AutoCloner

Multiple sequence alignment - TraesCS7B01G442900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G442900	chr7B	100.000	2213	0	0	1	2213	707830011	707832223	0.000000e+00	4087.0
1	TraesCS7B01G442900	chr7B	91.552	1018	48	18	905	1908	680070833	680071826	0.000000e+00	1369.0
2	TraesCS7B01G442900	chr7B	91.362	301	15	5	585	884	680070558	680070848	3.420000e-108	401.0
3	TraesCS7B01G442900	chr7B	78.300	447	45	21	1763	2190	680072700	680073113	7.900000e-60	241.0
4	TraesCS7B01G442900	chr7B	91.912	136	9	1	2057	2190	707878809	707878944	2.900000e-44	189.0
5	TraesCS7B01G442900	chr7B	83.951	81	9	4	1433	1512	707867693	707867770	8.470000e-10	75.0
6	TraesCS7B01G442900	chr7D	93.577	1012	50	11	905	1907	600860543	600861548	0.000000e+00	1495.0
7	TraesCS7B01G442900	chr7D	96.013	301	11	1	585	884	600860258	600860558	2.550000e-134	488.0
8	TraesCS7B01G442900	chr7D	81.111	450	42	17	1763	2190	600862709	600863137	9.860000e-84	320.0
9	TraesCS7B01G442900	chr7D	87.805	123	12	3	2082	2202	103195096	103194975	8.240000e-30	141.0
10	TraesCS7B01G442900	chr7A	92.688	1012	54	15	905	1907	692782008	692783008	0.000000e+00	1441.0
11	TraesCS7B01G442900	chr7A	93.186	587	37	3	1	585	505705581	505704996	0.000000e+00	859.0
12	TraesCS7B01G442900	chr7A	96.333	300	11	0	585	884	692781724	692782023	5.490000e-136	494.0
13	TraesCS7B01G442900	chr5D	93.526	587	35	3	1	585	384697101	384697686	0.000000e+00	870.0
14	TraesCS7B01G442900	chr4D	93.504	585	35	2	1	582	110033756	110033172	0.000000e+00	867.0
15	TraesCS7B01G442900	chr1D	93.654	583	31	5	1	582	462936203	462935626	0.000000e+00	867.0
16	TraesCS7B01G442900	chr2D	93.482	583	37	1	1	582	31034265	31033683	0.000000e+00	865.0
17	TraesCS7B01G442900	chr2D	93.310	583	38	1	1	582	566283953	566283371	0.000000e+00	859.0
18	TraesCS7B01G442900	chr5B	93.482	583	35	2	1	582	408964326	408964906	0.000000e+00	863.0
19	TraesCS7B01G442900	chr6A	93.322	584	37	2	3	584	27177600	27178183	0.000000e+00	861.0
20	TraesCS7B01G442900	chr6A	87.023	131	15	1	2046	2174	616095278	616095148	1.770000e-31	147.0
21	TraesCS7B01G442900	chr6A	74.312	327	52	15	1625	1945	616096892	616096592	2.320000e-20	110.0
22	TraesCS7B01G442900	chr2B	93.015	587	38	3	1	585	413459757	413460342	0.000000e+00	854.0
23	TraesCS7B01G442900	chr6D	77.546	432	53	20	1788	2190	459553453	459553037	1.030000e-53	220.0
24	TraesCS7B01G442900	chr3A	75.940	532	60	27	1690	2174	574317181	574317691	6.190000e-51	211.0
25	TraesCS7B01G442900	chr3A	76.404	356	49	17	1625	1969	574313854	574314185	2.270000e-35	159.0
26	TraesCS7B01G442900	chr3A	87.597	129	11	3	2082	2208	502781032	502781157	6.370000e-31	145.0
27	TraesCS7B01G442900	chr2A	86.992	123	12	2	2082	2202	649170832	649170952	3.830000e-28	135.0
28	TraesCS7B01G442900	chr1A	100.000	37	0	0	1285	1321	6496381	6496345	3.940000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G442900	chr7B	707830011	707832223	2212	False	4087.000000	4087	100.000000	1	2213	1	chr7B.!!$F1	2212
1	TraesCS7B01G442900	chr7B	680070558	680073113	2555	False	670.333333	1369	87.071333	585	2190	3	chr7B.!!$F4	1605
2	TraesCS7B01G442900	chr7D	600860258	600863137	2879	False	767.666667	1495	90.233667	585	2190	3	chr7D.!!$F1	1605
3	TraesCS7B01G442900	chr7A	692781724	692783008	1284	False	967.500000	1441	94.510500	585	1907	2	chr7A.!!$F1	1322
4	TraesCS7B01G442900	chr7A	505704996	505705581	585	True	859.000000	859	93.186000	1	585	1	chr7A.!!$R1	584
5	TraesCS7B01G442900	chr5D	384697101	384697686	585	False	870.000000	870	93.526000	1	585	1	chr5D.!!$F1	584
6	TraesCS7B01G442900	chr4D	110033172	110033756	584	True	867.000000	867	93.504000	1	582	1	chr4D.!!$R1	581
7	TraesCS7B01G442900	chr1D	462935626	462936203	577	True	867.000000	867	93.654000	1	582	1	chr1D.!!$R1	581
8	TraesCS7B01G442900	chr2D	31033683	31034265	582	True	865.000000	865	93.482000	1	582	1	chr2D.!!$R1	581
9	TraesCS7B01G442900	chr2D	566283371	566283953	582	True	859.000000	859	93.310000	1	582	1	chr2D.!!$R2	581
10	TraesCS7B01G442900	chr5B	408964326	408964906	580	False	863.000000	863	93.482000	1	582	1	chr5B.!!$F1	581
11	TraesCS7B01G442900	chr6A	27177600	27178183	583	False	861.000000	861	93.322000	3	584	1	chr6A.!!$F1	581
12	TraesCS7B01G442900	chr2B	413459757	413460342	585	False	854.000000	854	93.015000	1	585	1	chr2B.!!$F1	584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
572	576	0.600255	GATCAACGGTATGCCTCGGG	60.6	60.0	0.0	0.0	0.0	5.14	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1979	3363	0.809385	TGAGGAAGCCGTAGTCTTCG	59.191	55.0	0.0	0.0	44.25	3.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	73	3.817647	CTGTGGTCAAGAAAAGAAGGGAG	59.182	47.826	0.00	0.00	0.00	4.30
80	82	7.713942	GTCAAGAAAAGAAGGGAGTACAAGTTA	59.286	37.037	0.00	0.00	0.00	2.24
239	243	7.439955	AGAGTTGTGTCGAATATTGTGTACAAA	59.560	33.333	0.00	0.00	39.55	2.83
259	263	7.592885	ACAAAGTAGGTTACAGTTAGACTCA	57.407	36.000	0.00	0.00	0.00	3.41
260	264	7.432059	ACAAAGTAGGTTACAGTTAGACTCAC	58.568	38.462	0.00	0.00	0.00	3.51
275	279	8.298140	AGTTAGACTCACAGTAGTATTGTGTTC	58.702	37.037	21.17	18.16	44.77	3.18
349	353	2.994957	ATATAGCGGGGGTAGACACT	57.005	50.000	0.00	0.00	0.00	3.55
527	531	2.234300	AACAAATCTCGGTGTCGTGT	57.766	45.000	0.00	0.00	37.69	4.49
572	576	0.600255	GATCAACGGTATGCCTCGGG	60.600	60.000	0.00	0.00	0.00	5.14
582	586	4.313282	GGTATGCCTCGGGTTTATTCTAC	58.687	47.826	0.00	0.00	0.00	2.59
583	587	4.202284	GGTATGCCTCGGGTTTATTCTACA	60.202	45.833	0.00	0.00	0.00	2.74
591	595	8.410912	GCCTCGGGTTTATTCTACAATATTTTT	58.589	33.333	0.00	0.00	0.00	1.94
612	616	7.639113	TTTTCAGCCTATATTCGGTTGATTT	57.361	32.000	9.87	0.00	40.68	2.17
729	734	3.334583	TCATTCAGTCTTTCTTCCCCG	57.665	47.619	0.00	0.00	0.00	5.73
776	781	8.417780	AGAGTCATGAACGAGATTAAAATGAG	57.582	34.615	0.00	0.00	0.00	2.90
780	785	6.595326	TCATGAACGAGATTAAAATGAGCTGT	59.405	34.615	0.00	0.00	0.00	4.40
872	877	3.058450	CTGAGACAGAACAAGCTGACAG	58.942	50.000	0.00	0.00	39.20	3.51
873	878	2.695147	TGAGACAGAACAAGCTGACAGA	59.305	45.455	6.65	0.00	39.20	3.41
874	879	3.243670	TGAGACAGAACAAGCTGACAGAG	60.244	47.826	6.65	0.00	39.20	3.35
875	880	2.036992	AGACAGAACAAGCTGACAGAGG	59.963	50.000	6.65	0.00	39.20	3.69
876	881	2.036475	GACAGAACAAGCTGACAGAGGA	59.964	50.000	6.65	0.00	39.20	3.71
877	882	2.636893	ACAGAACAAGCTGACAGAGGAT	59.363	45.455	6.65	0.00	39.20	3.24
878	883	3.001414	CAGAACAAGCTGACAGAGGATG	58.999	50.000	6.65	1.38	38.14	3.51
879	884	2.902486	AGAACAAGCTGACAGAGGATGA	59.098	45.455	6.65	0.00	0.00	2.92
880	885	3.518705	AGAACAAGCTGACAGAGGATGAT	59.481	43.478	6.65	0.00	0.00	2.45
881	886	3.263489	ACAAGCTGACAGAGGATGATG	57.737	47.619	6.65	0.00	0.00	3.07
882	887	2.570752	ACAAGCTGACAGAGGATGATGT	59.429	45.455	6.65	0.00	0.00	3.06
883	888	3.196463	CAAGCTGACAGAGGATGATGTC	58.804	50.000	6.65	0.00	44.88	3.06
884	889	2.749600	AGCTGACAGAGGATGATGTCT	58.250	47.619	6.65	0.00	44.90	3.41
885	890	3.106054	AGCTGACAGAGGATGATGTCTT	58.894	45.455	6.65	0.00	44.90	3.01
886	891	3.518705	AGCTGACAGAGGATGATGTCTTT	59.481	43.478	6.65	0.00	44.90	2.52
887	892	4.019501	AGCTGACAGAGGATGATGTCTTTT	60.020	41.667	6.65	0.00	44.90	2.27
888	893	4.699257	GCTGACAGAGGATGATGTCTTTTT	59.301	41.667	6.65	0.00	44.90	1.94
946	951	5.363101	GAGATACTTCAGGCATGTCATTCA	58.637	41.667	0.00	0.00	0.00	2.57
1020	1025	1.133869	GGTCATTCGCCGGTTTTCG	59.866	57.895	1.90	0.00	38.88	3.46
1169	1174	1.681486	GGGCCGGAAGAGAAGGAGAG	61.681	65.000	5.05	0.00	0.00	3.20
1203	1208	1.064758	ACCAAGGAAATCATAGCCGCA	60.065	47.619	0.00	0.00	0.00	5.69
1280	1289	6.334989	GGATTGAAATGTGCATCTCATTTGA	58.665	36.000	16.02	7.26	42.90	2.69
1281	1290	6.984474	GGATTGAAATGTGCATCTCATTTGAT	59.016	34.615	16.02	10.67	42.90	2.57
1312	1322	1.486211	ACTAGCCAGCAGTTATCCGT	58.514	50.000	0.00	0.00	0.00	4.69
1344	1355	7.254692	CCGTCTTCTTCTGAGAATACATACGTA	60.255	40.741	0.00	0.00	40.93	3.57
1349	1360	8.563123	TCTTCTGAGAATACATACGTATAGGG	57.437	38.462	7.96	0.00	37.34	3.53
1436	1447	7.148340	GCTTCAGACAATTACTTACTTGCATCT	60.148	37.037	0.00	0.00	0.00	2.90
1835	1859	4.465446	CTCCTCCTCCCCCGCAGA	62.465	72.222	0.00	0.00	0.00	4.26
1842	1866	3.249189	TCCCCCGCAGAGCTTTGT	61.249	61.111	6.08	0.00	0.00	2.83
1908	1932	2.438614	TCCAGCTCCGTCCTCTCG	60.439	66.667	0.00	0.00	0.00	4.04
1909	1933	4.200283	CCAGCTCCGTCCTCTCGC	62.200	72.222	0.00	0.00	0.00	5.03
1910	1934	3.443925	CAGCTCCGTCCTCTCGCA	61.444	66.667	0.00	0.00	0.00	5.10
1911	1935	2.441164	AGCTCCGTCCTCTCGCAT	60.441	61.111	0.00	0.00	0.00	4.73
1912	1936	2.055042	AGCTCCGTCCTCTCGCATT	61.055	57.895	0.00	0.00	0.00	3.56
1917	1941	1.298713	CGTCCTCTCGCATTCTCGG	60.299	63.158	0.00	0.00	0.00	4.63
1918	1942	1.810532	GTCCTCTCGCATTCTCGGT	59.189	57.895	0.00	0.00	0.00	4.69
1919	1943	0.173708	GTCCTCTCGCATTCTCGGTT	59.826	55.000	0.00	0.00	0.00	4.44
1920	1944	0.173481	TCCTCTCGCATTCTCGGTTG	59.827	55.000	0.00	0.00	0.00	3.77
1922	1946	0.173481	CTCTCGCATTCTCGGTTGGA	59.827	55.000	0.00	0.00	0.00	3.53
1923	1947	0.108804	TCTCGCATTCTCGGTTGGAC	60.109	55.000	0.00	0.00	0.00	4.02
1924	1948	1.413767	CTCGCATTCTCGGTTGGACG	61.414	60.000	0.00	0.00	0.00	4.79
1926	1950	1.375523	GCATTCTCGGTTGGACGGT	60.376	57.895	0.00	0.00	0.00	4.83
1964	3348	2.524887	ACCGTTGACCCCGAGGAA	60.525	61.111	0.00	0.00	36.73	3.36
1965	3349	2.264794	CCGTTGACCCCGAGGAAG	59.735	66.667	0.00	0.00	36.73	3.46
1966	3350	2.280552	CCGTTGACCCCGAGGAAGA	61.281	63.158	0.00	0.00	36.73	2.87
1967	3351	1.080025	CGTTGACCCCGAGGAAGAC	60.080	63.158	0.00	0.00	36.73	3.01
1968	3352	1.080025	GTTGACCCCGAGGAAGACG	60.080	63.158	0.00	0.00	36.73	4.18
1969	3353	2.939261	TTGACCCCGAGGAAGACGC	61.939	63.158	0.00	0.00	36.73	5.19
2006	3390	2.427245	CGGCTTCCTCACCCTCGAT	61.427	63.158	0.00	0.00	0.00	3.59
2012	3396	0.335019	TCCTCACCCTCGATCTGGAA	59.665	55.000	3.07	0.00	0.00	3.53
2024	3408	2.277858	TCTGGAAGACTTCGAGGGC	58.722	57.895	22.47	0.00	38.67	5.19
2025	3409	1.219393	CTGGAAGACTTCGAGGGCC	59.781	63.158	17.05	0.00	34.07	5.80
2027	3411	0.836400	TGGAAGACTTCGAGGGCCTT	60.836	55.000	7.89	0.00	0.00	4.35
2030	3414	1.768684	AAGACTTCGAGGGCCTTGCA	61.769	55.000	16.55	4.14	0.00	4.08
2039	3423	4.785453	GGCCTTGCAGACGGGGAG	62.785	72.222	0.00	0.00	0.00	4.30
2102	3506	0.735978	CAGCACGTCGAGTATGCCAA	60.736	55.000	10.91	0.00	40.33	4.52
2145	3549	3.827898	GACCTCTCGTCCCCGCAG	61.828	72.222	0.00	0.00	35.23	5.18
2195	3601	2.044551	CCCCCTCCAAGCTCAAGC	60.045	66.667	0.00	0.00	42.49	4.01
2196	3602	2.759114	CCCCTCCAAGCTCAAGCA	59.241	61.111	4.59	0.00	45.16	3.91
2197	3603	1.378250	CCCCTCCAAGCTCAAGCAG	60.378	63.158	4.59	0.00	45.16	4.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	73	4.595762	TGACTCCACCTGTAACTTGTAC	57.404	45.455	0.00	0.00	0.00	2.90
80	82	3.034635	GACTCCATATGACTCCACCTGT	58.965	50.000	3.65	0.00	0.00	4.00
160	162	1.135689	ACCTTGAATTCGTCAATGCGC	60.136	47.619	0.00	0.00	45.27	6.09
183	185	1.867233	CACCTTGGCGAATATTCTCCG	59.133	52.381	17.51	7.85	34.83	4.63
239	243	6.305411	ACTGTGAGTCTAACTGTAACCTACT	58.695	40.000	0.00	0.00	0.00	2.57
259	263	7.476540	TCCTATGTGAACACAATACTACTGT	57.523	36.000	11.60	0.00	45.41	3.55
275	279	4.321304	GGACACGACTCCATATCCTATGTG	60.321	50.000	0.00	0.00	0.00	3.21
349	353	3.897141	TGTTGGCATAGGTTACATCGA	57.103	42.857	0.00	0.00	0.00	3.59
407	411	2.264794	GTCGCCCTGGACATCGTT	59.735	61.111	0.00	0.00	36.91	3.85
408	412	3.771160	GGTCGCCCTGGACATCGT	61.771	66.667	0.00	0.00	38.70	3.73
465	469	2.070650	ATTCCCGGGGCCTGACTAC	61.071	63.158	23.50	0.00	0.00	2.73
527	531	2.622942	GAGGACCAAGCAATCACACAAA	59.377	45.455	0.00	0.00	0.00	2.83
582	586	9.398170	CAACCGAATATAGGCTGAAAAATATTG	57.602	33.333	0.00	0.00	0.00	1.90
583	587	9.349713	TCAACCGAATATAGGCTGAAAAATATT	57.650	29.630	0.00	0.00	31.62	1.28
591	595	6.601613	ACAAAAATCAACCGAATATAGGCTGA	59.398	34.615	0.00	5.92	38.12	4.26
612	616	2.435372	AGCTTGGTGGAGTGAACAAA	57.565	45.000	0.00	0.00	0.00	2.83
755	760	6.595326	ACAGCTCATTTTAATCTCGTTCATGA	59.405	34.615	0.00	0.00	0.00	3.07
762	767	4.393062	ACACCACAGCTCATTTTAATCTCG	59.607	41.667	0.00	0.00	0.00	4.04
776	781	2.035066	AGCAAAAGATGAACACCACAGC	59.965	45.455	0.00	0.00	0.00	4.40
780	785	2.158475	AGGGAGCAAAAGATGAACACCA	60.158	45.455	0.00	0.00	0.00	4.17
892	897	3.943671	TCCTCTGTCTTCCCACAAAAA	57.056	42.857	0.00	0.00	0.00	1.94
893	898	3.394274	TCATCCTCTGTCTTCCCACAAAA	59.606	43.478	0.00	0.00	0.00	2.44
894	899	2.978978	TCATCCTCTGTCTTCCCACAAA	59.021	45.455	0.00	0.00	0.00	2.83
895	900	2.619931	TCATCCTCTGTCTTCCCACAA	58.380	47.619	0.00	0.00	0.00	3.33
896	901	2.325661	TCATCCTCTGTCTTCCCACA	57.674	50.000	0.00	0.00	0.00	4.17
897	902	2.503356	ACATCATCCTCTGTCTTCCCAC	59.497	50.000	0.00	0.00	0.00	4.61
898	903	2.768527	GACATCATCCTCTGTCTTCCCA	59.231	50.000	0.00	0.00	38.94	4.37
899	904	2.768527	TGACATCATCCTCTGTCTTCCC	59.231	50.000	4.53	0.00	41.83	3.97
900	905	4.440880	CTTGACATCATCCTCTGTCTTCC	58.559	47.826	4.53	0.00	41.83	3.46
901	906	4.161189	TCCTTGACATCATCCTCTGTCTTC	59.839	45.833	4.53	0.00	41.83	2.87
902	907	4.099633	TCCTTGACATCATCCTCTGTCTT	58.900	43.478	4.53	0.00	41.83	3.01
903	908	3.705579	CTCCTTGACATCATCCTCTGTCT	59.294	47.826	4.53	0.00	41.83	3.41
904	909	3.703556	TCTCCTTGACATCATCCTCTGTC	59.296	47.826	0.00	0.00	41.69	3.51
905	910	3.717576	TCTCCTTGACATCATCCTCTGT	58.282	45.455	0.00	0.00	0.00	3.41
906	911	4.959560	ATCTCCTTGACATCATCCTCTG	57.040	45.455	0.00	0.00	0.00	3.35
907	912	5.714863	AGTATCTCCTTGACATCATCCTCT	58.285	41.667	0.00	0.00	0.00	3.69
908	913	6.041409	TGAAGTATCTCCTTGACATCATCCTC	59.959	42.308	0.00	0.00	0.00	3.71
1020	1025	2.024306	GCCTCCCTATTGTTCAAGGCC	61.024	57.143	0.00	0.00	42.75	5.19
1203	1208	3.562973	GGAAGATGATGCATCACGACAAT	59.437	43.478	30.92	14.67	42.72	2.71
1219	1224	1.837439	TGTGGAATGCTACGGGAAGAT	59.163	47.619	0.00	0.00	0.00	2.40
1280	1289	5.070001	TGCTGGCTAGTTTACAAACAAGAT	58.930	37.500	7.53	0.00	41.30	2.40
1281	1290	4.456535	TGCTGGCTAGTTTACAAACAAGA	58.543	39.130	7.53	0.00	41.30	3.02
1312	1322	4.866508	TCTCAGAAGAAGACGGCTTTTA	57.133	40.909	4.21	0.00	33.61	1.52
1344	1355	4.338118	CACAAGTTGAACAACACACCCTAT	59.662	41.667	17.85	0.00	43.47	2.57
1349	1360	3.427503	CCTCCACAAGTTGAACAACACAC	60.428	47.826	17.85	0.00	43.47	3.82
1436	1447	4.946772	TCACAAGACCATTCTGTCAAAACA	59.053	37.500	0.00	0.00	37.73	2.83
1636	1649	7.390718	ACTTAATCGAGGCATAGAAACTGTTTT	59.609	33.333	7.28	0.88	0.00	2.43
1800	1824	3.775654	GGGCGAGCAGTGGTAGCT	61.776	66.667	23.61	0.00	46.82	3.32
1835	1859	4.295119	ACCGTCGCCGACAAAGCT	62.295	61.111	18.40	0.00	35.63	3.74
1882	1906	3.791586	GGAGCTGGAGCAGGGGAC	61.792	72.222	0.00	0.00	45.16	4.46
1885	1909	4.154347	GACGGAGCTGGAGCAGGG	62.154	72.222	0.00	0.00	45.16	4.45
1908	1932	1.375523	ACCGTCCAACCGAGAATGC	60.376	57.895	0.00	0.00	0.00	3.56
1909	1933	1.019278	CCACCGTCCAACCGAGAATG	61.019	60.000	0.00	0.00	0.00	2.67
1910	1934	1.189524	TCCACCGTCCAACCGAGAAT	61.190	55.000	0.00	0.00	0.00	2.40
1911	1935	1.833492	TCCACCGTCCAACCGAGAA	60.833	57.895	0.00	0.00	0.00	2.87
1912	1936	2.203523	TCCACCGTCCAACCGAGA	60.204	61.111	0.00	0.00	0.00	4.04
1947	3331	2.524887	TTCCTCGGGGTCAACGGT	60.525	61.111	0.00	0.00	0.00	4.83
1952	3336	3.379445	GCGTCTTCCTCGGGGTCA	61.379	66.667	0.00	0.00	0.00	4.02
1979	3363	0.809385	TGAGGAAGCCGTAGTCTTCG	59.191	55.000	0.00	0.00	44.25	3.79
2006	3390	1.258445	GGCCCTCGAAGTCTTCCAGA	61.258	60.000	8.64	0.13	0.00	3.86
2012	3396	2.177594	CTGCAAGGCCCTCGAAGTCT	62.178	60.000	0.00	0.00	0.00	3.24
2024	3408	4.785453	GCCTCCCCGTCTGCAAGG	62.785	72.222	0.00	0.00	0.00	3.61
2047	3431	3.946907	GTACACCACCACGCACTC	58.053	61.111	0.00	0.00	0.00	3.51
2055	3442	3.993584	TCACGGCGGTACACCACC	61.994	66.667	13.24	0.00	44.75	4.61
2079	3483	3.052620	ATACTCGACGTGCTGCGCT	62.053	57.895	9.73	0.00	46.11	5.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.