Multiple sequence alignment - TraesCS7B01G441200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G441200 chr7B 100.000 4922 0 0 1 4922 706382873 706387794 0.000000e+00 9090.0
1 TraesCS7B01G441200 chr7B 96.089 358 14 0 1 358 448347559 448347916 7.100000e-163 584.0
2 TraesCS7B01G441200 chr7B 92.891 211 15 0 1559 1769 462813943 462813733 1.720000e-79 307.0
3 TraesCS7B01G441200 chr7B 91.608 143 12 0 1978 2120 16945189 16945047 1.080000e-46 198.0
4 TraesCS7B01G441200 chr7B 74.790 238 49 9 2061 2294 333400227 333399997 4.060000e-16 97.1
5 TraesCS7B01G441200 chr7D 92.208 2477 123 39 488 2939 614353358 614350927 0.000000e+00 3441.0
6 TraesCS7B01G441200 chr7D 90.407 1303 54 20 3149 4403 614350359 614349080 0.000000e+00 1648.0
7 TraesCS7B01G441200 chr7D 92.617 298 12 4 4624 4921 614314890 614314603 2.120000e-113 420.0
8 TraesCS7B01G441200 chr7D 94.737 152 8 0 4480 4631 614348516 614348365 2.290000e-58 237.0
9 TraesCS7B01G441200 chr7D 88.525 61 2 2 422 477 614353448 614353388 8.840000e-08 69.4
10 TraesCS7B01G441200 chr7D 93.182 44 3 0 3094 3137 614350570 614350527 1.140000e-06 65.8
11 TraesCS7B01G441200 chr7A 90.715 2574 125 55 422 2958 706400457 706397961 0.000000e+00 3325.0
12 TraesCS7B01G441200 chr7A 91.850 957 53 17 3165 4108 706397291 706396347 0.000000e+00 1312.0
13 TraesCS7B01G441200 chr7A 90.984 244 19 2 4678 4919 706393458 706393216 4.750000e-85 326.0
14 TraesCS7B01G441200 chr7A 91.124 169 9 3 4164 4332 706396334 706396172 1.780000e-54 224.0
15 TraesCS7B01G441200 chr7A 94.406 143 8 0 4489 4631 706393685 706393543 2.310000e-53 220.0
16 TraesCS7B01G441200 chr7A 91.111 90 5 2 3010 3096 706397638 706397549 8.650000e-23 119.0
17 TraesCS7B01G441200 chr7A 90.217 92 3 2 4324 4415 706394492 706394407 1.120000e-21 115.0
18 TraesCS7B01G441200 chr7A 93.182 44 3 0 3094 3137 706397537 706397494 1.140000e-06 65.8
19 TraesCS7B01G441200 chr3B 86.581 775 78 10 1126 1887 29245245 29246006 0.000000e+00 832.0
20 TraesCS7B01G441200 chr3B 96.089 358 14 0 1 358 810450183 810449826 7.100000e-163 584.0
21 TraesCS7B01G441200 chr5B 94.656 393 11 2 1 383 530709657 530709265 7.050000e-168 601.0
22 TraesCS7B01G441200 chr5B 96.089 358 14 0 1 358 677651095 677650738 7.100000e-163 584.0
23 TraesCS7B01G441200 chr5B 83.673 588 76 12 2392 2973 165772791 165772218 2.020000e-148 536.0
24 TraesCS7B01G441200 chr5B 83.673 588 77 11 2392 2973 166164128 166163554 2.020000e-148 536.0
25 TraesCS7B01G441200 chr5B 89.198 324 34 1 1434 1756 698003071 698003394 2.130000e-108 403.0
26 TraesCS7B01G441200 chr5B 82.803 314 42 8 2596 2903 291379403 291379710 2.260000e-68 270.0
27 TraesCS7B01G441200 chr5B 83.000 100 10 1 2840 2939 678673728 678673636 3.160000e-12 84.2
28 TraesCS7B01G441200 chr1B 96.927 358 11 0 1 358 655851300 655850943 7.050000e-168 601.0
29 TraesCS7B01G441200 chr1B 96.369 358 13 0 1 358 504116100 504116457 1.530000e-164 590.0
30 TraesCS7B01G441200 chr1B 92.035 113 5 2 2008 2117 553639318 553639429 6.600000e-34 156.0
31 TraesCS7B01G441200 chr4B 96.369 358 13 0 1 358 621673837 621674194 1.530000e-164 590.0
32 TraesCS7B01G441200 chr4B 93.909 394 14 2 1 384 592204631 592204238 1.970000e-163 586.0
33 TraesCS7B01G441200 chr4B 89.899 198 20 0 1560 1757 665226606 665226803 6.320000e-64 255.0
34 TraesCS7B01G441200 chr2B 96.359 357 13 0 2 358 799649526 799649170 5.490000e-164 588.0
35 TraesCS7B01G441200 chr6A 86.560 439 30 12 2468 2878 34545807 34546244 1.610000e-124 457.0
36 TraesCS7B01G441200 chr3D 91.291 333 24 5 1440 1769 31419047 31418717 2.700000e-122 449.0
37 TraesCS7B01G441200 chr5A 91.139 316 28 0 1439 1754 325181172 325181487 3.520000e-116 429.0
38 TraesCS7B01G441200 chr5A 83.121 314 41 8 2596 2903 341874195 341874502 4.850000e-70 276.0
39 TraesCS7B01G441200 chr5A 82.171 129 11 7 2840 2964 504719774 504719654 3.130000e-17 100.0
40 TraesCS7B01G441200 chr5D 82.803 314 42 8 2596 2903 257124247 257124554 2.260000e-68 270.0
41 TraesCS7B01G441200 chr4A 87.204 211 27 0 1559 1769 608584023 608583813 1.770000e-59 241.0
42 TraesCS7B01G441200 chr2D 94.737 76 4 0 1126 1201 389695378 389695453 8.650000e-23 119.0
43 TraesCS7B01G441200 chr2A 82.308 130 11 5 2840 2965 97847609 97847488 8.720000e-18 102.0
44 TraesCS7B01G441200 chr4D 97.368 38 1 0 1126 1163 374779954 374779917 1.140000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G441200 chr7B 706382873 706387794 4921 False 9090.00 9090 100.000000 1 4922 1 chr7B.!!$F2 4921
1 TraesCS7B01G441200 chr7D 614348365 614353448 5083 True 1092.24 3441 91.811800 422 4631 5 chr7D.!!$R2 4209
2 TraesCS7B01G441200 chr7A 706393216 706400457 7241 True 713.35 3325 91.698625 422 4919 8 chr7A.!!$R1 4497
3 TraesCS7B01G441200 chr3B 29245245 29246006 761 False 832.00 832 86.581000 1126 1887 1 chr3B.!!$F1 761
4 TraesCS7B01G441200 chr5B 165772218 165772791 573 True 536.00 536 83.673000 2392 2973 1 chr5B.!!$R1 581
5 TraesCS7B01G441200 chr5B 166163554 166164128 574 True 536.00 536 83.673000 2392 2973 1 chr5B.!!$R2 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.0 0.00 0.0 40.32 3.95 F
306 307 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.0 0.00 0.0 0.00 4.18 F
307 308 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.0 0.00 0.0 0.00 3.36 F
311 312 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.0 6.47 0.0 0.00 3.86 F
1814 1908 0.605589 AACAACTACTTCAGGGGCGC 60.606 55.0 0.00 0.0 0.00 6.53 F
2941 3042 0.395311 CTGCTCCACTCCATTGCCAT 60.395 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1076 1152 0.741574 CAGCAGCAGCAGAGAGAAGG 60.742 60.000 3.17 0.00 45.49 3.46 R
1722 1816 1.546834 CGAGGTAGTTGTTCGCTAGC 58.453 55.000 4.06 4.06 37.25 3.42 R
1728 1822 2.098831 GCCGGCGAGGTAGTTGTTC 61.099 63.158 12.58 0.00 43.70 3.18 R
2049 2143 3.060020 GAGCGACGACGGGATGGAA 62.060 63.158 9.67 0.00 40.15 3.53 R
3051 3427 0.541863 ATCATGACCCTTGTCCCGAC 59.458 55.000 0.00 0.00 41.01 4.79 R
4092 4727 0.029834 AGAGCTTGCAACAAACAGCG 59.970 50.000 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.065575 GTCTAGCATCGTTGGTGGG 57.934 57.895 8.40 2.07 34.79 4.61
19 20 1.090052 GTCTAGCATCGTTGGTGGGC 61.090 60.000 8.40 3.19 34.79 5.36
20 21 2.125310 TAGCATCGTTGGTGGGCG 60.125 61.111 8.40 0.00 34.79 6.13
21 22 2.852495 CTAGCATCGTTGGTGGGCGT 62.852 60.000 8.40 0.00 34.79 5.68
22 23 4.101790 GCATCGTTGGTGGGCGTG 62.102 66.667 0.00 0.00 0.00 5.34
23 24 2.668212 CATCGTTGGTGGGCGTGT 60.668 61.111 0.00 0.00 0.00 4.49
24 25 2.668212 ATCGTTGGTGGGCGTGTG 60.668 61.111 0.00 0.00 0.00 3.82
25 26 4.920112 TCGTTGGTGGGCGTGTGG 62.920 66.667 0.00 0.00 0.00 4.17
26 27 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
27 28 2.978010 GTTGGTGGGCGTGTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
28 29 4.263572 TTGGTGGGCGTGTGGAGG 62.264 66.667 0.00 0.00 0.00 4.30
31 32 4.250305 GTGGGCGTGTGGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
32 33 4.248842 TGGGCGTGTGGAGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
33 34 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
34 35 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
35 36 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
36 37 1.664965 GCGTGTGGAGGTGTGTCTC 60.665 63.158 0.00 0.00 0.00 3.36
41 42 4.436998 GGAGGTGTGTCTCCGGCG 62.437 72.222 0.00 0.00 43.19 6.46
42 43 4.436998 GAGGTGTGTCTCCGGCGG 62.437 72.222 22.51 22.51 0.00 6.13
45 46 4.736896 GTGTGTCTCCGGCGGGTC 62.737 72.222 27.98 16.58 33.83 4.46
46 47 4.988716 TGTGTCTCCGGCGGGTCT 62.989 66.667 27.98 0.00 33.83 3.85
47 48 2.753043 GTGTCTCCGGCGGGTCTA 60.753 66.667 27.98 5.30 33.83 2.59
48 49 2.125961 GTGTCTCCGGCGGGTCTAT 61.126 63.158 27.98 0.00 33.83 1.98
49 50 1.826921 TGTCTCCGGCGGGTCTATC 60.827 63.158 27.98 11.26 33.83 2.08
50 51 1.528776 GTCTCCGGCGGGTCTATCT 60.529 63.158 27.98 0.00 33.83 1.98
51 52 1.108132 GTCTCCGGCGGGTCTATCTT 61.108 60.000 27.98 0.00 33.83 2.40
52 53 0.396695 TCTCCGGCGGGTCTATCTTT 60.397 55.000 27.98 0.00 33.83 2.52
53 54 0.249489 CTCCGGCGGGTCTATCTTTG 60.249 60.000 27.98 0.00 33.83 2.77
54 55 0.685131 TCCGGCGGGTCTATCTTTGA 60.685 55.000 27.98 0.00 33.83 2.69
55 56 0.393077 CCGGCGGGTCTATCTTTGAT 59.607 55.000 20.56 0.00 0.00 2.57
56 57 1.502231 CGGCGGGTCTATCTTTGATG 58.498 55.000 0.00 0.00 0.00 3.07
57 58 1.068588 CGGCGGGTCTATCTTTGATGA 59.931 52.381 0.00 0.00 0.00 2.92
58 59 2.483013 CGGCGGGTCTATCTTTGATGAA 60.483 50.000 0.00 0.00 0.00 2.57
59 60 3.541632 GGCGGGTCTATCTTTGATGAAA 58.458 45.455 0.00 0.00 0.00 2.69
60 61 4.137543 GGCGGGTCTATCTTTGATGAAAT 58.862 43.478 0.00 0.00 0.00 2.17
61 62 4.580580 GGCGGGTCTATCTTTGATGAAATT 59.419 41.667 0.00 0.00 0.00 1.82
62 63 5.506317 GGCGGGTCTATCTTTGATGAAATTG 60.506 44.000 0.00 0.00 0.00 2.32
63 64 5.514279 CGGGTCTATCTTTGATGAAATTGC 58.486 41.667 0.00 0.00 0.00 3.56
64 65 5.297776 CGGGTCTATCTTTGATGAAATTGCT 59.702 40.000 0.00 0.00 0.00 3.91
65 66 6.512415 CGGGTCTATCTTTGATGAAATTGCTC 60.512 42.308 0.00 0.00 0.00 4.26
66 67 6.425504 GGTCTATCTTTGATGAAATTGCTCG 58.574 40.000 0.00 0.00 0.00 5.03
67 68 6.425504 GTCTATCTTTGATGAAATTGCTCGG 58.574 40.000 0.00 0.00 0.00 4.63
68 69 6.258727 GTCTATCTTTGATGAAATTGCTCGGA 59.741 38.462 0.00 0.00 0.00 4.55
69 70 6.994496 TCTATCTTTGATGAAATTGCTCGGAT 59.006 34.615 0.00 0.00 0.00 4.18
70 71 5.490139 TCTTTGATGAAATTGCTCGGATC 57.510 39.130 0.00 0.00 0.00 3.36
71 72 5.188434 TCTTTGATGAAATTGCTCGGATCT 58.812 37.500 0.00 0.00 0.00 2.75
72 73 5.295292 TCTTTGATGAAATTGCTCGGATCTC 59.705 40.000 0.00 0.00 0.00 2.75
73 74 3.126073 TGATGAAATTGCTCGGATCTCG 58.874 45.455 0.00 0.00 40.90 4.04
74 75 2.672961 TGAAATTGCTCGGATCTCGT 57.327 45.000 0.00 0.00 40.32 4.18
75 76 2.540515 TGAAATTGCTCGGATCTCGTC 58.459 47.619 0.00 0.00 40.32 4.20
76 77 1.518929 GAAATTGCTCGGATCTCGTCG 59.481 52.381 0.00 0.00 40.32 5.12
77 78 0.456221 AATTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
78 79 0.456221 ATTGCTCGGATCTCGTCGTT 59.544 50.000 0.00 0.00 40.32 3.85
79 80 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
80 81 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
81 82 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
82 83 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
83 84 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
84 85 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
85 86 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
86 87 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
87 88 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
88 89 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
89 90 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
90 91 0.581529 TCGTCGTTGTTCGTCTACGT 59.418 50.000 2.02 0.00 43.41 3.57
91 92 1.003972 TCGTCGTTGTTCGTCTACGTT 60.004 47.619 0.00 0.00 43.41 3.99
92 93 1.376856 CGTCGTTGTTCGTCTACGTTC 59.623 52.381 0.00 0.00 43.41 3.95
93 94 1.376856 GTCGTTGTTCGTCTACGTTCG 59.623 52.381 0.00 0.00 43.41 3.95
94 95 1.003972 TCGTTGTTCGTCTACGTTCGT 60.004 47.619 0.00 2.91 43.41 3.85
95 96 1.119497 CGTTGTTCGTCTACGTTCGTG 59.881 52.381 8.14 0.00 39.58 4.35
96 97 2.111756 GTTGTTCGTCTACGTTCGTGT 58.888 47.619 8.14 0.00 40.80 4.49
97 98 1.745566 TGTTCGTCTACGTTCGTGTG 58.254 50.000 8.14 1.60 40.80 3.82
98 99 1.063912 TGTTCGTCTACGTTCGTGTGT 59.936 47.619 8.14 0.00 40.80 3.72
99 100 1.705559 GTTCGTCTACGTTCGTGTGTC 59.294 52.381 8.14 0.00 40.80 3.67
100 101 1.220529 TCGTCTACGTTCGTGTGTCT 58.779 50.000 8.14 0.00 40.80 3.41
101 102 1.599071 TCGTCTACGTTCGTGTGTCTT 59.401 47.619 8.14 0.00 40.80 3.01
102 103 1.967908 CGTCTACGTTCGTGTGTCTTC 59.032 52.381 8.14 0.00 34.11 2.87
103 104 2.349249 CGTCTACGTTCGTGTGTCTTCT 60.349 50.000 8.14 0.00 34.11 2.85
104 105 2.971915 GTCTACGTTCGTGTGTCTTCTG 59.028 50.000 8.14 0.00 0.00 3.02
105 106 2.874086 TCTACGTTCGTGTGTCTTCTGA 59.126 45.455 8.14 0.00 0.00 3.27
106 107 2.795175 ACGTTCGTGTGTCTTCTGAT 57.205 45.000 0.00 0.00 0.00 2.90
107 108 3.093717 ACGTTCGTGTGTCTTCTGATT 57.906 42.857 0.00 0.00 0.00 2.57
108 109 2.794910 ACGTTCGTGTGTCTTCTGATTG 59.205 45.455 0.00 0.00 0.00 2.67
109 110 2.155732 CGTTCGTGTGTCTTCTGATTGG 59.844 50.000 0.00 0.00 0.00 3.16
110 111 3.390135 GTTCGTGTGTCTTCTGATTGGA 58.610 45.455 0.00 0.00 0.00 3.53
111 112 3.961480 TCGTGTGTCTTCTGATTGGAT 57.039 42.857 0.00 0.00 0.00 3.41
112 113 4.271696 TCGTGTGTCTTCTGATTGGATT 57.728 40.909 0.00 0.00 0.00 3.01
113 114 4.641396 TCGTGTGTCTTCTGATTGGATTT 58.359 39.130 0.00 0.00 0.00 2.17
114 115 5.063204 TCGTGTGTCTTCTGATTGGATTTT 58.937 37.500 0.00 0.00 0.00 1.82
115 116 5.530915 TCGTGTGTCTTCTGATTGGATTTTT 59.469 36.000 0.00 0.00 0.00 1.94
116 117 5.853282 CGTGTGTCTTCTGATTGGATTTTTC 59.147 40.000 0.00 0.00 0.00 2.29
117 118 6.293626 CGTGTGTCTTCTGATTGGATTTTTCT 60.294 38.462 0.00 0.00 0.00 2.52
118 119 6.860023 GTGTGTCTTCTGATTGGATTTTTCTG 59.140 38.462 0.00 0.00 0.00 3.02
119 120 6.772233 TGTGTCTTCTGATTGGATTTTTCTGA 59.228 34.615 0.00 0.00 0.00 3.27
120 121 7.449395 TGTGTCTTCTGATTGGATTTTTCTGAT 59.551 33.333 0.00 0.00 0.00 2.90
121 122 7.967303 GTGTCTTCTGATTGGATTTTTCTGATC 59.033 37.037 0.00 0.00 0.00 2.92
122 123 7.886970 TGTCTTCTGATTGGATTTTTCTGATCT 59.113 33.333 0.00 0.00 0.00 2.75
123 124 9.388506 GTCTTCTGATTGGATTTTTCTGATCTA 57.611 33.333 0.00 0.00 0.00 1.98
124 125 9.388506 TCTTCTGATTGGATTTTTCTGATCTAC 57.611 33.333 0.00 0.00 0.00 2.59
125 126 7.776933 TCTGATTGGATTTTTCTGATCTACG 57.223 36.000 0.00 0.00 0.00 3.51
126 127 7.331026 TCTGATTGGATTTTTCTGATCTACGT 58.669 34.615 0.00 0.00 0.00 3.57
127 128 7.824289 TCTGATTGGATTTTTCTGATCTACGTT 59.176 33.333 0.00 0.00 0.00 3.99
128 129 9.098355 CTGATTGGATTTTTCTGATCTACGTTA 57.902 33.333 0.00 0.00 0.00 3.18
129 130 9.613428 TGATTGGATTTTTCTGATCTACGTTAT 57.387 29.630 0.00 0.00 0.00 1.89
132 133 9.667107 TTGGATTTTTCTGATCTACGTTATTCT 57.333 29.630 0.00 0.00 0.00 2.40
133 134 9.667107 TGGATTTTTCTGATCTACGTTATTCTT 57.333 29.630 0.00 0.00 0.00 2.52
139 140 9.521503 TTTCTGATCTACGTTATTCTTCATCTG 57.478 33.333 0.00 0.00 0.00 2.90
140 141 7.142021 TCTGATCTACGTTATTCTTCATCTGC 58.858 38.462 0.00 0.00 0.00 4.26
141 142 5.915196 TGATCTACGTTATTCTTCATCTGCG 59.085 40.000 0.00 0.00 0.00 5.18
142 143 4.607955 TCTACGTTATTCTTCATCTGCGG 58.392 43.478 0.00 0.00 0.00 5.69
143 144 1.933853 ACGTTATTCTTCATCTGCGGC 59.066 47.619 0.00 0.00 0.00 6.53
144 145 1.071239 CGTTATTCTTCATCTGCGGCG 60.071 52.381 0.51 0.51 0.00 6.46
145 146 1.261619 GTTATTCTTCATCTGCGGCGG 59.738 52.381 9.78 1.35 0.00 6.13
146 147 0.464036 TATTCTTCATCTGCGGCGGT 59.536 50.000 9.78 0.00 0.00 5.68
147 148 0.392998 ATTCTTCATCTGCGGCGGTT 60.393 50.000 9.78 0.00 0.00 4.44
148 149 1.298157 TTCTTCATCTGCGGCGGTTG 61.298 55.000 9.78 12.61 0.00 3.77
149 150 3.386867 CTTCATCTGCGGCGGTTGC 62.387 63.158 9.78 0.00 41.71 4.17
150 151 3.899981 TTCATCTGCGGCGGTTGCT 62.900 57.895 9.78 0.00 42.25 3.91
157 158 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
158 159 2.594592 GGCGGTTGCTGTTCTGGT 60.595 61.111 0.00 0.00 42.25 4.00
159 160 2.639286 GCGGTTGCTGTTCTGGTG 59.361 61.111 0.00 0.00 38.39 4.17
160 161 2.639286 CGGTTGCTGTTCTGGTGC 59.361 61.111 0.00 0.00 0.00 5.01
161 162 2.639286 GGTTGCTGTTCTGGTGCG 59.361 61.111 0.00 0.00 0.00 5.34
162 163 2.050985 GTTGCTGTTCTGGTGCGC 60.051 61.111 0.00 0.00 0.00 6.09
163 164 2.203195 TTGCTGTTCTGGTGCGCT 60.203 55.556 9.73 0.00 0.00 5.92
164 165 2.545596 TTGCTGTTCTGGTGCGCTG 61.546 57.895 9.73 0.00 0.00 5.18
165 166 3.730761 GCTGTTCTGGTGCGCTGG 61.731 66.667 9.73 0.00 0.00 4.85
166 167 2.281070 CTGTTCTGGTGCGCTGGT 60.281 61.111 9.73 0.00 0.00 4.00
167 168 2.280797 TGTTCTGGTGCGCTGGTC 60.281 61.111 9.73 0.00 0.00 4.02
168 169 3.050275 GTTCTGGTGCGCTGGTCC 61.050 66.667 9.73 6.75 0.00 4.46
169 170 3.241530 TTCTGGTGCGCTGGTCCT 61.242 61.111 9.73 0.00 0.00 3.85
170 171 1.911269 TTCTGGTGCGCTGGTCCTA 60.911 57.895 9.73 0.00 0.00 2.94
171 172 2.125512 CTGGTGCGCTGGTCCTAC 60.126 66.667 9.73 0.00 0.00 3.18
172 173 3.989698 CTGGTGCGCTGGTCCTACG 62.990 68.421 9.73 0.30 0.00 3.51
173 174 4.814294 GGTGCGCTGGTCCTACGG 62.814 72.222 9.73 0.00 0.00 4.02
174 175 4.814294 GTGCGCTGGTCCTACGGG 62.814 72.222 9.73 0.00 0.00 5.28
182 183 2.820261 GTCCTACGGGGCCTTAGC 59.180 66.667 0.84 0.00 38.76 3.09
183 184 2.062177 GTCCTACGGGGCCTTAGCA 61.062 63.158 0.84 0.00 42.56 3.49
184 185 2.062177 TCCTACGGGGCCTTAGCAC 61.062 63.158 0.84 0.00 43.97 4.40
185 186 2.106332 CTACGGGGCCTTAGCACG 59.894 66.667 0.84 0.00 46.55 5.34
186 187 2.362760 TACGGGGCCTTAGCACGA 60.363 61.111 0.84 0.00 46.55 4.35
187 188 2.624437 CTACGGGGCCTTAGCACGAC 62.624 65.000 0.84 0.00 46.55 4.34
189 190 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
190 191 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
191 192 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
192 193 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
193 194 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
194 195 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
195 196 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
196 197 0.797249 CTTAGCACGACGACTTCCCG 60.797 60.000 0.00 0.00 0.00 5.14
197 198 1.236616 TTAGCACGACGACTTCCCGA 61.237 55.000 0.00 0.00 0.00 5.14
198 199 1.915614 TAGCACGACGACTTCCCGAC 61.916 60.000 0.00 0.00 0.00 4.79
199 200 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
200 201 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
201 202 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
202 203 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
203 204 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
204 205 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
205 206 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
206 207 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
207 208 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
208 209 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
209 210 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
210 211 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
211 212 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
212 213 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
213 214 3.079578 TCCCGACTGTCTACTACAACAG 58.920 50.000 6.21 1.17 46.61 3.16
214 215 2.163815 CCCGACTGTCTACTACAACAGG 59.836 54.545 6.21 0.00 45.71 4.00
215 216 2.818432 CCGACTGTCTACTACAACAGGT 59.182 50.000 6.21 0.00 45.71 4.00
216 217 3.255149 CCGACTGTCTACTACAACAGGTT 59.745 47.826 6.21 0.00 45.71 3.50
217 218 4.227538 CGACTGTCTACTACAACAGGTTG 58.772 47.826 10.45 10.45 45.71 3.77
225 226 3.030652 CAACAGGTTGTGCCCGAC 58.969 61.111 4.02 0.00 38.26 4.79
226 227 1.525995 CAACAGGTTGTGCCCGACT 60.526 57.895 4.02 0.00 38.26 4.18
227 228 1.227853 AACAGGTTGTGCCCGACTC 60.228 57.895 0.00 0.00 38.26 3.36
228 229 2.358737 CAGGTTGTGCCCGACTCC 60.359 66.667 0.00 0.00 38.26 3.85
229 230 4.003788 AGGTTGTGCCCGACTCCG 62.004 66.667 0.00 0.00 38.26 4.63
246 247 4.996434 GGCGATGGAGGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
247 248 3.928779 GCGATGGAGGGGCGATGA 61.929 66.667 0.00 0.00 0.00 2.92
248 249 2.029666 CGATGGAGGGGCGATGAC 59.970 66.667 0.00 0.00 0.00 3.06
249 250 2.029666 GATGGAGGGGCGATGACG 59.970 66.667 0.00 0.00 42.93 4.35
250 251 3.521529 GATGGAGGGGCGATGACGG 62.522 68.421 0.00 0.00 40.15 4.79
272 273 3.546397 GCGCCTTCGACTCGCTTC 61.546 66.667 15.17 0.00 44.79 3.86
273 274 2.126463 CGCCTTCGACTCGCTTCA 60.126 61.111 0.00 0.00 38.10 3.02
274 275 2.155194 CGCCTTCGACTCGCTTCAG 61.155 63.158 0.00 0.00 38.10 3.02
275 276 1.080434 GCCTTCGACTCGCTTCAGT 60.080 57.895 0.00 0.00 0.00 3.41
276 277 1.347817 GCCTTCGACTCGCTTCAGTG 61.348 60.000 0.00 0.00 0.00 3.66
277 278 1.347817 CCTTCGACTCGCTTCAGTGC 61.348 60.000 0.00 0.00 0.00 4.40
278 279 0.387878 CTTCGACTCGCTTCAGTGCT 60.388 55.000 0.00 0.00 0.00 4.40
279 280 0.664466 TTCGACTCGCTTCAGTGCTG 60.664 55.000 0.00 0.00 0.00 4.41
280 281 2.091112 CGACTCGCTTCAGTGCTGG 61.091 63.158 0.00 0.00 0.00 4.85
281 282 1.005630 GACTCGCTTCAGTGCTGGT 60.006 57.895 0.00 0.00 0.00 4.00
282 283 0.243907 GACTCGCTTCAGTGCTGGTA 59.756 55.000 0.00 0.00 0.00 3.25
283 284 0.244994 ACTCGCTTCAGTGCTGGTAG 59.755 55.000 0.00 0.00 0.00 3.18
284 285 0.244994 CTCGCTTCAGTGCTGGTAGT 59.755 55.000 0.00 0.00 0.00 2.73
285 286 0.679505 TCGCTTCAGTGCTGGTAGTT 59.320 50.000 0.00 0.00 0.00 2.24
286 287 0.792640 CGCTTCAGTGCTGGTAGTTG 59.207 55.000 0.00 0.00 0.00 3.16
287 288 1.873903 CGCTTCAGTGCTGGTAGTTGT 60.874 52.381 0.00 0.00 0.00 3.32
288 289 1.801178 GCTTCAGTGCTGGTAGTTGTC 59.199 52.381 0.00 0.00 0.00 3.18
289 290 2.061773 CTTCAGTGCTGGTAGTTGTCG 58.938 52.381 0.00 0.00 0.00 4.35
290 291 0.319555 TCAGTGCTGGTAGTTGTCGC 60.320 55.000 0.00 0.00 0.00 5.19
291 292 0.319900 CAGTGCTGGTAGTTGTCGCT 60.320 55.000 0.00 0.00 0.00 4.93
292 293 1.067846 CAGTGCTGGTAGTTGTCGCTA 60.068 52.381 0.00 0.00 0.00 4.26
293 294 1.202582 AGTGCTGGTAGTTGTCGCTAG 59.797 52.381 0.00 0.00 0.00 3.42
294 295 0.530744 TGCTGGTAGTTGTCGCTAGG 59.469 55.000 0.00 0.00 0.00 3.02
295 296 0.531200 GCTGGTAGTTGTCGCTAGGT 59.469 55.000 0.00 0.00 0.00 3.08
296 297 1.736032 GCTGGTAGTTGTCGCTAGGTG 60.736 57.143 0.00 0.00 0.00 4.00
297 298 0.892755 TGGTAGTTGTCGCTAGGTGG 59.107 55.000 0.00 0.00 0.00 4.61
298 299 0.893447 GGTAGTTGTCGCTAGGTGGT 59.107 55.000 0.00 0.00 0.00 4.16
299 300 1.135170 GGTAGTTGTCGCTAGGTGGTC 60.135 57.143 0.00 0.00 0.00 4.02
300 301 1.817447 GTAGTTGTCGCTAGGTGGTCT 59.183 52.381 0.00 0.00 0.00 3.85
301 302 2.211250 AGTTGTCGCTAGGTGGTCTA 57.789 50.000 0.00 0.00 0.00 2.59
302 303 1.817447 AGTTGTCGCTAGGTGGTCTAC 59.183 52.381 0.00 0.00 0.00 2.59
303 304 0.806868 TTGTCGCTAGGTGGTCTACG 59.193 55.000 0.00 0.00 0.00 3.51
304 305 1.028330 TGTCGCTAGGTGGTCTACGG 61.028 60.000 0.00 0.00 0.00 4.02
305 306 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
306 307 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
307 308 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
308 309 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
309 310 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
310 311 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
311 312 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
312 313 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
313 314 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
314 315 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
315 316 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
316 317 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
317 318 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
318 319 5.475909 GTGGTCTACGGATCTGGATGTAATA 59.524 44.000 6.47 0.00 0.00 0.98
319 320 6.153000 GTGGTCTACGGATCTGGATGTAATAT 59.847 42.308 6.47 0.00 0.00 1.28
320 321 6.377429 TGGTCTACGGATCTGGATGTAATATC 59.623 42.308 6.47 0.00 0.00 1.63
321 322 6.603997 GGTCTACGGATCTGGATGTAATATCT 59.396 42.308 6.47 0.00 0.00 1.98
322 323 7.774157 GGTCTACGGATCTGGATGTAATATCTA 59.226 40.741 6.47 0.00 0.00 1.98
323 324 9.344772 GTCTACGGATCTGGATGTAATATCTAT 57.655 37.037 6.47 0.00 0.00 1.98
324 325 9.922477 TCTACGGATCTGGATGTAATATCTATT 57.078 33.333 6.47 0.00 0.00 1.73
348 349 8.819643 TTATTTTTGGTATTTGTTGTACTGCC 57.180 30.769 0.00 0.00 0.00 4.85
349 350 5.854010 TTTTGGTATTTGTTGTACTGCCA 57.146 34.783 0.00 0.00 0.00 4.92
350 351 6.412362 TTTTGGTATTTGTTGTACTGCCAT 57.588 33.333 0.00 0.00 0.00 4.40
351 352 5.384063 TTGGTATTTGTTGTACTGCCATG 57.616 39.130 0.00 0.00 0.00 3.66
352 353 4.657013 TGGTATTTGTTGTACTGCCATGA 58.343 39.130 0.00 0.00 0.00 3.07
353 354 5.260424 TGGTATTTGTTGTACTGCCATGAT 58.740 37.500 0.00 0.00 0.00 2.45
354 355 5.714333 TGGTATTTGTTGTACTGCCATGATT 59.286 36.000 0.00 0.00 0.00 2.57
355 356 6.035843 GGTATTTGTTGTACTGCCATGATTG 58.964 40.000 0.00 0.00 0.00 2.67
356 357 5.981088 ATTTGTTGTACTGCCATGATTGA 57.019 34.783 0.00 0.00 0.00 2.57
357 358 5.781210 TTTGTTGTACTGCCATGATTGAA 57.219 34.783 0.00 0.00 0.00 2.69
358 359 5.781210 TTGTTGTACTGCCATGATTGAAA 57.219 34.783 0.00 0.00 0.00 2.69
359 360 5.981088 TGTTGTACTGCCATGATTGAAAT 57.019 34.783 0.00 0.00 0.00 2.17
360 361 5.953183 TGTTGTACTGCCATGATTGAAATC 58.047 37.500 0.00 0.00 35.97 2.17
361 362 4.880886 TGTACTGCCATGATTGAAATCG 57.119 40.909 0.00 0.00 38.26 3.34
362 363 3.627123 TGTACTGCCATGATTGAAATCGG 59.373 43.478 0.00 0.00 38.26 4.18
363 364 3.003394 ACTGCCATGATTGAAATCGGA 57.997 42.857 0.00 0.00 38.26 4.55
364 365 3.355378 ACTGCCATGATTGAAATCGGAA 58.645 40.909 0.00 0.00 38.26 4.30
365 366 3.763360 ACTGCCATGATTGAAATCGGAAA 59.237 39.130 0.00 0.00 38.26 3.13
366 367 4.403432 ACTGCCATGATTGAAATCGGAAAT 59.597 37.500 0.00 0.00 38.26 2.17
367 368 5.105228 ACTGCCATGATTGAAATCGGAAATT 60.105 36.000 0.00 0.00 38.26 1.82
368 369 5.732633 TGCCATGATTGAAATCGGAAATTT 58.267 33.333 0.00 0.00 38.26 1.82
369 370 6.171921 TGCCATGATTGAAATCGGAAATTTT 58.828 32.000 0.00 0.00 38.26 1.82
370 371 6.313411 TGCCATGATTGAAATCGGAAATTTTC 59.687 34.615 0.00 0.24 38.26 2.29
371 372 6.536224 GCCATGATTGAAATCGGAAATTTTCT 59.464 34.615 8.93 0.00 38.26 2.52
372 373 7.254218 GCCATGATTGAAATCGGAAATTTTCTC 60.254 37.037 8.93 0.00 38.26 2.87
373 374 7.043854 CCATGATTGAAATCGGAAATTTTCTCG 60.044 37.037 8.93 10.38 38.26 4.04
374 375 7.139896 TGATTGAAATCGGAAATTTTCTCGA 57.860 32.000 18.42 18.42 38.26 4.04
375 376 7.589395 TGATTGAAATCGGAAATTTTCTCGAA 58.411 30.769 19.38 8.97 38.26 3.71
376 377 8.079203 TGATTGAAATCGGAAATTTTCTCGAAA 58.921 29.630 19.38 12.90 38.26 3.46
377 378 8.810652 ATTGAAATCGGAAATTTTCTCGAAAA 57.189 26.923 19.38 7.22 43.48 2.29
378 379 8.635877 TTGAAATCGGAAATTTTCTCGAAAAA 57.364 26.923 19.38 12.13 42.71 1.94
405 406 3.610669 CGCGATGGAGGGAGGGAG 61.611 72.222 0.00 0.00 0.00 4.30
406 407 3.237741 GCGATGGAGGGAGGGAGG 61.238 72.222 0.00 0.00 0.00 4.30
407 408 3.237741 CGATGGAGGGAGGGAGGC 61.238 72.222 0.00 0.00 0.00 4.70
408 409 2.040464 GATGGAGGGAGGGAGGCA 60.040 66.667 0.00 0.00 0.00 4.75
409 410 1.463018 GATGGAGGGAGGGAGGCAT 60.463 63.158 0.00 0.00 0.00 4.40
410 411 1.773391 ATGGAGGGAGGGAGGCATG 60.773 63.158 0.00 0.00 0.00 4.06
411 412 3.174265 GGAGGGAGGGAGGCATGG 61.174 72.222 0.00 0.00 0.00 3.66
412 413 3.883549 GAGGGAGGGAGGCATGGC 61.884 72.222 12.14 12.14 0.00 4.40
449 450 2.465920 GACTCAACGTCGCGCTTG 59.534 61.111 5.56 2.86 32.04 4.01
679 717 2.272447 CGCCCGTTTCCACCCATTT 61.272 57.895 0.00 0.00 0.00 2.32
683 721 1.899142 CCCGTTTCCACCCATTTTCAT 59.101 47.619 0.00 0.00 0.00 2.57
686 724 3.574614 CGTTTCCACCCATTTTCATCAC 58.425 45.455 0.00 0.00 0.00 3.06
687 725 3.613910 CGTTTCCACCCATTTTCATCACC 60.614 47.826 0.00 0.00 0.00 4.02
688 726 3.541242 TTCCACCCATTTTCATCACCT 57.459 42.857 0.00 0.00 0.00 4.00
689 727 3.085952 TCCACCCATTTTCATCACCTC 57.914 47.619 0.00 0.00 0.00 3.85
690 728 2.102578 CCACCCATTTTCATCACCTCC 58.897 52.381 0.00 0.00 0.00 4.30
691 729 2.291800 CCACCCATTTTCATCACCTCCT 60.292 50.000 0.00 0.00 0.00 3.69
692 730 3.053693 CCACCCATTTTCATCACCTCCTA 60.054 47.826 0.00 0.00 0.00 2.94
694 732 3.053619 ACCCATTTTCATCACCTCCTACC 60.054 47.826 0.00 0.00 0.00 3.18
703 741 1.115467 CACCTCCTACCACTAGCAGG 58.885 60.000 0.43 0.43 0.00 4.85
711 749 5.088730 TCCTACCACTAGCAGGAGTAAAAA 58.911 41.667 8.70 0.00 33.48 1.94
712 750 5.724854 TCCTACCACTAGCAGGAGTAAAAAT 59.275 40.000 8.70 0.00 33.48 1.82
713 751 6.049790 CCTACCACTAGCAGGAGTAAAAATC 58.950 44.000 8.70 0.00 0.00 2.17
780 819 1.583054 CCCTTCTTTATTCCGCCTCG 58.417 55.000 0.00 0.00 0.00 4.63
866 913 0.688087 CCTCCCCACTCTACTCCACC 60.688 65.000 0.00 0.00 0.00 4.61
903 950 4.329545 TCAACCGACCAGCCTGCC 62.330 66.667 0.00 0.00 0.00 4.85
937 984 3.664495 TCGACTCGGACGAGCTTT 58.336 55.556 20.46 2.36 45.54 3.51
993 1045 4.688021 CTGGAGGACTGACTGCTAATTAC 58.312 47.826 0.00 0.00 0.00 1.89
996 1048 5.248477 TGGAGGACTGACTGCTAATTACTTT 59.752 40.000 0.00 0.00 0.00 2.66
1006 1079 5.126061 ACTGCTAATTACTTTGCAATGGAGG 59.874 40.000 15.92 2.08 41.45 4.30
1045 1121 4.389576 GCGGCGCAGGAGTTTGTG 62.390 66.667 29.21 0.00 0.00 3.33
1050 1126 2.647297 GCAGGAGTTTGTGCTGGC 59.353 61.111 0.00 0.00 44.68 4.85
1056 1132 4.347453 GTTTGTGCTGGCGCTGGG 62.347 66.667 7.64 0.00 36.97 4.45
1076 1152 2.558313 GGTGAGCTTGAAGTGCGC 59.442 61.111 0.00 0.00 35.28 6.09
1086 1162 2.748268 GAAGTGCGCCTTCTCTCTG 58.252 57.895 23.24 0.00 45.19 3.35
1087 1163 1.357991 GAAGTGCGCCTTCTCTCTGC 61.358 60.000 23.24 4.26 45.19 4.26
1093 1169 2.107903 GCCTTCTCTCTGCTGCTGC 61.108 63.158 8.89 8.89 40.20 5.25
1301 1389 2.571216 CGGTCAACCTCACCTCCGT 61.571 63.158 0.00 0.00 34.38 4.69
1813 1907 1.156736 CAACAACTACTTCAGGGGCG 58.843 55.000 0.00 0.00 0.00 6.13
1814 1908 0.605589 AACAACTACTTCAGGGGCGC 60.606 55.000 0.00 0.00 0.00 6.53
1815 1909 2.100631 CAACTACTTCAGGGGCGCG 61.101 63.158 0.00 0.00 0.00 6.86
2382 2476 1.265905 GCCGGAGCGAAAGAAGAAAAA 59.734 47.619 5.05 0.00 0.00 1.94
2505 2599 1.301401 CGGCGAGGACACCAAGAAA 60.301 57.895 0.00 0.00 0.00 2.52
2511 2605 2.155279 GAGGACACCAAGAAAAGAGCC 58.845 52.381 0.00 0.00 0.00 4.70
2526 2620 4.301027 GCCGGGAGCTACATCGGG 62.301 72.222 14.58 3.29 42.43 5.14
2700 2797 1.999051 GAGCATCGTGTACAAGGCG 59.001 57.895 8.98 3.51 0.00 5.52
2706 2803 2.667318 CGTGTACAAGGCGGTGCTG 61.667 63.158 0.00 0.00 0.00 4.41
2787 2884 2.507324 GACTTCGAGGCGCAGGTC 60.507 66.667 10.83 0.00 0.00 3.85
2920 3018 2.098831 GTCGCCTTCACCCGTAAGC 61.099 63.158 0.00 0.00 0.00 3.09
2928 3026 3.400054 ACCCGTAAGCCCTGCTCC 61.400 66.667 0.00 0.00 38.25 4.70
2939 3037 1.751927 CCTGCTCCACTCCATTGCC 60.752 63.158 0.00 0.00 0.00 4.52
2941 3042 0.395311 CTGCTCCACTCCATTGCCAT 60.395 55.000 0.00 0.00 0.00 4.40
2953 3058 7.151308 CACTCCATTGCCATTACAAGTTTTTA 58.849 34.615 0.00 0.00 31.96 1.52
2958 3063 8.872845 CCATTGCCATTACAAGTTTTTATTCTC 58.127 33.333 0.00 0.00 31.96 2.87
2960 3065 6.930731 TGCCATTACAAGTTTTTATTCTCCC 58.069 36.000 0.00 0.00 0.00 4.30
2976 3102 9.541143 TTTATTCTCCCTTTTTCATTGTTCAAC 57.459 29.630 0.00 0.00 0.00 3.18
2988 3114 8.655651 TTTCATTGTTCAACCTTAATTTCCAC 57.344 30.769 0.00 0.00 0.00 4.02
3003 3129 4.993029 TTTCCACGAAATTGTTCAACCT 57.007 36.364 0.00 0.00 32.89 3.50
3005 3131 6.452494 TTTCCACGAAATTGTTCAACCTTA 57.548 33.333 0.00 0.00 32.89 2.69
3008 3134 7.045126 TCCACGAAATTGTTCAACCTTAATT 57.955 32.000 0.00 0.00 32.89 1.40
3051 3427 9.683069 GCTGTAAATCAATATGAGTTAATTGGG 57.317 33.333 2.27 0.00 38.43 4.12
3054 3430 9.878599 GTAAATCAATATGAGTTAATTGGGTCG 57.121 33.333 2.27 0.00 38.43 4.79
3061 3437 3.007635 GAGTTAATTGGGTCGGGACAAG 58.992 50.000 0.75 0.00 0.00 3.16
3126 3516 9.772973 TTAGCAGTAACTCTTTCTTGATTGTTA 57.227 29.630 0.00 0.00 0.00 2.41
3128 3518 7.173390 AGCAGTAACTCTTTCTTGATTGTTACC 59.827 37.037 0.00 0.00 39.97 2.85
3131 3521 9.220767 AGTAACTCTTTCTTGATTGTTACCATC 57.779 33.333 0.00 0.00 39.97 3.51
3137 3527 7.606456 TCTTTCTTGATTGTTACCATCAGTACC 59.394 37.037 0.00 0.00 0.00 3.34
3138 3528 6.620877 TCTTGATTGTTACCATCAGTACCT 57.379 37.500 0.00 0.00 0.00 3.08
3144 3727 9.747898 TGATTGTTACCATCAGTACCTAAAATT 57.252 29.630 0.00 0.00 0.00 1.82
3161 3744 9.627123 ACCTAAAATTTACAGCAGCTATTGATA 57.373 29.630 0.00 0.00 0.00 2.15
3176 3759 9.447040 CAGCTATTGATAGATTTTCATGTGTTG 57.553 33.333 2.25 0.00 32.05 3.33
3489 4072 2.447714 GGACCTCTCCCAGATGCCC 61.448 68.421 0.00 0.00 0.00 5.36
3630 4219 4.527583 CTGGAGCTGCTCTCGGGC 62.528 72.222 27.09 12.10 42.82 6.13
3855 4453 1.355563 CGCGCTCCTCGACAGAATA 59.644 57.895 5.56 0.00 41.67 1.75
3857 4455 0.100682 GCGCTCCTCGACAGAATACA 59.899 55.000 0.00 0.00 41.67 2.29
3859 4457 2.186076 CGCTCCTCGACAGAATACAAC 58.814 52.381 0.00 0.00 41.67 3.32
3860 4458 2.541556 GCTCCTCGACAGAATACAACC 58.458 52.381 0.00 0.00 0.00 3.77
3861 4459 2.738964 GCTCCTCGACAGAATACAACCC 60.739 54.545 0.00 0.00 0.00 4.11
3862 4460 2.496070 CTCCTCGACAGAATACAACCCA 59.504 50.000 0.00 0.00 0.00 4.51
3863 4461 2.232941 TCCTCGACAGAATACAACCCAC 59.767 50.000 0.00 0.00 0.00 4.61
3910 4511 4.579869 TGAAACTCCTCCTTACTGATTGC 58.420 43.478 0.00 0.00 0.00 3.56
3942 4543 2.691409 TGTAGGATAGCAGTGCAACC 57.309 50.000 19.20 16.39 37.80 3.77
3996 4620 5.617609 TGCGTCACTAATTTTTGATCTTCG 58.382 37.500 0.00 0.00 0.00 3.79
4044 4679 1.865788 TTGCGGTTTCATGCTCTGCC 61.866 55.000 11.00 0.00 33.14 4.85
4045 4680 3.056313 GCGGTTTCATGCTCTGCCC 62.056 63.158 0.00 0.00 0.00 5.36
4046 4681 1.377725 CGGTTTCATGCTCTGCCCT 60.378 57.895 0.00 0.00 0.00 5.19
4047 4682 1.651240 CGGTTTCATGCTCTGCCCTG 61.651 60.000 0.00 0.00 0.00 4.45
4048 4683 1.509923 GTTTCATGCTCTGCCCTGC 59.490 57.895 0.00 0.00 0.00 4.85
4049 4684 1.679977 TTTCATGCTCTGCCCTGCC 60.680 57.895 0.00 0.00 0.00 4.85
4050 4685 2.429235 TTTCATGCTCTGCCCTGCCA 62.429 55.000 0.00 0.00 0.00 4.92
4051 4686 2.123854 CATGCTCTGCCCTGCCAT 60.124 61.111 0.00 0.00 0.00 4.40
4052 4687 2.123854 ATGCTCTGCCCTGCCATG 60.124 61.111 0.00 0.00 0.00 3.66
4053 4688 2.686572 ATGCTCTGCCCTGCCATGA 61.687 57.895 0.00 0.00 0.00 3.07
4092 4727 2.030946 GCCATTGTTACAGCACGAGATC 59.969 50.000 0.00 0.00 0.00 2.75
4107 4742 2.578495 GAGATCGCTGTTTGTTGCAAG 58.422 47.619 0.00 0.00 0.00 4.01
4108 4743 1.055338 GATCGCTGTTTGTTGCAAGC 58.945 50.000 0.00 0.00 0.00 4.01
4109 4744 0.670162 ATCGCTGTTTGTTGCAAGCT 59.330 45.000 0.00 0.00 0.00 3.74
4116 4751 2.111756 GTTTGTTGCAAGCTCTGTTCG 58.888 47.619 0.00 0.00 0.00 3.95
4131 4766 3.918253 TTCGGTGGTGCCATGGCTC 62.918 63.158 35.53 31.20 42.51 4.70
4156 4798 6.266330 CCTGGAATTGGAAGAAACTTTCTCTT 59.734 38.462 4.46 0.00 39.61 2.85
4165 4807 6.915300 GGAAGAAACTTTCTCTTTGCTTCTTC 59.085 38.462 4.46 11.41 43.12 2.87
4252 4894 0.667993 ACTTTGTGTTGGGTGATGCG 59.332 50.000 0.00 0.00 0.00 4.73
4268 4910 3.195610 TGATGCGGAGTTGATTGTCTAGT 59.804 43.478 0.00 0.00 0.00 2.57
4269 4911 3.232213 TGCGGAGTTGATTGTCTAGTC 57.768 47.619 0.00 0.00 0.00 2.59
4270 4912 2.826128 TGCGGAGTTGATTGTCTAGTCT 59.174 45.455 0.00 0.00 0.00 3.24
4272 4914 4.096532 TGCGGAGTTGATTGTCTAGTCTAG 59.903 45.833 0.00 0.00 0.00 2.43
4274 4916 5.504994 GCGGAGTTGATTGTCTAGTCTAGAG 60.505 48.000 9.97 0.00 35.04 2.43
4275 4917 5.504994 CGGAGTTGATTGTCTAGTCTAGAGC 60.505 48.000 9.97 6.24 35.04 4.09
4276 4918 5.358442 GGAGTTGATTGTCTAGTCTAGAGCA 59.642 44.000 9.97 8.56 35.04 4.26
4277 4919 6.040391 GGAGTTGATTGTCTAGTCTAGAGCAT 59.960 42.308 9.97 5.28 35.04 3.79
4278 4920 6.804677 AGTTGATTGTCTAGTCTAGAGCATG 58.195 40.000 9.97 0.00 35.04 4.06
4299 4941 3.530910 AACCGGGAGCCGTGTCTTG 62.531 63.158 6.32 0.00 46.80 3.02
4307 4949 1.009675 GCCGTGTCTTGTGCACTTG 60.010 57.895 19.41 10.70 34.91 3.16
4388 6717 4.998671 AGATGAGTACTGATCCAGTGTG 57.001 45.455 17.47 0.00 45.01 3.82
4399 6728 0.614979 TCCAGTGTGCTCTACTCCCC 60.615 60.000 0.00 0.00 0.00 4.81
4403 6732 0.533032 GTGTGCTCTACTCCCCTCAC 59.467 60.000 0.00 0.00 0.00 3.51
4426 7394 7.038048 CACTTCTGATAGTACATTTGCTCTGA 58.962 38.462 0.00 0.00 0.00 3.27
4453 7421 6.787085 AAAATCGTGTCCTTCAGTTTAGAG 57.213 37.500 0.00 0.00 0.00 2.43
4454 7422 3.299340 TCGTGTCCTTCAGTTTAGAGC 57.701 47.619 0.00 0.00 0.00 4.09
4457 7425 4.156190 TCGTGTCCTTCAGTTTAGAGCTAG 59.844 45.833 0.00 0.00 0.00 3.42
4458 7426 4.675671 CGTGTCCTTCAGTTTAGAGCTAGG 60.676 50.000 0.00 0.00 0.00 3.02
4462 7430 5.361285 GTCCTTCAGTTTAGAGCTAGGATCA 59.639 44.000 0.00 0.00 33.31 2.92
4463 7431 5.596361 TCCTTCAGTTTAGAGCTAGGATCAG 59.404 44.000 0.00 0.00 0.00 2.90
4464 7432 5.362430 CCTTCAGTTTAGAGCTAGGATCAGT 59.638 44.000 0.00 0.00 0.00 3.41
4467 7435 3.386402 AGTTTAGAGCTAGGATCAGTGGC 59.614 47.826 0.00 0.00 0.00 5.01
4468 7436 2.755952 TAGAGCTAGGATCAGTGGCA 57.244 50.000 5.61 0.00 0.00 4.92
4469 7437 1.412079 AGAGCTAGGATCAGTGGCAG 58.588 55.000 5.61 0.00 0.00 4.85
4473 7441 1.757118 GCTAGGATCAGTGGCAGTACA 59.243 52.381 0.00 0.00 0.00 2.90
4475 7443 1.644509 AGGATCAGTGGCAGTACACA 58.355 50.000 0.00 0.00 43.72 3.72
4477 7445 1.001974 GGATCAGTGGCAGTACACACA 59.998 52.381 14.89 0.00 43.72 3.72
4478 7446 2.355108 GGATCAGTGGCAGTACACACAT 60.355 50.000 14.89 3.97 43.72 3.21
4565 7562 9.276590 CTTTTTCCCAAGAATCTTAAGCATTTT 57.723 29.630 0.00 0.00 0.00 1.82
4601 7598 7.394641 AGGAATACATGTTCTCTTCTTTTTCCC 59.605 37.037 2.30 0.00 0.00 3.97
4603 7600 7.693969 ATACATGTTCTCTTCTTTTTCCCAG 57.306 36.000 2.30 0.00 0.00 4.45
4627 7624 5.450965 GGAATCTTCAGCATTTGTGGTATGG 60.451 44.000 0.00 0.00 0.00 2.74
4635 7677 1.614996 TTTGTGGTATGGCAGTGGTG 58.385 50.000 0.00 0.00 0.00 4.17
4651 7693 2.543777 GGTGGCACAACTAGAACAGA 57.456 50.000 20.82 0.00 46.61 3.41
4652 7694 3.059352 GGTGGCACAACTAGAACAGAT 57.941 47.619 20.82 0.00 46.61 2.90
4653 7695 3.003480 GGTGGCACAACTAGAACAGATC 58.997 50.000 20.82 0.00 46.61 2.75
4654 7696 3.557054 GGTGGCACAACTAGAACAGATCA 60.557 47.826 20.82 0.00 46.61 2.92
4655 7697 4.065088 GTGGCACAACTAGAACAGATCAA 58.935 43.478 13.86 0.00 44.16 2.57
4658 7700 4.319177 GCACAACTAGAACAGATCAAGGT 58.681 43.478 0.00 0.00 0.00 3.50
4660 7702 4.692625 CACAACTAGAACAGATCAAGGTGG 59.307 45.833 0.00 0.00 0.00 4.61
4661 7703 3.618690 ACTAGAACAGATCAAGGTGGC 57.381 47.619 0.00 0.00 0.00 5.01
4662 7704 3.177228 ACTAGAACAGATCAAGGTGGCT 58.823 45.455 0.00 0.00 0.00 4.75
4665 7707 1.003580 GAACAGATCAAGGTGGCTGGA 59.996 52.381 0.00 0.00 32.82 3.86
4667 7709 0.107312 CAGATCAAGGTGGCTGGAGG 60.107 60.000 0.00 0.00 0.00 4.30
4668 7710 0.548682 AGATCAAGGTGGCTGGAGGT 60.549 55.000 0.00 0.00 0.00 3.85
4669 7711 0.393537 GATCAAGGTGGCTGGAGGTG 60.394 60.000 0.00 0.00 0.00 4.00
4670 7712 1.856539 ATCAAGGTGGCTGGAGGTGG 61.857 60.000 0.00 0.00 0.00 4.61
4671 7713 2.121963 AAGGTGGCTGGAGGTGGA 60.122 61.111 0.00 0.00 0.00 4.02
4672 7714 2.529744 AAGGTGGCTGGAGGTGGAC 61.530 63.158 0.00 0.00 0.00 4.02
4673 7715 3.249189 GGTGGCTGGAGGTGGACA 61.249 66.667 0.00 0.00 0.00 4.02
4676 7718 2.217038 TGGCTGGAGGTGGACAGAC 61.217 63.158 0.00 0.00 43.12 3.51
4748 7790 6.423905 TCTGCAAGAATCAGTGTGTAAGTTAC 59.576 38.462 6.06 6.06 42.31 2.50
4750 7792 7.438564 TGCAAGAATCAGTGTGTAAGTTACTA 58.561 34.615 14.00 1.06 0.00 1.82
4900 7944 1.519408 TTACGCAGCTCACCCTTTTC 58.481 50.000 0.00 0.00 0.00 2.29
4905 7949 2.079925 GCAGCTCACCCTTTTCTGTAG 58.920 52.381 0.00 0.00 0.00 2.74
4906 7950 2.079925 CAGCTCACCCTTTTCTGTAGC 58.920 52.381 0.00 0.00 0.00 3.58
4908 7952 1.608283 GCTCACCCTTTTCTGTAGCGT 60.608 52.381 0.00 0.00 0.00 5.07
4912 7956 0.739813 CCCTTTTCTGTAGCGTCCGG 60.740 60.000 0.00 0.00 0.00 5.14
4919 7963 2.202623 GTAGCGTCCGGCAGACAG 60.203 66.667 0.00 0.00 46.69 3.51
4920 7964 3.449227 TAGCGTCCGGCAGACAGG 61.449 66.667 0.00 0.00 46.69 4.00
4921 7965 3.931190 TAGCGTCCGGCAGACAGGA 62.931 63.158 0.00 0.00 46.69 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.090052 GCCCACCAACGATGCTAGAC 61.090 60.000 0.00 0.00 0.00 2.59
1 2 1.220749 GCCCACCAACGATGCTAGA 59.779 57.895 0.00 0.00 0.00 2.43
2 3 2.173669 CGCCCACCAACGATGCTAG 61.174 63.158 0.00 0.00 0.00 3.42
3 4 2.125310 CGCCCACCAACGATGCTA 60.125 61.111 0.00 0.00 0.00 3.49
4 5 4.329545 ACGCCCACCAACGATGCT 62.330 61.111 0.00 0.00 0.00 3.79
5 6 4.101790 CACGCCCACCAACGATGC 62.102 66.667 0.00 0.00 0.00 3.91
6 7 2.668212 ACACGCCCACCAACGATG 60.668 61.111 0.00 0.00 0.00 3.84
7 8 2.668212 CACACGCCCACCAACGAT 60.668 61.111 0.00 0.00 0.00 3.73
8 9 4.920112 CCACACGCCCACCAACGA 62.920 66.667 0.00 0.00 0.00 3.85
9 10 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
10 11 2.978010 CTCCACACGCCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
11 12 4.263572 CCTCCACACGCCCACCAA 62.264 66.667 0.00 0.00 0.00 3.67
14 15 4.250305 ACACCTCCACACGCCCAC 62.250 66.667 0.00 0.00 0.00 4.61
15 16 4.248842 CACACCTCCACACGCCCA 62.249 66.667 0.00 0.00 0.00 5.36
16 17 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
17 18 2.665185 GACACACCTCCACACGCC 60.665 66.667 0.00 0.00 0.00 5.68
18 19 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
19 20 4.655527 GAGACACACCTCCACACG 57.344 61.111 0.00 0.00 0.00 4.49
25 26 4.436998 CCGCCGGAGACACACCTC 62.437 72.222 5.05 0.00 0.00 3.85
28 29 4.736896 GACCCGCCGGAGACACAC 62.737 72.222 5.05 0.00 0.00 3.82
29 30 2.849096 ATAGACCCGCCGGAGACACA 62.849 60.000 5.05 0.00 0.00 3.72
30 31 2.073037 GATAGACCCGCCGGAGACAC 62.073 65.000 5.05 0.00 0.00 3.67
31 32 1.826921 GATAGACCCGCCGGAGACA 60.827 63.158 5.05 0.00 0.00 3.41
32 33 1.108132 AAGATAGACCCGCCGGAGAC 61.108 60.000 5.05 0.00 0.00 3.36
33 34 0.396695 AAAGATAGACCCGCCGGAGA 60.397 55.000 5.05 0.00 0.00 3.71
34 35 0.249489 CAAAGATAGACCCGCCGGAG 60.249 60.000 5.05 0.00 0.00 4.63
35 36 0.685131 TCAAAGATAGACCCGCCGGA 60.685 55.000 5.05 0.00 0.00 5.14
36 37 0.393077 ATCAAAGATAGACCCGCCGG 59.607 55.000 0.00 0.00 0.00 6.13
37 38 1.068588 TCATCAAAGATAGACCCGCCG 59.931 52.381 0.00 0.00 0.00 6.46
38 39 2.910688 TCATCAAAGATAGACCCGCC 57.089 50.000 0.00 0.00 0.00 6.13
39 40 5.514279 CAATTTCATCAAAGATAGACCCGC 58.486 41.667 0.00 0.00 0.00 6.13
40 41 5.297776 AGCAATTTCATCAAAGATAGACCCG 59.702 40.000 0.00 0.00 0.00 5.28
41 42 6.512415 CGAGCAATTTCATCAAAGATAGACCC 60.512 42.308 0.00 0.00 0.00 4.46
42 43 6.425504 CGAGCAATTTCATCAAAGATAGACC 58.574 40.000 0.00 0.00 0.00 3.85
43 44 6.258727 TCCGAGCAATTTCATCAAAGATAGAC 59.741 38.462 0.00 0.00 0.00 2.59
44 45 6.348498 TCCGAGCAATTTCATCAAAGATAGA 58.652 36.000 0.00 0.00 0.00 1.98
45 46 6.609237 TCCGAGCAATTTCATCAAAGATAG 57.391 37.500 0.00 0.00 0.00 2.08
46 47 6.994496 AGATCCGAGCAATTTCATCAAAGATA 59.006 34.615 0.00 0.00 0.00 1.98
47 48 5.826737 AGATCCGAGCAATTTCATCAAAGAT 59.173 36.000 0.00 0.00 0.00 2.40
48 49 5.188434 AGATCCGAGCAATTTCATCAAAGA 58.812 37.500 0.00 0.00 0.00 2.52
49 50 5.496133 AGATCCGAGCAATTTCATCAAAG 57.504 39.130 0.00 0.00 0.00 2.77
50 51 4.034394 CGAGATCCGAGCAATTTCATCAAA 59.966 41.667 0.00 0.00 41.76 2.69
51 52 3.557185 CGAGATCCGAGCAATTTCATCAA 59.443 43.478 0.00 0.00 41.76 2.57
52 53 3.126073 CGAGATCCGAGCAATTTCATCA 58.874 45.455 0.00 0.00 41.76 3.07
53 54 3.126831 ACGAGATCCGAGCAATTTCATC 58.873 45.455 10.05 0.00 41.76 2.92
54 55 3.126831 GACGAGATCCGAGCAATTTCAT 58.873 45.455 10.05 0.00 41.76 2.57
55 56 2.540515 GACGAGATCCGAGCAATTTCA 58.459 47.619 10.05 0.00 41.76 2.69
56 57 1.518929 CGACGAGATCCGAGCAATTTC 59.481 52.381 10.05 0.00 41.76 2.17
57 58 1.135083 ACGACGAGATCCGAGCAATTT 60.135 47.619 0.00 0.00 41.76 1.82
58 59 0.456221 ACGACGAGATCCGAGCAATT 59.544 50.000 0.00 0.00 41.76 2.32
59 60 0.456221 AACGACGAGATCCGAGCAAT 59.544 50.000 0.00 0.00 41.76 3.56
60 61 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
61 62 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
62 63 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
63 64 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
64 65 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
65 66 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
66 67 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
67 68 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
68 69 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
69 70 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
70 71 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
71 72 0.581529 ACGTAGACGAACAACGACGA 59.418 50.000 9.41 0.00 45.77 4.20
72 73 1.376856 GAACGTAGACGAACAACGACG 59.623 52.381 9.41 0.00 45.77 5.12
73 74 1.376856 CGAACGTAGACGAACAACGAC 59.623 52.381 9.41 0.00 45.77 4.34
74 75 1.003972 ACGAACGTAGACGAACAACGA 60.004 47.619 9.41 0.00 45.77 3.85
76 77 2.098211 CACACGAACGTAGACGAACAAC 60.098 50.000 9.41 0.00 43.02 3.32
77 78 2.110990 CACACGAACGTAGACGAACAA 58.889 47.619 9.41 0.00 43.02 2.83
78 79 1.063912 ACACACGAACGTAGACGAACA 59.936 47.619 9.41 0.00 43.02 3.18
79 80 1.705559 GACACACGAACGTAGACGAAC 59.294 52.381 9.41 1.55 43.02 3.95
80 81 1.599071 AGACACACGAACGTAGACGAA 59.401 47.619 9.41 0.00 43.02 3.85
81 82 1.220529 AGACACACGAACGTAGACGA 58.779 50.000 9.41 0.00 43.02 4.20
82 83 1.967908 GAAGACACACGAACGTAGACG 59.032 52.381 0.00 0.00 46.33 4.18
83 84 2.971915 CAGAAGACACACGAACGTAGAC 59.028 50.000 0.00 0.00 0.00 2.59
84 85 2.874086 TCAGAAGACACACGAACGTAGA 59.126 45.455 0.00 0.00 0.00 2.59
85 86 3.263602 TCAGAAGACACACGAACGTAG 57.736 47.619 0.00 0.00 0.00 3.51
86 87 3.909776 ATCAGAAGACACACGAACGTA 57.090 42.857 0.00 0.00 0.00 3.57
87 88 2.794910 CAATCAGAAGACACACGAACGT 59.205 45.455 0.00 0.00 0.00 3.99
88 89 2.155732 CCAATCAGAAGACACACGAACG 59.844 50.000 0.00 0.00 0.00 3.95
89 90 3.390135 TCCAATCAGAAGACACACGAAC 58.610 45.455 0.00 0.00 0.00 3.95
90 91 3.744238 TCCAATCAGAAGACACACGAA 57.256 42.857 0.00 0.00 0.00 3.85
91 92 3.961480 ATCCAATCAGAAGACACACGA 57.039 42.857 0.00 0.00 0.00 4.35
92 93 5.362556 AAAATCCAATCAGAAGACACACG 57.637 39.130 0.00 0.00 0.00 4.49
93 94 6.860023 CAGAAAAATCCAATCAGAAGACACAC 59.140 38.462 0.00 0.00 0.00 3.82
94 95 6.772233 TCAGAAAAATCCAATCAGAAGACACA 59.228 34.615 0.00 0.00 0.00 3.72
95 96 7.206981 TCAGAAAAATCCAATCAGAAGACAC 57.793 36.000 0.00 0.00 0.00 3.67
96 97 7.886970 AGATCAGAAAAATCCAATCAGAAGACA 59.113 33.333 0.00 0.00 0.00 3.41
97 98 8.278729 AGATCAGAAAAATCCAATCAGAAGAC 57.721 34.615 0.00 0.00 0.00 3.01
98 99 9.388506 GTAGATCAGAAAAATCCAATCAGAAGA 57.611 33.333 0.00 0.00 0.00 2.87
99 100 8.333908 CGTAGATCAGAAAAATCCAATCAGAAG 58.666 37.037 0.00 0.00 0.00 2.85
100 101 7.824289 ACGTAGATCAGAAAAATCCAATCAGAA 59.176 33.333 0.00 0.00 0.00 3.02
101 102 7.331026 ACGTAGATCAGAAAAATCCAATCAGA 58.669 34.615 0.00 0.00 0.00 3.27
102 103 7.545362 ACGTAGATCAGAAAAATCCAATCAG 57.455 36.000 0.00 0.00 0.00 2.90
103 104 7.921786 AACGTAGATCAGAAAAATCCAATCA 57.078 32.000 0.00 0.00 0.00 2.57
106 107 9.667107 AGAATAACGTAGATCAGAAAAATCCAA 57.333 29.630 0.00 0.00 0.00 3.53
107 108 9.667107 AAGAATAACGTAGATCAGAAAAATCCA 57.333 29.630 0.00 0.00 0.00 3.41
113 114 9.521503 CAGATGAAGAATAACGTAGATCAGAAA 57.478 33.333 0.00 0.00 0.00 2.52
114 115 7.649705 GCAGATGAAGAATAACGTAGATCAGAA 59.350 37.037 0.00 0.00 0.00 3.02
115 116 7.142021 GCAGATGAAGAATAACGTAGATCAGA 58.858 38.462 0.00 0.00 0.00 3.27
116 117 6.087423 CGCAGATGAAGAATAACGTAGATCAG 59.913 42.308 0.00 0.00 0.00 2.90
117 118 5.915196 CGCAGATGAAGAATAACGTAGATCA 59.085 40.000 0.00 0.00 0.00 2.92
118 119 5.343593 CCGCAGATGAAGAATAACGTAGATC 59.656 44.000 0.00 0.00 0.00 2.75
119 120 5.223382 CCGCAGATGAAGAATAACGTAGAT 58.777 41.667 0.00 0.00 0.00 1.98
120 121 4.607955 CCGCAGATGAAGAATAACGTAGA 58.392 43.478 0.00 0.00 0.00 2.59
121 122 3.182572 GCCGCAGATGAAGAATAACGTAG 59.817 47.826 0.00 0.00 0.00 3.51
122 123 3.120792 GCCGCAGATGAAGAATAACGTA 58.879 45.455 0.00 0.00 0.00 3.57
123 124 1.933853 GCCGCAGATGAAGAATAACGT 59.066 47.619 0.00 0.00 0.00 3.99
124 125 1.071239 CGCCGCAGATGAAGAATAACG 60.071 52.381 0.00 0.00 0.00 3.18
125 126 1.261619 CCGCCGCAGATGAAGAATAAC 59.738 52.381 0.00 0.00 0.00 1.89
126 127 1.134521 ACCGCCGCAGATGAAGAATAA 60.135 47.619 0.00 0.00 0.00 1.40
127 128 0.464036 ACCGCCGCAGATGAAGAATA 59.536 50.000 0.00 0.00 0.00 1.75
128 129 0.392998 AACCGCCGCAGATGAAGAAT 60.393 50.000 0.00 0.00 0.00 2.40
129 130 1.003839 AACCGCCGCAGATGAAGAA 60.004 52.632 0.00 0.00 0.00 2.52
130 131 1.741401 CAACCGCCGCAGATGAAGA 60.741 57.895 0.00 0.00 0.00 2.87
131 132 2.787249 CAACCGCCGCAGATGAAG 59.213 61.111 0.00 0.00 0.00 3.02
132 133 3.430862 GCAACCGCCGCAGATGAA 61.431 61.111 0.00 0.00 0.00 2.57
133 134 4.393155 AGCAACCGCCGCAGATGA 62.393 61.111 0.00 0.00 39.83 2.92
134 135 4.170062 CAGCAACCGCCGCAGATG 62.170 66.667 0.00 0.00 39.83 2.90
135 136 4.704833 ACAGCAACCGCCGCAGAT 62.705 61.111 0.00 0.00 39.83 2.90
136 137 4.927782 AACAGCAACCGCCGCAGA 62.928 61.111 0.00 0.00 39.83 4.26
137 138 4.389576 GAACAGCAACCGCCGCAG 62.390 66.667 0.00 0.00 39.83 5.18
138 139 4.927782 AGAACAGCAACCGCCGCA 62.928 61.111 0.00 0.00 39.83 5.69
139 140 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
140 141 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
141 142 2.594592 ACCAGAACAGCAACCGCC 60.595 61.111 0.00 0.00 39.83 6.13
142 143 2.639286 CACCAGAACAGCAACCGC 59.361 61.111 0.00 0.00 38.99 5.68
143 144 2.639286 GCACCAGAACAGCAACCG 59.361 61.111 0.00 0.00 0.00 4.44
144 145 2.639286 CGCACCAGAACAGCAACC 59.361 61.111 0.00 0.00 0.00 3.77
145 146 2.050985 GCGCACCAGAACAGCAAC 60.051 61.111 0.30 0.00 0.00 4.17
146 147 2.203195 AGCGCACCAGAACAGCAA 60.203 55.556 11.47 0.00 0.00 3.91
147 148 2.974148 CAGCGCACCAGAACAGCA 60.974 61.111 11.47 0.00 0.00 4.41
148 149 3.730761 CCAGCGCACCAGAACAGC 61.731 66.667 11.47 0.00 0.00 4.40
149 150 2.281070 ACCAGCGCACCAGAACAG 60.281 61.111 11.47 0.00 0.00 3.16
150 151 2.280797 GACCAGCGCACCAGAACA 60.281 61.111 11.47 0.00 0.00 3.18
151 152 2.167398 TAGGACCAGCGCACCAGAAC 62.167 60.000 11.47 0.00 0.00 3.01
152 153 1.911269 TAGGACCAGCGCACCAGAA 60.911 57.895 11.47 0.00 0.00 3.02
153 154 2.283604 TAGGACCAGCGCACCAGA 60.284 61.111 11.47 0.00 0.00 3.86
154 155 2.125512 GTAGGACCAGCGCACCAG 60.126 66.667 11.47 0.00 0.00 4.00
155 156 4.063967 CGTAGGACCAGCGCACCA 62.064 66.667 11.47 0.00 0.00 4.17
166 167 2.062177 GTGCTAAGGCCCCGTAGGA 61.062 63.158 0.00 0.00 45.58 2.94
167 168 2.504519 GTGCTAAGGCCCCGTAGG 59.495 66.667 0.00 0.00 41.97 3.18
168 169 2.106332 CGTGCTAAGGCCCCGTAG 59.894 66.667 0.00 0.00 37.74 3.51
169 170 2.362760 TCGTGCTAAGGCCCCGTA 60.363 61.111 0.00 0.00 37.74 4.02
170 171 4.078516 GTCGTGCTAAGGCCCCGT 62.079 66.667 0.00 0.00 37.74 5.28
172 173 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
173 174 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
174 175 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
175 176 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
176 177 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
177 178 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
178 179 1.210931 CGGGAAGTCGTCGTGCTAA 59.789 57.895 0.00 0.00 0.00 3.09
179 180 1.672030 TCGGGAAGTCGTCGTGCTA 60.672 57.895 0.00 0.00 0.00 3.49
180 181 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
181 182 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
182 183 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
183 184 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
184 185 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
185 186 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
186 187 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
187 188 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
188 189 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
189 190 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
190 191 3.504906 TGTTGTAGTAGACAGTCGGGAAG 59.495 47.826 0.00 0.00 39.88 3.46
191 192 3.489355 TGTTGTAGTAGACAGTCGGGAA 58.511 45.455 0.00 0.00 39.88 3.97
192 193 3.079578 CTGTTGTAGTAGACAGTCGGGA 58.920 50.000 0.00 0.00 39.88 5.14
193 194 2.163815 CCTGTTGTAGTAGACAGTCGGG 59.836 54.545 10.94 0.00 41.24 5.14
194 195 2.818432 ACCTGTTGTAGTAGACAGTCGG 59.182 50.000 10.94 2.54 41.24 4.79
195 196 4.227538 CAACCTGTTGTAGTAGACAGTCG 58.772 47.826 10.94 2.46 41.24 4.18
208 209 1.507141 GAGTCGGGCACAACCTGTTG 61.507 60.000 8.42 8.42 46.11 3.33
209 210 1.227853 GAGTCGGGCACAACCTGTT 60.228 57.895 0.00 0.00 46.11 3.16
210 211 2.426023 GAGTCGGGCACAACCTGT 59.574 61.111 0.00 0.00 46.11 4.00
212 213 4.003788 CGGAGTCGGGCACAACCT 62.004 66.667 0.00 0.00 39.10 3.50
229 230 4.996434 CATCGCCCCTCCATCGCC 62.996 72.222 0.00 0.00 0.00 5.54
230 231 3.928779 TCATCGCCCCTCCATCGC 61.929 66.667 0.00 0.00 0.00 4.58
231 232 2.029666 GTCATCGCCCCTCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
232 233 2.029666 CGTCATCGCCCCTCCATC 59.970 66.667 0.00 0.00 0.00 3.51
233 234 3.550431 CCGTCATCGCCCCTCCAT 61.550 66.667 0.00 0.00 35.54 3.41
256 257 2.126463 TGAAGCGAGTCGAAGGCG 60.126 61.111 18.61 0.00 36.95 5.52
257 258 1.080434 ACTGAAGCGAGTCGAAGGC 60.080 57.895 18.61 0.00 0.00 4.35
258 259 1.347817 GCACTGAAGCGAGTCGAAGG 61.348 60.000 18.61 3.43 0.00 3.46
259 260 0.387878 AGCACTGAAGCGAGTCGAAG 60.388 55.000 18.61 9.84 40.15 3.79
260 261 0.664466 CAGCACTGAAGCGAGTCGAA 60.664 55.000 18.61 0.00 40.15 3.71
261 262 1.081175 CAGCACTGAAGCGAGTCGA 60.081 57.895 18.61 0.00 40.15 4.20
262 263 2.091112 CCAGCACTGAAGCGAGTCG 61.091 63.158 8.54 8.54 40.15 4.18
263 264 0.243907 TACCAGCACTGAAGCGAGTC 59.756 55.000 0.00 0.00 40.15 3.36
264 265 0.244994 CTACCAGCACTGAAGCGAGT 59.755 55.000 0.00 0.00 40.15 4.18
265 266 0.244994 ACTACCAGCACTGAAGCGAG 59.755 55.000 0.00 0.00 40.15 5.03
266 267 0.679505 AACTACCAGCACTGAAGCGA 59.320 50.000 0.00 0.00 40.15 4.93
267 268 0.792640 CAACTACCAGCACTGAAGCG 59.207 55.000 0.00 0.00 40.15 4.68
268 269 1.801178 GACAACTACCAGCACTGAAGC 59.199 52.381 0.00 0.00 0.00 3.86
269 270 2.061773 CGACAACTACCAGCACTGAAG 58.938 52.381 0.00 0.00 0.00 3.02
270 271 1.872237 GCGACAACTACCAGCACTGAA 60.872 52.381 0.00 0.00 0.00 3.02
271 272 0.319555 GCGACAACTACCAGCACTGA 60.320 55.000 0.00 0.00 0.00 3.41
272 273 0.319900 AGCGACAACTACCAGCACTG 60.320 55.000 0.00 0.00 0.00 3.66
273 274 1.202582 CTAGCGACAACTACCAGCACT 59.797 52.381 0.00 0.00 0.00 4.40
274 275 1.630148 CTAGCGACAACTACCAGCAC 58.370 55.000 0.00 0.00 0.00 4.40
275 276 0.530744 CCTAGCGACAACTACCAGCA 59.469 55.000 0.00 0.00 0.00 4.41
276 277 0.531200 ACCTAGCGACAACTACCAGC 59.469 55.000 0.00 0.00 0.00 4.85
277 278 1.135083 CCACCTAGCGACAACTACCAG 60.135 57.143 0.00 0.00 0.00 4.00
278 279 0.892755 CCACCTAGCGACAACTACCA 59.107 55.000 0.00 0.00 0.00 3.25
279 280 0.893447 ACCACCTAGCGACAACTACC 59.107 55.000 0.00 0.00 0.00 3.18
280 281 1.817447 AGACCACCTAGCGACAACTAC 59.183 52.381 0.00 0.00 0.00 2.73
281 282 2.211250 AGACCACCTAGCGACAACTA 57.789 50.000 0.00 0.00 0.00 2.24
282 283 1.817447 GTAGACCACCTAGCGACAACT 59.183 52.381 0.00 0.00 0.00 3.16
283 284 1.467035 CGTAGACCACCTAGCGACAAC 60.467 57.143 0.00 0.00 0.00 3.32
284 285 0.806868 CGTAGACCACCTAGCGACAA 59.193 55.000 0.00 0.00 0.00 3.18
285 286 1.028330 CCGTAGACCACCTAGCGACA 61.028 60.000 0.00 0.00 0.00 4.35
286 287 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
287 288 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
288 289 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
289 290 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
290 291 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
291 292 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
292 293 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
293 294 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
294 295 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
295 296 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
296 297 6.603997 AGATATTACATCCAGATCCGTAGACC 59.396 42.308 0.00 0.00 0.00 3.85
297 298 7.633193 AGATATTACATCCAGATCCGTAGAC 57.367 40.000 0.00 0.00 0.00 2.59
298 299 9.922477 AATAGATATTACATCCAGATCCGTAGA 57.078 33.333 0.00 0.00 0.00 2.59
322 323 9.430623 GGCAGTACAACAAATACCAAAAATAAT 57.569 29.630 0.00 0.00 0.00 1.28
323 324 8.421784 TGGCAGTACAACAAATACCAAAAATAA 58.578 29.630 0.00 0.00 0.00 1.40
324 325 7.952671 TGGCAGTACAACAAATACCAAAAATA 58.047 30.769 0.00 0.00 0.00 1.40
325 326 6.821388 TGGCAGTACAACAAATACCAAAAAT 58.179 32.000 0.00 0.00 0.00 1.82
326 327 6.222038 TGGCAGTACAACAAATACCAAAAA 57.778 33.333 0.00 0.00 0.00 1.94
327 328 5.854010 TGGCAGTACAACAAATACCAAAA 57.146 34.783 0.00 0.00 0.00 2.44
328 329 5.536538 TCATGGCAGTACAACAAATACCAAA 59.463 36.000 0.00 0.00 0.00 3.28
329 330 5.073428 TCATGGCAGTACAACAAATACCAA 58.927 37.500 0.00 0.00 0.00 3.67
330 331 4.657013 TCATGGCAGTACAACAAATACCA 58.343 39.130 0.00 0.00 0.00 3.25
331 332 5.835113 ATCATGGCAGTACAACAAATACC 57.165 39.130 0.00 0.00 0.00 2.73
332 333 6.851609 TCAATCATGGCAGTACAACAAATAC 58.148 36.000 0.00 0.00 0.00 1.89
333 334 7.459795 TTCAATCATGGCAGTACAACAAATA 57.540 32.000 0.00 0.00 0.00 1.40
334 335 5.981088 TCAATCATGGCAGTACAACAAAT 57.019 34.783 0.00 0.00 0.00 2.32
335 336 5.781210 TTCAATCATGGCAGTACAACAAA 57.219 34.783 0.00 0.00 0.00 2.83
336 337 5.781210 TTTCAATCATGGCAGTACAACAA 57.219 34.783 0.00 0.00 0.00 2.83
337 338 5.391843 CGATTTCAATCATGGCAGTACAACA 60.392 40.000 0.00 0.00 35.11 3.33
338 339 5.030295 CGATTTCAATCATGGCAGTACAAC 58.970 41.667 0.00 0.00 35.11 3.32
339 340 4.096231 CCGATTTCAATCATGGCAGTACAA 59.904 41.667 0.00 0.00 35.11 2.41
340 341 3.627123 CCGATTTCAATCATGGCAGTACA 59.373 43.478 0.00 0.00 35.11 2.90
341 342 3.876914 TCCGATTTCAATCATGGCAGTAC 59.123 43.478 0.00 0.00 35.11 2.73
342 343 4.149511 TCCGATTTCAATCATGGCAGTA 57.850 40.909 0.00 0.00 35.11 2.74
343 344 3.003394 TCCGATTTCAATCATGGCAGT 57.997 42.857 0.00 0.00 35.11 4.40
344 345 4.374843 TTTCCGATTTCAATCATGGCAG 57.625 40.909 0.00 0.00 35.11 4.85
345 346 5.341872 AATTTCCGATTTCAATCATGGCA 57.658 34.783 0.00 0.00 35.11 4.92
346 347 6.536224 AGAAAATTTCCGATTTCAATCATGGC 59.464 34.615 1.57 0.00 37.87 4.40
347 348 7.043854 CGAGAAAATTTCCGATTTCAATCATGG 60.044 37.037 1.57 0.00 37.87 3.66
348 349 7.697710 TCGAGAAAATTTCCGATTTCAATCATG 59.302 33.333 12.74 0.00 37.87 3.07
349 350 7.761409 TCGAGAAAATTTCCGATTTCAATCAT 58.239 30.769 12.74 0.00 37.87 2.45
350 351 7.139896 TCGAGAAAATTTCCGATTTCAATCA 57.860 32.000 12.74 0.00 37.87 2.57
351 352 8.447787 TTTCGAGAAAATTTCCGATTTCAATC 57.552 30.769 15.89 0.00 37.87 2.67
352 353 8.810652 TTTTCGAGAAAATTTCCGATTTCAAT 57.189 26.923 15.89 0.00 37.87 2.57
353 354 8.635877 TTTTTCGAGAAAATTTCCGATTTCAA 57.364 26.923 15.89 8.02 39.69 2.69
384 385 4.271816 CTCCCTCCATCGCGGACG 62.272 72.222 6.13 0.00 39.64 4.79
385 386 3.917760 CCTCCCTCCATCGCGGAC 61.918 72.222 6.13 0.00 39.64 4.79
388 389 3.610669 CTCCCTCCCTCCATCGCG 61.611 72.222 0.00 0.00 0.00 5.87
389 390 3.237741 CCTCCCTCCCTCCATCGC 61.238 72.222 0.00 0.00 0.00 4.58
390 391 3.237741 GCCTCCCTCCCTCCATCG 61.238 72.222 0.00 0.00 0.00 3.84
391 392 1.463018 ATGCCTCCCTCCCTCCATC 60.463 63.158 0.00 0.00 0.00 3.51
392 393 1.773391 CATGCCTCCCTCCCTCCAT 60.773 63.158 0.00 0.00 0.00 3.41
393 394 2.367377 CATGCCTCCCTCCCTCCA 60.367 66.667 0.00 0.00 0.00 3.86
394 395 3.174265 CCATGCCTCCCTCCCTCC 61.174 72.222 0.00 0.00 0.00 4.30
395 396 3.883549 GCCATGCCTCCCTCCCTC 61.884 72.222 0.00 0.00 0.00 4.30
413 414 3.508840 CAACCGAATCGCCAGCCC 61.509 66.667 0.00 0.00 0.00 5.19
414 415 4.179579 GCAACCGAATCGCCAGCC 62.180 66.667 0.00 0.00 0.00 4.85
415 416 4.520846 CGCAACCGAATCGCCAGC 62.521 66.667 0.00 0.00 36.29 4.85
416 417 2.813474 TCGCAACCGAATCGCCAG 60.813 61.111 0.00 0.00 41.17 4.85
417 418 3.115892 GTCGCAACCGAATCGCCA 61.116 61.111 0.00 0.00 46.34 5.69
418 419 2.799540 GAGTCGCAACCGAATCGCC 61.800 63.158 0.00 0.00 46.48 5.54
419 420 2.695646 GAGTCGCAACCGAATCGC 59.304 61.111 0.00 0.00 46.48 4.58
449 450 1.741770 GTGATGTGGTGGCCTCGTC 60.742 63.158 3.32 3.84 34.67 4.20
673 711 3.053693 TGGTAGGAGGTGATGAAAATGGG 60.054 47.826 0.00 0.00 0.00 4.00
679 717 3.031736 GCTAGTGGTAGGAGGTGATGAA 58.968 50.000 0.00 0.00 0.00 2.57
683 721 2.145397 CTGCTAGTGGTAGGAGGTGA 57.855 55.000 0.00 0.00 40.25 4.02
690 728 6.049790 GGATTTTTACTCCTGCTAGTGGTAG 58.950 44.000 0.00 0.00 0.00 3.18
691 729 5.104652 GGGATTTTTACTCCTGCTAGTGGTA 60.105 44.000 0.00 0.00 33.05 3.25
692 730 4.324331 GGGATTTTTACTCCTGCTAGTGGT 60.324 45.833 0.00 0.00 33.05 4.16
694 732 4.200092 GGGGATTTTTACTCCTGCTAGTG 58.800 47.826 0.00 0.00 33.05 2.74
703 741 2.453521 GTGGGTGGGGGATTTTTACTC 58.546 52.381 0.00 0.00 0.00 2.59
727 765 3.391665 GAGGCGATGAGGTGGTGGG 62.392 68.421 0.00 0.00 0.00 4.61
780 819 2.497770 GCAATGGCATGTGAGGGC 59.502 61.111 0.00 0.00 40.72 5.19
821 860 4.154347 GAGTGGGAGGAGGCAGCG 62.154 72.222 0.00 0.00 0.00 5.18
822 861 3.791586 GGAGTGGGAGGAGGCAGC 61.792 72.222 0.00 0.00 0.00 5.25
823 862 3.086600 GGGAGTGGGAGGAGGCAG 61.087 72.222 0.00 0.00 0.00 4.85
828 867 2.182858 GAAGGAGGGGAGTGGGAGGA 62.183 65.000 0.00 0.00 0.00 3.71
924 971 1.153745 CAGGGAAAGCTCGTCCGAG 60.154 63.158 12.19 12.19 44.56 4.63
937 984 2.279743 GCATGGGAATGGCAGGGA 59.720 61.111 0.00 0.00 0.00 4.20
965 1017 2.997315 TCAGTCCTCCAGCACCGG 60.997 66.667 0.00 0.00 0.00 5.28
993 1045 0.332632 TCCTCCCCTCCATTGCAAAG 59.667 55.000 1.71 0.00 0.00 2.77
996 1048 2.002977 CCTCCTCCCCTCCATTGCA 61.003 63.158 0.00 0.00 0.00 4.08
1027 1100 4.626081 ACAAACTCCTGCGCCGCT 62.626 61.111 11.67 0.00 0.00 5.52
1035 1111 2.980233 GCGCCAGCACAAACTCCT 60.980 61.111 0.00 0.00 44.35 3.69
1056 1132 2.970974 GCACTTCAAGCTCACCGCC 61.971 63.158 0.00 0.00 40.39 6.13
1058 1134 2.856032 CGCACTTCAAGCTCACCG 59.144 61.111 0.00 0.00 0.00 4.94
1059 1135 2.558313 GCGCACTTCAAGCTCACC 59.442 61.111 0.30 0.00 0.00 4.02
1061 1137 1.227943 AAGGCGCACTTCAAGCTCA 60.228 52.632 10.83 0.00 32.85 4.26
1062 1138 3.660621 AAGGCGCACTTCAAGCTC 58.339 55.556 10.83 0.00 32.85 4.09
1073 1149 3.194308 GCAGCAGAGAGAAGGCGC 61.194 66.667 0.00 0.00 0.00 6.53
1076 1152 0.741574 CAGCAGCAGCAGAGAGAAGG 60.742 60.000 3.17 0.00 45.49 3.46
1080 1156 1.742140 CACCAGCAGCAGCAGAGAG 60.742 63.158 3.17 0.00 45.49 3.20
1082 1158 3.432588 GCACCAGCAGCAGCAGAG 61.433 66.667 3.17 0.00 45.49 3.35
1083 1159 3.896356 GAGCACCAGCAGCAGCAGA 62.896 63.158 3.17 0.00 45.49 4.26
1084 1160 3.432588 GAGCACCAGCAGCAGCAG 61.433 66.667 3.17 0.00 45.49 4.24
1272 1348 2.847234 TTGACCGTGGAGGCCTGT 60.847 61.111 12.00 0.00 46.52 4.00
1322 1416 4.699522 AGTTGCCGTTCCCGCTCC 62.700 66.667 0.00 0.00 0.00 4.70
1323 1417 2.668550 AAGTTGCCGTTCCCGCTC 60.669 61.111 0.00 0.00 0.00 5.03
1324 1418 2.668550 GAAGTTGCCGTTCCCGCT 60.669 61.111 0.00 0.00 0.00 5.52
1325 1419 2.966309 CTGAAGTTGCCGTTCCCGC 61.966 63.158 0.00 0.00 0.00 6.13
1326 1420 2.966309 GCTGAAGTTGCCGTTCCCG 61.966 63.158 0.00 0.00 0.00 5.14
1327 1421 1.896660 TGCTGAAGTTGCCGTTCCC 60.897 57.895 0.00 0.00 0.00 3.97
1335 1429 2.171940 GCGAGCGTGCTGAAGTTG 59.828 61.111 0.00 0.00 0.00 3.16
1383 1477 2.506217 GCCATCGACGCGTTGAGA 60.506 61.111 31.05 22.11 0.00 3.27
1722 1816 1.546834 CGAGGTAGTTGTTCGCTAGC 58.453 55.000 4.06 4.06 37.25 3.42
1728 1822 2.098831 GCCGGCGAGGTAGTTGTTC 61.099 63.158 12.58 0.00 43.70 3.18
2049 2143 3.060020 GAGCGACGACGGGATGGAA 62.060 63.158 9.67 0.00 40.15 3.53
2318 2412 4.170062 CGATGCCCTTGTGCTGCG 62.170 66.667 0.00 0.00 0.00 5.18
2497 2591 0.036875 CTCCCGGCTCTTTTCTTGGT 59.963 55.000 0.00 0.00 0.00 3.67
2511 2605 2.417516 CACCCGATGTAGCTCCCG 59.582 66.667 0.00 0.00 0.00 5.14
2902 2999 2.098831 GCTTACGGGTGAAGGCGAC 61.099 63.158 0.00 0.00 0.00 5.19
2920 3018 1.751927 GCAATGGAGTGGAGCAGGG 60.752 63.158 0.00 0.00 0.00 4.45
2928 3026 4.789012 AACTTGTAATGGCAATGGAGTG 57.211 40.909 0.00 0.00 0.00 3.51
2953 3058 6.327365 AGGTTGAACAATGAAAAAGGGAGAAT 59.673 34.615 0.00 0.00 0.00 2.40
2958 3063 8.675705 AATTAAGGTTGAACAATGAAAAAGGG 57.324 30.769 0.00 0.00 0.00 3.95
2965 3070 6.263392 TCGTGGAAATTAAGGTTGAACAATGA 59.737 34.615 0.00 0.00 0.00 2.57
2967 3072 6.642707 TCGTGGAAATTAAGGTTGAACAAT 57.357 33.333 0.00 0.00 0.00 2.71
2968 3073 6.452494 TTCGTGGAAATTAAGGTTGAACAA 57.548 33.333 0.00 0.00 0.00 2.83
2976 3102 7.095816 GGTTGAACAATTTCGTGGAAATTAAGG 60.096 37.037 14.03 6.93 46.37 2.69
2988 3114 7.062848 GTGCAAATTAAGGTTGAACAATTTCG 58.937 34.615 7.59 0.00 35.00 3.46
2995 3121 9.040939 ACTAATTTGTGCAAATTAAGGTTGAAC 57.959 29.630 22.49 6.02 46.45 3.18
2998 3124 9.691362 ACTACTAATTTGTGCAAATTAAGGTTG 57.309 29.630 22.49 19.95 46.45 3.77
3039 3412 1.979308 TGTCCCGACCCAATTAACTCA 59.021 47.619 0.00 0.00 0.00 3.41
3047 3423 2.448931 ACCCTTGTCCCGACCCAA 60.449 61.111 0.00 0.00 0.00 4.12
3051 3427 0.541863 ATCATGACCCTTGTCCCGAC 59.458 55.000 0.00 0.00 41.01 4.79
3054 3430 2.806945 TGAATCATGACCCTTGTCCC 57.193 50.000 0.00 0.00 41.01 4.46
3061 3437 6.161381 GCCAAATTATGATGAATCATGACCC 58.839 40.000 14.68 0.00 46.34 4.46
3126 3516 7.172342 TGCTGTAAATTTTAGGTACTGATGGT 58.828 34.615 0.00 0.00 41.52 3.55
3128 3518 7.066284 AGCTGCTGTAAATTTTAGGTACTGATG 59.934 37.037 0.00 0.00 41.52 3.07
3131 3521 6.743575 AGCTGCTGTAAATTTTAGGTACTG 57.256 37.500 0.00 0.00 41.52 2.74
3144 3727 8.962884 TGAAAATCTATCAATAGCTGCTGTAA 57.037 30.769 13.43 0.00 0.00 2.41
3147 3730 7.803659 CACATGAAAATCTATCAATAGCTGCTG 59.196 37.037 13.43 0.00 0.00 4.41
3161 3744 5.471556 TGCAATCCAACACATGAAAATCT 57.528 34.783 0.00 0.00 0.00 2.40
3176 3759 3.508840 CGAACCGCCCTGCAATCC 61.509 66.667 0.00 0.00 0.00 3.01
3852 4450 1.205460 AGGAGGGCGTGGGTTGTATT 61.205 55.000 0.00 0.00 0.00 1.89
3855 4453 3.637273 GAGGAGGGCGTGGGTTGT 61.637 66.667 0.00 0.00 0.00 3.32
3877 4478 0.035439 GGAGTTTCAATGGCGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
3886 4487 5.649831 GCAATCAGTAAGGAGGAGTTTCAAT 59.350 40.000 0.00 0.00 0.00 2.57
3910 4511 4.156008 GCTATCCTACAATTTATTGCCGGG 59.844 45.833 2.18 0.00 41.38 5.73
3942 4543 8.006298 ACAGAGAGTAGTAAAAGATCATCCAG 57.994 38.462 0.00 0.00 0.00 3.86
3996 4620 0.392060 AAGGGGTCGGTTAATCACGC 60.392 55.000 0.00 0.00 0.00 5.34
4044 4679 0.468648 TCAGAGCAGATCATGGCAGG 59.531 55.000 0.00 0.00 0.00 4.85
4045 4680 1.139256 AGTCAGAGCAGATCATGGCAG 59.861 52.381 0.00 0.00 0.00 4.85
4046 4681 1.134491 CAGTCAGAGCAGATCATGGCA 60.134 52.381 0.00 0.00 0.00 4.92
4047 4682 1.138464 TCAGTCAGAGCAGATCATGGC 59.862 52.381 0.00 0.00 0.00 4.40
4048 4683 3.538634 TTCAGTCAGAGCAGATCATGG 57.461 47.619 0.00 0.00 0.00 3.66
4049 4684 4.260825 GCATTTCAGTCAGAGCAGATCATG 60.261 45.833 0.00 0.00 0.00 3.07
4050 4685 3.878103 GCATTTCAGTCAGAGCAGATCAT 59.122 43.478 0.00 0.00 0.00 2.45
4051 4686 3.268330 GCATTTCAGTCAGAGCAGATCA 58.732 45.455 0.00 0.00 0.00 2.92
4052 4687 2.613133 GGCATTTCAGTCAGAGCAGATC 59.387 50.000 0.00 0.00 0.00 2.75
4053 4688 2.026542 TGGCATTTCAGTCAGAGCAGAT 60.027 45.455 0.00 0.00 0.00 2.90
4092 4727 0.029834 AGAGCTTGCAACAAACAGCG 59.970 50.000 0.00 0.00 0.00 5.18
4107 4742 3.050275 GGCACCACCGAACAGAGC 61.050 66.667 0.00 0.00 0.00 4.09
4108 4743 1.003355 ATGGCACCACCGAACAGAG 60.003 57.895 0.00 0.00 43.94 3.35
4109 4744 1.302431 CATGGCACCACCGAACAGA 60.302 57.895 0.00 0.00 43.94 3.41
4131 4766 5.772169 AGAGAAAGTTTCTTCCAATTCCAGG 59.228 40.000 18.96 0.00 40.87 4.45
4132 4767 6.890979 AGAGAAAGTTTCTTCCAATTCCAG 57.109 37.500 18.96 0.00 40.87 3.86
4171 4813 6.116126 GCTTCCCTTCTCTAAATCTAAGCAA 58.884 40.000 0.00 0.00 37.38 3.91
4173 4815 4.747605 CGCTTCCCTTCTCTAAATCTAAGC 59.252 45.833 0.00 0.00 34.83 3.09
4174 4816 5.980715 GTCGCTTCCCTTCTCTAAATCTAAG 59.019 44.000 0.00 0.00 0.00 2.18
4252 4894 5.358442 TGCTCTAGACTAGACAATCAACTCC 59.642 44.000 8.17 0.00 0.00 3.85
4268 4910 2.693591 CTCCCGGTTTACATGCTCTAGA 59.306 50.000 0.00 0.00 0.00 2.43
4269 4911 2.803492 GCTCCCGGTTTACATGCTCTAG 60.803 54.545 0.00 0.00 0.00 2.43
4270 4912 1.138266 GCTCCCGGTTTACATGCTCTA 59.862 52.381 0.00 0.00 0.00 2.43
4272 4914 1.095807 GGCTCCCGGTTTACATGCTC 61.096 60.000 0.00 0.00 0.00 4.26
4274 4916 2.469516 CGGCTCCCGGTTTACATGC 61.470 63.158 0.00 0.00 44.15 4.06
4275 4917 3.808036 CGGCTCCCGGTTTACATG 58.192 61.111 0.00 0.00 44.15 3.21
4299 4941 1.728971 CTGATTCGAGGTCAAGTGCAC 59.271 52.381 9.40 9.40 0.00 4.57
4307 4949 4.047822 CACTTAGCATCTGATTCGAGGTC 58.952 47.826 0.00 0.00 0.00 3.85
4388 6717 1.754226 CAGAAGTGAGGGGAGTAGAGC 59.246 57.143 0.00 0.00 0.00 4.09
4399 6728 7.222417 CAGAGCAAATGTACTATCAGAAGTGAG 59.778 40.741 0.00 0.00 35.66 3.51
4403 6732 8.484641 TTTCAGAGCAAATGTACTATCAGAAG 57.515 34.615 0.00 0.00 0.00 2.85
4438 7406 5.361285 TGATCCTAGCTCTAAACTGAAGGAC 59.639 44.000 0.00 0.00 34.64 3.85
4439 7407 5.519808 TGATCCTAGCTCTAAACTGAAGGA 58.480 41.667 0.00 0.00 36.18 3.36
4440 7408 5.362430 ACTGATCCTAGCTCTAAACTGAAGG 59.638 44.000 0.00 0.00 0.00 3.46
4441 7409 6.272318 CACTGATCCTAGCTCTAAACTGAAG 58.728 44.000 0.00 0.00 0.00 3.02
4442 7410 5.127845 CCACTGATCCTAGCTCTAAACTGAA 59.872 44.000 0.00 0.00 0.00 3.02
4449 7417 2.091610 ACTGCCACTGATCCTAGCTCTA 60.092 50.000 0.00 0.00 0.00 2.43
4451 7419 1.118838 ACTGCCACTGATCCTAGCTC 58.881 55.000 0.00 0.00 0.00 4.09
4453 7421 1.757118 TGTACTGCCACTGATCCTAGC 59.243 52.381 0.00 0.00 0.00 3.42
4454 7422 2.760650 TGTGTACTGCCACTGATCCTAG 59.239 50.000 0.00 0.00 36.30 3.02
4457 7425 1.001974 TGTGTGTACTGCCACTGATCC 59.998 52.381 10.69 0.00 36.30 3.36
4458 7426 2.455674 TGTGTGTACTGCCACTGATC 57.544 50.000 10.69 0.00 36.30 2.92
4462 7430 3.207265 TCAAATGTGTGTACTGCCACT 57.793 42.857 10.69 0.00 36.30 4.00
4463 7431 3.119849 GGATCAAATGTGTGTACTGCCAC 60.120 47.826 0.00 0.00 35.86 5.01
4464 7432 3.081061 GGATCAAATGTGTGTACTGCCA 58.919 45.455 0.00 0.00 0.00 4.92
4467 7435 4.514816 TGTGTGGATCAAATGTGTGTACTG 59.485 41.667 0.00 0.00 0.00 2.74
4468 7436 4.713553 TGTGTGGATCAAATGTGTGTACT 58.286 39.130 0.00 0.00 0.00 2.73
4469 7437 5.393124 CATGTGTGGATCAAATGTGTGTAC 58.607 41.667 0.00 0.00 37.09 2.90
4565 7562 4.518278 ACATGTATTCCTGCCATACCAA 57.482 40.909 0.00 0.00 0.00 3.67
4601 7598 3.508793 ACCACAAATGCTGAAGATTCCTG 59.491 43.478 0.00 0.00 0.00 3.86
4603 7600 5.450965 CCATACCACAAATGCTGAAGATTCC 60.451 44.000 0.00 0.00 0.00 3.01
4627 7624 0.250295 TCTAGTTGTGCCACCACTGC 60.250 55.000 11.55 0.00 42.54 4.40
4635 7677 3.686726 CCTTGATCTGTTCTAGTTGTGCC 59.313 47.826 0.00 0.00 0.00 5.01
4637 7679 4.692625 CCACCTTGATCTGTTCTAGTTGTG 59.307 45.833 0.00 0.00 0.00 3.33
4646 7688 1.004044 CTCCAGCCACCTTGATCTGTT 59.996 52.381 0.00 0.00 0.00 3.16
4649 7691 0.548682 ACCTCCAGCCACCTTGATCT 60.549 55.000 0.00 0.00 0.00 2.75
4650 7692 0.393537 CACCTCCAGCCACCTTGATC 60.394 60.000 0.00 0.00 0.00 2.92
4651 7693 1.687612 CACCTCCAGCCACCTTGAT 59.312 57.895 0.00 0.00 0.00 2.57
4652 7694 2.528818 CCACCTCCAGCCACCTTGA 61.529 63.158 0.00 0.00 0.00 3.02
4653 7695 2.034687 CCACCTCCAGCCACCTTG 59.965 66.667 0.00 0.00 0.00 3.61
4654 7696 2.121963 TCCACCTCCAGCCACCTT 60.122 61.111 0.00 0.00 0.00 3.50
4655 7697 2.930562 GTCCACCTCCAGCCACCT 60.931 66.667 0.00 0.00 0.00 4.00
4658 7700 2.204034 TCTGTCCACCTCCAGCCA 59.796 61.111 0.00 0.00 0.00 4.75
4660 7702 1.294780 CTGTCTGTCCACCTCCAGC 59.705 63.158 0.00 0.00 0.00 4.85
4661 7703 1.978473 CCTGTCTGTCCACCTCCAG 59.022 63.158 0.00 0.00 0.00 3.86
4662 7704 2.217038 GCCTGTCTGTCCACCTCCA 61.217 63.158 0.00 0.00 0.00 3.86
4665 7707 1.261238 GCTAGCCTGTCTGTCCACCT 61.261 60.000 2.29 0.00 0.00 4.00
4667 7709 0.321671 TTGCTAGCCTGTCTGTCCAC 59.678 55.000 13.29 0.00 0.00 4.02
4668 7710 1.055849 TTTGCTAGCCTGTCTGTCCA 58.944 50.000 13.29 0.00 0.00 4.02
4669 7711 2.093235 AGATTTGCTAGCCTGTCTGTCC 60.093 50.000 13.29 0.00 0.00 4.02
4670 7712 3.118811 AGAGATTTGCTAGCCTGTCTGTC 60.119 47.826 13.29 0.50 0.00 3.51
4671 7713 2.836981 AGAGATTTGCTAGCCTGTCTGT 59.163 45.455 13.29 8.10 0.00 3.41
4672 7714 3.196463 CAGAGATTTGCTAGCCTGTCTG 58.804 50.000 13.29 15.35 0.00 3.51
4673 7715 2.419851 GCAGAGATTTGCTAGCCTGTCT 60.420 50.000 13.29 12.09 40.89 3.41
4768 7810 2.611292 GTGAGATGTGGTAAGCTGATGC 59.389 50.000 0.00 0.00 40.05 3.91
4821 7863 3.067106 GTCCACACGTCAGATTTGTCAT 58.933 45.455 0.00 0.00 0.00 3.06
4832 7874 3.737266 TGAAATACTTTCGTCCACACGTC 59.263 43.478 0.00 0.00 46.76 4.34
4835 7877 5.412526 TTGTGAAATACTTTCGTCCACAC 57.587 39.130 0.00 0.00 42.55 3.82
4837 7879 5.907391 CAGTTTGTGAAATACTTTCGTCCAC 59.093 40.000 0.00 0.00 42.55 4.02
4883 7925 0.886490 CAGAAAAGGGTGAGCTGCGT 60.886 55.000 0.00 0.00 0.00 5.24
4884 7926 0.886490 ACAGAAAAGGGTGAGCTGCG 60.886 55.000 0.00 0.00 0.00 5.18
4888 7932 1.079503 CGCTACAGAAAAGGGTGAGC 58.920 55.000 0.00 0.00 0.00 4.26
4900 7944 2.202623 GTCTGCCGGACGCTACAG 60.203 66.667 5.05 0.96 38.78 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.