Multiple sequence alignment - TraesCS7B01G439900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G439900 chr7B 100.000 4564 0 0 1 4564 705250317 705254880 0.000000e+00 8429.0
1 TraesCS7B01G439900 chr7A 88.851 3767 266 69 858 4564 705684814 705688486 0.000000e+00 4488.0
2 TraesCS7B01G439900 chr7A 91.146 768 55 7 2747 3511 34788300 34789057 0.000000e+00 1029.0
3 TraesCS7B01G439900 chr7A 90.950 221 17 3 2226 2444 34787618 34787837 1.240000e-75 294.0
4 TraesCS7B01G439900 chr7A 95.556 90 4 0 3481 3570 34789062 34789151 1.320000e-30 145.0
5 TraesCS7B01G439900 chr7D 92.170 1507 84 20 2232 3719 613869087 613870578 0.000000e+00 2098.0
6 TraesCS7B01G439900 chr7D 89.384 1413 95 13 842 2227 613867615 613868999 0.000000e+00 1727.0
7 TraesCS7B01G439900 chr7D 92.515 855 44 8 1 851 613865043 613865881 0.000000e+00 1206.0
8 TraesCS7B01G439900 chr7D 92.257 762 40 6 3809 4564 613870772 613871520 0.000000e+00 1062.0
9 TraesCS7B01G439900 chr1D 77.112 367 57 22 331 687 360883097 360882748 2.170000e-43 187.0
10 TraesCS7B01G439900 chr1D 73.744 438 80 24 220 641 393686251 393686669 6.160000e-29 139.0
11 TraesCS7B01G439900 chr1D 100.000 28 0 0 3657 3684 201833319 201833346 8.000000e-03 52.8
12 TraesCS7B01G439900 chr6A 75.743 404 70 26 34 423 602747636 602747247 1.300000e-40 178.0
13 TraesCS7B01G439900 chr6A 75.510 245 37 18 264 504 542699394 542699169 1.040000e-16 99.0
14 TraesCS7B01G439900 chr6A 100.000 29 0 0 3654 3682 182304802 182304830 2.000000e-03 54.7
15 TraesCS7B01G439900 chr1A 75.683 366 61 22 331 687 460552960 460552614 1.700000e-34 158.0
16 TraesCS7B01G439900 chr1A 100.000 28 0 0 3657 3684 98249499 98249526 8.000000e-03 52.8
17 TraesCS7B01G439900 chr1B 74.321 405 71 29 325 724 482944747 482944371 1.710000e-29 141.0
18 TraesCS7B01G439900 chr1B 94.118 34 2 0 3657 3690 258729906 258729873 8.000000e-03 52.8
19 TraesCS7B01G439900 chr3B 78.761 226 29 15 394 617 192878820 192879028 2.860000e-27 134.0
20 TraesCS7B01G439900 chr4D 81.006 179 23 8 334 510 80823253 80823422 1.030000e-26 132.0
21 TraesCS7B01G439900 chr4D 100.000 28 0 0 3657 3684 484399896 484399923 8.000000e-03 52.8
22 TraesCS7B01G439900 chr2D 80.000 190 28 9 437 622 560987489 560987672 1.030000e-26 132.0
23 TraesCS7B01G439900 chr2B 75.100 249 46 13 300 545 73667340 73667575 8.080000e-18 102.0
24 TraesCS7B01G439900 chr2B 100.000 29 0 0 3656 3684 529598720 529598692 2.000000e-03 54.7
25 TraesCS7B01G439900 chr5B 90.476 42 3 1 3651 3691 554791437 554791396 2.000000e-03 54.7
26 TraesCS7B01G439900 chr4B 100.000 29 0 0 3657 3685 127852218 127852190 2.000000e-03 54.7
27 TraesCS7B01G439900 chrUn 100.000 28 0 0 3657 3684 24265332 24265359 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G439900 chr7B 705250317 705254880 4563 False 8429.000000 8429 100.000000 1 4564 1 chr7B.!!$F1 4563
1 TraesCS7B01G439900 chr7A 705684814 705688486 3672 False 4488.000000 4488 88.851000 858 4564 1 chr7A.!!$F1 3706
2 TraesCS7B01G439900 chr7A 34787618 34789151 1533 False 489.333333 1029 92.550667 2226 3570 3 chr7A.!!$F2 1344
3 TraesCS7B01G439900 chr7D 613865043 613871520 6477 False 1523.250000 2098 91.581500 1 4564 4 chr7D.!!$F1 4563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
913 2661 1.185315 CCATTTTTCGGCCCAGACAT 58.815 50.0 0.0 0.0 0.0 3.06 F
1321 3086 0.108019 AAGAACACCAGGAACCGACC 59.892 55.0 0.0 0.0 0.0 4.79 F
2131 3936 0.531532 CCTGCCTGATGCTAACGGAG 60.532 60.0 0.0 0.0 42.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2784 4850 0.040058 TCCCAGTCCTGCAATGCATT 59.960 50.000 8.91 5.99 38.13 3.56 R
3077 5143 1.133792 CCAACCATGTCCTGATACCCC 60.134 57.143 0.00 0.00 0.00 4.95 R
3999 6262 0.104487 TTGGGTGCACAACAATGCTG 59.896 50.000 20.43 0.00 46.28 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 100 9.654417 ATCTGTGTAATGTAAAACAAACGTTAC 57.346 29.630 0.00 10.10 44.27 2.50
287 290 8.596293 ACTGTTTCCATAAATGTCCATGAAATT 58.404 29.630 0.00 0.00 0.00 1.82
508 511 6.303022 CACGTGTGCTCTAAAAATGTACATTG 59.697 38.462 21.46 9.33 0.00 2.82
512 515 7.329226 GTGTGCTCTAAAAATGTACATTGCATT 59.671 33.333 23.62 19.19 38.09 3.56
607 610 5.674933 AGAAAACCGTAGAAGCAAGAAAG 57.325 39.130 0.00 0.00 0.00 2.62
610 613 6.317893 AGAAAACCGTAGAAGCAAGAAAGAAA 59.682 34.615 0.00 0.00 0.00 2.52
724 729 7.793927 AAACCAAGAAACAACAAAAGAAACA 57.206 28.000 0.00 0.00 0.00 2.83
725 730 7.420184 AACCAAGAAACAACAAAAGAAACAG 57.580 32.000 0.00 0.00 0.00 3.16
726 731 5.931724 ACCAAGAAACAACAAAAGAAACAGG 59.068 36.000 0.00 0.00 0.00 4.00
727 732 5.351189 CCAAGAAACAACAAAAGAAACAGGG 59.649 40.000 0.00 0.00 0.00 4.45
728 733 5.084818 AGAAACAACAAAAGAAACAGGGG 57.915 39.130 0.00 0.00 0.00 4.79
729 734 4.775253 AGAAACAACAAAAGAAACAGGGGA 59.225 37.500 0.00 0.00 0.00 4.81
730 735 5.247337 AGAAACAACAAAAGAAACAGGGGAA 59.753 36.000 0.00 0.00 0.00 3.97
731 736 5.491323 AACAACAAAAGAAACAGGGGAAA 57.509 34.783 0.00 0.00 0.00 3.13
732 737 5.491323 ACAACAAAAGAAACAGGGGAAAA 57.509 34.783 0.00 0.00 0.00 2.29
733 738 5.870706 ACAACAAAAGAAACAGGGGAAAAA 58.129 33.333 0.00 0.00 0.00 1.94
769 774 2.028287 GCTGCAGCGCAATACTATTG 57.972 50.000 25.23 4.61 38.41 1.90
776 781 1.532868 GCGCAATACTATTGGCTCAGG 59.467 52.381 0.30 0.00 0.00 3.86
777 782 1.532868 CGCAATACTATTGGCTCAGGC 59.467 52.381 10.24 0.00 37.82 4.85
779 784 2.806745 GCAATACTATTGGCTCAGGCGA 60.807 50.000 10.24 0.00 39.81 5.54
913 2661 1.185315 CCATTTTTCGGCCCAGACAT 58.815 50.000 0.00 0.00 0.00 3.06
968 2716 2.163818 CGGCCCACGTATACAATGAT 57.836 50.000 3.32 0.00 37.93 2.45
1002 2750 3.047877 CGGTTCCCTGTTCGCACC 61.048 66.667 0.00 0.00 0.00 5.01
1003 2751 2.112297 GGTTCCCTGTTCGCACCA 59.888 61.111 0.00 0.00 0.00 4.17
1004 2752 1.966451 GGTTCCCTGTTCGCACCAG 60.966 63.158 0.00 0.00 0.00 4.00
1038 2801 2.752238 CTCTCCAGGCCGAGTCGT 60.752 66.667 12.31 0.00 0.00 4.34
1039 2802 2.750637 TCTCCAGGCCGAGTCGTC 60.751 66.667 12.31 0.00 0.00 4.20
1040 2803 3.062466 CTCCAGGCCGAGTCGTCA 61.062 66.667 12.31 0.00 0.00 4.35
1041 2804 3.057547 CTCCAGGCCGAGTCGTCAG 62.058 68.421 12.31 0.00 0.00 3.51
1042 2805 3.062466 CCAGGCCGAGTCGTCAGA 61.062 66.667 12.31 0.00 0.00 3.27
1043 2806 2.487428 CAGGCCGAGTCGTCAGAG 59.513 66.667 12.31 0.00 0.00 3.35
1044 2807 2.752238 AGGCCGAGTCGTCAGAGG 60.752 66.667 12.31 0.00 0.00 3.69
1045 2808 3.827898 GGCCGAGTCGTCAGAGGG 61.828 72.222 12.31 0.00 0.00 4.30
1046 2809 3.827898 GCCGAGTCGTCAGAGGGG 61.828 72.222 12.31 0.00 0.00 4.79
1047 2810 2.045242 CCGAGTCGTCAGAGGGGA 60.045 66.667 12.31 0.00 0.00 4.81
1048 2811 2.115911 CCGAGTCGTCAGAGGGGAG 61.116 68.421 12.31 0.00 0.00 4.30
1149 2912 1.226435 CTCTTCGAAGACCGCCTCG 60.226 63.158 23.74 8.73 34.32 4.63
1155 2918 3.398353 GAAGACCGCCTCGTCCTCG 62.398 68.421 0.00 0.00 32.91 4.63
1159 2922 4.477975 CCGCCTCGTCCTCGTCAC 62.478 72.222 0.00 0.00 38.33 3.67
1162 2925 3.812019 CCTCGTCCTCGTCACCCG 61.812 72.222 0.00 0.00 38.33 5.28
1163 2926 3.054503 CTCGTCCTCGTCACCCGT 61.055 66.667 0.00 0.00 37.94 5.28
1168 2931 4.065281 CCTCGTCACCCGTCACCC 62.065 72.222 0.00 0.00 37.94 4.61
1260 3024 1.764723 CATGTCCTGCTCATACCCTCA 59.235 52.381 0.00 0.00 0.00 3.86
1276 3040 2.746362 CCCTCAGTTCAGATCAAGCAAC 59.254 50.000 0.00 0.00 0.00 4.17
1321 3086 0.108019 AAGAACACCAGGAACCGACC 59.892 55.000 0.00 0.00 0.00 4.79
1324 3089 1.477685 AACACCAGGAACCGACCGAT 61.478 55.000 0.00 0.00 34.73 4.18
1329 3094 2.818274 GGAACCGACCGATGCCAC 60.818 66.667 0.00 0.00 0.00 5.01
1335 3100 2.528743 CGACCGATGCCACATCTGC 61.529 63.158 6.06 0.00 0.00 4.26
1337 3102 1.434622 GACCGATGCCACATCTGCAG 61.435 60.000 7.63 7.63 42.92 4.41
1352 3117 2.224079 TCTGCAGTTCAAATCTTGCGTC 59.776 45.455 14.67 0.00 0.00 5.19
1356 3121 3.303990 GCAGTTCAAATCTTGCGTCTTGA 60.304 43.478 0.00 0.00 0.00 3.02
1357 3122 4.614535 GCAGTTCAAATCTTGCGTCTTGAT 60.615 41.667 0.00 0.00 0.00 2.57
1369 3134 2.802816 GCGTCTTGATTGTGAACTGTCT 59.197 45.455 0.00 0.00 0.00 3.41
1412 3188 7.117236 GCCTGCAATATGTATGATGAAAATTGG 59.883 37.037 0.00 0.00 0.00 3.16
1413 3189 8.145767 CCTGCAATATGTATGATGAAAATTGGT 58.854 33.333 0.00 0.00 0.00 3.67
1453 3229 5.958321 AGGTCAGGAGAAGGAAAGATTTTT 58.042 37.500 0.00 0.00 0.00 1.94
1464 3240 7.448777 AGAAGGAAAGATTTTTAACTGGGAGAC 59.551 37.037 0.00 0.00 0.00 3.36
1788 3589 4.819761 GCAGCTGGCGATGGACGA 62.820 66.667 17.12 0.00 45.77 4.20
1813 3614 3.357203 AGTGTATGTCTGTCTCGTGGAT 58.643 45.455 0.00 0.00 0.00 3.41
1835 3636 6.073657 GGATGAAATGTGTTTTGTGGTGAATG 60.074 38.462 0.00 0.00 0.00 2.67
1939 3740 4.668636 ACAGGAAATATTTTGGGGACGAA 58.331 39.130 1.43 0.00 0.00 3.85
1952 3753 2.554564 GGGGACGAAAGGAATTCCAGTT 60.555 50.000 26.22 18.64 38.89 3.16
1982 3783 6.054860 ACAGAGGTGATGTGCTAATACTTT 57.945 37.500 0.00 0.00 0.00 2.66
1983 3784 6.476378 ACAGAGGTGATGTGCTAATACTTTT 58.524 36.000 0.00 0.00 0.00 2.27
1987 3788 7.885399 AGAGGTGATGTGCTAATACTTTTCTTT 59.115 33.333 0.00 0.00 0.00 2.52
2039 3843 3.369147 CGTAAAGAGCCATTGTCTCTGTG 59.631 47.826 0.00 0.00 40.51 3.66
2040 3844 3.498774 AAAGAGCCATTGTCTCTGTGT 57.501 42.857 0.00 0.00 40.51 3.72
2041 3845 2.758736 AGAGCCATTGTCTCTGTGTC 57.241 50.000 0.00 0.00 39.29 3.67
2042 3846 1.973515 AGAGCCATTGTCTCTGTGTCA 59.026 47.619 0.00 0.00 39.29 3.58
2070 3874 8.986929 AAAGGGAAATTAGATGATGTTCTAGG 57.013 34.615 0.00 0.00 30.20 3.02
2112 3917 9.155975 AGAAGTATCACATTGTCACTGTAATTC 57.844 33.333 0.00 0.00 0.00 2.17
2114 3919 7.624549 AGTATCACATTGTCACTGTAATTCCT 58.375 34.615 0.00 0.00 0.00 3.36
2131 3936 0.531532 CCTGCCTGATGCTAACGGAG 60.532 60.000 0.00 0.00 42.00 4.63
2171 3976 7.201410 CGTGCTACCTGTTATAGTTTACTTGTG 60.201 40.741 0.00 0.00 0.00 3.33
2185 3990 7.298122 AGTTTACTTGTGTAAGCATCATTTCG 58.702 34.615 5.79 0.00 40.71 3.46
2187 3992 5.940192 ACTTGTGTAAGCATCATTTCGAA 57.060 34.783 0.00 0.00 37.43 3.71
2189 3994 5.470098 ACTTGTGTAAGCATCATTTCGAAGT 59.530 36.000 0.00 0.00 37.43 3.01
2260 4149 5.429957 AAAGAGCTGACTCAATTGACAAC 57.570 39.130 3.38 0.00 46.09 3.32
2360 4249 6.375174 ACAGCATATTGAATGTTTGAGCACTA 59.625 34.615 0.00 0.00 0.00 2.74
2548 4517 3.113322 CGATCTGATGCATTTTGCCTTG 58.887 45.455 0.00 0.00 44.23 3.61
2601 4571 5.324832 TCAGAAAAGAGGGTGGAAATCTT 57.675 39.130 0.00 0.00 34.81 2.40
2724 4789 3.061322 GCTTGATGCAGCACATTCAAAA 58.939 40.909 2.94 0.00 39.84 2.44
2744 4809 8.189119 TCAAAATTTGAAGCCAAGTTATAGGT 57.811 30.769 5.87 0.00 36.59 3.08
2745 4810 8.087750 TCAAAATTTGAAGCCAAGTTATAGGTG 58.912 33.333 5.87 0.00 36.59 4.00
2756 4821 4.628661 AGTTATAGGTGTCCTCCCTTCT 57.371 45.455 0.00 0.00 34.61 2.85
2826 4892 3.857549 TGGTCTCGTTTCTCAGATCAG 57.142 47.619 0.00 0.00 0.00 2.90
2865 4931 0.732571 ATCTAACGCCGTTGCCATTG 59.267 50.000 13.65 0.00 0.00 2.82
2965 5031 1.105759 GCAATCCCAGGCAAGCCTAG 61.106 60.000 14.18 6.40 46.28 3.02
2979 5045 3.817709 AGCCTAGCACTTCAGAATCTC 57.182 47.619 0.00 0.00 0.00 2.75
3012 5078 1.069022 CAACTTTGACTGCCGACCATG 60.069 52.381 0.00 0.00 0.00 3.66
3031 5097 2.181125 TGCATGGCCTGATTGTTCATT 58.819 42.857 3.32 0.00 0.00 2.57
3032 5098 2.093921 TGCATGGCCTGATTGTTCATTG 60.094 45.455 3.32 0.00 0.00 2.82
3035 5101 0.896923 GGCCTGATTGTTCATTGCCA 59.103 50.000 0.00 0.00 43.81 4.92
3089 5155 0.396695 TCCTCACGGGGTATCAGGAC 60.397 60.000 0.00 0.00 35.33 3.85
3230 5296 2.546778 ACGACGCCATTTACATCGATT 58.453 42.857 0.00 0.00 36.64 3.34
3262 5328 2.034179 TGTGATATTAGAGGCGTCCACG 59.966 50.000 2.06 0.00 43.27 4.94
3301 5367 3.655810 GAGGAGGTCGCTGGTGCTG 62.656 68.421 0.00 0.00 36.97 4.41
3427 5493 0.988063 GACTCCTGGAGCTTCCCTTT 59.012 55.000 23.43 0.94 35.03 3.11
3549 5654 8.232913 ACTGAAAATGCAACTTTTAGAGGTTA 57.767 30.769 17.85 0.00 0.00 2.85
3577 5682 1.545582 GTTTTGCAATGGAGGCAGCTA 59.454 47.619 0.00 0.00 43.05 3.32
3588 5693 4.722193 GCAGCTAAGCCTTGTCCA 57.278 55.556 0.00 0.00 0.00 4.02
3604 5722 3.843422 TGTCCATCCCATCAGTTTTTGT 58.157 40.909 0.00 0.00 0.00 2.83
3606 5724 4.653341 TGTCCATCCCATCAGTTTTTGTTT 59.347 37.500 0.00 0.00 0.00 2.83
3612 5730 7.763985 CCATCCCATCAGTTTTTGTTTTATACC 59.236 37.037 0.00 0.00 0.00 2.73
3658 5776 9.396022 CTGTGTTATGGAAGGTTTAGATTGTAT 57.604 33.333 0.00 0.00 0.00 2.29
3664 5782 8.893563 ATGGAAGGTTTAGATTGTATTTTGGA 57.106 30.769 0.00 0.00 0.00 3.53
3665 5783 8.713708 TGGAAGGTTTAGATTGTATTTTGGAA 57.286 30.769 0.00 0.00 0.00 3.53
3666 5784 8.581578 TGGAAGGTTTAGATTGTATTTTGGAAC 58.418 33.333 0.00 0.00 0.00 3.62
3667 5785 7.753580 GGAAGGTTTAGATTGTATTTTGGAACG 59.246 37.037 0.00 0.00 0.00 3.95
3668 5786 7.153217 AGGTTTAGATTGTATTTTGGAACGG 57.847 36.000 0.00 0.00 0.00 4.44
3669 5787 6.943718 AGGTTTAGATTGTATTTTGGAACGGA 59.056 34.615 0.00 0.00 0.00 4.69
3670 5788 7.120726 AGGTTTAGATTGTATTTTGGAACGGAG 59.879 37.037 0.00 0.00 0.00 4.63
3671 5789 6.995511 TTAGATTGTATTTTGGAACGGAGG 57.004 37.500 0.00 0.00 0.00 4.30
3672 5790 4.270008 AGATTGTATTTTGGAACGGAGGG 58.730 43.478 0.00 0.00 0.00 4.30
3673 5791 3.791953 TTGTATTTTGGAACGGAGGGA 57.208 42.857 0.00 0.00 0.00 4.20
3674 5792 3.343941 TGTATTTTGGAACGGAGGGAG 57.656 47.619 0.00 0.00 0.00 4.30
3675 5793 2.640826 TGTATTTTGGAACGGAGGGAGT 59.359 45.455 0.00 0.00 0.00 3.85
3676 5794 3.839490 TGTATTTTGGAACGGAGGGAGTA 59.161 43.478 0.00 0.00 0.00 2.59
3714 5836 3.753272 CAGATTACCAGGGTTCTGTGTTG 59.247 47.826 10.65 0.00 39.31 3.33
3754 5876 8.627208 AATTTCTGAAGATAGTTCTTGAGCAA 57.373 30.769 0.00 0.00 41.41 3.91
3780 5906 5.587289 TGGTAAGTTTGCAGAAACATGAAC 58.413 37.500 0.00 0.00 43.51 3.18
3781 5907 5.126222 TGGTAAGTTTGCAGAAACATGAACA 59.874 36.000 0.00 0.00 43.51 3.18
3782 5908 5.458779 GGTAAGTTTGCAGAAACATGAACAC 59.541 40.000 0.00 0.00 43.51 3.32
3783 5909 4.717233 AGTTTGCAGAAACATGAACACA 57.283 36.364 0.00 0.00 43.51 3.72
3784 5910 5.266733 AGTTTGCAGAAACATGAACACAT 57.733 34.783 0.00 0.00 43.51 3.21
3785 5911 6.389830 AGTTTGCAGAAACATGAACACATA 57.610 33.333 0.00 0.00 43.51 2.29
3786 5912 6.804677 AGTTTGCAGAAACATGAACACATAA 58.195 32.000 0.00 0.00 43.51 1.90
3787 5913 6.919662 AGTTTGCAGAAACATGAACACATAAG 59.080 34.615 0.00 0.00 43.51 1.73
3827 6081 3.269178 CTTGCATGAAGAGAGAACCTCC 58.731 50.000 0.00 0.00 42.97 4.30
3828 6082 1.556911 TGCATGAAGAGAGAACCTCCC 59.443 52.381 0.00 0.00 42.97 4.30
3870 6130 8.484214 AGAAACATATGATCCTAGAGCAGTTA 57.516 34.615 10.38 0.00 29.44 2.24
3871 6131 8.364142 AGAAACATATGATCCTAGAGCAGTTAC 58.636 37.037 10.38 0.00 29.44 2.50
3872 6132 7.603180 AACATATGATCCTAGAGCAGTTACA 57.397 36.000 10.38 0.00 29.44 2.41
3873 6133 6.987386 ACATATGATCCTAGAGCAGTTACAC 58.013 40.000 10.38 0.00 29.44 2.90
3874 6134 4.576216 ATGATCCTAGAGCAGTTACACG 57.424 45.455 0.00 0.00 29.44 4.49
3875 6135 2.688446 TGATCCTAGAGCAGTTACACGG 59.312 50.000 0.00 0.00 0.00 4.94
3876 6136 1.471119 TCCTAGAGCAGTTACACGGG 58.529 55.000 0.00 0.00 0.00 5.28
3877 6137 1.183549 CCTAGAGCAGTTACACGGGT 58.816 55.000 0.00 0.00 0.00 5.28
3878 6138 2.025981 TCCTAGAGCAGTTACACGGGTA 60.026 50.000 0.00 0.00 0.00 3.69
3884 6144 0.179145 CAGTTACACGGGTAGGCTCG 60.179 60.000 0.00 0.00 45.67 5.03
3890 6150 2.915659 CGGGTAGGCTCGGGCATA 60.916 66.667 10.74 2.26 40.87 3.14
3963 6226 5.310409 ACAGCCCTAAATATACACAGCAT 57.690 39.130 0.00 0.00 0.00 3.79
3998 6261 3.355270 CGTCGCATGATCGAGATATACC 58.645 50.000 0.00 0.00 39.34 2.73
3999 6262 3.696898 GTCGCATGATCGAGATATACCC 58.303 50.000 0.00 0.00 39.34 3.69
4000 6263 3.128764 GTCGCATGATCGAGATATACCCA 59.871 47.826 0.00 0.00 39.34 4.51
4001 6264 3.378427 TCGCATGATCGAGATATACCCAG 59.622 47.826 0.00 0.00 34.09 4.45
4002 6265 3.452474 GCATGATCGAGATATACCCAGC 58.548 50.000 0.00 0.00 0.00 4.85
4003 6266 3.118992 GCATGATCGAGATATACCCAGCA 60.119 47.826 0.00 0.00 0.00 4.41
4004 6267 4.442612 GCATGATCGAGATATACCCAGCAT 60.443 45.833 0.00 0.00 0.00 3.79
4006 6269 5.077134 TGATCGAGATATACCCAGCATTG 57.923 43.478 0.00 0.00 0.00 2.82
4007 6270 4.528206 TGATCGAGATATACCCAGCATTGT 59.472 41.667 0.00 0.00 0.00 2.71
4008 6271 4.955811 TCGAGATATACCCAGCATTGTT 57.044 40.909 0.00 0.00 0.00 2.83
4009 6272 4.631131 TCGAGATATACCCAGCATTGTTG 58.369 43.478 0.00 0.00 0.00 3.33
4010 6273 4.100963 TCGAGATATACCCAGCATTGTTGT 59.899 41.667 0.00 0.00 0.00 3.32
4011 6274 4.212004 CGAGATATACCCAGCATTGTTGTG 59.788 45.833 0.00 0.00 0.00 3.33
4209 6472 0.389817 TTGTGATGCTCTTCCCGACG 60.390 55.000 0.00 0.00 0.00 5.12
4212 6475 0.108804 TGATGCTCTTCCCGACGAAC 60.109 55.000 0.00 0.00 0.00 3.95
4260 6523 1.414181 CCTATGGCGATGAACAGAGGT 59.586 52.381 0.00 0.00 40.34 3.85
4263 6526 0.976641 TGGCGATGAACAGAGGTCTT 59.023 50.000 0.00 0.00 0.00 3.01
4344 6607 2.217038 GCTCACCACCTCCACCTCA 61.217 63.158 0.00 0.00 0.00 3.86
4383 6646 2.970974 GCACACTTCGCCAAGGCTC 61.971 63.158 9.73 0.00 39.32 4.70
4386 6649 1.166531 ACACTTCGCCAAGGCTCAAC 61.167 55.000 9.73 0.00 39.32 3.18
4471 6734 3.775654 CCCCGCCTCTCTTTCGCT 61.776 66.667 0.00 0.00 0.00 4.93
4479 6742 0.649475 CTCTCTTTCGCTGCCATTCG 59.351 55.000 0.00 0.00 0.00 3.34
4485 6748 4.520846 CGCTGCCATTCGAACCGC 62.521 66.667 0.00 5.59 0.00 5.68
4500 6763 2.252260 CGCGGGCTTGAAGTGTTG 59.748 61.111 0.00 0.00 0.00 3.33
4527 6790 1.133513 AGCCTCACAAATTGTCCCACA 60.134 47.619 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
210 213 9.292195 TCTTTTAATGGAAATAAACGTTCTCCT 57.708 29.630 0.00 0.00 0.00 3.69
508 511 7.010023 CACGTGTCTACTTTTTCTTAGAATGC 58.990 38.462 7.58 0.00 0.00 3.56
512 515 7.259882 TCAACACGTGTCTACTTTTTCTTAGA 58.740 34.615 23.61 0.00 0.00 2.10
567 570 7.536964 CGGTTTTCTTTGCTTTTCATTTTGTTT 59.463 29.630 0.00 0.00 0.00 2.83
568 571 7.020602 CGGTTTTCTTTGCTTTTCATTTTGTT 58.979 30.769 0.00 0.00 0.00 2.83
569 572 6.148645 ACGGTTTTCTTTGCTTTTCATTTTGT 59.851 30.769 0.00 0.00 0.00 2.83
570 573 6.541969 ACGGTTTTCTTTGCTTTTCATTTTG 58.458 32.000 0.00 0.00 0.00 2.44
704 709 5.351189 CCCCTGTTTCTTTTGTTGTTTCTTG 59.649 40.000 0.00 0.00 0.00 3.02
730 735 2.140717 CTTCGCTCTGGTACGGTTTTT 58.859 47.619 0.00 0.00 35.30 1.94
731 736 1.792006 CTTCGCTCTGGTACGGTTTT 58.208 50.000 0.00 0.00 35.30 2.43
732 737 0.669625 GCTTCGCTCTGGTACGGTTT 60.670 55.000 0.00 0.00 35.30 3.27
733 738 1.080025 GCTTCGCTCTGGTACGGTT 60.080 57.895 0.00 0.00 35.30 4.44
734 739 1.977544 AGCTTCGCTCTGGTACGGT 60.978 57.895 0.00 0.00 30.62 4.83
735 740 1.517257 CAGCTTCGCTCTGGTACGG 60.517 63.158 0.00 0.00 36.40 4.02
736 741 2.161486 GCAGCTTCGCTCTGGTACG 61.161 63.158 0.00 0.00 36.40 3.67
737 742 1.079819 TGCAGCTTCGCTCTGGTAC 60.080 57.895 0.00 0.00 36.40 3.34
756 761 1.532868 CCTGAGCCAATAGTATTGCGC 59.467 52.381 16.17 18.50 0.00 6.09
760 765 3.393089 CTCGCCTGAGCCAATAGTATT 57.607 47.619 0.00 0.00 34.96 1.89
824 829 1.320507 TGCTATATGTCGCCCGTACA 58.679 50.000 0.00 0.00 0.00 2.90
991 2739 3.730761 GCTGCTGGTGCGAACAGG 61.731 66.667 0.00 0.00 43.34 4.00
1002 2750 2.436292 GAGAGGTGGCTGCTGCTG 60.436 66.667 15.64 0.77 39.59 4.41
1003 2751 2.607134 AGAGAGGTGGCTGCTGCT 60.607 61.111 15.64 0.00 39.59 4.24
1004 2752 2.125188 GAGAGAGGTGGCTGCTGC 60.125 66.667 7.10 7.10 38.76 5.25
1134 2897 2.564975 GACGAGGCGGTCTTCGAA 59.435 61.111 0.00 0.00 42.43 3.71
1155 2918 3.703127 GAGGGGGTGACGGGTGAC 61.703 72.222 0.00 0.00 0.00 3.67
1289 3054 4.380531 TGGTGTTCTTTGAGACTAAGCTG 58.619 43.478 0.00 0.00 0.00 4.24
1321 3086 0.376152 GAACTGCAGATGTGGCATCG 59.624 55.000 23.35 0.00 41.06 3.84
1324 3089 1.689984 TTTGAACTGCAGATGTGGCA 58.310 45.000 23.35 0.00 39.32 4.92
1329 3094 3.168963 CGCAAGATTTGAACTGCAGATG 58.831 45.455 23.35 5.89 43.02 2.90
1335 3100 4.472691 TCAAGACGCAAGATTTGAACTG 57.527 40.909 0.00 0.00 39.11 3.16
1337 3102 5.116074 CACAATCAAGACGCAAGATTTGAAC 59.884 40.000 0.00 0.00 42.73 3.18
1352 3117 7.009999 GCATCTACTAGACAGTTCACAATCAAG 59.990 40.741 0.00 0.00 36.14 3.02
1356 3121 5.423610 AGGCATCTACTAGACAGTTCACAAT 59.576 40.000 0.00 0.00 36.14 2.71
1357 3122 4.772624 AGGCATCTACTAGACAGTTCACAA 59.227 41.667 0.00 0.00 36.14 3.33
1369 3134 4.141505 TGCAGGCAATTTAGGCATCTACTA 60.142 41.667 0.00 0.00 36.37 1.82
1412 3188 6.404954 CCTGACCTCAAGAACTAAGTAGCTAC 60.405 46.154 16.43 16.43 0.00 3.58
1413 3189 5.652891 CCTGACCTCAAGAACTAAGTAGCTA 59.347 44.000 0.00 0.00 0.00 3.32
1419 3195 5.337169 CCTTCTCCTGACCTCAAGAACTAAG 60.337 48.000 0.00 0.00 0.00 2.18
1420 3196 4.528596 CCTTCTCCTGACCTCAAGAACTAA 59.471 45.833 0.00 0.00 0.00 2.24
1453 3229 3.515502 CAGACCATTCTGTCTCCCAGTTA 59.484 47.826 0.00 0.00 43.63 2.24
1557 3358 2.756283 ACCGAGCCGAGGAGGAAG 60.756 66.667 0.00 0.00 45.00 3.46
1671 3472 1.522092 CTCCTTCATAGGTGCCGCA 59.478 57.895 0.00 0.00 42.60 5.69
1677 3478 2.444256 GCGGGGCTCCTTCATAGGT 61.444 63.158 0.00 0.00 42.60 3.08
1788 3589 2.558795 ACGAGACAGACATACACTTGCT 59.441 45.455 0.00 0.00 0.00 3.91
1813 3614 5.579904 CACATTCACCACAAAACACATTTCA 59.420 36.000 0.00 0.00 0.00 2.69
1835 3636 3.214328 AGGAAACATGGTCAGAACACAC 58.786 45.455 0.00 0.00 0.00 3.82
1939 3740 4.792068 TGTGTTCAGAACTGGAATTCCTT 58.208 39.130 24.73 12.15 36.82 3.36
1952 3753 2.548707 GCACATCACCTCTGTGTTCAGA 60.549 50.000 5.45 0.00 46.85 3.27
1982 3783 8.359642 CCATCATCAAGTAAACAAAGGAAAGAA 58.640 33.333 0.00 0.00 0.00 2.52
1983 3784 7.505585 ACCATCATCAAGTAAACAAAGGAAAGA 59.494 33.333 0.00 0.00 0.00 2.52
1987 3788 7.942341 ACTAACCATCATCAAGTAAACAAAGGA 59.058 33.333 0.00 0.00 0.00 3.36
2000 3801 6.693466 TCTTTACGACAACTAACCATCATCA 58.307 36.000 0.00 0.00 0.00 3.07
2001 3802 6.237861 GCTCTTTACGACAACTAACCATCATC 60.238 42.308 0.00 0.00 0.00 2.92
2002 3803 5.581085 GCTCTTTACGACAACTAACCATCAT 59.419 40.000 0.00 0.00 0.00 2.45
2131 3936 3.184581 GGTAGCACGAATATAGCTGTTGC 59.815 47.826 0.00 0.00 39.30 4.17
2171 3976 5.786401 ACAGACTTCGAAATGATGCTTAC 57.214 39.130 10.63 0.00 0.00 2.34
2187 3992 9.662947 ACGGTAGCTTAAATTAAATAACAGACT 57.337 29.630 0.00 0.00 0.00 3.24
2210 4015 5.840940 AACATCTCGAAAGAAAGTAACGG 57.159 39.130 0.00 0.00 41.32 4.44
2252 4140 1.002468 GCTGTCTGCAACGTTGTCAAT 60.002 47.619 27.78 0.00 42.31 2.57
2468 4405 0.809241 CGGTCTTGAGGCAGATCAGC 60.809 60.000 0.60 0.60 0.00 4.26
2485 4429 8.203937 TGTGGTAATTAAACAATCATAGTCGG 57.796 34.615 0.81 0.00 0.00 4.79
2548 4517 5.869753 ACACAAGATATGTCAGAAGCAAC 57.130 39.130 0.00 0.00 41.46 4.17
2601 4571 4.581409 TGTATAGCAATACGTCCTGCACTA 59.419 41.667 20.24 10.40 40.84 2.74
2681 4746 4.707105 CCATCAACCAGTCAGCATACATA 58.293 43.478 0.00 0.00 0.00 2.29
2724 4789 5.652452 GGACACCTATAACTTGGCTTCAAAT 59.348 40.000 0.00 0.00 0.00 2.32
2742 4807 3.519913 ACTGATTTAGAAGGGAGGACACC 59.480 47.826 0.00 0.00 0.00 4.16
2744 4809 5.843019 AAACTGATTTAGAAGGGAGGACA 57.157 39.130 0.00 0.00 0.00 4.02
2745 4810 6.149640 GTCAAAACTGATTTAGAAGGGAGGAC 59.850 42.308 0.00 0.00 0.00 3.85
2784 4850 0.040058 TCCCAGTCCTGCAATGCATT 59.960 50.000 8.91 5.99 38.13 3.56
2826 4892 4.120331 GCGCACCATGGCCTTCAC 62.120 66.667 13.04 0.00 0.00 3.18
2865 4931 7.985184 TGATAGGACTGTGTATGGAAATGTTAC 59.015 37.037 0.00 0.00 0.00 2.50
2965 5031 4.999950 TCAGGAAAAGAGATTCTGAAGTGC 59.000 41.667 0.00 0.00 0.00 4.40
2979 5045 5.461078 CAGTCAAAGTTGCAATCAGGAAAAG 59.539 40.000 0.59 0.00 0.00 2.27
3012 5078 2.546778 CAATGAACAATCAGGCCATGC 58.453 47.619 5.01 0.00 39.39 4.06
3031 5097 4.348754 TGTCCTCATCTAATGATCATGGCA 59.651 41.667 9.46 0.00 38.85 4.92
3032 5098 4.903054 TGTCCTCATCTAATGATCATGGC 58.097 43.478 9.46 0.00 38.85 4.40
3035 5101 6.558014 AGTCCTTGTCCTCATCTAATGATCAT 59.442 38.462 1.18 1.18 38.85 2.45
3077 5143 1.133792 CCAACCATGTCCTGATACCCC 60.134 57.143 0.00 0.00 0.00 4.95
3089 5155 3.389925 ACATGCAGAAAACCAACCATG 57.610 42.857 0.00 0.00 36.90 3.66
3262 5328 3.248602 TCTTTCGCAGCTTCAGAGAAAAC 59.751 43.478 3.68 0.00 31.55 2.43
3301 5367 3.056328 GCCTGGTTCAGCCGTTCC 61.056 66.667 0.00 0.00 41.21 3.62
3427 5493 3.157881 CGGATGCTACCCTCTATTCTCA 58.842 50.000 0.00 0.00 0.00 3.27
3549 5654 4.136051 CCTCCATTGCAAAACCAAAACAT 58.864 39.130 1.71 0.00 0.00 2.71
3577 5682 1.002069 TGATGGGATGGACAAGGCTT 58.998 50.000 0.00 0.00 0.00 4.35
3583 5688 3.843422 ACAAAAACTGATGGGATGGACA 58.157 40.909 0.00 0.00 0.00 4.02
3584 5689 4.871933 AACAAAAACTGATGGGATGGAC 57.128 40.909 0.00 0.00 0.00 4.02
3585 5690 5.885449 AAAACAAAAACTGATGGGATGGA 57.115 34.783 0.00 0.00 0.00 3.41
3587 5692 8.310382 TGGTATAAAACAAAAACTGATGGGATG 58.690 33.333 0.00 0.00 0.00 3.51
3588 5693 8.311109 GTGGTATAAAACAAAAACTGATGGGAT 58.689 33.333 0.00 0.00 0.00 3.85
3639 5757 8.893563 TCCAAAATACAATCTAAACCTTCCAT 57.106 30.769 0.00 0.00 0.00 3.41
3642 5760 7.753580 CCGTTCCAAAATACAATCTAAACCTTC 59.246 37.037 0.00 0.00 0.00 3.46
3658 5776 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3660 5778 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
3661 5779 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
3662 5780 1.481871 TCATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
3663 5781 4.810790 CATATCATGTACTCCCTCCGTTC 58.189 47.826 0.00 0.00 0.00 3.95
3664 5782 3.006967 GCATATCATGTACTCCCTCCGTT 59.993 47.826 0.00 0.00 0.00 4.44
3665 5783 2.563179 GCATATCATGTACTCCCTCCGT 59.437 50.000 0.00 0.00 0.00 4.69
3666 5784 2.828520 AGCATATCATGTACTCCCTCCG 59.171 50.000 0.00 0.00 0.00 4.63
3667 5785 3.580458 ACAGCATATCATGTACTCCCTCC 59.420 47.826 0.00 0.00 0.00 4.30
3668 5786 4.881019 ACAGCATATCATGTACTCCCTC 57.119 45.455 0.00 0.00 0.00 4.30
3669 5787 5.602561 TGTTACAGCATATCATGTACTCCCT 59.397 40.000 0.00 0.00 31.83 4.20
3670 5788 5.853936 TGTTACAGCATATCATGTACTCCC 58.146 41.667 0.00 0.00 31.83 4.30
3671 5789 6.749139 TCTGTTACAGCATATCATGTACTCC 58.251 40.000 7.61 0.00 31.83 3.85
3672 5790 8.824159 AATCTGTTACAGCATATCATGTACTC 57.176 34.615 7.61 0.00 31.83 2.59
3673 5791 9.698309 GTAATCTGTTACAGCATATCATGTACT 57.302 33.333 7.61 0.00 39.95 2.73
3674 5792 8.926710 GGTAATCTGTTACAGCATATCATGTAC 58.073 37.037 7.61 1.91 41.59 2.90
3675 5793 8.646900 TGGTAATCTGTTACAGCATATCATGTA 58.353 33.333 7.61 0.00 41.59 2.29
3676 5794 7.508687 TGGTAATCTGTTACAGCATATCATGT 58.491 34.615 7.61 0.00 41.59 3.21
3730 5852 8.627208 TTTGCTCAAGAACTATCTTCAGAAAT 57.373 30.769 0.00 0.00 44.11 2.17
3731 5853 8.627208 ATTTGCTCAAGAACTATCTTCAGAAA 57.373 30.769 0.00 0.00 44.11 2.52
3733 5855 7.120285 CCAATTTGCTCAAGAACTATCTTCAGA 59.880 37.037 0.00 0.00 44.11 3.27
3734 5856 7.094463 ACCAATTTGCTCAAGAACTATCTTCAG 60.094 37.037 0.00 0.00 44.11 3.02
3736 5858 7.150783 ACCAATTTGCTCAAGAACTATCTTC 57.849 36.000 0.00 0.00 44.11 2.87
3737 5859 8.635765 TTACCAATTTGCTCAAGAACTATCTT 57.364 30.769 0.00 0.00 46.91 2.40
3738 5860 7.885399 ACTTACCAATTTGCTCAAGAACTATCT 59.115 33.333 8.81 0.00 37.57 1.98
3739 5861 8.045176 ACTTACCAATTTGCTCAAGAACTATC 57.955 34.615 8.81 0.00 0.00 2.08
3740 5862 8.409358 AACTTACCAATTTGCTCAAGAACTAT 57.591 30.769 8.81 0.00 0.00 2.12
3741 5863 7.817418 AACTTACCAATTTGCTCAAGAACTA 57.183 32.000 8.81 0.00 0.00 2.24
3742 5864 6.715347 AACTTACCAATTTGCTCAAGAACT 57.285 33.333 8.81 0.00 0.00 3.01
3743 5865 7.165427 CAAACTTACCAATTTGCTCAAGAAC 57.835 36.000 8.81 0.00 0.00 3.01
3752 5874 6.900568 TGTTTCTGCAAACTTACCAATTTG 57.099 33.333 3.11 0.00 42.29 2.32
3754 5876 6.815089 TCATGTTTCTGCAAACTTACCAATT 58.185 32.000 3.11 0.00 42.29 2.32
3827 6081 3.165058 TCTAGAAGCATGCAACTACGG 57.835 47.619 21.98 11.23 0.00 4.02
3828 6082 4.388773 TGTTTCTAGAAGCATGCAACTACG 59.611 41.667 21.98 14.53 0.00 3.51
3872 6132 3.744003 TATGCCCGAGCCTACCCGT 62.744 63.158 0.00 0.00 38.69 5.28
3873 6133 2.915659 TATGCCCGAGCCTACCCG 60.916 66.667 0.00 0.00 38.69 5.28
3874 6134 1.837499 AGTATGCCCGAGCCTACCC 60.837 63.158 0.87 0.00 40.00 3.69
3875 6135 1.113517 TCAGTATGCCCGAGCCTACC 61.114 60.000 0.87 0.00 40.00 3.18
3876 6136 0.315568 CTCAGTATGCCCGAGCCTAC 59.684 60.000 0.00 0.00 39.59 3.18
3877 6137 0.106167 ACTCAGTATGCCCGAGCCTA 60.106 55.000 0.00 0.00 38.69 3.93
3878 6138 0.978146 AACTCAGTATGCCCGAGCCT 60.978 55.000 0.00 0.00 38.69 4.58
3884 6144 1.661341 CTCTGCAACTCAGTATGCCC 58.339 55.000 8.82 0.00 43.32 5.36
3890 6150 6.552445 AATTATCTACCTCTGCAACTCAGT 57.448 37.500 0.00 0.00 43.32 3.41
3905 6165 8.527810 CCTTGCCAAAACCTTGTAAATTATCTA 58.472 33.333 0.00 0.00 0.00 1.98
3963 6226 0.303493 GCGACGCTTTGAACAAGTCA 59.697 50.000 13.73 0.00 32.57 3.41
3998 6261 1.005867 GGGTGCACAACAATGCTGG 60.006 57.895 20.43 0.00 46.28 4.85
3999 6262 0.104487 TTGGGTGCACAACAATGCTG 59.896 50.000 20.43 0.00 46.28 4.41
4000 6263 2.514129 TTGGGTGCACAACAATGCT 58.486 47.368 20.43 0.00 46.28 3.79
4007 6270 0.829333 AAGCAATGTTGGGTGCACAA 59.171 45.000 20.43 1.81 43.42 3.33
4008 6271 0.829333 AAAGCAATGTTGGGTGCACA 59.171 45.000 20.43 0.00 43.42 4.57
4009 6272 1.598601 CAAAAGCAATGTTGGGTGCAC 59.401 47.619 8.80 8.80 43.42 4.57
4010 6273 1.950828 CAAAAGCAATGTTGGGTGCA 58.049 45.000 0.00 0.00 43.42 4.57
4011 6274 0.587768 GCAAAAGCAATGTTGGGTGC 59.412 50.000 0.00 0.00 41.22 5.01
4260 6523 0.988832 ACTTCCATTGGGCGGTAAGA 59.011 50.000 2.09 0.00 0.00 2.10
4263 6526 0.912487 AGGACTTCCATTGGGCGGTA 60.912 55.000 2.09 0.00 38.89 4.02
4344 6607 3.249189 TGCTTGGCCGACCCTTCT 61.249 61.111 0.00 0.00 33.59 2.85
4383 6646 0.178992 TGACCTTCCCTGGCAAGTTG 60.179 55.000 0.00 0.00 0.00 3.16
4386 6649 0.178992 TTGTGACCTTCCCTGGCAAG 60.179 55.000 0.00 0.00 0.00 4.01
4455 6718 2.510238 CAGCGAAAGAGAGGCGGG 60.510 66.667 0.00 0.00 0.00 6.13
4479 6742 2.668550 ACTTCAAGCCCGCGGTTC 60.669 61.111 26.12 15.59 0.00 3.62
4485 6748 0.310854 GAACCAACACTTCAAGCCCG 59.689 55.000 0.00 0.00 0.00 6.13
4500 6763 2.887152 ACAATTTGTGAGGCTGAGAACC 59.113 45.455 0.15 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.