 448 1.138266 GGTCCTACGAGGCATTAGCAA 59.862 52.381 0.00 0.00 44.61 3.91
417 459 2.159517 GGCATTAGCAAGACAACTTCCG 60.160 50.000 0.00 0.00 44.61 4.30
421 463 0.600255 AGCAAGACAACTTCCGGACG 60.600 55.000 1.83 4.48 33.70 4.79
485 527 3.358707 GCCAACGGCGCACCTTTA 61.359 61.111 10.83 0.00 39.62 1.85
494 536 0.875059 GCGCACCTTTAGCTCACTTT 59.125 50.000 0.30 0.00 0.00 2.66
506 548 3.330267 AGCTCACTTTAGTGCTTGTAGC 58.670 45.455 10.75 10.75 45.25 3.58
509 551 1.732259 CACTTTAGTGCTTGTAGCCGG 59.268 52.381 0.00 0.00 41.51 6.13
511 553 0.675522 TTTAGTGCTTGTAGCCGGCC 60.676 55.000 26.15 9.73 41.51 6.13
529 571 2.339769 GCCCTAGGTGGTCTATGGATT 58.660 52.381 8.29 0.00 36.28 3.01
537 579 6.786843 AGGTGGTCTATGGATTTGGATATT 57.213 37.500 0.00 0.00 0.00 1.28
607 651 5.874810 TGGATACATCAGAAGTTTTTCTCGG 59.125 40.000 0.00 0.00 46.17 4.63
617 661 8.557029 TCAGAAGTTTTTCTCGGAAAAGAATAC 58.443 33.333 10.36 7.35 41.71 1.89
621 665 8.030744 AGTTTTTCTCGGAAAAGAATACTAGC 57.969 34.615 10.36 0.00 35.30 3.42
622 666 7.660208 AGTTTTTCTCGGAAAAGAATACTAGCA 59.340 33.333 10.36 0.00 35.30 3.49
623 667 7.972832 TTTTCTCGGAAAAGAATACTAGCAA 57.027 32.000 7.46 0.00 35.30 3.91
624 668 7.972832 TTTCTCGGAAAAGAATACTAGCAAA 57.027 32.000 0.00 0.00 35.30 3.68
625 669 7.972832 TTCTCGGAAAAGAATACTAGCAAAA 57.027 32.000 0.00 0.00 30.38 2.44
626 670 7.596749 TCTCGGAAAAGAATACTAGCAAAAG 57.403 36.000 0.00 0.00 0.00 2.27
627 671 6.092259 TCTCGGAAAAGAATACTAGCAAAAGC 59.908 38.462 0.00 0.00 0.00 3.51
628 672 5.022021 CGGAAAAGAATACTAGCAAAAGCG 58.978 41.667 0.00 0.00 0.00 4.68
629 673 5.163893 CGGAAAAGAATACTAGCAAAAGCGA 60.164 40.000 0.00 0.00 0.00 4.93
630 674 6.022208 GGAAAAGAATACTAGCAAAAGCGAC 58.978 40.000 0.00 0.00 0.00 5.19
631 675 5.547181 AAAGAATACTAGCAAAAGCGACC 57.453 39.130 0.00 0.00 0.00 4.79
632 676 4.202245 AGAATACTAGCAAAAGCGACCA 57.798 40.909 0.00 0.00 0.00 4.02
633 677 4.575885 AGAATACTAGCAAAAGCGACCAA 58.424 39.130 0.00 0.00 0.00 3.67
634 678 5.001232 AGAATACTAGCAAAAGCGACCAAA 58.999 37.500 0.00 0.00 0.00 3.28
635 679 5.648092 AGAATACTAGCAAAAGCGACCAAAT 59.352 36.000 0.00 0.00 0.00 2.32
636 680 6.821665 AGAATACTAGCAAAAGCGACCAAATA 59.178 34.615 0.00 0.00 0.00 1.40
637 681 6.995511 ATACTAGCAAAAGCGACCAAATAA 57.004 33.333 0.00 0.00 0.00 1.40
638 682 5.699097 ACTAGCAAAAGCGACCAAATAAA 57.301 34.783 0.00 0.00 0.00 1.40
639 683 5.458015 ACTAGCAAAAGCGACCAAATAAAC 58.542 37.500 0.00 0.00 0.00 2.01
640 684 4.584327 AGCAAAAGCGACCAAATAAACT 57.416 36.364 0.00 0.00 0.00 2.66
641 685 4.944048 AGCAAAAGCGACCAAATAAACTT 58.056 34.783 0.00 0.00 0.00 2.66
642 686 5.356426 AGCAAAAGCGACCAAATAAACTTT 58.644 33.333 0.00 0.00 0.00 2.66
643 687 5.815222 AGCAAAAGCGACCAAATAAACTTTT 59.185 32.000 0.00 0.00 37.71 2.27
644 688 6.019075 AGCAAAAGCGACCAAATAAACTTTTC 60.019 34.615 0.00 0.00 35.71 2.29
645 689 6.019075 GCAAAAGCGACCAAATAAACTTTTCT 60.019 34.615 0.00 0.00 35.71 2.52
646 690 7.465379 GCAAAAGCGACCAAATAAACTTTTCTT 60.465 33.333 0.00 0.00 35.71 2.52
647 691 8.387354 CAAAAGCGACCAAATAAACTTTTCTTT 58.613 29.630 0.00 0.00 35.71 2.52
648 692 8.487313 AAAGCGACCAAATAAACTTTTCTTTT 57.513 26.923 0.00 0.00 0.00 2.27
649 693 7.463469 AGCGACCAAATAAACTTTTCTTTTG 57.537 32.000 0.00 0.00 0.00 2.44
650 694 6.478673 AGCGACCAAATAAACTTTTCTTTTGG 59.521 34.615 18.60 18.60 42.84 3.28
651 695 6.645705 CGACCAAATAAACTTTTCTTTTGGC 58.354 36.000 19.43 14.36 41.95 4.52
652 696 6.561350 CGACCAAATAAACTTTTCTTTTGGCG 60.561 38.462 19.43 18.72 41.95 5.69
653 697 6.342111 ACCAAATAAACTTTTCTTTTGGCGA 58.658 32.000 19.43 0.00 41.95 5.54
654 698 6.819146 ACCAAATAAACTTTTCTTTTGGCGAA 59.181 30.769 19.43 0.00 41.95 4.70
655 699 7.497579 ACCAAATAAACTTTTCTTTTGGCGAAT 59.502 29.630 19.43 6.57 41.95 3.34
656 700 7.798052 CCAAATAAACTTTTCTTTTGGCGAATG 59.202 33.333 12.56 0.00 37.05 2.67
657 701 7.420184 AATAAACTTTTCTTTTGGCGAATGG 57.580 32.000 0.95 0.00 0.00 3.16
658 702 3.385193 ACTTTTCTTTTGGCGAATGGG 57.615 42.857 0.95 0.00 0.00 4.00
659 703 2.068519 CTTTTCTTTTGGCGAATGGGC 58.931 47.619 0.95 0.00 42.69 5.36
668 712 2.959507 GGCGAATGGGCAGTAATTTT 57.040 45.000 0.00 0.00 41.77 1.82
669 713 3.245518 GGCGAATGGGCAGTAATTTTT 57.754 42.857 0.00 0.00 41.77 1.94
688 732 2.358322 TTTTTGAGGGACAGGGTCAC 57.642 50.000 0.00 0.00 36.00 3.67
689 733 0.107831 TTTTGAGGGACAGGGTCACG 59.892 55.000 0.00 0.00 41.43 4.35
690 734 1.764571 TTTGAGGGACAGGGTCACGG 61.765 60.000 0.00 0.00 41.43 4.94
691 735 4.083862 GAGGGACAGGGTCACGGC 62.084 72.222 0.00 0.00 41.43 5.68
699 743 4.553668 GGGTCACGGCCCTTTATC 57.446 61.111 0.00 0.00 45.22 1.75
700 744 1.912971 GGGTCACGGCCCTTTATCT 59.087 57.895 0.00 0.00 45.22 1.98
701 745 0.179054 GGGTCACGGCCCTTTATCTC 60.179 60.000 0.00 0.00 45.22 2.75
702 746 0.831307 GGTCACGGCCCTTTATCTCT 59.169 55.000 0.00 0.00 0.00 3.10
703 747 2.037144 GGTCACGGCCCTTTATCTCTA 58.963 52.381 0.00 0.00 0.00 2.43
708 752 1.049402 GGCCCTTTATCTCTAGGCGT 58.951 55.000 0.00 0.00 44.82 5.68
737 781 1.079405 CACACGGCCCTACAACGAT 60.079 57.895 0.00 0.00 0.00 3.73
742 786 1.153229 GGCCCTACAACGATGTCCC 60.153 63.158 0.00 0.00 41.05 4.46
754 799 1.697432 CGATGTCCCAAGCCCCTTATA 59.303 52.381 0.00 0.00 0.00 0.98
777 822 3.199946 GGCCCATATATAGCCTGTTAGCA 59.800 47.826 15.58 0.00 43.62 3.49
793 838 2.409870 GCAGAAGCCCATTCCACCG 61.410 63.158 0.00 0.00 38.84 4.94
806 851 0.042131 TCCACCGTGATCCCTAACCT 59.958 55.000 0.00 0.00 0.00 3.50
808 853 1.687123 CCACCGTGATCCCTAACCTAG 59.313 57.143 0.00 0.00 0.00 3.02
809 854 2.385803 CACCGTGATCCCTAACCTAGT 58.614 52.381 0.00 0.00 0.00 2.57
851 896 0.963856 GATCCAACCGTCCAAACCCC 60.964 60.000 0.00 0.00 0.00 4.95
853 898 2.196229 CAACCGTCCAAACCCCCA 59.804 61.111 0.00 0.00 0.00 4.96
860 905 2.909965 CCAAACCCCCACACCACG 60.910 66.667 0.00 0.00 0.00 4.94
861 906 2.193517 CAAACCCCCACACCACGA 59.806 61.111 0.00 0.00 0.00 4.35
945 1001 3.902112 CACAGCCCACAACCCCCT 61.902 66.667 0.00 0.00 0.00 4.79
946 1002 3.580319 ACAGCCCACAACCCCCTC 61.580 66.667 0.00 0.00 0.00 4.30
947 1003 4.366684 CAGCCCACAACCCCCTCC 62.367 72.222 0.00 0.00 0.00 4.30
993 1063 2.103934 CGCAGCTCGAGGAAGGAG 59.896 66.667 15.58 0.00 41.67 3.69
1417 1487 1.687493 AAGCTCCGCTTCTAGGCCT 60.687 57.895 11.78 11.78 46.77 5.19
1418 1488 1.965754 AAGCTCCGCTTCTAGGCCTG 61.966 60.000 17.99 5.60 46.77 4.85
1420 1490 2.683572 TCCGCTTCTAGGCCTGCA 60.684 61.111 17.99 0.00 0.00 4.41
1457 1531 2.257034 CGTTTCTCTGCCGTTACTACC 58.743 52.381 0.00 0.00 0.00 3.18
1458 1532 2.094854 CGTTTCTCTGCCGTTACTACCT 60.095 50.000 0.00 0.00 0.00 3.08
1459 1533 3.251571 GTTTCTCTGCCGTTACTACCTG 58.748 50.000 0.00 0.00 0.00 4.00
1460 1534 2.502142 TCTCTGCCGTTACTACCTGA 57.498 50.000 0.00 0.00 0.00 3.86
1461 1535 2.799017 TCTCTGCCGTTACTACCTGAA 58.201 47.619 0.00 0.00 0.00 3.02
1462 1536 2.490903 TCTCTGCCGTTACTACCTGAAC 59.509 50.000 0.00 0.00 0.00 3.18
1465 1541 0.459063 GCCGTTACTACCTGAACCCG 60.459 60.000 0.00 0.00 0.00 5.28
1479 1555 5.158494 CCTGAACCCGTTTACATTTTTAGC 58.842 41.667 0.00 0.00 0.00 3.09
1486 1562 4.089923 CCGTTTACATTTTTAGCTGCTTGC 59.910 41.667 7.79 0.00 43.29 4.01
1497 1573 1.020437 GCTGCTTGCTCTTGGTATCC 58.980 55.000 0.00 0.00 38.95 2.59
1500 1576 1.291132 GCTTGCTCTTGGTATCCGTC 58.709 55.000 0.00 0.00 0.00 4.79
1512 1604 2.236893 GGTATCCGTCCCTGTTTTGGTA 59.763 50.000 0.00 0.00 0.00 3.25
1527 1619 4.799564 TTTGGTAATTGCCCATGAAGAC 57.200 40.909 10.34 0.00 0.00 3.01
1528 1620 3.737559 TGGTAATTGCCCATGAAGACT 57.262 42.857 10.34 0.00 0.00 3.24
1531 1624 3.629398 GGTAATTGCCCATGAAGACTCTG 59.371 47.826 0.16 0.00 0.00 3.35
1562 1657 5.752472 GCGTGGATCTTATGAGATATGATGG 59.248 44.000 0.00 0.00 42.66 3.51
1615 1710 9.710900 AATAGATCTTTGTTGGAATTTTGTTCC 57.289 29.630 0.00 0.00 39.03 3.62
1629 1724 3.976468 TTGTTCCGCGTTATTACTTCG 57.024 42.857 4.92 0.00 0.00 3.79
1649 1744 3.193479 TCGTGAGATATGCTGTCTGTTGT 59.807 43.478 0.00 0.00 33.31 3.32
1653 1748 4.221482 TGAGATATGCTGTCTGTTGTGTCT 59.779 41.667 0.00 0.00 0.00 3.41
1724 1819 2.223572 GGTGTTCTGGTTCTTGCTTGTG 60.224 50.000 0.00 0.00 0.00 3.33
1725 1820 1.405105 TGTTCTGGTTCTTGCTTGTGC 59.595 47.619 0.00 0.00 40.20 4.57
1740 1835 0.107508 TGTGCATTCTGCTAGGCCTC 60.108 55.000 9.68 0.00 45.31 4.70
1759 1854 4.563184 GCCTCGTTTGTTAGTGATCAGTAG 59.437 45.833 10.12 0.00 0.00 2.57
1792 1887 6.782082 TCTATGACTATCTTGCTTGTCTGT 57.218 37.500 0.00 0.00 0.00 3.41
1793 1888 7.175347 TCTATGACTATCTTGCTTGTCTGTT 57.825 36.000 0.00 0.00 0.00 3.16
1794 1889 7.615403 TCTATGACTATCTTGCTTGTCTGTTT 58.385 34.615 0.00 0.00 0.00 2.83
1830 1925 1.532868 GTAGCTTATTCATGCTGGCCG 59.467 52.381 0.00 0.00 40.08 6.13
1844 1939 0.036164 TGGCCGTTTCACTGCACTAT 59.964 50.000 0.00 0.00 29.40 2.12
1877 1972 7.587757 CACTGTTTTACATTCTAGTTTGTGCTC 59.412 37.037 9.60 0.00 0.00 4.26
1904 1999 2.025981 TGCTATTCATTGCCTGTGGAGT 60.026 45.455 0.00 0.00 0.00 3.85
1947 2042 8.794553 CCCTGTGTACTTGTACTTCCTATATAG 58.205 40.741 11.53 2.46 0.00 1.31
1978 2073 8.594687 GTTGGCTTACAAATTACAATGCTAATG 58.405 33.333 0.00 0.00 41.58 1.90
2022 2117 7.435192 GGTTATTGCTTTGATACAATGCTTACC 59.565 37.037 18.07 15.36 37.11 2.85
2102 2197 9.130661 TGAGGTCCAAATAAACACATTATATGG 57.869 33.333 0.00 0.00 32.96 2.74
2153 2248 6.995091 AGCTTGTGAACTCTCTTGTTTCTTAT 59.005 34.615 0.00 0.00 0.00 1.73
2171 2266 9.547753 GTTTCTTATATAGTGAATGAAGCAGGA 57.452 33.333 0.00 0.00 0.00 3.86
2181 2276 7.743749 AGTGAATGAAGCAGGATATCACTTAT 58.256 34.615 4.83 0.00 42.28 1.73
2246 2341 4.471904 TCACATCCTCGCAACTTTATCT 57.528 40.909 0.00 0.00 0.00 1.98
2310 2405 7.375834 TGTCACTGGTCTTAGTACAACATTAG 58.624 38.462 0.00 0.00 0.00 1.73
2407 2502 9.691362 ACATGTGTTGTTTTTATCAATCCTAAC 57.309 29.630 0.00 0.00 33.74 2.34
2408 2503 9.912634 CATGTGTTGTTTTTATCAATCCTAACT 57.087 29.630 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.167861 GCCGCCATCAACGAGAGAC 61.168 63.158 0.00 0.00 0.00 3.36
1 2 2.184322 GCCGCCATCAACGAGAGA 59.816 61.111 0.00 0.00 0.00 3.10
2 3 3.257561 CGCCGCCATCAACGAGAG 61.258 66.667 0.00 0.00 0.00 3.20
22 26 2.182827 CCACCAGAGAAGAGGATGACA 58.817 52.381 0.00 0.00 0.00 3.58
23 27 1.134551 GCCACCAGAGAAGAGGATGAC 60.135 57.143 0.00 0.00 0.00 3.06
26 30 0.985490 GGGCCACCAGAGAAGAGGAT 60.985 60.000 4.39 0.00 36.50 3.24
32 36 1.306997 CCCTAGGGCCACCAGAGAA 60.307 63.158 16.90 0.00 40.13 2.87
137 143 1.198637 CGTCGTCTAGTTTTCCCGAGT 59.801 52.381 0.00 0.00 0.00 4.18
141 147 2.537401 CCATCGTCGTCTAGTTTTCCC 58.463 52.381 0.00 0.00 0.00 3.97
149 155 2.089201 TCAGAAAGCCATCGTCGTCTA 58.911 47.619 0.00 0.00 0.00 2.59
155 161 2.237143 TCCATCTTCAGAAAGCCATCGT 59.763 45.455 0.00 0.00 32.18 3.73
195 202 0.679002 CATCACCAGAACAGGGGCTG 60.679 60.000 0.00 0.00 37.52 4.85
219 226 2.202797 CACCCTCCGACGATGCTG 60.203 66.667 0.00 0.00 0.00 4.41
240 247 2.335011 CGTCGCTGACACACCTCA 59.665 61.111 8.91 0.00 32.09 3.86
251 258 2.386661 ATTTTGTGAGATCCGTCGCT 57.613 45.000 0.00 0.00 0.00 4.93
252 259 2.534939 CGAATTTTGTGAGATCCGTCGC 60.535 50.000 0.00 0.00 0.00 5.19
276 283 4.046286 AGATTTACCAAAGCCACCATCA 57.954 40.909 0.00 0.00 0.00 3.07
284 292 5.463724 CAGATCCGAGTAGATTTACCAAAGC 59.536 44.000 0.00 0.00 0.00 3.51
292 300 4.036971 CGAAGACCAGATCCGAGTAGATTT 59.963 45.833 0.00 0.00 0.00 2.17
293 301 3.566322 CGAAGACCAGATCCGAGTAGATT 59.434 47.826 0.00 0.00 0.00 2.40
321 349 3.063670 TCGAAAGACACACGAACGTAA 57.936 42.857 0.00 0.00 33.20 3.18
328 356 3.561503 TGTGTAGATCGAAAGACACACG 58.438 45.455 19.77 0.00 46.97 4.49
329 357 5.403246 AGATGTGTAGATCGAAAGACACAC 58.597 41.667 23.70 17.10 43.25 3.82
369 411 0.102481 ACCAGCGTACCAGAATAGCG 59.898 55.000 0.00 0.00 0.00 4.26
381 423 3.450115 GCCTCGTAGGACCAGCGT 61.450 66.667 5.24 0.00 37.67 5.07
393 435 2.350522 AGTTGTCTTGCTAATGCCTCG 58.649 47.619 0.00 0.00 38.71 4.63
399 441 3.335579 GTCCGGAAGTTGTCTTGCTAAT 58.664 45.455 5.23 0.00 39.36 1.73
406 448 0.826672 AGACCGTCCGGAAGTTGTCT 60.827 55.000 18.66 18.66 38.96 3.41
417 459 3.930634 ACTTGTTGTAGTAGACCGTCC 57.069 47.619 0.00 0.00 0.00 4.79
421 463 5.526111 TGAGCAAAACTTGTTGTAGTAGACC 59.474 40.000 0.00 0.00 0.00 3.85
469 511 2.867472 CTAAAGGTGCGCCGTTGG 59.133 61.111 25.15 19.40 37.08 3.77
471 513 2.032071 AGCTAAAGGTGCGCCGTT 59.968 55.556 21.13 21.13 39.69 4.44
472 514 2.434359 GAGCTAAAGGTGCGCCGT 60.434 61.111 11.42 4.31 40.50 5.68
494 536 2.582436 GGCCGGCTACAAGCACTA 59.418 61.111 28.56 0.00 44.75 2.74
511 553 3.973973 TCCAAATCCATAGACCACCTAGG 59.026 47.826 7.41 7.41 45.67 3.02
585 629 7.596749 TTCCGAGAAAAACTTCTGATGTATC 57.403 36.000 0.00 0.00 0.00 2.24
589 633 6.959361 TCTTTTCCGAGAAAAACTTCTGATG 58.041 36.000 11.31 0.00 0.00 3.07
607 651 6.022208 GGTCGCTTTTGCTAGTATTCTTTTC 58.978 40.000 0.00 0.00 44.80 2.29
617 661 5.699839 AGTTTATTTGGTCGCTTTTGCTAG 58.300 37.500 0.00 0.00 44.80 3.42
620 664 5.651172 AAAGTTTATTTGGTCGCTTTTGC 57.349 34.783 0.00 0.00 43.23 3.68
621 665 7.463469 AGAAAAGTTTATTTGGTCGCTTTTG 57.537 32.000 0.00 0.00 36.62 2.44
622 666 8.487313 AAAGAAAAGTTTATTTGGTCGCTTTT 57.513 26.923 0.00 0.00 38.39 2.27
623 667 8.387354 CAAAAGAAAAGTTTATTTGGTCGCTTT 58.613 29.630 11.03 0.00 32.53 3.51
624 668 7.011016 CCAAAAGAAAAGTTTATTTGGTCGCTT 59.989 33.333 21.23 0.00 39.69 4.68
625 669 6.478673 CCAAAAGAAAAGTTTATTTGGTCGCT 59.521 34.615 21.23 0.00 39.69 4.93
626 670 6.645705 CCAAAAGAAAAGTTTATTTGGTCGC 58.354 36.000 21.23 0.00 39.69 5.19
627 671 6.561350 CGCCAAAAGAAAAGTTTATTTGGTCG 60.561 38.462 25.64 24.25 42.84 4.79
628 672 6.477360 TCGCCAAAAGAAAAGTTTATTTGGTC 59.523 34.615 25.64 20.28 42.84 4.02
629 673 6.342111 TCGCCAAAAGAAAAGTTTATTTGGT 58.658 32.000 25.64 0.14 42.84 3.67
630 674 6.836577 TCGCCAAAAGAAAAGTTTATTTGG 57.163 33.333 23.31 23.31 43.27 3.28
631 675 7.798052 CCATTCGCCAAAAGAAAAGTTTATTTG 59.202 33.333 11.58 11.58 32.53 2.32
632 676 7.041440 CCCATTCGCCAAAAGAAAAGTTTATTT 60.041 33.333 0.00 0.00 33.46 1.40
633 677 6.426633 CCCATTCGCCAAAAGAAAAGTTTATT 59.573 34.615 0.00 0.00 0.00 1.40
634 678 5.931724 CCCATTCGCCAAAAGAAAAGTTTAT 59.068 36.000 0.00 0.00 0.00 1.40
635 679 5.293560 CCCATTCGCCAAAAGAAAAGTTTA 58.706 37.500 0.00 0.00 0.00 2.01
636 680 4.126437 CCCATTCGCCAAAAGAAAAGTTT 58.874 39.130 0.00 0.00 0.00 2.66
637 681 3.727726 CCCATTCGCCAAAAGAAAAGTT 58.272 40.909 0.00 0.00 0.00 2.66
638 682 2.547855 GCCCATTCGCCAAAAGAAAAGT 60.548 45.455 0.00 0.00 0.00 2.66
639 683 2.068519 GCCCATTCGCCAAAAGAAAAG 58.931 47.619 0.00 0.00 0.00 2.27
640 684 1.414181 TGCCCATTCGCCAAAAGAAAA 59.586 42.857 0.00 0.00 0.00 2.29
641 685 1.000731 CTGCCCATTCGCCAAAAGAAA 59.999 47.619 0.00 0.00 0.00 2.52
642 686 0.602562 CTGCCCATTCGCCAAAAGAA 59.397 50.000 0.00 0.00 0.00 2.52
643 687 0.539438 ACTGCCCATTCGCCAAAAGA 60.539 50.000 0.00 0.00 0.00 2.52
644 688 1.173043 TACTGCCCATTCGCCAAAAG 58.827 50.000 0.00 0.00 0.00 2.27
645 689 1.621992 TTACTGCCCATTCGCCAAAA 58.378 45.000 0.00 0.00 0.00 2.44
646 690 1.846007 ATTACTGCCCATTCGCCAAA 58.154 45.000 0.00 0.00 0.00 3.28
647 691 1.846007 AATTACTGCCCATTCGCCAA 58.154 45.000 0.00 0.00 0.00 4.52
648 692 1.846007 AAATTACTGCCCATTCGCCA 58.154 45.000 0.00 0.00 0.00 5.69
649 693 2.959507 AAAATTACTGCCCATTCGCC 57.040 45.000 0.00 0.00 0.00 5.54
669 713 1.476110 CGTGACCCTGTCCCTCAAAAA 60.476 52.381 0.00 0.00 0.00 1.94
670 714 0.107831 CGTGACCCTGTCCCTCAAAA 59.892 55.000 0.00 0.00 0.00 2.44
671 715 1.752198 CGTGACCCTGTCCCTCAAA 59.248 57.895 0.00 0.00 0.00 2.69
672 716 2.214216 CCGTGACCCTGTCCCTCAA 61.214 63.158 0.00 0.00 0.00 3.02
673 717 2.603473 CCGTGACCCTGTCCCTCA 60.603 66.667 0.00 0.00 0.00 3.86
674 718 4.083862 GCCGTGACCCTGTCCCTC 62.084 72.222 0.00 0.00 0.00 4.30
683 727 0.831307 AGAGATAAAGGGCCGTGACC 59.169 55.000 0.00 0.00 0.00 4.02
684 728 2.036089 CCTAGAGATAAAGGGCCGTGAC 59.964 54.545 0.00 0.00 0.00 3.67
685 729 2.317040 CCTAGAGATAAAGGGCCGTGA 58.683 52.381 0.00 0.00 0.00 4.35
686 730 1.270358 GCCTAGAGATAAAGGGCCGTG 60.270 57.143 0.00 0.00 37.12 4.94
687 731 1.049402 GCCTAGAGATAAAGGGCCGT 58.951 55.000 0.00 0.00 37.12 5.68
688 732 0.038159 CGCCTAGAGATAAAGGGCCG 60.038 60.000 0.00 0.00 39.64 6.13
689 733 1.049402 ACGCCTAGAGATAAAGGGCC 58.951 55.000 0.00 0.00 39.64 5.80
690 734 2.352912 GCTACGCCTAGAGATAAAGGGC 60.353 54.545 0.00 0.00 39.43 5.19
691 735 2.891580 TGCTACGCCTAGAGATAAAGGG 59.108 50.000 0.00 0.00 0.00 3.95
692 736 4.299978 GTTGCTACGCCTAGAGATAAAGG 58.700 47.826 0.00 0.00 0.00 3.11
693 737 4.202121 TGGTTGCTACGCCTAGAGATAAAG 60.202 45.833 0.00 0.00 0.00 1.85
694 738 3.702548 TGGTTGCTACGCCTAGAGATAAA 59.297 43.478 0.00 0.00 0.00 1.40
695 739 3.293337 TGGTTGCTACGCCTAGAGATAA 58.707 45.455 0.00 0.00 0.00 1.75
696 740 2.885266 CTGGTTGCTACGCCTAGAGATA 59.115 50.000 0.00 0.00 0.00 1.98
697 741 1.683917 CTGGTTGCTACGCCTAGAGAT 59.316 52.381 0.00 0.00 0.00 2.75
698 742 1.103803 CTGGTTGCTACGCCTAGAGA 58.896 55.000 0.00 0.00 0.00 3.10
699 743 0.528684 GCTGGTTGCTACGCCTAGAG 60.529 60.000 0.00 0.00 38.95 2.43
700 744 1.515954 GCTGGTTGCTACGCCTAGA 59.484 57.895 0.00 0.00 38.95 2.43
701 745 1.521681 GGCTGGTTGCTACGCCTAG 60.522 63.158 9.33 0.00 42.39 3.02
702 746 2.287274 TGGCTGGTTGCTACGCCTA 61.287 57.895 15.63 3.20 42.90 3.93
703 747 3.636231 TGGCTGGTTGCTACGCCT 61.636 61.111 15.63 0.00 42.90 5.52
708 752 2.031919 CCGTGTGGCTGGTTGCTA 59.968 61.111 0.00 0.00 42.39 3.49
719 763 1.079405 ATCGTTGTAGGGCCGTGTG 60.079 57.895 8.57 0.00 0.00 3.82
720 764 1.079405 CATCGTTGTAGGGCCGTGT 60.079 57.895 8.57 0.00 0.00 4.49
728 772 1.369625 GGCTTGGGACATCGTTGTAG 58.630 55.000 0.00 0.00 39.30 2.74
731 775 2.046285 GGGGCTTGGGACATCGTTG 61.046 63.158 0.00 0.00 39.30 4.10
732 776 1.789576 AAGGGGCTTGGGACATCGTT 61.790 55.000 0.00 0.00 39.30 3.85
737 781 1.518367 CCTATAAGGGGCTTGGGACA 58.482 55.000 0.00 0.00 0.00 4.02
760 805 5.104735 GGGCTTCTGCTAACAGGCTATATAT 60.105 44.000 0.00 0.00 44.59 0.86
761 806 4.223032 GGGCTTCTGCTAACAGGCTATATA 59.777 45.833 0.00 0.00 44.59 0.86
773 818 0.255890 GGTGGAATGGGCTTCTGCTA 59.744 55.000 0.00 0.00 39.59 3.49
775 820 2.409870 CGGTGGAATGGGCTTCTGC 61.410 63.158 0.00 0.00 34.08 4.26
777 822 1.002134 CACGGTGGAATGGGCTTCT 60.002 57.895 0.00 0.00 34.08 2.85
793 838 1.416772 GGGCACTAGGTTAGGGATCAC 59.583 57.143 0.00 0.00 0.00 3.06
806 851 4.966274 ACGGTGGTGGGGGCACTA 62.966 66.667 0.00 0.00 0.00 2.74
851 896 2.248835 GGTTTCCGTCGTGGTGTGG 61.249 63.158 0.00 0.00 39.52 4.17
853 898 1.114722 TAGGGTTTCCGTCGTGGTGT 61.115 55.000 0.00 0.00 39.52 4.16
860 905 2.510918 GGCGCTAGGGTTTCCGTC 60.511 66.667 7.64 0.00 38.33 4.79
861 906 4.446413 CGGCGCTAGGGTTTCCGT 62.446 66.667 7.64 0.00 38.33 4.69
945 1001 3.513566 GGTGGTGGGTTTGGGGGA 61.514 66.667 0.00 0.00 0.00 4.81
946 1002 4.986708 CGGTGGTGGGTTTGGGGG 62.987 72.222 0.00 0.00 0.00 5.40
947 1003 4.986708 CCGGTGGTGGGTTTGGGG 62.987 72.222 0.00 0.00 0.00 4.96
983 1053 0.249238 CATCTTCGCCTCCTTCCTCG 60.249 60.000 0.00 0.00 0.00 4.63
993 1063 1.087501 GGAACTTCACCATCTTCGCC 58.912 55.000 0.00 0.00 0.00 5.54
1437 1511 2.094854 AGGTAGTAACGGCAGAGAAACG 60.095 50.000 0.00 0.00 0.00 3.60
1438 1512 3.057033 TCAGGTAGTAACGGCAGAGAAAC 60.057 47.826 0.00 0.00 0.00 2.78
1439 1513 3.159472 TCAGGTAGTAACGGCAGAGAAA 58.841 45.455 0.00 0.00 0.00 2.52
1440 1514 2.799017 TCAGGTAGTAACGGCAGAGAA 58.201 47.619 0.00 0.00 0.00 2.87
1457 1531 5.856455 CAGCTAAAAATGTAAACGGGTTCAG 59.144 40.000 0.00 0.00 0.00 3.02
1458 1532 5.764131 CAGCTAAAAATGTAAACGGGTTCA 58.236 37.500 0.00 0.00 0.00 3.18
1459 1533 4.619760 GCAGCTAAAAATGTAAACGGGTTC 59.380 41.667 0.00 0.00 0.00 3.62
1460 1534 4.279922 AGCAGCTAAAAATGTAAACGGGTT 59.720 37.500 0.00 0.00 0.00 4.11
1461 1535 3.824443 AGCAGCTAAAAATGTAAACGGGT 59.176 39.130 0.00 0.00 0.00 5.28
1462 1536 4.434713 AGCAGCTAAAAATGTAAACGGG 57.565 40.909 0.00 0.00 0.00 5.28
1479 1555 1.293924 CGGATACCAAGAGCAAGCAG 58.706 55.000 0.00 0.00 0.00 4.24
1486 1562 1.486211 ACAGGGACGGATACCAAGAG 58.514 55.000 0.00 0.00 0.00 2.85
1488 1564 2.747446 CAAAACAGGGACGGATACCAAG 59.253 50.000 0.00 0.00 0.00 3.61
1490 1566 1.003812 CCAAAACAGGGACGGATACCA 59.996 52.381 0.00 0.00 0.00 3.25
1494 1570 3.732048 ATTACCAAAACAGGGACGGAT 57.268 42.857 0.00 0.00 0.00 4.18
1495 1571 3.150767 CAATTACCAAAACAGGGACGGA 58.849 45.455 0.00 0.00 0.00 4.69
1497 1573 2.352323 GGCAATTACCAAAACAGGGACG 60.352 50.000 0.00 0.00 0.00 4.79
1500 1576 1.974236 TGGGCAATTACCAAAACAGGG 59.026 47.619 0.00 0.00 34.44 4.45
1512 1604 3.087031 CACAGAGTCTTCATGGGCAATT 58.913 45.455 0.00 0.00 0.00 2.32
1527 1619 3.238108 AGATCCACGCTAAACACAGAG 57.762 47.619 0.00 0.00 0.00 3.35
1528 1620 3.678056 AAGATCCACGCTAAACACAGA 57.322 42.857 0.00 0.00 0.00 3.41
1531 1624 5.348986 TCTCATAAGATCCACGCTAAACAC 58.651 41.667 0.00 0.00 0.00 3.32
1615 1710 5.441614 GCATATCTCACGAAGTAATAACGCG 60.442 44.000 3.53 3.53 41.61 6.01
1629 1724 4.248859 ACACAACAGACAGCATATCTCAC 58.751 43.478 0.00 0.00 0.00 3.51
1694 1789 0.546122 ACCAGAACACCACAAGAGCA 59.454 50.000 0.00 0.00 0.00 4.26
1700 1795 1.064758 AGCAAGAACCAGAACACCACA 60.065 47.619 0.00 0.00 0.00 4.17
1725 1820 1.667724 CAAACGAGGCCTAGCAGAATG 59.332 52.381 13.48 1.51 40.87 2.67
1731 1826 2.000447 CACTAACAAACGAGGCCTAGC 59.000 52.381 13.48 0.00 0.00 3.42
1740 1835 7.270793 GTCTACACTACTGATCACTAACAAACG 59.729 40.741 0.00 0.00 0.00 3.60
1759 1854 8.356657 AGCAAGATAGTCATAGAATGTCTACAC 58.643 37.037 0.00 0.00 34.61 2.90
1830 1925 3.751175 TGCCAGTTATAGTGCAGTGAAAC 59.249 43.478 3.69 8.37 0.00 2.78
1844 1939 7.221450 ACTAGAATGTAAAACAGTGCCAGTTA 58.779 34.615 0.00 0.00 0.00 2.24
1877 1972 4.454847 CACAGGCAATGAATAGCATCCTAG 59.545 45.833 0.00 0.00 35.78 3.02
1904 1999 7.549147 ACACAGGGAACTAAATACAAGACTA 57.451 36.000 0.00 0.00 40.21 2.59
1978 2073 3.550437 ACCAGAAGATACCACTGATGC 57.450 47.619 0.00 0.00 34.07 3.91
2022 2117 7.946655 ATATGTCGGTATGTGTACTTCAATG 57.053 36.000 0.00 0.00 0.00 2.82
2153 2248 8.427902 AGTGATATCCTGCTTCATTCACTATA 57.572 34.615 0.00 0.00 40.21 1.31
2181 2276 0.108396 TGGCAAGAGCACAGCACTTA 59.892 50.000 1.55 0.00 44.61 2.24
2187 2282 4.510038 AATAAAGTTGGCAAGAGCACAG 57.490 40.909 0.00 0.00 44.61 3.66
2310 2405 3.057315 CCCATCAAAGACAACACATGACC 60.057 47.826 0.00 0.00 0.00 4.02
2370 2465 2.296792 CAACACATGTTCACTGGGTGA 58.703 47.619 0.00 0.00 41.09 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.