Multiple sequence alignment - TraesCS7B01G440000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G440000 chr7B 100.000 5285 0 0 1 5285 705258375 705253091 0.000000e+00 9760.0
1 TraesCS7B01G440000 chr7A 90.856 4648 263 74 687 5285 705691282 705686748 0.000000e+00 6080.0
2 TraesCS7B01G440000 chr7A 91.929 731 47 6 4549 5277 34789057 34788337 0.000000e+00 1013.0
3 TraesCS7B01G440000 chr7A 87.281 629 73 6 2410 3034 2542756 2543381 0.000000e+00 712.0
4 TraesCS7B01G440000 chr7A 87.281 629 73 6 2410 3034 67565436 67566061 0.000000e+00 712.0
5 TraesCS7B01G440000 chr7A 95.556 90 4 0 4490 4579 34789151 34789062 1.530000e-30 145.0
6 TraesCS7B01G440000 chr7D 92.710 3553 163 40 719 4251 613874248 613870772 0.000000e+00 5038.0
7 TraesCS7B01G440000 chr7D 90.541 962 60 17 4341 5285 613870578 613869631 0.000000e+00 1243.0
8 TraesCS7B01G440000 chr7D 86.691 278 33 3 61 334 613875216 613874939 6.650000e-79 305.0
9 TraesCS7B01G440000 chr3B 87.500 632 71 6 2410 3037 492109351 492108724 0.000000e+00 723.0
10 TraesCS7B01G440000 chr3B 83.537 164 21 6 3 161 452679816 452679978 1.190000e-31 148.0
11 TraesCS7B01G440000 chr3B 83.007 153 23 3 3 153 189918238 189918389 9.230000e-28 135.0
12 TraesCS7B01G440000 chr4A 87.184 632 74 6 2410 3037 12666817 12666189 0.000000e+00 712.0
13 TraesCS7B01G440000 chr1A 87.184 632 74 6 2410 3037 502835091 502834463 0.000000e+00 712.0
14 TraesCS7B01G440000 chr1A 82.609 483 58 17 1719 2198 362620539 362620998 2.290000e-108 403.0
15 TraesCS7B01G440000 chr1A 100.000 28 0 0 4376 4403 98249526 98249499 1.000000e-02 52.8
16 TraesCS7B01G440000 chr3A 86.867 632 74 7 2410 3037 708546922 708546296 0.000000e+00 699.0
17 TraesCS7B01G440000 chr6B 86.256 633 79 7 2406 3034 125687430 125688058 0.000000e+00 680.0
18 TraesCS7B01G440000 chr6B 86.364 132 17 1 24 155 25273439 25273309 5.520000e-30 143.0
19 TraesCS7B01G440000 chr6A 84.202 614 79 10 1719 2321 36490616 36491222 9.870000e-162 580.0
20 TraesCS7B01G440000 chr6A 100.000 29 0 0 4378 4406 182304830 182304802 3.000000e-03 54.7
21 TraesCS7B01G440000 chr2D 83.173 624 68 14 1968 2576 429498906 429499507 2.170000e-148 536.0
22 TraesCS7B01G440000 chr6D 83.387 313 49 3 3040 3350 331239349 331239660 2.410000e-73 287.0
23 TraesCS7B01G440000 chr6D 90.076 131 13 0 3374 3504 331239656 331239786 2.530000e-38 171.0
24 TraesCS7B01G440000 chr3D 95.238 105 5 0 53 157 132273787 132273683 3.270000e-37 167.0
25 TraesCS7B01G440000 chr5D 87.075 147 18 1 3 148 531993198 531993052 1.180000e-36 165.0
26 TraesCS7B01G440000 chr5A 83.750 160 24 2 4 161 502215828 502215669 3.300000e-32 150.0
27 TraesCS7B01G440000 chr4B 82.500 160 24 2 3 158 24775559 24775400 2.570000e-28 137.0
28 TraesCS7B01G440000 chr4B 81.529 157 28 1 3 158 4541310 4541154 1.540000e-25 128.0
29 TraesCS7B01G440000 chr4B 100.000 29 0 0 4375 4403 127852190 127852218 3.000000e-03 54.7
30 TraesCS7B01G440000 chr5B 90.476 42 3 1 4369 4409 554791396 554791437 3.000000e-03 54.7
31 TraesCS7B01G440000 chr2B 100.000 29 0 0 4376 4404 529598692 529598720 3.000000e-03 54.7
32 TraesCS7B01G440000 chrUn 100.000 28 0 0 4376 4403 24265359 24265332 1.000000e-02 52.8
33 TraesCS7B01G440000 chr4D 100.000 28 0 0 4376 4403 484399923 484399896 1.000000e-02 52.8
34 TraesCS7B01G440000 chr1D 100.000 28 0 0 4376 4403 201833346 201833319 1.000000e-02 52.8
35 TraesCS7B01G440000 chr1B 94.118 34 2 0 4370 4403 258729873 258729906 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G440000 chr7B 705253091 705258375 5284 True 9760.000000 9760 100.000000 1 5285 1 chr7B.!!$R1 5284
1 TraesCS7B01G440000 chr7A 705686748 705691282 4534 True 6080.000000 6080 90.856000 687 5285 1 chr7A.!!$R1 4598
2 TraesCS7B01G440000 chr7A 2542756 2543381 625 False 712.000000 712 87.281000 2410 3034 1 chr7A.!!$F1 624
3 TraesCS7B01G440000 chr7A 67565436 67566061 625 False 712.000000 712 87.281000 2410 3034 1 chr7A.!!$F2 624
4 TraesCS7B01G440000 chr7A 34788337 34789151 814 True 579.000000 1013 93.742500 4490 5277 2 chr7A.!!$R2 787
5 TraesCS7B01G440000 chr7D 613869631 613875216 5585 True 2195.333333 5038 89.980667 61 5285 3 chr7D.!!$R1 5224
6 TraesCS7B01G440000 chr3B 492108724 492109351 627 True 723.000000 723 87.500000 2410 3037 1 chr3B.!!$R1 627
7 TraesCS7B01G440000 chr4A 12666189 12666817 628 True 712.000000 712 87.184000 2410 3037 1 chr4A.!!$R1 627
8 TraesCS7B01G440000 chr1A 502834463 502835091 628 True 712.000000 712 87.184000 2410 3037 1 chr1A.!!$R2 627
9 TraesCS7B01G440000 chr3A 708546296 708546922 626 True 699.000000 699 86.867000 2410 3037 1 chr3A.!!$R1 627
10 TraesCS7B01G440000 chr6B 125687430 125688058 628 False 680.000000 680 86.256000 2406 3034 1 chr6B.!!$F1 628
11 TraesCS7B01G440000 chr6A 36490616 36491222 606 False 580.000000 580 84.202000 1719 2321 1 chr6A.!!$F1 602
12 TraesCS7B01G440000 chr2D 429498906 429499507 601 False 536.000000 536 83.173000 1968 2576 1 chr2D.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 666 0.028747 TGGGGTGATGGATGGAGGAT 60.029 55.0 0.00 0.0 0.0 3.24 F
485 750 0.033503 GGGAGGGGTTGGTGGTTATG 60.034 60.0 0.00 0.0 0.0 1.90 F
1400 1818 0.174162 GCCTGAATTTTGCGCATCCT 59.826 50.0 12.75 0.0 0.0 3.24 F
2684 3137 0.184451 ATTACATGGCCCCAGAGCAG 59.816 55.0 0.00 0.0 0.0 4.24 F
3672 4131 0.178992 TTGTGACCTTCCCTGGCAAG 60.179 55.0 0.00 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1776 0.036483 TTCAGGCGCAGATACAAGCA 60.036 50.0 10.83 0.00 0.00 3.91 R
1830 2248 0.666913 CCTCGTGGTACCGGTCATAG 59.333 60.0 12.40 6.02 0.00 2.23 R
3376 3835 0.714180 TCCCTGAGCCTTACCCAGTA 59.286 55.0 0.00 0.00 0.00 2.74 R
3846 4305 0.108804 TGATGCTCTTCCCGACGAAC 60.109 55.0 0.00 0.00 0.00 3.95 R
4969 5655 0.396695 TCCTCACGGGGTATCAGGAC 60.397 60.0 0.00 0.00 35.33 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.279120 GCAGGGAGAGCGATGACG 60.279 66.667 0.00 0.00 42.93 4.35
18 19 2.415010 CAGGGAGAGCGATGACGG 59.585 66.667 0.00 0.00 40.15 4.79
19 20 3.532155 AGGGAGAGCGATGACGGC 61.532 66.667 0.00 0.00 40.15 5.68
20 21 3.532155 GGGAGAGCGATGACGGCT 61.532 66.667 0.00 0.00 40.15 5.52
21 22 2.194212 GGGAGAGCGATGACGGCTA 61.194 63.158 0.00 0.00 40.15 3.93
22 23 1.008309 GGAGAGCGATGACGGCTAC 60.008 63.158 0.00 0.00 40.15 3.58
35 36 3.081993 GCTACGCGCCTTGAGTTC 58.918 61.111 5.73 0.00 0.00 3.01
36 37 2.789203 GCTACGCGCCTTGAGTTCG 61.789 63.158 5.73 0.00 0.00 3.95
37 38 2.789203 CTACGCGCCTTGAGTTCGC 61.789 63.158 5.73 0.00 44.76 4.70
38 39 3.277211 TACGCGCCTTGAGTTCGCT 62.277 57.895 5.73 0.00 45.87 4.93
39 40 3.843240 CGCGCCTTGAGTTCGCTC 61.843 66.667 0.00 0.00 45.87 5.03
40 41 3.491652 GCGCCTTGAGTTCGCTCC 61.492 66.667 0.00 0.00 44.79 4.70
41 42 2.048222 CGCCTTGAGTTCGCTCCA 60.048 61.111 0.00 0.00 43.45 3.86
42 43 1.667830 CGCCTTGAGTTCGCTCCAA 60.668 57.895 0.00 0.00 43.45 3.53
43 44 1.021390 CGCCTTGAGTTCGCTCCAAT 61.021 55.000 0.00 0.00 43.45 3.16
44 45 0.449388 GCCTTGAGTTCGCTCCAATG 59.551 55.000 0.00 0.00 43.45 2.82
45 46 1.945819 GCCTTGAGTTCGCTCCAATGA 60.946 52.381 0.00 0.00 43.45 2.57
46 47 2.636830 CCTTGAGTTCGCTCCAATGAT 58.363 47.619 0.00 0.00 43.45 2.45
47 48 3.012518 CCTTGAGTTCGCTCCAATGATT 58.987 45.455 0.00 0.00 43.45 2.57
48 49 4.191544 CCTTGAGTTCGCTCCAATGATTA 58.808 43.478 0.00 0.00 43.45 1.75
49 50 4.818546 CCTTGAGTTCGCTCCAATGATTAT 59.181 41.667 0.00 0.00 43.45 1.28
50 51 5.991606 CCTTGAGTTCGCTCCAATGATTATA 59.008 40.000 0.00 0.00 43.45 0.98
51 52 6.483307 CCTTGAGTTCGCTCCAATGATTATAA 59.517 38.462 0.00 0.00 43.45 0.98
52 53 7.173907 CCTTGAGTTCGCTCCAATGATTATAAT 59.826 37.037 0.00 0.00 43.45 1.28
53 54 7.658179 TGAGTTCGCTCCAATGATTATAATC 57.342 36.000 17.09 17.09 43.45 1.75
54 55 6.366061 TGAGTTCGCTCCAATGATTATAATCG 59.634 38.462 18.35 6.75 43.45 3.34
55 56 6.223852 AGTTCGCTCCAATGATTATAATCGT 58.776 36.000 18.35 15.98 38.26 3.73
56 57 6.366332 AGTTCGCTCCAATGATTATAATCGTC 59.634 38.462 18.36 6.87 38.26 4.20
57 58 4.857037 TCGCTCCAATGATTATAATCGTCG 59.143 41.667 18.36 16.34 38.26 5.12
58 59 4.490959 CGCTCCAATGATTATAATCGTCGC 60.491 45.833 18.36 16.16 38.26 5.19
59 60 4.627467 GCTCCAATGATTATAATCGTCGCT 59.373 41.667 18.36 3.12 38.26 4.93
85 86 2.490991 GTCCACAGACCTGGTTGTAAC 58.509 52.381 0.00 6.08 37.00 2.50
115 116 3.454812 ACCTCTGGTGTTCTTTGTACTGT 59.545 43.478 0.00 0.00 32.98 3.55
129 130 6.870439 TCTTTGTACTGTCATGACTGAAGATG 59.130 38.462 31.99 18.76 34.80 2.90
134 135 8.193438 TGTACTGTCATGACTGAAGATGAATAG 58.807 37.037 31.99 16.93 34.80 1.73
138 139 8.658499 TGTCATGACTGAAGATGAATAGATTG 57.342 34.615 25.55 0.00 31.85 2.67
139 140 8.480501 TGTCATGACTGAAGATGAATAGATTGA 58.519 33.333 25.55 0.00 31.85 2.57
182 186 6.014584 ACAATCTAAAGGAAACAAACCCCATC 60.015 38.462 0.00 0.00 0.00 3.51
202 206 0.678048 GAACATGCCCAGTCTCCACC 60.678 60.000 0.00 0.00 0.00 4.61
204 208 3.017581 ATGCCCAGTCTCCACCCC 61.018 66.667 0.00 0.00 0.00 4.95
208 212 2.301738 CCCAGTCTCCACCCCTTCC 61.302 68.421 0.00 0.00 0.00 3.46
229 233 7.611855 CCTTCCTTCTTTATTCTCTTGGCTTTA 59.388 37.037 0.00 0.00 0.00 1.85
234 238 7.213178 TCTTTATTCTCTTGGCTTTATCCCT 57.787 36.000 0.00 0.00 0.00 4.20
237 241 8.747538 TTTATTCTCTTGGCTTTATCCCTTAC 57.252 34.615 0.00 0.00 0.00 2.34
244 248 2.210961 GCTTTATCCCTTACCAGACGC 58.789 52.381 0.00 0.00 0.00 5.19
248 252 0.389391 ATCCCTTACCAGACGCATCG 59.611 55.000 0.00 0.00 0.00 3.84
263 267 0.388659 CATCGCCTCCTCTTCCTCTG 59.611 60.000 0.00 0.00 0.00 3.35
275 279 4.376146 CTCTTCCTCTGAAAATCCCGATC 58.624 47.826 0.00 0.00 0.00 3.69
276 280 3.774766 TCTTCCTCTGAAAATCCCGATCA 59.225 43.478 0.00 0.00 0.00 2.92
282 286 5.221126 CCTCTGAAAATCCCGATCAAAATCC 60.221 44.000 0.00 0.00 0.00 3.01
285 289 4.142491 TGAAAATCCCGATCAAAATCCACG 60.142 41.667 0.00 0.00 0.00 4.94
293 297 2.465860 TCAAAATCCACGTCACCGAT 57.534 45.000 0.00 0.00 37.88 4.18
324 328 2.132402 CGCAACGCAACCATTGTTC 58.868 52.632 0.00 0.00 30.42 3.18
325 329 0.317770 CGCAACGCAACCATTGTTCT 60.318 50.000 0.00 0.00 30.42 3.01
327 331 1.786579 GCAACGCAACCATTGTTCTTC 59.213 47.619 0.00 0.00 30.42 2.87
328 332 2.797792 GCAACGCAACCATTGTTCTTCA 60.798 45.455 0.00 0.00 30.42 3.02
329 333 3.641648 CAACGCAACCATTGTTCTTCAT 58.358 40.909 0.00 0.00 30.42 2.57
331 335 4.685169 ACGCAACCATTGTTCTTCATAG 57.315 40.909 0.00 0.00 30.42 2.23
332 336 4.323417 ACGCAACCATTGTTCTTCATAGA 58.677 39.130 0.00 0.00 30.42 1.98
333 337 4.393062 ACGCAACCATTGTTCTTCATAGAG 59.607 41.667 0.00 0.00 30.42 2.43
334 338 4.631377 CGCAACCATTGTTCTTCATAGAGA 59.369 41.667 0.00 0.00 30.42 3.10
335 339 5.446473 CGCAACCATTGTTCTTCATAGAGAC 60.446 44.000 0.00 0.00 30.42 3.36
336 340 5.163713 GCAACCATTGTTCTTCATAGAGACC 60.164 44.000 0.00 0.00 30.42 3.85
337 341 4.759782 ACCATTGTTCTTCATAGAGACCG 58.240 43.478 0.00 0.00 0.00 4.79
338 342 4.223032 ACCATTGTTCTTCATAGAGACCGT 59.777 41.667 0.00 0.00 0.00 4.83
339 343 4.568359 CCATTGTTCTTCATAGAGACCGTG 59.432 45.833 0.00 0.00 0.00 4.94
340 344 3.868757 TGTTCTTCATAGAGACCGTGG 57.131 47.619 0.00 0.00 0.00 4.94
341 345 3.162666 TGTTCTTCATAGAGACCGTGGT 58.837 45.455 0.00 0.00 0.00 4.16
342 346 4.338012 TGTTCTTCATAGAGACCGTGGTA 58.662 43.478 0.00 0.00 0.00 3.25
343 347 4.398358 TGTTCTTCATAGAGACCGTGGTAG 59.602 45.833 0.00 0.00 0.00 3.18
344 348 3.552875 TCTTCATAGAGACCGTGGTAGG 58.447 50.000 0.00 0.00 37.30 3.18
345 349 2.359981 TCATAGAGACCGTGGTAGGG 57.640 55.000 0.00 0.00 35.02 3.53
346 350 1.133575 TCATAGAGACCGTGGTAGGGG 60.134 57.143 0.00 0.00 35.02 4.79
347 351 1.133575 CATAGAGACCGTGGTAGGGGA 60.134 57.143 0.00 0.00 35.02 4.81
348 352 1.002069 TAGAGACCGTGGTAGGGGAA 58.998 55.000 0.00 0.00 35.02 3.97
349 353 0.324460 AGAGACCGTGGTAGGGGAAG 60.324 60.000 0.00 0.00 35.02 3.46
350 354 0.324091 GAGACCGTGGTAGGGGAAGA 60.324 60.000 0.00 0.00 35.02 2.87
351 355 0.324460 AGACCGTGGTAGGGGAAGAG 60.324 60.000 0.00 0.00 35.02 2.85
352 356 1.305887 ACCGTGGTAGGGGAAGAGG 60.306 63.158 0.00 0.00 35.02 3.69
353 357 1.305887 CCGTGGTAGGGGAAGAGGT 60.306 63.158 0.00 0.00 0.00 3.85
354 358 1.614241 CCGTGGTAGGGGAAGAGGTG 61.614 65.000 0.00 0.00 0.00 4.00
355 359 1.614241 CGTGGTAGGGGAAGAGGTGG 61.614 65.000 0.00 0.00 0.00 4.61
356 360 0.546988 GTGGTAGGGGAAGAGGTGGT 60.547 60.000 0.00 0.00 0.00 4.16
357 361 0.252558 TGGTAGGGGAAGAGGTGGTC 60.253 60.000 0.00 0.00 0.00 4.02
358 362 1.328430 GGTAGGGGAAGAGGTGGTCG 61.328 65.000 0.00 0.00 0.00 4.79
359 363 0.324091 GTAGGGGAAGAGGTGGTCGA 60.324 60.000 0.00 0.00 0.00 4.20
360 364 0.033405 TAGGGGAAGAGGTGGTCGAG 60.033 60.000 0.00 0.00 0.00 4.04
361 365 2.359967 GGGGAAGAGGTGGTCGAGG 61.360 68.421 0.00 0.00 0.00 4.63
362 366 2.579738 GGAAGAGGTGGTCGAGGC 59.420 66.667 0.00 0.00 0.00 4.70
363 367 2.283529 GGAAGAGGTGGTCGAGGCA 61.284 63.158 0.00 0.00 0.00 4.75
364 368 1.216710 GAAGAGGTGGTCGAGGCAG 59.783 63.158 0.00 0.00 0.00 4.85
365 369 2.844072 GAAGAGGTGGTCGAGGCAGC 62.844 65.000 0.00 0.00 0.00 5.25
366 370 4.803426 GAGGTGGTCGAGGCAGCG 62.803 72.222 0.00 0.00 0.00 5.18
401 666 0.028747 TGGGGTGATGGATGGAGGAT 60.029 55.000 0.00 0.00 0.00 3.24
408 673 1.350351 GATGGATGGAGGATGTGAGGG 59.650 57.143 0.00 0.00 0.00 4.30
414 679 1.630369 TGGAGGATGTGAGGGTTGAAG 59.370 52.381 0.00 0.00 0.00 3.02
433 698 0.733909 GAAGAGGCAATGGCAAACGC 60.734 55.000 10.05 0.00 43.71 4.84
438 703 2.381967 GCAATGGCAAACGCGCAAT 61.382 52.632 5.73 0.00 40.72 3.56
441 706 0.319383 AATGGCAAACGCGCAATCAA 60.319 45.000 5.73 0.00 0.00 2.57
451 716 0.248215 GCGCAATCAACCAGGATTCG 60.248 55.000 0.30 0.00 35.37 3.34
455 720 2.710377 CAATCAACCAGGATTCGACCA 58.290 47.619 0.00 0.00 35.37 4.02
458 723 0.321564 CAACCAGGATTCGACCAGCA 60.322 55.000 0.00 0.00 0.00 4.41
461 726 0.036010 CCAGGATTCGACCAGCAGTT 60.036 55.000 0.00 0.00 0.00 3.16
463 728 0.674895 AGGATTCGACCAGCAGTTGC 60.675 55.000 0.00 0.00 42.49 4.17
482 747 3.576259 CGGGAGGGGTTGGTGGTT 61.576 66.667 0.00 0.00 0.00 3.67
483 748 2.225596 CGGGAGGGGTTGGTGGTTA 61.226 63.158 0.00 0.00 0.00 2.85
484 749 1.568118 CGGGAGGGGTTGGTGGTTAT 61.568 60.000 0.00 0.00 0.00 1.89
485 750 0.033503 GGGAGGGGTTGGTGGTTATG 60.034 60.000 0.00 0.00 0.00 1.90
486 751 0.683179 GGAGGGGTTGGTGGTTATGC 60.683 60.000 0.00 0.00 0.00 3.14
487 752 1.001393 AGGGGTTGGTGGTTATGCG 60.001 57.895 0.00 0.00 0.00 4.73
488 753 2.049767 GGGGTTGGTGGTTATGCGG 61.050 63.158 0.00 0.00 0.00 5.69
489 754 2.706834 GGGTTGGTGGTTATGCGGC 61.707 63.158 0.00 0.00 0.00 6.53
490 755 1.974343 GGTTGGTGGTTATGCGGCA 60.974 57.895 4.58 4.58 0.00 5.69
493 765 1.247419 TTGGTGGTTATGCGGCAAGG 61.247 55.000 6.82 0.00 0.00 3.61
518 790 1.802365 GGCGAACGTGTAGGAAAATGT 59.198 47.619 0.00 0.00 0.00 2.71
519 791 2.412325 GGCGAACGTGTAGGAAAATGTG 60.412 50.000 0.00 0.00 0.00 3.21
520 792 2.834689 CGAACGTGTAGGAAAATGTGC 58.165 47.619 0.00 0.00 0.00 4.57
521 793 2.412325 CGAACGTGTAGGAAAATGTGCC 60.412 50.000 0.00 0.00 0.00 5.01
522 794 2.264005 ACGTGTAGGAAAATGTGCCA 57.736 45.000 0.00 0.00 0.00 4.92
523 795 2.790433 ACGTGTAGGAAAATGTGCCAT 58.210 42.857 0.00 0.00 0.00 4.40
524 796 3.945346 ACGTGTAGGAAAATGTGCCATA 58.055 40.909 0.00 0.00 0.00 2.74
525 797 4.523083 ACGTGTAGGAAAATGTGCCATAT 58.477 39.130 0.00 0.00 0.00 1.78
526 798 4.335315 ACGTGTAGGAAAATGTGCCATATG 59.665 41.667 0.00 0.00 0.00 1.78
527 799 4.610945 GTGTAGGAAAATGTGCCATATGC 58.389 43.478 0.00 0.00 41.77 3.14
528 800 4.339247 GTGTAGGAAAATGTGCCATATGCT 59.661 41.667 0.00 0.00 42.00 3.79
529 801 4.338964 TGTAGGAAAATGTGCCATATGCTG 59.661 41.667 0.00 0.00 42.00 4.41
545 817 6.489700 CCATATGCTGGTATATGTGGTTGAAA 59.510 38.462 14.31 0.00 40.49 2.69
564 836 8.997621 GTTGAAACCATACACACTATCTAGAA 57.002 34.615 0.00 0.00 0.00 2.10
570 842 7.126733 ACCATACACACTATCTAGAAGAACCT 58.873 38.462 0.00 0.00 0.00 3.50
573 845 9.562408 CATACACACTATCTAGAAGAACCTAGA 57.438 37.037 0.00 0.00 46.29 2.43
591 863 7.283625 ACCTAGAGACTATATCTGTTGCAAG 57.716 40.000 0.00 0.00 38.00 4.01
605 877 8.774890 ATCTGTTGCAAGCTCTCATATATAAG 57.225 34.615 0.00 0.00 0.00 1.73
606 878 7.730084 TCTGTTGCAAGCTCTCATATATAAGT 58.270 34.615 0.00 0.00 0.00 2.24
607 879 8.206867 TCTGTTGCAAGCTCTCATATATAAGTT 58.793 33.333 0.00 0.00 0.00 2.66
608 880 8.370493 TGTTGCAAGCTCTCATATATAAGTTC 57.630 34.615 0.00 0.00 0.00 3.01
609 881 7.169813 TGTTGCAAGCTCTCATATATAAGTTCG 59.830 37.037 0.00 0.00 0.00 3.95
610 882 6.749139 TGCAAGCTCTCATATATAAGTTCGT 58.251 36.000 0.00 0.00 0.00 3.85
611 883 7.210174 TGCAAGCTCTCATATATAAGTTCGTT 58.790 34.615 0.00 0.00 0.00 3.85
612 884 7.710907 TGCAAGCTCTCATATATAAGTTCGTTT 59.289 33.333 0.00 0.00 0.00 3.60
613 885 8.217778 GCAAGCTCTCATATATAAGTTCGTTTC 58.782 37.037 0.00 0.00 0.00 2.78
614 886 9.249457 CAAGCTCTCATATATAAGTTCGTTTCA 57.751 33.333 0.00 0.00 0.00 2.69
615 887 9.988815 AAGCTCTCATATATAAGTTCGTTTCAT 57.011 29.630 0.00 0.00 0.00 2.57
616 888 9.632807 AGCTCTCATATATAAGTTCGTTTCATC 57.367 33.333 0.00 0.00 0.00 2.92
617 889 9.632807 GCTCTCATATATAAGTTCGTTTCATCT 57.367 33.333 0.00 0.00 0.00 2.90
656 928 7.070571 AGGTTCATTTCATTCAAACCCACTTAA 59.929 33.333 0.00 0.00 40.18 1.85
657 929 7.713073 GGTTCATTTCATTCAAACCCACTTAAA 59.287 33.333 0.00 0.00 34.58 1.52
658 930 9.103861 GTTCATTTCATTCAAACCCACTTAAAA 57.896 29.630 0.00 0.00 0.00 1.52
659 931 8.885494 TCATTTCATTCAAACCCACTTAAAAG 57.115 30.769 0.00 0.00 0.00 2.27
660 932 7.930865 TCATTTCATTCAAACCCACTTAAAAGG 59.069 33.333 0.00 0.00 0.00 3.11
661 933 7.425224 TTTCATTCAAACCCACTTAAAAGGA 57.575 32.000 0.00 0.00 0.00 3.36
662 934 7.425224 TTCATTCAAACCCACTTAAAAGGAA 57.575 32.000 0.00 0.00 0.00 3.36
663 935 7.610580 TCATTCAAACCCACTTAAAAGGAAT 57.389 32.000 0.00 0.00 0.00 3.01
664 936 8.028652 TCATTCAAACCCACTTAAAAGGAATT 57.971 30.769 0.00 0.00 0.00 2.17
665 937 9.148879 TCATTCAAACCCACTTAAAAGGAATTA 57.851 29.630 0.00 0.00 0.00 1.40
666 938 9.942850 CATTCAAACCCACTTAAAAGGAATTAT 57.057 29.630 0.00 0.00 0.00 1.28
668 940 9.990360 TTCAAACCCACTTAAAAGGAATTATTC 57.010 29.630 0.00 0.00 0.00 1.75
889 1271 4.785453 CCAAGCACGCTCCCCCTC 62.785 72.222 0.00 0.00 0.00 4.30
890 1272 4.785453 CAAGCACGCTCCCCCTCC 62.785 72.222 0.00 0.00 0.00 4.30
917 1299 1.045911 CCTCTTTCCCCTCCTCCTCG 61.046 65.000 0.00 0.00 0.00 4.63
918 1300 1.681486 CTCTTTCCCCTCCTCCTCGC 61.681 65.000 0.00 0.00 0.00 5.03
919 1301 1.990060 CTTTCCCCTCCTCCTCGCA 60.990 63.158 0.00 0.00 0.00 5.10
920 1302 2.245438 CTTTCCCCTCCTCCTCGCAC 62.245 65.000 0.00 0.00 0.00 5.34
923 1305 3.775654 CCCTCCTCCTCGCACCAC 61.776 72.222 0.00 0.00 0.00 4.16
947 1339 1.302832 CAACCTCCAGTGCAGGTCC 60.303 63.158 6.11 0.00 44.03 4.46
983 1375 0.179108 CGAATCCACCTCTCCGGAAC 60.179 60.000 5.23 0.00 34.22 3.62
991 1383 1.608717 CCTCTCCGGAACCACTCCAG 61.609 65.000 5.23 0.00 45.74 3.86
992 1384 0.900647 CTCTCCGGAACCACTCCAGT 60.901 60.000 5.23 0.00 45.74 4.00
993 1385 0.406750 TCTCCGGAACCACTCCAGTA 59.593 55.000 5.23 0.00 45.74 2.74
994 1386 0.818296 CTCCGGAACCACTCCAGTAG 59.182 60.000 5.23 0.00 45.74 2.57
995 1387 1.218316 CCGGAACCACTCCAGTAGC 59.782 63.158 0.00 0.00 45.74 3.58
996 1388 1.218316 CGGAACCACTCCAGTAGCC 59.782 63.158 0.00 0.00 45.74 3.93
1061 1454 1.691196 TCTTCACCAAGCAAACCCAG 58.309 50.000 0.00 0.00 0.00 4.45
1077 1470 2.022129 CAGTTCGCCGACACCACTC 61.022 63.158 0.00 0.00 0.00 3.51
1101 1494 1.414158 TTCAGATTAGAGGCGGGGAG 58.586 55.000 0.00 0.00 0.00 4.30
1102 1495 0.470080 TCAGATTAGAGGCGGGGAGG 60.470 60.000 0.00 0.00 0.00 4.30
1103 1496 1.152226 AGATTAGAGGCGGGGAGGG 60.152 63.158 0.00 0.00 0.00 4.30
1104 1497 2.122369 ATTAGAGGCGGGGAGGGG 60.122 66.667 0.00 0.00 0.00 4.79
1105 1498 2.674672 GATTAGAGGCGGGGAGGGGA 62.675 65.000 0.00 0.00 0.00 4.81
1191 1588 0.809241 CTCCGCTGATGCAGGTTCTC 60.809 60.000 0.00 0.00 39.64 2.87
1209 1606 5.880887 GGTTCTCTACCCTTTTGGAGTATTG 59.119 44.000 0.00 0.00 44.07 1.90
1211 1608 6.049955 TCTCTACCCTTTTGGAGTATTGTG 57.950 41.667 0.00 0.00 44.07 3.33
1216 1613 4.014406 CCCTTTTGGAGTATTGTGGTACC 58.986 47.826 4.43 4.43 44.07 3.34
1231 1628 1.014352 GTACCTTTATGCCGGCTGTG 58.986 55.000 29.70 12.78 0.00 3.66
1267 1664 1.706287 GATTGGCCGAGCGGTTCTTC 61.706 60.000 10.94 0.25 37.65 2.87
1292 1689 0.657840 CGTGGCCGGATTCTTGATTC 59.342 55.000 5.05 0.00 0.00 2.52
1331 1739 2.022129 CCGTTGACCTGTGCGAGAC 61.022 63.158 0.00 0.00 0.00 3.36
1332 1740 2.022129 CGTTGACCTGTGCGAGACC 61.022 63.158 0.00 0.00 0.00 3.85
1367 1775 2.212579 CGGTTTTTGAGCGGTTTGC 58.787 52.632 0.00 0.00 45.09 3.68
1400 1818 0.174162 GCCTGAATTTTGCGCATCCT 59.826 50.000 12.75 0.00 0.00 3.24
1446 1864 6.636850 CCAGTTTTACAGTTGAGTGTAAATGC 59.363 38.462 19.35 15.86 46.93 3.56
1449 1867 5.940192 TTACAGTTGAGTGTAAATGCCAG 57.060 39.130 8.56 0.00 39.44 4.85
1488 1906 1.202818 GGTTGTTCTCCCTTGAGCTGT 60.203 52.381 0.00 0.00 38.58 4.40
1511 1929 6.945435 TGTGCCCAAGAAACAAGAGATTATTA 59.055 34.615 0.00 0.00 0.00 0.98
1572 1990 2.899900 TGGTGATTCTGCAGTCTGTACT 59.100 45.455 14.67 0.00 35.91 2.73
1573 1991 3.056536 TGGTGATTCTGCAGTCTGTACTC 60.057 47.826 14.67 0.00 31.97 2.59
1574 1992 3.194542 GGTGATTCTGCAGTCTGTACTCT 59.805 47.826 14.67 0.00 31.97 3.24
1575 1993 4.172505 GTGATTCTGCAGTCTGTACTCTG 58.827 47.826 14.67 1.95 31.97 3.35
1576 1994 3.829026 TGATTCTGCAGTCTGTACTCTGT 59.171 43.478 14.67 0.00 31.97 3.41
1577 1995 5.010282 TGATTCTGCAGTCTGTACTCTGTA 58.990 41.667 14.67 8.56 31.97 2.74
1578 1996 4.768130 TTCTGCAGTCTGTACTCTGTAC 57.232 45.455 14.67 1.33 31.97 2.90
1583 2001 3.426963 GCAGTCTGTACTCTGTACTCTGC 60.427 52.174 22.08 22.08 38.76 4.26
1615 2033 6.538021 TGTTGAGAAACCAATGGTGAATTTTG 59.462 34.615 5.34 0.00 35.34 2.44
1618 2036 5.367302 AGAAACCAATGGTGAATTTTGTGG 58.633 37.500 5.34 0.00 35.34 4.17
1634 2052 3.455469 GGTTGCAGGGATGGCAGC 61.455 66.667 0.00 0.00 43.05 5.25
1777 2195 1.227674 CTGAAGCACCGGATAGGGC 60.228 63.158 9.46 3.33 46.96 5.19
1806 2224 1.335132 TTGGGGACGTCTGGATAGCC 61.335 60.000 16.46 5.85 0.00 3.93
1817 2235 2.513897 GATAGCCACGCACCACCC 60.514 66.667 0.00 0.00 0.00 4.61
1994 2413 2.576615 GCAGAATGGGAGGGTATGTTC 58.423 52.381 0.00 0.00 35.86 3.18
1996 2415 3.745797 GCAGAATGGGAGGGTATGTTCTC 60.746 52.174 0.00 0.00 35.86 2.87
2045 2471 2.821969 ACCTGTGAATGAAAGATGGTGC 59.178 45.455 0.00 0.00 0.00 5.01
2101 2527 5.228012 GCTTTGCATAGCGATGAAGTTTTAC 59.772 40.000 13.48 0.00 34.73 2.01
2334 2784 2.519377 TCTACCAGTGAACGTGTTGG 57.481 50.000 0.00 0.00 36.76 3.77
2358 2808 6.205658 GGTTGATTAACTGGCAGATATCCTTC 59.794 42.308 23.66 9.07 36.99 3.46
2440 2890 7.442364 TCTGTTTAGAGGATGTTTTCTTGAGTG 59.558 37.037 0.00 0.00 0.00 3.51
2543 2996 9.768215 AGGGGAATATTTGTTCTTAATCTCAAA 57.232 29.630 0.00 0.00 34.95 2.69
2684 3137 0.184451 ATTACATGGCCCCAGAGCAG 59.816 55.000 0.00 0.00 0.00 4.24
2764 3218 3.189910 TGCAGCATTCTTGAGATGTTCAC 59.810 43.478 0.00 0.00 34.94 3.18
2880 3334 3.006247 GCAGAGGTTGAGAATGTCCTTC 58.994 50.000 0.00 0.00 0.00 3.46
2891 3345 2.998316 ATGTCCTTCCTAGCTGCTTC 57.002 50.000 7.79 0.00 0.00 3.86
2994 3448 3.503748 ACTTCTGCCTTATCAACTTGCAC 59.496 43.478 0.00 0.00 0.00 4.57
3037 3491 5.832221 TGGATGGGTGATTTTACCATGTTA 58.168 37.500 0.00 0.00 44.62 2.41
3108 3564 1.549203 ATGACAACAATGGCTGGGAC 58.451 50.000 0.00 0.00 34.75 4.46
3134 3590 0.888619 GAAAACCCAAGGGCAGTAGC 59.111 55.000 4.70 0.00 39.32 3.58
3135 3591 0.187361 AAAACCCAAGGGCAGTAGCA 59.813 50.000 4.70 0.00 44.61 3.49
3150 3606 3.741344 CAGTAGCACCAAGTCACACTAAC 59.259 47.826 0.00 0.00 0.00 2.34
3183 3639 2.134789 AGGATAAGCTGCAAGTTGGG 57.865 50.000 4.75 0.00 35.30 4.12
3286 3745 2.362397 GAGGATGGAGAACGTGATAGCA 59.638 50.000 0.00 0.00 0.00 3.49
3308 3767 3.262420 ACATTCTTGTACGAGTCCATGC 58.738 45.455 10.00 0.00 33.16 4.06
3376 3835 0.532862 CTATGGTTTCGCTGCCGGAT 60.533 55.000 5.05 0.00 34.56 4.18
3390 3849 0.680061 CCGGATACTGGGTAAGGCTC 59.320 60.000 0.00 0.00 0.00 4.70
3415 3874 1.001406 AGGAAGACAAGAAGCGGTCTG 59.999 52.381 0.00 0.00 43.26 3.51
3438 3897 4.636249 AGGTCGGAATTCTTCATAGCATC 58.364 43.478 5.23 0.00 0.00 3.91
3444 3903 1.852942 TTCTTCATAGCATCGACCGC 58.147 50.000 0.36 0.36 0.00 5.68
3558 4017 2.887152 ACAATTTGTGAGGCTGAGAACC 59.113 45.455 0.15 0.00 0.00 3.62
3573 4032 0.310854 GAACCAACACTTCAAGCCCG 59.689 55.000 0.00 0.00 0.00 6.13
3579 4038 2.668550 ACTTCAAGCCCGCGGTTC 60.669 61.111 26.12 15.59 0.00 3.62
3603 4062 2.510238 CAGCGAAAGAGAGGCGGG 60.510 66.667 0.00 0.00 0.00 6.13
3672 4131 0.178992 TTGTGACCTTCCCTGGCAAG 60.179 55.000 0.00 0.00 0.00 4.01
3675 4134 0.178992 TGACCTTCCCTGGCAAGTTG 60.179 55.000 0.00 0.00 0.00 3.16
3714 4173 3.249189 TGCTTGGCCGACCCTTCT 61.249 61.111 0.00 0.00 33.59 2.85
3795 4254 0.912487 AGGACTTCCATTGGGCGGTA 60.912 55.000 2.09 0.00 38.89 4.02
3798 4257 0.988832 ACTTCCATTGGGCGGTAAGA 59.011 50.000 2.09 0.00 0.00 2.10
4047 4506 0.587768 GCAAAAGCAATGTTGGGTGC 59.412 50.000 0.00 0.00 41.22 5.01
4050 4509 0.829333 AAAGCAATGTTGGGTGCACA 59.171 45.000 20.43 0.00 43.42 4.57
4051 4510 0.829333 AAGCAATGTTGGGTGCACAA 59.171 45.000 20.43 1.81 43.42 3.33
4058 4517 2.514129 TTGGGTGCACAACAATGCT 58.486 47.368 20.43 0.00 46.28 3.79
4059 4518 0.104487 TTGGGTGCACAACAATGCTG 59.896 50.000 20.43 0.00 46.28 4.41
4060 4519 1.005867 GGGTGCACAACAATGCTGG 60.006 57.895 20.43 0.00 46.28 4.85
4095 4554 0.303493 GCGACGCTTTGAACAAGTCA 59.697 50.000 13.73 0.00 32.57 3.41
4153 4615 8.527810 CCTTGCCAAAACCTTGTAAATTATCTA 58.472 33.333 0.00 0.00 0.00 1.98
4168 4630 6.552445 AATTATCTACCTCTGCAACTCAGT 57.448 37.500 0.00 0.00 43.32 3.41
4174 4636 1.661341 CTCTGCAACTCAGTATGCCC 58.339 55.000 8.82 0.00 43.32 5.36
4180 4642 0.978146 AACTCAGTATGCCCGAGCCT 60.978 55.000 0.00 0.00 38.69 4.58
4181 4643 0.106167 ACTCAGTATGCCCGAGCCTA 60.106 55.000 0.00 0.00 38.69 3.93
4182 4644 0.315568 CTCAGTATGCCCGAGCCTAC 59.684 60.000 0.00 0.00 39.59 3.18
4183 4645 1.113517 TCAGTATGCCCGAGCCTACC 61.114 60.000 0.87 0.00 40.00 3.18
4184 4646 1.837499 AGTATGCCCGAGCCTACCC 60.837 63.158 0.87 0.00 40.00 3.69
4185 4647 2.915659 TATGCCCGAGCCTACCCG 60.916 66.667 0.00 0.00 38.69 5.28
4186 4648 3.744003 TATGCCCGAGCCTACCCGT 62.744 63.158 0.00 0.00 38.69 5.28
4230 4698 4.388773 TGTTTCTAGAAGCATGCAACTACG 59.611 41.667 21.98 14.53 0.00 3.51
4231 4699 3.165058 TCTAGAAGCATGCAACTACGG 57.835 47.619 21.98 11.23 0.00 4.02
4304 4904 6.815089 TCATGTTTCTGCAAACTTACCAATT 58.185 32.000 3.11 0.00 42.29 2.32
4306 4906 6.900568 TGTTTCTGCAAACTTACCAATTTG 57.099 33.333 3.11 0.00 42.29 2.32
4315 4915 7.165427 CAAACTTACCAATTTGCTCAAGAAC 57.835 36.000 8.81 0.00 0.00 3.01
4316 4916 6.715347 AACTTACCAATTTGCTCAAGAACT 57.285 33.333 8.81 0.00 0.00 3.01
4318 4918 8.409358 AACTTACCAATTTGCTCAAGAACTAT 57.591 30.769 8.81 0.00 0.00 2.12
4320 4920 7.885399 ACTTACCAATTTGCTCAAGAACTATCT 59.115 33.333 8.81 0.00 37.57 1.98
4323 4923 6.716628 ACCAATTTGCTCAAGAACTATCTTCA 59.283 34.615 0.00 0.00 44.11 3.02
4324 4924 7.094463 ACCAATTTGCTCAAGAACTATCTTCAG 60.094 37.037 0.00 0.00 44.11 3.02
4325 4925 7.120285 CCAATTTGCTCAAGAACTATCTTCAGA 59.880 37.037 0.00 0.00 44.11 3.27
4326 4926 8.509690 CAATTTGCTCAAGAACTATCTTCAGAA 58.490 33.333 0.00 0.00 44.11 3.02
4327 4927 8.627208 ATTTGCTCAAGAACTATCTTCAGAAA 57.373 30.769 0.00 0.00 44.11 2.52
4328 4928 8.627208 TTTGCTCAAGAACTATCTTCAGAAAT 57.373 30.769 0.00 0.00 44.11 2.17
4383 4987 8.646900 TGGTAATCTGTTACAGCATATCATGTA 58.353 33.333 7.61 0.00 41.59 2.29
4384 4988 8.926710 GGTAATCTGTTACAGCATATCATGTAC 58.073 37.037 7.61 1.91 41.59 2.90
4386 4990 8.824159 AATCTGTTACAGCATATCATGTACTC 57.176 34.615 7.61 0.00 31.83 2.59
4387 4991 6.749139 TCTGTTACAGCATATCATGTACTCC 58.251 40.000 7.61 0.00 31.83 3.85
4388 4992 5.853936 TGTTACAGCATATCATGTACTCCC 58.146 41.667 0.00 0.00 31.83 4.30
4389 4993 5.602561 TGTTACAGCATATCATGTACTCCCT 59.397 40.000 0.00 0.00 31.83 4.20
4390 4994 4.881019 ACAGCATATCATGTACTCCCTC 57.119 45.455 0.00 0.00 0.00 4.30
4391 4995 3.580458 ACAGCATATCATGTACTCCCTCC 59.420 47.826 0.00 0.00 0.00 4.30
4392 4996 2.828520 AGCATATCATGTACTCCCTCCG 59.171 50.000 0.00 0.00 0.00 4.63
4393 4997 2.563179 GCATATCATGTACTCCCTCCGT 59.437 50.000 0.00 0.00 0.00 4.69
4394 4998 3.006967 GCATATCATGTACTCCCTCCGTT 59.993 47.826 0.00 0.00 0.00 4.44
4395 4999 4.810790 CATATCATGTACTCCCTCCGTTC 58.189 47.826 0.00 0.00 0.00 3.95
4396 5000 1.481871 TCATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
4397 5001 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
4398 5002 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
4399 5003 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
4400 5004 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
4416 5020 7.753580 CCGTTCCAAAATACAATCTAAACCTTC 59.246 37.037 0.00 0.00 0.00 3.46
4419 5023 8.893563 TCCAAAATACAATCTAAACCTTCCAT 57.106 30.769 0.00 0.00 0.00 3.41
4468 5072 7.666623 AGTGGTATAAAACAAAAACTGATGGG 58.333 34.615 0.00 0.00 0.00 4.00
4470 5074 8.311109 GTGGTATAAAACAAAAACTGATGGGAT 58.689 33.333 0.00 0.00 0.00 3.85
4471 5075 8.310382 TGGTATAAAACAAAAACTGATGGGATG 58.690 33.333 0.00 0.00 0.00 3.51
4472 5076 7.763985 GGTATAAAACAAAAACTGATGGGATGG 59.236 37.037 0.00 0.00 0.00 3.51
4473 5077 5.885449 AAAACAAAAACTGATGGGATGGA 57.115 34.783 0.00 0.00 0.00 3.41
4474 5078 4.871933 AACAAAAACTGATGGGATGGAC 57.128 40.909 0.00 0.00 0.00 4.02
4481 5098 1.002069 TGATGGGATGGACAAGGCTT 58.998 50.000 0.00 0.00 0.00 4.35
4509 5156 4.136051 CCTCCATTGCAAAACCAAAACAT 58.864 39.130 1.71 0.00 0.00 2.71
4631 5317 3.157881 CGGATGCTACCCTCTATTCTCA 58.842 50.000 0.00 0.00 0.00 3.27
4757 5443 3.056328 GCCTGGTTCAGCCGTTCC 61.056 66.667 0.00 0.00 41.21 3.62
4796 5482 3.248602 TCTTTCGCAGCTTCAGAGAAAAC 59.751 43.478 3.68 0.00 31.55 2.43
4969 5655 3.389925 ACATGCAGAAAACCAACCATG 57.610 42.857 0.00 0.00 36.90 3.66
4981 5667 1.133792 CCAACCATGTCCTGATACCCC 60.134 57.143 0.00 0.00 0.00 4.95
5023 5709 6.558014 AGTCCTTGTCCTCATCTAATGATCAT 59.442 38.462 1.18 1.18 38.85 2.45
5026 5712 4.903054 TGTCCTCATCTAATGATCATGGC 58.097 43.478 9.46 0.00 38.85 4.40
5027 5713 4.348754 TGTCCTCATCTAATGATCATGGCA 59.651 41.667 9.46 0.00 38.85 4.92
5046 5732 2.546778 CAATGAACAATCAGGCCATGC 58.453 47.619 5.01 0.00 39.39 4.06
5079 5765 5.461078 CAGTCAAAGTTGCAATCAGGAAAAG 59.539 40.000 0.59 0.00 0.00 2.27
5093 5779 4.999950 TCAGGAAAAGAGATTCTGAAGTGC 59.000 41.667 0.00 0.00 0.00 4.40
5193 5879 7.985184 TGATAGGACTGTGTATGGAAATGTTAC 59.015 37.037 0.00 0.00 0.00 2.50
5232 5918 4.120331 GCGCACCATGGCCTTCAC 62.120 66.667 13.04 0.00 0.00 3.18
5274 5960 0.040058 TCCCAGTCCTGCAATGCATT 59.960 50.000 8.91 5.99 38.13 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.279120 CGTCATCGCTCTCCCTGC 60.279 66.667 0.00 0.00 0.00 4.85
1 2 2.415010 CCGTCATCGCTCTCCCTG 59.585 66.667 0.00 0.00 35.54 4.45
3 4 2.194212 TAGCCGTCATCGCTCTCCC 61.194 63.158 0.00 0.00 35.54 4.30
4 5 1.008309 GTAGCCGTCATCGCTCTCC 60.008 63.158 0.00 0.00 35.54 3.71
5 6 1.369448 CGTAGCCGTCATCGCTCTC 60.369 63.158 0.00 0.00 35.54 3.20
6 7 2.716244 CGTAGCCGTCATCGCTCT 59.284 61.111 0.00 0.00 35.54 4.09
19 20 2.789203 GCGAACTCAAGGCGCGTAG 61.789 63.158 8.43 0.00 41.37 3.51
20 21 2.807895 GCGAACTCAAGGCGCGTA 60.808 61.111 8.43 0.00 41.37 4.42
24 25 1.021390 ATTGGAGCGAACTCAAGGCG 61.021 55.000 0.00 0.00 45.42 5.52
25 26 0.449388 CATTGGAGCGAACTCAAGGC 59.551 55.000 0.00 0.00 45.42 4.35
26 27 2.099141 TCATTGGAGCGAACTCAAGG 57.901 50.000 0.00 0.00 45.42 3.61
27 28 5.998454 ATAATCATTGGAGCGAACTCAAG 57.002 39.130 0.00 0.00 45.42 3.02
28 29 7.095649 CGATTATAATCATTGGAGCGAACTCAA 60.096 37.037 22.22 0.00 38.78 3.02
29 30 6.366061 CGATTATAATCATTGGAGCGAACTCA 59.634 38.462 22.22 0.00 38.78 3.41
30 31 6.366332 ACGATTATAATCATTGGAGCGAACTC 59.634 38.462 22.22 0.00 37.45 3.01
31 32 6.223852 ACGATTATAATCATTGGAGCGAACT 58.776 36.000 22.22 0.00 35.11 3.01
32 33 6.467723 ACGATTATAATCATTGGAGCGAAC 57.532 37.500 22.22 0.00 35.11 3.95
33 34 5.344933 CGACGATTATAATCATTGGAGCGAA 59.655 40.000 22.22 0.00 35.11 4.70
34 35 4.857037 CGACGATTATAATCATTGGAGCGA 59.143 41.667 22.22 0.00 35.11 4.93
35 36 4.490959 GCGACGATTATAATCATTGGAGCG 60.491 45.833 22.22 14.81 35.11 5.03
36 37 4.627467 AGCGACGATTATAATCATTGGAGC 59.373 41.667 22.22 16.98 35.11 4.70
37 38 6.473778 CCTAGCGACGATTATAATCATTGGAG 59.526 42.308 22.22 12.43 35.11 3.86
38 39 6.071560 ACCTAGCGACGATTATAATCATTGGA 60.072 38.462 22.22 4.99 35.11 3.53
39 40 6.035005 CACCTAGCGACGATTATAATCATTGG 59.965 42.308 22.22 15.43 35.11 3.16
40 41 6.035005 CCACCTAGCGACGATTATAATCATTG 59.965 42.308 22.22 13.89 35.11 2.82
41 42 6.100004 CCACCTAGCGACGATTATAATCATT 58.900 40.000 22.22 10.50 35.11 2.57
42 43 5.185249 ACCACCTAGCGACGATTATAATCAT 59.815 40.000 22.22 9.87 35.11 2.45
43 44 4.521639 ACCACCTAGCGACGATTATAATCA 59.478 41.667 22.22 3.99 35.11 2.57
44 45 5.056894 ACCACCTAGCGACGATTATAATC 57.943 43.478 14.45 14.45 0.00 1.75
45 46 4.082354 GGACCACCTAGCGACGATTATAAT 60.082 45.833 0.00 0.00 0.00 1.28
46 47 3.254166 GGACCACCTAGCGACGATTATAA 59.746 47.826 0.00 0.00 0.00 0.98
47 48 2.816087 GGACCACCTAGCGACGATTATA 59.184 50.000 0.00 0.00 0.00 0.98
48 49 1.612463 GGACCACCTAGCGACGATTAT 59.388 52.381 0.00 0.00 0.00 1.28
49 50 1.027357 GGACCACCTAGCGACGATTA 58.973 55.000 0.00 0.00 0.00 1.75
50 51 0.968901 TGGACCACCTAGCGACGATT 60.969 55.000 0.00 0.00 37.04 3.34
51 52 1.379443 TGGACCACCTAGCGACGAT 60.379 57.895 0.00 0.00 37.04 3.73
52 53 2.034532 TGGACCACCTAGCGACGA 59.965 61.111 0.00 0.00 37.04 4.20
53 54 2.181021 GTGGACCACCTAGCGACG 59.819 66.667 14.16 0.00 37.04 5.12
54 55 1.215647 CTGTGGACCACCTAGCGAC 59.784 63.158 22.00 0.00 37.04 5.19
55 56 1.076014 TCTGTGGACCACCTAGCGA 59.924 57.895 22.00 7.71 37.04 4.93
56 57 1.215647 GTCTGTGGACCACCTAGCG 59.784 63.158 22.00 5.53 36.53 4.26
85 86 8.166422 ACAAAGAACACCAGAGGTAATAAAAG 57.834 34.615 0.00 0.00 32.11 2.27
115 116 9.895138 TTTCAATCTATTCATCTTCAGTCATGA 57.105 29.630 0.00 0.00 0.00 3.07
158 159 5.799827 TGGGGTTTGTTTCCTTTAGATTG 57.200 39.130 0.00 0.00 0.00 2.67
159 160 5.185056 CGATGGGGTTTGTTTCCTTTAGATT 59.815 40.000 0.00 0.00 0.00 2.40
160 161 4.705023 CGATGGGGTTTGTTTCCTTTAGAT 59.295 41.667 0.00 0.00 0.00 1.98
161 162 4.076394 CGATGGGGTTTGTTTCCTTTAGA 58.924 43.478 0.00 0.00 0.00 2.10
162 163 4.076394 TCGATGGGGTTTGTTTCCTTTAG 58.924 43.478 0.00 0.00 0.00 1.85
163 164 4.101645 TCGATGGGGTTTGTTTCCTTTA 57.898 40.909 0.00 0.00 0.00 1.85
164 165 2.952116 TCGATGGGGTTTGTTTCCTTT 58.048 42.857 0.00 0.00 0.00 3.11
166 167 2.235891 GTTCGATGGGGTTTGTTTCCT 58.764 47.619 0.00 0.00 0.00 3.36
173 177 0.970427 GGGCATGTTCGATGGGGTTT 60.970 55.000 0.00 0.00 0.00 3.27
182 186 1.021390 GTGGAGACTGGGCATGTTCG 61.021 60.000 0.00 0.00 0.00 3.95
202 206 4.642437 GCCAAGAGAATAAAGAAGGAAGGG 59.358 45.833 0.00 0.00 0.00 3.95
204 208 7.459795 AAAGCCAAGAGAATAAAGAAGGAAG 57.540 36.000 0.00 0.00 0.00 3.46
208 212 7.777440 AGGGATAAAGCCAAGAGAATAAAGAAG 59.223 37.037 0.00 0.00 0.00 2.85
229 233 0.389391 CGATGCGTCTGGTAAGGGAT 59.611 55.000 4.05 0.00 0.00 3.85
234 238 1.141019 GAGGCGATGCGTCTGGTAA 59.859 57.895 4.05 0.00 43.67 2.85
237 241 3.781770 GAGGAGGCGATGCGTCTGG 62.782 68.421 10.79 0.00 43.67 3.86
244 248 0.388659 CAGAGGAAGAGGAGGCGATG 59.611 60.000 0.00 0.00 0.00 3.84
248 252 3.540617 GATTTTCAGAGGAAGAGGAGGC 58.459 50.000 0.00 0.00 33.82 4.70
263 267 4.142469 ACGTGGATTTTGATCGGGATTTTC 60.142 41.667 0.00 0.00 0.00 2.29
314 318 5.178797 CGGTCTCTATGAAGAACAATGGTT 58.821 41.667 0.00 0.00 40.76 3.67
315 319 4.223032 ACGGTCTCTATGAAGAACAATGGT 59.777 41.667 0.00 0.00 32.18 3.55
321 325 3.870633 ACCACGGTCTCTATGAAGAAC 57.129 47.619 0.00 0.00 0.00 3.01
324 328 2.623889 CCCTACCACGGTCTCTATGAAG 59.376 54.545 0.00 0.00 0.00 3.02
325 329 2.662866 CCCTACCACGGTCTCTATGAA 58.337 52.381 0.00 0.00 0.00 2.57
327 331 1.133575 TCCCCTACCACGGTCTCTATG 60.134 57.143 0.00 0.00 0.00 2.23
328 332 1.229131 TCCCCTACCACGGTCTCTAT 58.771 55.000 0.00 0.00 0.00 1.98
329 333 1.002069 TTCCCCTACCACGGTCTCTA 58.998 55.000 0.00 0.00 0.00 2.43
331 335 0.324091 TCTTCCCCTACCACGGTCTC 60.324 60.000 0.00 0.00 0.00 3.36
332 336 0.324460 CTCTTCCCCTACCACGGTCT 60.324 60.000 0.00 0.00 0.00 3.85
333 337 1.328430 CCTCTTCCCCTACCACGGTC 61.328 65.000 0.00 0.00 0.00 4.79
334 338 1.305887 CCTCTTCCCCTACCACGGT 60.306 63.158 0.00 0.00 0.00 4.83
335 339 1.305887 ACCTCTTCCCCTACCACGG 60.306 63.158 0.00 0.00 0.00 4.94
336 340 1.614241 CCACCTCTTCCCCTACCACG 61.614 65.000 0.00 0.00 0.00 4.94
337 341 0.546988 ACCACCTCTTCCCCTACCAC 60.547 60.000 0.00 0.00 0.00 4.16
338 342 0.252558 GACCACCTCTTCCCCTACCA 60.253 60.000 0.00 0.00 0.00 3.25
339 343 1.328430 CGACCACCTCTTCCCCTACC 61.328 65.000 0.00 0.00 0.00 3.18
340 344 0.324091 TCGACCACCTCTTCCCCTAC 60.324 60.000 0.00 0.00 0.00 3.18
341 345 0.033405 CTCGACCACCTCTTCCCCTA 60.033 60.000 0.00 0.00 0.00 3.53
342 346 1.305381 CTCGACCACCTCTTCCCCT 60.305 63.158 0.00 0.00 0.00 4.79
343 347 2.359967 CCTCGACCACCTCTTCCCC 61.360 68.421 0.00 0.00 0.00 4.81
344 348 3.020237 GCCTCGACCACCTCTTCCC 62.020 68.421 0.00 0.00 0.00 3.97
345 349 2.232298 CTGCCTCGACCACCTCTTCC 62.232 65.000 0.00 0.00 0.00 3.46
346 350 1.216710 CTGCCTCGACCACCTCTTC 59.783 63.158 0.00 0.00 0.00 2.87
347 351 2.948720 GCTGCCTCGACCACCTCTT 61.949 63.158 0.00 0.00 0.00 2.85
348 352 3.386237 GCTGCCTCGACCACCTCT 61.386 66.667 0.00 0.00 0.00 3.69
349 353 4.803426 CGCTGCCTCGACCACCTC 62.803 72.222 0.00 0.00 0.00 3.85
362 366 4.430423 GTTGCTTCCGCGACGCTG 62.430 66.667 19.02 12.03 40.50 5.18
367 371 2.745884 CCATGGTTGCTTCCGCGA 60.746 61.111 8.23 0.00 39.65 5.87
368 372 3.814268 CCCATGGTTGCTTCCGCG 61.814 66.667 11.73 0.00 39.65 6.46
369 373 3.451894 CCCCATGGTTGCTTCCGC 61.452 66.667 11.73 0.00 0.00 5.54
370 374 2.035626 ACCCCATGGTTGCTTCCG 59.964 61.111 11.73 0.00 44.75 4.30
371 375 0.324645 ATCACCCCATGGTTGCTTCC 60.325 55.000 11.73 0.00 44.75 3.46
372 376 0.819582 CATCACCCCATGGTTGCTTC 59.180 55.000 11.73 0.00 44.75 3.86
373 377 0.615544 CCATCACCCCATGGTTGCTT 60.616 55.000 11.73 0.00 44.75 3.91
374 378 1.000739 CCATCACCCCATGGTTGCT 59.999 57.895 11.73 0.00 44.75 3.91
375 379 0.397535 ATCCATCACCCCATGGTTGC 60.398 55.000 11.73 0.00 44.75 4.17
376 380 1.405872 CATCCATCACCCCATGGTTG 58.594 55.000 11.73 7.64 44.75 3.77
377 381 0.262580 CCATCCATCACCCCATGGTT 59.737 55.000 11.73 0.00 44.75 3.67
379 383 0.111832 CTCCATCCATCACCCCATGG 59.888 60.000 4.14 4.14 44.45 3.66
380 384 0.111832 CCTCCATCCATCACCCCATG 59.888 60.000 0.00 0.00 0.00 3.66
381 385 0.028747 TCCTCCATCCATCACCCCAT 60.029 55.000 0.00 0.00 0.00 4.00
382 386 0.028747 ATCCTCCATCCATCACCCCA 60.029 55.000 0.00 0.00 0.00 4.96
383 387 0.403271 CATCCTCCATCCATCACCCC 59.597 60.000 0.00 0.00 0.00 4.95
384 388 1.143813 ACATCCTCCATCCATCACCC 58.856 55.000 0.00 0.00 0.00 4.61
385 389 1.770658 TCACATCCTCCATCCATCACC 59.229 52.381 0.00 0.00 0.00 4.02
386 390 2.224475 CCTCACATCCTCCATCCATCAC 60.224 54.545 0.00 0.00 0.00 3.06
387 391 2.052468 CCTCACATCCTCCATCCATCA 58.948 52.381 0.00 0.00 0.00 3.07
388 392 1.350351 CCCTCACATCCTCCATCCATC 59.650 57.143 0.00 0.00 0.00 3.51
389 393 1.345838 ACCCTCACATCCTCCATCCAT 60.346 52.381 0.00 0.00 0.00 3.41
394 659 1.630369 CTTCAACCCTCACATCCTCCA 59.370 52.381 0.00 0.00 0.00 3.86
401 666 1.072331 GCCTCTTCTTCAACCCTCACA 59.928 52.381 0.00 0.00 0.00 3.58
408 673 1.888512 TGCCATTGCCTCTTCTTCAAC 59.111 47.619 0.00 0.00 36.33 3.18
414 679 0.733909 GCGTTTGCCATTGCCTCTTC 60.734 55.000 0.00 0.00 36.33 2.87
433 698 1.062587 GTCGAATCCTGGTTGATTGCG 59.937 52.381 0.00 0.00 35.15 4.85
438 703 0.036388 GCTGGTCGAATCCTGGTTGA 60.036 55.000 0.00 0.00 0.00 3.18
441 706 1.194781 ACTGCTGGTCGAATCCTGGT 61.195 55.000 0.00 0.00 0.00 4.00
465 730 1.568118 ATAACCACCAACCCCTCCCG 61.568 60.000 0.00 0.00 0.00 5.14
466 731 0.033503 CATAACCACCAACCCCTCCC 60.034 60.000 0.00 0.00 0.00 4.30
468 733 1.029947 CGCATAACCACCAACCCCTC 61.030 60.000 0.00 0.00 0.00 4.30
469 734 1.001393 CGCATAACCACCAACCCCT 60.001 57.895 0.00 0.00 0.00 4.79
472 737 1.528292 TTGCCGCATAACCACCAACC 61.528 55.000 0.00 0.00 0.00 3.77
474 739 1.247419 CCTTGCCGCATAACCACCAA 61.247 55.000 0.00 0.00 0.00 3.67
476 741 3.063743 GCCTTGCCGCATAACCACC 62.064 63.158 0.00 0.00 0.00 4.61
478 743 3.130819 CGCCTTGCCGCATAACCA 61.131 61.111 0.00 0.00 0.00 3.67
481 746 2.112198 CCTTCGCCTTGCCGCATAA 61.112 57.895 0.00 0.00 0.00 1.90
482 747 2.513666 CCTTCGCCTTGCCGCATA 60.514 61.111 0.00 0.00 0.00 3.14
487 752 4.103103 GTTCGCCTTCGCCTTGCC 62.103 66.667 0.00 0.00 35.26 4.52
488 753 4.445545 CGTTCGCCTTCGCCTTGC 62.446 66.667 0.00 0.00 35.26 4.01
489 754 3.041940 ACGTTCGCCTTCGCCTTG 61.042 61.111 0.00 0.00 35.26 3.61
490 755 2.424705 TACACGTTCGCCTTCGCCTT 62.425 55.000 0.00 0.00 35.26 4.35
493 765 2.442188 CCTACACGTTCGCCTTCGC 61.442 63.158 0.00 0.00 35.26 4.70
521 793 7.362662 GTTTCAACCACATATACCAGCATATG 58.637 38.462 0.00 0.00 42.29 1.78
522 794 7.510549 GTTTCAACCACATATACCAGCATAT 57.489 36.000 0.00 0.00 0.00 1.78
523 795 6.935741 GTTTCAACCACATATACCAGCATA 57.064 37.500 0.00 0.00 0.00 3.14
524 796 5.835113 GTTTCAACCACATATACCAGCAT 57.165 39.130 0.00 0.00 0.00 3.79
545 817 7.126733 AGGTTCTTCTAGATAGTGTGTATGGT 58.873 38.462 0.00 0.00 0.00 3.55
564 836 7.063593 TGCAACAGATATAGTCTCTAGGTTCT 58.936 38.462 0.00 0.00 34.00 3.01
570 842 6.775142 AGAGCTTGCAACAGATATAGTCTCTA 59.225 38.462 0.00 0.00 34.00 2.43
573 845 5.362143 TGAGAGCTTGCAACAGATATAGTCT 59.638 40.000 0.00 0.00 37.80 3.24
582 854 7.959689 ACTTATATATGAGAGCTTGCAACAG 57.040 36.000 11.24 0.00 0.00 3.16
591 863 9.632807 AGATGAAACGAACTTATATATGAGAGC 57.367 33.333 11.24 2.32 0.00 4.09
626 898 7.066887 GTGGGTTTGAATGAAATGAACCTTTTT 59.933 33.333 0.00 0.00 39.67 1.94
627 899 6.542005 GTGGGTTTGAATGAAATGAACCTTTT 59.458 34.615 0.00 0.00 39.67 2.27
628 900 6.054941 GTGGGTTTGAATGAAATGAACCTTT 58.945 36.000 0.00 0.00 39.67 3.11
629 901 5.366477 AGTGGGTTTGAATGAAATGAACCTT 59.634 36.000 0.00 0.00 39.67 3.50
630 902 4.901250 AGTGGGTTTGAATGAAATGAACCT 59.099 37.500 0.00 0.00 39.67 3.50
631 903 5.213891 AGTGGGTTTGAATGAAATGAACC 57.786 39.130 0.00 0.00 39.16 3.62
632 904 8.655651 TTTAAGTGGGTTTGAATGAAATGAAC 57.344 30.769 0.00 0.00 0.00 3.18
633 905 9.323985 CTTTTAAGTGGGTTTGAATGAAATGAA 57.676 29.630 0.00 0.00 0.00 2.57
634 906 7.930865 CCTTTTAAGTGGGTTTGAATGAAATGA 59.069 33.333 0.00 0.00 0.00 2.57
635 907 7.930865 TCCTTTTAAGTGGGTTTGAATGAAATG 59.069 33.333 0.00 0.00 0.00 2.32
636 908 8.028652 TCCTTTTAAGTGGGTTTGAATGAAAT 57.971 30.769 0.00 0.00 0.00 2.17
637 909 7.425224 TCCTTTTAAGTGGGTTTGAATGAAA 57.575 32.000 0.00 0.00 0.00 2.69
648 920 7.733773 AAGGGAATAATTCCTTTTAAGTGGG 57.266 36.000 1.79 0.00 45.75 4.61
676 948 9.817809 GGTTGAATAATTCCTTTTAATTCCCTC 57.182 33.333 0.00 0.00 31.63 4.30
677 949 9.332713 TGGTTGAATAATTCCTTTTAATTCCCT 57.667 29.630 0.00 0.00 31.63 4.20
678 950 9.599866 CTGGTTGAATAATTCCTTTTAATTCCC 57.400 33.333 0.00 0.00 31.63 3.97
752 1025 7.533289 TCGGTTTTCCTTTTCCTTTTGATAT 57.467 32.000 0.00 0.00 37.95 1.63
753 1026 6.963083 TCGGTTTTCCTTTTCCTTTTGATA 57.037 33.333 0.00 0.00 37.95 2.15
754 1027 5.862678 TCGGTTTTCCTTTTCCTTTTGAT 57.137 34.783 0.00 0.00 37.95 2.57
755 1028 5.394773 CCTTCGGTTTTCCTTTTCCTTTTGA 60.395 40.000 0.00 0.00 37.95 2.69
780 1162 2.290450 CCCGTTACCTTTTCCCTTGCTA 60.290 50.000 0.00 0.00 0.00 3.49
889 1271 2.696504 GGAAAGAGGGGGAGGGGG 60.697 72.222 0.00 0.00 0.00 5.40
890 1272 2.696504 GGGAAAGAGGGGGAGGGG 60.697 72.222 0.00 0.00 0.00 4.79
891 1273 2.696504 GGGGAAAGAGGGGGAGGG 60.697 72.222 0.00 0.00 0.00 4.30
892 1274 1.694525 GAGGGGAAAGAGGGGGAGG 60.695 68.421 0.00 0.00 0.00 4.30
917 1299 4.218686 AGGTTGGGTGGGTGGTGC 62.219 66.667 0.00 0.00 0.00 5.01
918 1300 2.115266 GAGGTTGGGTGGGTGGTG 59.885 66.667 0.00 0.00 0.00 4.17
919 1301 3.182996 GGAGGTTGGGTGGGTGGT 61.183 66.667 0.00 0.00 0.00 4.16
920 1302 3.182263 TGGAGGTTGGGTGGGTGG 61.182 66.667 0.00 0.00 0.00 4.61
923 1305 2.436109 CACTGGAGGTTGGGTGGG 59.564 66.667 0.00 0.00 0.00 4.61
947 1339 2.279120 GAGGAGGCGACATGAGCG 60.279 66.667 0.00 3.83 35.00 5.03
983 1375 2.185350 CTGCGGCTACTGGAGTGG 59.815 66.667 0.00 0.00 0.00 4.00
1014 1406 9.793259 AGTACTGAAAAAGAAACCTATGAATCA 57.207 29.630 0.00 0.00 0.00 2.57
1046 1439 0.030638 CGAACTGGGTTTGCTTGGTG 59.969 55.000 0.00 0.00 0.00 4.17
1061 1454 2.022129 CTGAGTGGTGTCGGCGAAC 61.022 63.158 12.92 12.26 0.00 3.95
1077 1470 2.289320 CCCGCCTCTAATCTGAATCCTG 60.289 54.545 0.00 0.00 0.00 3.86
1101 1494 1.292223 GCCTTTTCCGCTTTTCCCC 59.708 57.895 0.00 0.00 0.00 4.81
1102 1495 0.038251 CTGCCTTTTCCGCTTTTCCC 60.038 55.000 0.00 0.00 0.00 3.97
1103 1496 0.958822 TCTGCCTTTTCCGCTTTTCC 59.041 50.000 0.00 0.00 0.00 3.13
1104 1497 1.663161 CGTCTGCCTTTTCCGCTTTTC 60.663 52.381 0.00 0.00 0.00 2.29
1105 1498 0.310854 CGTCTGCCTTTTCCGCTTTT 59.689 50.000 0.00 0.00 0.00 2.27
1191 1588 4.918588 ACCACAATACTCCAAAAGGGTAG 58.081 43.478 0.00 0.00 38.11 3.18
1200 1597 5.433526 GCATAAAGGTACCACAATACTCCA 58.566 41.667 15.94 0.00 0.00 3.86
1201 1598 4.820173 GGCATAAAGGTACCACAATACTCC 59.180 45.833 15.94 1.64 0.00 3.85
1202 1599 4.510340 CGGCATAAAGGTACCACAATACTC 59.490 45.833 15.94 0.00 0.00 2.59
1203 1600 4.448210 CGGCATAAAGGTACCACAATACT 58.552 43.478 15.94 0.00 0.00 2.12
1204 1601 3.562557 CCGGCATAAAGGTACCACAATAC 59.437 47.826 15.94 0.00 0.00 1.89
1209 1606 0.107361 AGCCGGCATAAAGGTACCAC 60.107 55.000 31.54 0.00 0.00 4.16
1211 1608 0.107361 ACAGCCGGCATAAAGGTACC 60.107 55.000 31.54 2.73 0.00 3.34
1216 1613 0.729116 CTCACACAGCCGGCATAAAG 59.271 55.000 31.54 15.53 0.00 1.85
1231 1628 0.103208 ATCCGGCGAGAATCACTCAC 59.897 55.000 9.30 0.00 45.14 3.51
1292 1689 2.187946 GGCCTGGATCACGGACAG 59.812 66.667 0.00 0.00 0.00 3.51
1331 1739 2.268298 CCGTAAGAATCACTCAACCGG 58.732 52.381 0.00 0.00 43.02 5.28
1332 1740 2.955614 ACCGTAAGAATCACTCAACCG 58.044 47.619 0.00 0.00 43.02 4.44
1361 1769 1.466360 CGCAGATACAAGCAGCAAACC 60.466 52.381 0.00 0.00 0.00 3.27
1362 1770 1.887320 CGCAGATACAAGCAGCAAAC 58.113 50.000 0.00 0.00 0.00 2.93
1363 1771 0.168788 GCGCAGATACAAGCAGCAAA 59.831 50.000 0.30 0.00 33.03 3.68
1364 1772 1.647545 GGCGCAGATACAAGCAGCAA 61.648 55.000 10.83 0.00 33.93 3.91
1365 1773 2.108514 GGCGCAGATACAAGCAGCA 61.109 57.895 10.83 0.00 33.93 4.41
1366 1774 1.817099 AGGCGCAGATACAAGCAGC 60.817 57.895 10.83 0.00 0.00 5.25
1367 1775 0.460811 TCAGGCGCAGATACAAGCAG 60.461 55.000 10.83 0.00 0.00 4.24
1368 1776 0.036483 TTCAGGCGCAGATACAAGCA 60.036 50.000 10.83 0.00 0.00 3.91
1369 1777 1.303309 ATTCAGGCGCAGATACAAGC 58.697 50.000 10.83 0.00 0.00 4.01
1370 1778 4.100529 CAAAATTCAGGCGCAGATACAAG 58.899 43.478 10.83 0.00 0.00 3.16
1446 1864 2.026449 AGAAACAAGATCCCTGCTCTGG 60.026 50.000 0.00 0.00 0.00 3.86
1449 1867 2.290577 ACCAGAAACAAGATCCCTGCTC 60.291 50.000 0.00 0.00 0.00 4.26
1488 1906 8.469200 CAATAATAATCTCTTGTTTCTTGGGCA 58.531 33.333 0.00 0.00 0.00 5.36
1572 1990 2.039418 ACAACAGGTGCAGAGTACAGA 58.961 47.619 0.00 0.00 0.00 3.41
1573 1991 2.533266 ACAACAGGTGCAGAGTACAG 57.467 50.000 0.00 0.00 0.00 2.74
1574 1992 2.169561 TCAACAACAGGTGCAGAGTACA 59.830 45.455 0.00 0.00 0.00 2.90
1575 1993 2.802816 CTCAACAACAGGTGCAGAGTAC 59.197 50.000 0.00 0.00 30.57 2.73
1576 1994 2.698274 TCTCAACAACAGGTGCAGAGTA 59.302 45.455 7.44 0.00 34.59 2.59
1577 1995 1.486310 TCTCAACAACAGGTGCAGAGT 59.514 47.619 7.44 0.00 34.59 3.24
1578 1996 2.245159 TCTCAACAACAGGTGCAGAG 57.755 50.000 2.03 2.03 34.39 3.35
1583 2001 4.362279 CATTGGTTTCTCAACAACAGGTG 58.638 43.478 0.00 0.00 34.15 4.00
1615 2033 2.283101 TGCCATCCCTGCAACCAC 60.283 61.111 0.00 0.00 35.40 4.16
1618 2036 3.455469 GGCTGCCATCCCTGCAAC 61.455 66.667 15.17 0.00 38.46 4.17
1645 2063 3.910104 GAACGATTCGGCGTCGGC 61.910 66.667 21.25 9.07 44.86 5.54
1788 2206 1.760875 GGCTATCCAGACGTCCCCA 60.761 63.158 13.01 0.00 0.00 4.96
1817 2235 0.945813 GTCATAGTCCTCCGTCCTCG 59.054 60.000 0.00 0.00 0.00 4.63
1830 2248 0.666913 CCTCGTGGTACCGGTCATAG 59.333 60.000 12.40 6.02 0.00 2.23
1854 2272 1.672030 CGGGTGCAGCATCTTCACA 60.672 57.895 19.06 0.00 32.69 3.58
2045 2471 6.705381 TCCATGAAACAAAAATTAAGCCACAG 59.295 34.615 0.00 0.00 0.00 3.66
2101 2527 2.831742 TCCCCGACGGATCCTTCG 60.832 66.667 28.66 28.66 34.86 3.79
2226 2666 7.108841 ACTGTATTCTTAAGATAAGCCGACA 57.891 36.000 5.89 2.94 0.00 4.35
2286 2728 2.566833 ACTGCATGCTTAGGTGACAA 57.433 45.000 20.33 0.00 0.00 3.18
2334 2784 6.767902 TGAAGGATATCTGCCAGTTAATCAAC 59.232 38.462 2.05 0.00 34.67 3.18
2358 2808 1.089920 GTGCCTGCACTAAGGTGATG 58.910 55.000 14.77 0.00 45.61 3.07
2386 2836 6.913170 TCATAAGCATTCTCAAAAGTCAACC 58.087 36.000 0.00 0.00 0.00 3.77
2424 2874 7.865706 ATATGTACCACTCAAGAAAACATCC 57.134 36.000 0.00 0.00 0.00 3.51
2455 2908 6.017440 GCCGTATCTGCAAATTACAGGAAATA 60.017 38.462 8.18 0.00 35.78 1.40
2467 2920 2.916502 ATCGGCGCCGTATCTGCAAA 62.917 55.000 44.16 25.16 40.74 3.68
2543 2996 4.834496 TCATCAAGGAGAAAATTGCAAGGT 59.166 37.500 4.94 0.00 0.00 3.50
2657 3110 2.225496 TGGGGCCATGTAATTTGGAGTT 60.225 45.455 4.39 0.00 36.26 3.01
2684 3137 1.270550 CCTCTGATGTTTGGTTGCCAC 59.729 52.381 0.00 0.00 30.78 5.01
2880 3334 2.621055 AGTCATACTCGAAGCAGCTAGG 59.379 50.000 0.00 0.00 0.00 3.02
2891 3345 2.651701 CGATCCCGAAAGTCATACTCG 58.348 52.381 0.00 0.00 38.22 4.18
2994 3448 6.279513 TCCAATGGCAGTTTAACCAAATAG 57.720 37.500 0.00 0.00 39.96 1.73
3062 3518 5.702670 TCCACATCTTTAGCACTGAAGAAAG 59.297 40.000 8.71 7.44 38.43 2.62
3108 3564 1.341209 GCCCTTGGGTTTTCAGAACTG 59.659 52.381 7.61 0.00 0.00 3.16
3134 3590 3.131396 GACCAGTTAGTGTGACTTGGTG 58.869 50.000 3.79 0.00 32.48 4.17
3135 3591 2.769663 TGACCAGTTAGTGTGACTTGGT 59.230 45.455 0.00 0.00 33.91 3.67
3150 3606 3.686726 GCTTATCCTTGAAGTGTGACCAG 59.313 47.826 0.00 0.00 0.00 4.00
3286 3745 3.684788 GCATGGACTCGTACAAGAATGTT 59.315 43.478 0.00 0.00 41.05 2.71
3376 3835 0.714180 TCCCTGAGCCTTACCCAGTA 59.286 55.000 0.00 0.00 0.00 2.74
3390 3849 1.674221 CGCTTCTTGTCTTCCTCCCTG 60.674 57.143 0.00 0.00 0.00 4.45
3415 3874 4.060038 TGCTATGAAGAATTCCGACCTC 57.940 45.455 0.65 0.00 46.93 3.85
3444 3903 1.135431 CCAACATACACGGTGCCATTG 60.135 52.381 8.30 7.86 0.00 2.82
3531 3990 1.133513 AGCCTCACAAATTGTCCCACA 60.134 47.619 0.00 0.00 0.00 4.17
3558 4017 2.252260 CGCGGGCTTGAAGTGTTG 59.748 61.111 0.00 0.00 0.00 3.33
3573 4032 4.520846 CGCTGCCATTCGAACCGC 62.521 66.667 0.00 5.59 0.00 5.68
3579 4038 0.649475 CTCTCTTTCGCTGCCATTCG 59.351 55.000 0.00 0.00 0.00 3.34
3587 4046 3.775654 CCCCGCCTCTCTTTCGCT 61.776 66.667 0.00 0.00 0.00 4.93
3672 4131 1.166531 ACACTTCGCCAAGGCTCAAC 61.167 55.000 9.73 0.00 39.32 3.18
3675 4134 2.970974 GCACACTTCGCCAAGGCTC 61.971 63.158 9.73 0.00 39.32 4.70
3714 4173 2.217038 GCTCACCACCTCCACCTCA 61.217 63.158 0.00 0.00 0.00 3.86
3795 4254 0.976641 TGGCGATGAACAGAGGTCTT 59.023 50.000 0.00 0.00 0.00 3.01
3798 4257 1.414181 CCTATGGCGATGAACAGAGGT 59.586 52.381 0.00 0.00 40.34 3.85
3846 4305 0.108804 TGATGCTCTTCCCGACGAAC 60.109 55.000 0.00 0.00 0.00 3.95
3849 4308 0.389817 TTGTGATGCTCTTCCCGACG 60.390 55.000 0.00 0.00 0.00 5.12
4047 4506 4.212004 CGAGATATACCCAGCATTGTTGTG 59.788 45.833 0.00 0.00 0.00 3.33
4050 4509 4.955811 TCGAGATATACCCAGCATTGTT 57.044 40.909 0.00 0.00 0.00 2.83
4051 4510 4.528206 TGATCGAGATATACCCAGCATTGT 59.472 41.667 0.00 0.00 0.00 2.71
4052 4511 5.077134 TGATCGAGATATACCCAGCATTG 57.923 43.478 0.00 0.00 0.00 2.82
4053 4512 5.668471 CATGATCGAGATATACCCAGCATT 58.332 41.667 0.00 0.00 0.00 3.56
4055 4514 3.118992 GCATGATCGAGATATACCCAGCA 60.119 47.826 0.00 0.00 0.00 4.41
4056 4515 3.452474 GCATGATCGAGATATACCCAGC 58.548 50.000 0.00 0.00 0.00 4.85
4057 4516 3.378427 TCGCATGATCGAGATATACCCAG 59.622 47.826 0.00 0.00 34.09 4.45
4058 4517 3.128764 GTCGCATGATCGAGATATACCCA 59.871 47.826 0.00 0.00 39.34 4.51
4059 4518 3.696898 GTCGCATGATCGAGATATACCC 58.303 50.000 0.00 0.00 39.34 3.69
4060 4519 3.355270 CGTCGCATGATCGAGATATACC 58.645 50.000 0.00 0.00 39.34 2.73
4095 4554 5.310409 ACAGCCCTAAATATACACAGCAT 57.690 39.130 0.00 0.00 0.00 3.79
4168 4630 2.915659 CGGGTAGGCTCGGGCATA 60.916 66.667 10.74 2.26 40.87 3.14
4174 4636 0.179145 CAGTTACACGGGTAGGCTCG 60.179 60.000 0.00 0.00 45.67 5.03
4180 4642 2.025981 TCCTAGAGCAGTTACACGGGTA 60.026 50.000 0.00 0.00 0.00 3.69
4181 4643 1.183549 CCTAGAGCAGTTACACGGGT 58.816 55.000 0.00 0.00 0.00 5.28
4182 4644 1.471119 TCCTAGAGCAGTTACACGGG 58.529 55.000 0.00 0.00 0.00 5.28
4183 4645 2.688446 TGATCCTAGAGCAGTTACACGG 59.312 50.000 0.00 0.00 0.00 4.94
4184 4646 4.576216 ATGATCCTAGAGCAGTTACACG 57.424 45.455 0.00 0.00 29.44 4.49
4185 4647 6.987386 ACATATGATCCTAGAGCAGTTACAC 58.013 40.000 10.38 0.00 29.44 2.90
4186 4648 7.603180 AACATATGATCCTAGAGCAGTTACA 57.397 36.000 10.38 0.00 29.44 2.41
4187 4649 8.364142 AGAAACATATGATCCTAGAGCAGTTAC 58.636 37.037 10.38 0.00 29.44 2.50
4188 4650 8.484214 AGAAACATATGATCCTAGAGCAGTTA 57.516 34.615 10.38 0.00 29.44 2.24
4230 4698 1.556911 TGCATGAAGAGAGAACCTCCC 59.443 52.381 0.00 0.00 42.97 4.30
4231 4699 3.269178 CTTGCATGAAGAGAGAACCTCC 58.731 50.000 0.00 0.00 42.97 4.30
4271 4867 6.919662 AGTTTGCAGAAACATGAACACATAAG 59.080 34.615 0.00 0.00 43.51 1.73
4272 4868 6.804677 AGTTTGCAGAAACATGAACACATAA 58.195 32.000 0.00 0.00 43.51 1.90
4273 4869 6.389830 AGTTTGCAGAAACATGAACACATA 57.610 33.333 0.00 0.00 43.51 2.29
4274 4870 5.266733 AGTTTGCAGAAACATGAACACAT 57.733 34.783 0.00 0.00 43.51 3.21
4275 4871 4.717233 AGTTTGCAGAAACATGAACACA 57.283 36.364 0.00 0.00 43.51 3.72
4276 4872 5.458779 GGTAAGTTTGCAGAAACATGAACAC 59.541 40.000 0.00 0.00 43.51 3.32
4277 4873 5.126222 TGGTAAGTTTGCAGAAACATGAACA 59.874 36.000 0.00 0.00 43.51 3.18
4278 4874 5.587289 TGGTAAGTTTGCAGAAACATGAAC 58.413 37.500 0.00 0.00 43.51 3.18
4304 4904 8.627208 AATTTCTGAAGATAGTTCTTGAGCAA 57.373 30.769 0.00 0.00 41.41 3.91
4344 4944 3.753272 CAGATTACCAGGGTTCTGTGTTG 59.247 47.826 10.65 0.00 39.31 3.33
4383 4987 2.640826 TGTATTTTGGAACGGAGGGAGT 59.359 45.455 0.00 0.00 0.00 3.85
4384 4988 3.343941 TGTATTTTGGAACGGAGGGAG 57.656 47.619 0.00 0.00 0.00 4.30
4386 4990 4.270008 AGATTGTATTTTGGAACGGAGGG 58.730 43.478 0.00 0.00 0.00 4.30
4387 4991 6.995511 TTAGATTGTATTTTGGAACGGAGG 57.004 37.500 0.00 0.00 0.00 4.30
4388 4992 7.120726 AGGTTTAGATTGTATTTTGGAACGGAG 59.879 37.037 0.00 0.00 0.00 4.63
4389 4993 6.943718 AGGTTTAGATTGTATTTTGGAACGGA 59.056 34.615 0.00 0.00 0.00 4.69
4390 4994 7.153217 AGGTTTAGATTGTATTTTGGAACGG 57.847 36.000 0.00 0.00 0.00 4.44
4391 4995 7.753580 GGAAGGTTTAGATTGTATTTTGGAACG 59.246 37.037 0.00 0.00 0.00 3.95
4392 4996 8.581578 TGGAAGGTTTAGATTGTATTTTGGAAC 58.418 33.333 0.00 0.00 0.00 3.62
4393 4997 8.713708 TGGAAGGTTTAGATTGTATTTTGGAA 57.286 30.769 0.00 0.00 0.00 3.53
4394 4998 8.893563 ATGGAAGGTTTAGATTGTATTTTGGA 57.106 30.769 0.00 0.00 0.00 3.53
4399 5003 9.747898 TGTGTTATGGAAGGTTTAGATTGTATT 57.252 29.630 0.00 0.00 0.00 1.89
4400 5004 9.396022 CTGTGTTATGGAAGGTTTAGATTGTAT 57.604 33.333 0.00 0.00 0.00 2.29
4446 5050 7.763985 CCATCCCATCAGTTTTTGTTTTATACC 59.236 37.037 0.00 0.00 0.00 2.73
4452 5056 4.653341 TGTCCATCCCATCAGTTTTTGTTT 59.347 37.500 0.00 0.00 0.00 2.83
4454 5058 3.843422 TGTCCATCCCATCAGTTTTTGT 58.157 40.909 0.00 0.00 0.00 2.83
4465 5069 0.255890 GCTAAGCCTTGTCCATCCCA 59.744 55.000 0.00 0.00 0.00 4.37
4466 5070 0.548510 AGCTAAGCCTTGTCCATCCC 59.451 55.000 0.00 0.00 0.00 3.85
4468 5072 1.020437 GCAGCTAAGCCTTGTCCATC 58.980 55.000 0.00 0.00 0.00 3.51
4470 5074 4.722193 GCAGCTAAGCCTTGTCCA 57.278 55.556 0.00 0.00 0.00 4.02
4481 5098 1.545582 GTTTTGCAATGGAGGCAGCTA 59.454 47.619 0.00 0.00 43.05 3.32
4509 5156 8.232913 ACTGAAAATGCAACTTTTAGAGGTTA 57.767 30.769 17.85 0.00 0.00 2.85
4631 5317 0.988063 GACTCCTGGAGCTTCCCTTT 59.012 55.000 23.43 0.94 35.03 3.11
4757 5443 3.655810 GAGGAGGTCGCTGGTGCTG 62.656 68.421 0.00 0.00 36.97 4.41
4796 5482 2.034179 TGTGATATTAGAGGCGTCCACG 59.966 50.000 2.06 0.00 43.27 4.94
4828 5514 2.546778 ACGACGCCATTTACATCGATT 58.453 42.857 0.00 0.00 36.64 3.34
4969 5655 0.396695 TCCTCACGGGGTATCAGGAC 60.397 60.000 0.00 0.00 35.33 3.85
5023 5709 0.896923 GGCCTGATTGTTCATTGCCA 59.103 50.000 0.00 0.00 43.81 4.92
5026 5712 2.093921 TGCATGGCCTGATTGTTCATTG 60.094 45.455 3.32 0.00 0.00 2.82
5027 5713 2.181125 TGCATGGCCTGATTGTTCATT 58.819 42.857 3.32 0.00 0.00 2.57
5046 5732 1.069022 CAACTTTGACTGCCGACCATG 60.069 52.381 0.00 0.00 0.00 3.66
5079 5765 3.817709 AGCCTAGCACTTCAGAATCTC 57.182 47.619 0.00 0.00 0.00 2.75
5093 5779 1.105759 GCAATCCCAGGCAAGCCTAG 61.106 60.000 14.18 6.40 46.28 3.02
5193 5879 0.732571 ATCTAACGCCGTTGCCATTG 59.267 50.000 13.65 0.00 0.00 2.82
5232 5918 3.857549 TGGTCTCGTTTCTCAGATCAG 57.142 47.619 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.