Multiple sequence alignment - TraesCS7B01G439700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G439700 chr7B 100.000 3677 0 0 1 3677 705109038 705112714 0.000000e+00 6791.0
1 TraesCS7B01G439700 chr7B 93.908 952 58 0 954 1905 705128018 705127067 0.000000e+00 1437.0
2 TraesCS7B01G439700 chr7B 89.514 658 64 4 2004 2657 705126998 705126342 0.000000e+00 828.0
3 TraesCS7B01G439700 chr7B 77.829 433 69 17 2172 2601 704290594 704291002 3.670000e-60 243.0
4 TraesCS7B01G439700 chr7B 97.826 46 1 0 1943 1988 648364973 648365018 3.040000e-11 80.5
5 TraesCS7B01G439700 chr7D 91.701 2458 128 30 864 3295 613799220 613801627 0.000000e+00 3339.0
6 TraesCS7B01G439700 chr7D 88.446 1203 89 20 732 1905 613828398 613827217 0.000000e+00 1406.0
7 TraesCS7B01G439700 chr7D 89.970 658 61 4 2004 2657 613827148 613826492 0.000000e+00 845.0
8 TraesCS7B01G439700 chr7D 86.243 189 20 5 604 787 613798768 613798955 2.240000e-47 200.0
9 TraesCS7B01G439700 chr7D 74.771 547 82 32 2009 2545 613693347 613692847 1.040000e-45 195.0
10 TraesCS7B01G439700 chr7D 92.708 96 7 0 1 96 613797757 613797852 4.950000e-29 139.0
11 TraesCS7B01G439700 chr7D 100.000 59 0 0 3569 3627 613802777 613802835 3.880000e-20 110.0
12 TraesCS7B01G439700 chr7D 97.143 35 1 0 3512 3546 613802604 613802638 3.970000e-05 60.2
13 TraesCS7B01G439700 chr7D 100.000 28 0 0 776 803 613799193 613799220 7.000000e-03 52.8
14 TraesCS7B01G439700 chr7A 91.474 2463 141 30 866 3295 705678111 705680537 0.000000e+00 3321.0
15 TraesCS7B01G439700 chr7A 91.898 432 24 4 864 1284 705595069 705595500 8.790000e-166 593.0
16 TraesCS7B01G439700 chr7A 93.671 158 5 4 3361 3513 705680534 705680691 7.940000e-57 231.0
17 TraesCS7B01G439700 chr7A 73.732 552 89 33 2009 2550 705417688 705417183 8.170000e-37 165.0
18 TraesCS7B01G439700 chr7A 89.189 111 12 0 646 756 705677684 705677794 4.950000e-29 139.0
19 TraesCS7B01G439700 chr7A 91.579 95 8 0 1 95 705669392 705669486 8.290000e-27 132.0
20 TraesCS7B01G439700 chr5B 87.300 937 104 9 972 1905 586534218 586535142 0.000000e+00 1057.0
21 TraesCS7B01G439700 chr5B 85.063 636 83 5 2008 2643 586535344 586535967 4.000000e-179 638.0
22 TraesCS7B01G439700 chr5B 95.918 49 2 0 3294 3342 163102229 163102277 3.040000e-11 80.5
23 TraesCS7B01G439700 chr5D 86.428 781 86 12 975 1743 478689772 478689000 0.000000e+00 837.0
24 TraesCS7B01G439700 chr5D 83.460 659 89 12 2007 2655 478598797 478599445 2.440000e-166 595.0
25 TraesCS7B01G439700 chr5D 85.316 538 79 0 2008 2545 478688986 478688449 1.150000e-154 556.0
26 TraesCS7B01G439700 chr5D 95.918 49 2 0 3294 3342 234857584 234857536 3.040000e-11 80.5
27 TraesCS7B01G439700 chr5D 95.918 49 2 0 3294 3342 482889167 482889119 3.040000e-11 80.5
28 TraesCS7B01G439700 chr1A 82.656 911 128 25 1010 1902 560881602 560880704 0.000000e+00 780.0
29 TraesCS7B01G439700 chr1A 75.822 608 116 17 2010 2615 560841499 560842077 2.800000e-71 279.0
30 TraesCS7B01G439700 chr1D 81.888 911 137 22 1009 1902 467863386 467862487 0.000000e+00 743.0
31 TraesCS7B01G439700 chr1D 74.170 542 100 21 2009 2545 337218216 337218722 4.850000e-44 189.0
32 TraesCS7B01G439700 chr1D 89.796 49 4 1 557 604 481934740 481934692 1.100000e-05 62.1
33 TraesCS7B01G439700 chr3A 83.767 807 104 16 1109 1909 52963186 52963971 0.000000e+00 739.0
34 TraesCS7B01G439700 chr3A 95.918 49 2 0 3294 3342 335470603 335470651 3.040000e-11 80.5
35 TraesCS7B01G439700 chr2A 79.184 245 37 2 2712 2944 755117008 755117250 1.370000e-34 158.0
36 TraesCS7B01G439700 chr6A 81.522 184 32 1 2761 2944 91425349 91425530 2.290000e-32 150.0
37 TraesCS7B01G439700 chr6B 85.821 134 10 5 3361 3488 644729739 644729869 2.300000e-27 134.0
38 TraesCS7B01G439700 chr6B 100.000 45 0 0 1944 1988 560663938 560663982 2.350000e-12 84.2
39 TraesCS7B01G439700 chr6B 94.000 50 3 0 1939 1988 76388318 76388367 3.940000e-10 76.8
40 TraesCS7B01G439700 chr6B 95.455 44 2 0 1945 1988 78448275 78448232 1.830000e-08 71.3
41 TraesCS7B01G439700 chr5A 80.000 185 33 3 2761 2944 377925021 377924840 2.300000e-27 134.0
42 TraesCS7B01G439700 chr5A 84.507 142 9 3 3371 3512 617129399 617129527 1.070000e-25 128.0
43 TraesCS7B01G439700 chr5A 95.918 49 2 0 3294 3342 135063744 135063696 3.040000e-11 80.5
44 TraesCS7B01G439700 chr1B 94.340 53 3 0 3291 3343 126284096 126284044 8.460000e-12 82.4
45 TraesCS7B01G439700 chr1B 95.918 49 2 0 3294 3342 388599719 388599767 3.040000e-11 80.5
46 TraesCS7B01G439700 chr1B 97.727 44 1 0 1945 1988 8164816 8164859 3.940000e-10 76.8
47 TraesCS7B01G439700 chr4B 96.000 50 1 1 1940 1988 236957584 236957535 3.040000e-11 80.5
48 TraesCS7B01G439700 chr2D 95.918 49 2 0 3294 3342 612498200 612498152 3.040000e-11 80.5
49 TraesCS7B01G439700 chr6D 94.231 52 2 1 3292 3342 249994867 249994816 1.090000e-10 78.7
50 TraesCS7B01G439700 chr3B 97.727 44 1 0 1945 1988 344892 344849 3.940000e-10 76.8
51 TraesCS7B01G439700 chr2B 97.727 44 1 0 1945 1988 26906787 26906830 3.940000e-10 76.8
52 TraesCS7B01G439700 chr3D 95.455 44 2 0 1945 1988 501087621 501087664 1.830000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G439700 chr7B 705109038 705112714 3676 False 6791.000000 6791 100.000000 1 3677 1 chr7B.!!$F3 3676
1 TraesCS7B01G439700 chr7B 705126342 705128018 1676 True 1132.500000 1437 91.711000 954 2657 2 chr7B.!!$R1 1703
2 TraesCS7B01G439700 chr7D 613826492 613828398 1906 True 1125.500000 1406 89.208000 732 2657 2 chr7D.!!$R2 1925
3 TraesCS7B01G439700 chr7D 613797757 613802835 5078 False 650.166667 3339 94.632500 1 3627 6 chr7D.!!$F1 3626
4 TraesCS7B01G439700 chr7A 705677684 705680691 3007 False 1230.333333 3321 91.444667 646 3513 3 chr7A.!!$F3 2867
5 TraesCS7B01G439700 chr5B 586534218 586535967 1749 False 847.500000 1057 86.181500 972 2643 2 chr5B.!!$F2 1671
6 TraesCS7B01G439700 chr5D 478688449 478689772 1323 True 696.500000 837 85.872000 975 2545 2 chr5D.!!$R3 1570
7 TraesCS7B01G439700 chr5D 478598797 478599445 648 False 595.000000 595 83.460000 2007 2655 1 chr5D.!!$F1 648
8 TraesCS7B01G439700 chr1A 560880704 560881602 898 True 780.000000 780 82.656000 1010 1902 1 chr1A.!!$R1 892
9 TraesCS7B01G439700 chr1A 560841499 560842077 578 False 279.000000 279 75.822000 2010 2615 1 chr1A.!!$F1 605
10 TraesCS7B01G439700 chr1D 467862487 467863386 899 True 743.000000 743 81.888000 1009 1902 1 chr1D.!!$R1 893
11 TraesCS7B01G439700 chr3A 52963186 52963971 785 False 739.000000 739 83.767000 1109 1909 1 chr3A.!!$F1 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 862 0.037734 TTTTCGCCCTCTTCCCTTCC 59.962 55.0 0.00 0.00 0.00 3.46 F
425 911 0.101759 CATTGATGGGAAAGGCAGCG 59.898 55.0 0.00 0.00 0.00 5.18 F
527 1013 0.173935 CATCTACAACCGTACGCCCA 59.826 55.0 10.49 0.00 0.00 5.36 F
1983 2860 0.042731 TAGGCTTAGGTGCACCTCCT 59.957 55.0 41.00 37.26 44.77 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1961 2804 0.181350 AGGTGCACCTAAGCCTATGC 59.819 55.000 37.12 4.79 46.48 3.14 R
1976 2819 0.530650 ATGCGCGTGATAAGGAGGTG 60.531 55.000 8.43 0.00 0.00 4.00 R
2523 3474 1.301244 CCAGTCGAAGTGCAGCAGT 60.301 57.895 0.00 0.00 0.00 4.40 R
3552 5367 0.106318 TCTTCCTAGGGCCGTACTCC 60.106 60.000 9.46 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.929836 GCGCACATCTTAGGAACTCTG 59.070 52.381 0.30 0.00 41.75 3.35
77 78 4.690748 CGCACATCTTAGGAACTCTGAAAA 59.309 41.667 0.00 0.00 41.75 2.29
130 395 7.283322 GTTCAATAACTATCGCTAACGGGCG 62.283 48.000 12.17 12.17 43.06 6.13
138 403 2.507769 CTAACGGGCGGTCGGTTC 60.508 66.667 8.88 0.00 39.25 3.62
139 404 2.990967 TAACGGGCGGTCGGTTCT 60.991 61.111 8.88 0.00 39.25 3.01
140 405 3.285523 TAACGGGCGGTCGGTTCTG 62.286 63.158 8.88 0.00 39.25 3.02
150 417 0.320374 GTCGGTTCTGATGGTGGTGA 59.680 55.000 0.00 0.00 0.00 4.02
154 421 1.347707 GGTTCTGATGGTGGTGACTCA 59.652 52.381 0.00 0.00 0.00 3.41
165 432 3.303791 GGTGGTGACTCAAACGAACATTC 60.304 47.826 0.00 0.00 0.00 2.67
176 443 7.706179 ACTCAAACGAACATTCATTTTCAATGT 59.294 29.630 0.00 0.00 44.67 2.71
244 729 2.911819 ATCGTGCGGTGTTTAATTGG 57.088 45.000 0.00 0.00 0.00 3.16
260 746 4.858680 GGGCTTAGTGGAGGCGCC 62.859 72.222 21.89 21.89 42.68 6.53
276 762 2.677228 CCGAGCCCACCCTGAAAT 59.323 61.111 0.00 0.00 0.00 2.17
283 769 1.560505 CCCACCCTGAAATTCAAGGG 58.439 55.000 21.15 21.15 39.32 3.95
285 771 1.560505 CACCCTGAAATTCAAGGGGG 58.439 55.000 24.28 20.18 36.47 5.40
311 797 3.958147 GGATGGGTATTTGGTTAAGGTGG 59.042 47.826 0.00 0.00 0.00 4.61
325 811 1.666872 GGTGGAAGGGACGTTCGTG 60.667 63.158 1.74 0.00 0.00 4.35
332 818 2.652530 GGACGTTCGTGGGCTACA 59.347 61.111 1.74 0.00 0.00 2.74
340 826 2.596904 TCGTGGGCTACATAAGAAGC 57.403 50.000 0.88 0.00 38.03 3.86
348 834 5.127519 TGGGCTACATAAGAAGCTTACGTAA 59.872 40.000 7.94 7.94 38.80 3.18
371 857 1.943340 CTAGCATTTTCGCCCTCTTCC 59.057 52.381 0.00 0.00 0.00 3.46
376 862 0.037734 TTTTCGCCCTCTTCCCTTCC 59.962 55.000 0.00 0.00 0.00 3.46
388 874 1.082954 CCCTTCCCTCCCTCCTTCA 59.917 63.158 0.00 0.00 0.00 3.02
395 881 3.269034 TCCCTCCCTCCTTCAAGAAAAT 58.731 45.455 0.00 0.00 0.00 1.82
396 882 3.267031 TCCCTCCCTCCTTCAAGAAAATC 59.733 47.826 0.00 0.00 0.00 2.17
405 891 3.821033 CCTTCAAGAAAATCGACCACCTT 59.179 43.478 0.00 0.00 0.00 3.50
406 892 4.083271 CCTTCAAGAAAATCGACCACCTTC 60.083 45.833 0.00 0.00 0.00 3.46
407 893 4.079980 TCAAGAAAATCGACCACCTTCA 57.920 40.909 0.00 0.00 0.00 3.02
408 894 4.651778 TCAAGAAAATCGACCACCTTCAT 58.348 39.130 0.00 0.00 0.00 2.57
410 896 5.048782 TCAAGAAAATCGACCACCTTCATTG 60.049 40.000 0.00 0.00 0.00 2.82
411 897 4.651778 AGAAAATCGACCACCTTCATTGA 58.348 39.130 0.00 0.00 0.00 2.57
412 898 5.256474 AGAAAATCGACCACCTTCATTGAT 58.744 37.500 0.00 0.00 0.00 2.57
413 899 4.970662 AAATCGACCACCTTCATTGATG 57.029 40.909 0.00 0.00 0.00 3.07
414 900 2.401583 TCGACCACCTTCATTGATGG 57.598 50.000 15.20 15.20 38.26 3.51
415 901 1.065491 TCGACCACCTTCATTGATGGG 60.065 52.381 19.55 12.35 36.47 4.00
416 902 1.065491 CGACCACCTTCATTGATGGGA 60.065 52.381 19.55 0.00 36.47 4.37
425 911 0.101759 CATTGATGGGAAAGGCAGCG 59.898 55.000 0.00 0.00 0.00 5.18
432 918 2.334946 GGAAAGGCAGCGCATGACA 61.335 57.895 11.47 0.00 40.68 3.58
433 919 1.136147 GAAAGGCAGCGCATGACAG 59.864 57.895 11.47 0.00 40.68 3.51
441 927 0.538584 AGCGCATGACAGGAATCTCA 59.461 50.000 11.47 0.00 0.00 3.27
444 930 2.558378 CGCATGACAGGAATCTCACAT 58.442 47.619 0.00 0.00 0.00 3.21
459 945 0.822944 CACATGTGGTGGTGCAAGGA 60.823 55.000 18.51 0.00 44.04 3.36
481 967 1.072648 CTCCTACTCCTAGTCTCCGGG 59.927 61.905 0.00 0.00 0.00 5.73
497 983 0.320374 CGGGTGGTAGCACAAGAGAA 59.680 55.000 25.23 0.00 0.00 2.87
505 991 2.543777 AGCACAAGAGAACGGCTAAA 57.456 45.000 0.00 0.00 32.09 1.85
515 1001 4.081642 AGAGAACGGCTAAAAGCATCTACA 60.082 41.667 0.78 0.00 44.75 2.74
520 1006 3.007635 GGCTAAAAGCATCTACAACCGT 58.992 45.455 0.78 0.00 44.75 4.83
521 1007 4.186159 GGCTAAAAGCATCTACAACCGTA 58.814 43.478 0.78 0.00 44.75 4.02
526 1012 1.149964 GCATCTACAACCGTACGCCC 61.150 60.000 10.49 0.00 0.00 6.13
527 1013 0.173935 CATCTACAACCGTACGCCCA 59.826 55.000 10.49 0.00 0.00 5.36
528 1014 1.117150 ATCTACAACCGTACGCCCAT 58.883 50.000 10.49 0.00 0.00 4.00
533 1019 1.483415 ACAACCGTACGCCCATTATCT 59.517 47.619 10.49 0.00 0.00 1.98
535 1021 0.249741 ACCGTACGCCCATTATCTGC 60.250 55.000 10.49 0.00 0.00 4.26
541 1027 3.386543 GCCCATTATCTGCGACAGT 57.613 52.632 6.72 0.00 32.61 3.55
556 1042 2.615493 CGACAGTTGCCCTTTGGACTAT 60.615 50.000 0.00 0.00 0.00 2.12
558 1044 2.375174 ACAGTTGCCCTTTGGACTATCA 59.625 45.455 0.00 0.00 0.00 2.15
559 1045 3.010584 ACAGTTGCCCTTTGGACTATCAT 59.989 43.478 0.00 0.00 0.00 2.45
562 1048 4.016444 GTTGCCCTTTGGACTATCATTGA 58.984 43.478 0.00 0.00 0.00 2.57
563 1049 4.524802 TGCCCTTTGGACTATCATTGAT 57.475 40.909 4.28 4.28 0.00 2.57
566 1052 4.500375 GCCCTTTGGACTATCATTGATTGC 60.500 45.833 4.14 0.00 0.00 3.56
571 1057 7.767198 CCTTTGGACTATCATTGATTGCATTTT 59.233 33.333 4.14 0.00 0.00 1.82
572 1058 9.158233 CTTTGGACTATCATTGATTGCATTTTT 57.842 29.630 4.14 0.00 0.00 1.94
599 1085 3.460648 GCTTACCAAGCGGATCACT 57.539 52.632 0.00 0.00 45.74 3.41
600 1086 1.739067 GCTTACCAAGCGGATCACTT 58.261 50.000 0.00 0.00 45.74 3.16
601 1087 1.398390 GCTTACCAAGCGGATCACTTG 59.602 52.381 16.81 16.81 45.74 3.16
605 1091 1.503542 CAAGCGGATCACTTGGTGC 59.496 57.895 16.23 0.13 40.68 5.01
606 1092 1.675641 AAGCGGATCACTTGGTGCC 60.676 57.895 0.00 0.00 32.98 5.01
607 1093 3.134127 GCGGATCACTTGGTGCCC 61.134 66.667 0.00 0.00 32.98 5.36
608 1094 2.671070 CGGATCACTTGGTGCCCT 59.329 61.111 0.00 0.00 32.98 5.19
609 1095 1.002134 CGGATCACTTGGTGCCCTT 60.002 57.895 0.00 0.00 32.98 3.95
610 1096 0.609131 CGGATCACTTGGTGCCCTTT 60.609 55.000 0.00 0.00 32.98 3.11
611 1097 0.890683 GGATCACTTGGTGCCCTTTG 59.109 55.000 0.00 0.00 32.98 2.77
612 1098 0.890683 GATCACTTGGTGCCCTTTGG 59.109 55.000 0.00 0.00 32.98 3.28
613 1099 0.482446 ATCACTTGGTGCCCTTTGGA 59.518 50.000 0.00 0.00 32.98 3.53
614 1100 0.467290 TCACTTGGTGCCCTTTGGAC 60.467 55.000 0.00 0.00 32.98 4.02
615 1101 0.468029 CACTTGGTGCCCTTTGGACT 60.468 55.000 0.00 0.00 0.00 3.85
616 1102 1.145571 ACTTGGTGCCCTTTGGACTA 58.854 50.000 0.00 0.00 0.00 2.59
617 1103 1.710809 ACTTGGTGCCCTTTGGACTAT 59.289 47.619 0.00 0.00 0.00 2.12
618 1104 2.290960 ACTTGGTGCCCTTTGGACTATC 60.291 50.000 0.00 0.00 0.00 2.08
619 1105 0.251916 TGGTGCCCTTTGGACTATCG 59.748 55.000 0.00 0.00 0.00 2.92
620 1106 0.539986 GGTGCCCTTTGGACTATCGA 59.460 55.000 0.00 0.00 0.00 3.59
621 1107 1.653151 GTGCCCTTTGGACTATCGAC 58.347 55.000 0.00 0.00 0.00 4.20
622 1108 0.174845 TGCCCTTTGGACTATCGACG 59.825 55.000 0.00 0.00 0.00 5.12
623 1109 1.152383 GCCCTTTGGACTATCGACGC 61.152 60.000 0.00 0.00 0.00 5.19
624 1110 0.174845 CCCTTTGGACTATCGACGCA 59.825 55.000 0.00 0.00 0.00 5.24
625 1111 1.404986 CCCTTTGGACTATCGACGCAA 60.405 52.381 0.00 0.00 0.00 4.85
626 1112 2.550978 CCTTTGGACTATCGACGCAAT 58.449 47.619 0.00 0.00 0.00 3.56
627 1113 2.285220 CCTTTGGACTATCGACGCAATG 59.715 50.000 0.00 0.00 0.00 2.82
628 1114 1.934589 TTGGACTATCGACGCAATGG 58.065 50.000 0.00 0.00 0.00 3.16
629 1115 0.821517 TGGACTATCGACGCAATGGT 59.178 50.000 0.00 0.00 0.00 3.55
630 1116 2.025898 TGGACTATCGACGCAATGGTA 58.974 47.619 0.00 0.00 0.00 3.25
631 1117 2.626266 TGGACTATCGACGCAATGGTAT 59.374 45.455 0.00 0.00 0.00 2.73
632 1118 2.987149 GGACTATCGACGCAATGGTATG 59.013 50.000 0.00 0.00 0.00 2.39
633 1119 3.305131 GGACTATCGACGCAATGGTATGA 60.305 47.826 0.00 0.00 0.00 2.15
634 1120 4.486090 GACTATCGACGCAATGGTATGAT 58.514 43.478 0.00 0.00 0.00 2.45
635 1121 4.237724 ACTATCGACGCAATGGTATGATG 58.762 43.478 0.00 0.00 0.00 3.07
636 1122 2.880963 TCGACGCAATGGTATGATGA 57.119 45.000 0.00 0.00 0.00 2.92
637 1123 2.469826 TCGACGCAATGGTATGATGAC 58.530 47.619 0.00 0.00 0.00 3.06
641 1127 2.159099 ACGCAATGGTATGATGACGACT 60.159 45.455 0.00 0.00 0.00 4.18
678 1164 2.313342 ACAAACTATATGTTGGGGGCCA 59.687 45.455 4.39 0.00 39.13 5.36
730 1217 2.005451 GGCATCGACCATCATATCTGC 58.995 52.381 0.00 0.00 0.00 4.26
740 1227 3.307480 CCATCATATCTGCTGGAGATGCA 60.307 47.826 20.29 3.14 40.45 3.96
752 1239 3.603532 TGGAGATGCACTGAGATTTGAC 58.396 45.455 0.00 0.00 0.00 3.18
770 1257 9.878599 AGATTTGACTATACAACGTTCTTTTTG 57.121 29.630 0.00 0.00 0.00 2.44
837 1612 2.224495 AAACAAATGCATCGGCCGGG 62.224 55.000 27.83 19.27 40.13 5.73
838 1613 4.573950 CAAATGCATCGGCCGGGC 62.574 66.667 28.36 28.36 40.13 6.13
883 1658 4.453480 AGTCTTTTGTCCATTCCTCCAA 57.547 40.909 0.00 0.00 0.00 3.53
964 1764 3.944015 AGTGTACCGCCCGTCTATATATC 59.056 47.826 0.00 0.00 0.00 1.63
969 1769 2.427453 CCGCCCGTCTATATATCAAGCT 59.573 50.000 0.00 0.00 0.00 3.74
1915 2755 1.873863 GTAAGCAACCTCCAACGCC 59.126 57.895 0.00 0.00 0.00 5.68
1943 2786 2.831366 CGCTCTGCCATGCCATCAC 61.831 63.158 0.00 0.00 0.00 3.06
1944 2787 2.831366 GCTCTGCCATGCCATCACG 61.831 63.158 0.00 0.00 0.00 4.35
1946 2789 2.124612 CTGCCATGCCATCACGGA 60.125 61.111 0.00 0.00 36.56 4.69
1951 2794 1.680735 GCCATGCCATCACGGAAAATA 59.319 47.619 0.00 0.00 36.56 1.40
1952 2795 2.297033 GCCATGCCATCACGGAAAATAT 59.703 45.455 0.00 0.00 36.56 1.28
1954 2797 3.057315 CCATGCCATCACGGAAAATATCC 60.057 47.826 0.00 0.00 45.57 2.59
1956 2799 3.213506 TGCCATCACGGAAAATATCCTG 58.786 45.455 0.00 0.00 46.98 3.86
1957 2800 3.214328 GCCATCACGGAAAATATCCTGT 58.786 45.455 0.00 0.00 46.98 4.00
1958 2801 3.003689 GCCATCACGGAAAATATCCTGTG 59.996 47.826 10.92 10.92 46.98 3.66
1959 2802 3.565482 CCATCACGGAAAATATCCTGTGG 59.435 47.826 14.71 8.80 46.98 4.17
1961 2804 4.137116 TCACGGAAAATATCCTGTGGAG 57.863 45.455 14.71 0.00 46.98 3.86
1963 2806 2.238646 ACGGAAAATATCCTGTGGAGCA 59.761 45.455 0.00 0.00 46.98 4.26
1965 2808 4.102524 ACGGAAAATATCCTGTGGAGCATA 59.897 41.667 0.00 0.00 46.98 3.14
1966 2809 4.692625 CGGAAAATATCCTGTGGAGCATAG 59.307 45.833 0.00 0.00 46.98 2.23
1967 2810 5.006386 GGAAAATATCCTGTGGAGCATAGG 58.994 45.833 0.00 0.00 45.56 2.57
1968 2811 3.710209 AATATCCTGTGGAGCATAGGC 57.290 47.619 0.00 0.00 41.57 3.93
1979 2822 2.707902 GCATAGGCTTAGGTGCACC 58.292 57.895 29.22 29.22 37.52 5.01
1983 2860 0.042731 TAGGCTTAGGTGCACCTCCT 59.957 55.000 41.00 37.26 44.77 3.69
1985 2862 0.909623 GGCTTAGGTGCACCTCCTTA 59.090 55.000 41.00 22.04 44.77 2.69
1988 2871 2.170607 GCTTAGGTGCACCTCCTTATCA 59.829 50.000 41.00 20.02 44.77 2.15
2028 2967 4.814294 GACATCTTCGGCGCCGGT 62.814 66.667 44.95 34.44 40.25 5.28
2160 3099 3.618752 GCAAGGTGGTGGAACAAAAACTT 60.619 43.478 0.00 0.00 44.16 2.66
2163 3102 2.419436 GGTGGTGGAACAAAAACTTGGG 60.419 50.000 0.00 0.00 44.16 4.12
2387 3326 4.070552 GCCAGAGCGGTTCGAGGT 62.071 66.667 7.83 0.00 36.97 3.85
2388 3327 2.657237 CCAGAGCGGTTCGAGGTT 59.343 61.111 0.00 0.00 0.00 3.50
2436 3387 3.901797 CTTCAGGGGCGCGGACTTT 62.902 63.158 8.83 0.00 0.00 2.66
2692 3649 5.163683 GGTGTCTAGCTAGTTGATTCACGTA 60.164 44.000 20.10 0.00 0.00 3.57
2721 3689 8.042515 TGTGTGTACTCCTTTAAGTGTACTTTT 58.957 33.333 18.63 0.00 36.98 2.27
2854 3836 8.588290 AGTAATTTAGTGGCATAAATGTTGGA 57.412 30.769 12.49 0.39 35.91 3.53
2855 3837 8.466798 AGTAATTTAGTGGCATAAATGTTGGAC 58.533 33.333 12.49 8.27 35.91 4.02
2863 3845 9.860650 AGTGGCATAAATGTTGGACTATTATTA 57.139 29.630 0.00 0.00 0.00 0.98
2997 3979 5.814705 TGATTGGTTCAATTTGTGGTTGTTC 59.185 36.000 0.00 0.00 33.90 3.18
3011 3993 5.883115 TGTGGTTGTTCAATCTACTTGACAA 59.117 36.000 0.00 0.00 43.54 3.18
3015 3997 7.078228 GGTTGTTCAATCTACTTGACAATGTC 58.922 38.462 6.41 6.41 43.54 3.06
3028 4010 8.458573 ACTTGACAATGTCCTGTAAAATAACA 57.541 30.769 11.24 0.00 0.00 2.41
3029 4011 8.908903 ACTTGACAATGTCCTGTAAAATAACAA 58.091 29.630 11.24 0.00 0.00 2.83
3030 4012 9.912634 CTTGACAATGTCCTGTAAAATAACAAT 57.087 29.630 11.24 0.00 0.00 2.71
3031 4013 9.689976 TTGACAATGTCCTGTAAAATAACAATG 57.310 29.630 11.24 0.00 0.00 2.82
3032 4014 7.812191 TGACAATGTCCTGTAAAATAACAATGC 59.188 33.333 11.24 0.00 0.00 3.56
3091 4076 2.042162 TCTACAGACCCGGTTTCTACCT 59.958 50.000 0.00 0.00 42.66 3.08
3114 4099 2.115052 TGGGATGGCGCACAGTTT 59.885 55.556 10.83 0.00 31.33 2.66
3202 4187 5.598830 TGTCACACTACCTTCTCTCTTCTTT 59.401 40.000 0.00 0.00 0.00 2.52
3213 4198 8.767436 ACCTTCTCTCTTCTTTAATCAAGCTAT 58.233 33.333 0.00 0.00 31.70 2.97
3295 4282 4.752146 ACTAGCGGGTATGTTTGAAGTAC 58.248 43.478 0.00 0.00 0.00 2.73
3296 4283 3.975168 AGCGGGTATGTTTGAAGTACT 57.025 42.857 0.00 0.00 0.00 2.73
3297 4284 3.858247 AGCGGGTATGTTTGAAGTACTC 58.142 45.455 0.00 0.00 0.00 2.59
3298 4285 2.934553 GCGGGTATGTTTGAAGTACTCC 59.065 50.000 0.00 0.00 0.00 3.85
3299 4286 3.528532 CGGGTATGTTTGAAGTACTCCC 58.471 50.000 0.00 0.00 0.00 4.30
3300 4287 3.197116 CGGGTATGTTTGAAGTACTCCCT 59.803 47.826 0.00 0.00 0.00 4.20
3301 4288 4.679905 CGGGTATGTTTGAAGTACTCCCTC 60.680 50.000 0.00 0.00 0.00 4.30
3302 4289 4.383880 GGGTATGTTTGAAGTACTCCCTCC 60.384 50.000 0.00 0.00 0.00 4.30
3303 4290 4.224370 GGTATGTTTGAAGTACTCCCTCCA 59.776 45.833 0.00 0.00 0.00 3.86
3305 4292 4.993705 TGTTTGAAGTACTCCCTCCATT 57.006 40.909 0.00 0.00 0.00 3.16
3306 4293 5.319043 TGTTTGAAGTACTCCCTCCATTT 57.681 39.130 0.00 0.00 0.00 2.32
3307 4294 5.313712 TGTTTGAAGTACTCCCTCCATTTC 58.686 41.667 0.00 0.00 0.00 2.17
3308 4295 5.163141 TGTTTGAAGTACTCCCTCCATTTCA 60.163 40.000 0.00 0.00 0.00 2.69
3309 4296 5.779241 TTGAAGTACTCCCTCCATTTCAT 57.221 39.130 0.00 0.00 0.00 2.57
3310 4297 6.884472 TTGAAGTACTCCCTCCATTTCATA 57.116 37.500 0.00 0.00 0.00 2.15
3311 4298 6.884472 TGAAGTACTCCCTCCATTTCATAA 57.116 37.500 0.00 0.00 0.00 1.90
3312 4299 7.451731 TGAAGTACTCCCTCCATTTCATAAT 57.548 36.000 0.00 0.00 0.00 1.28
3313 4300 8.561536 TGAAGTACTCCCTCCATTTCATAATA 57.438 34.615 0.00 0.00 0.00 0.98
3314 4301 8.651389 TGAAGTACTCCCTCCATTTCATAATAG 58.349 37.037 0.00 0.00 0.00 1.73
3315 4302 8.798975 AAGTACTCCCTCCATTTCATAATAGA 57.201 34.615 0.00 0.00 0.00 1.98
3316 4303 8.980832 AGTACTCCCTCCATTTCATAATAGAT 57.019 34.615 0.00 0.00 0.00 1.98
3317 4304 8.820831 AGTACTCCCTCCATTTCATAATAGATG 58.179 37.037 0.00 0.00 0.00 2.90
3318 4305 7.878621 ACTCCCTCCATTTCATAATAGATGA 57.121 36.000 0.00 0.00 0.00 2.92
3319 4306 8.460317 ACTCCCTCCATTTCATAATAGATGAT 57.540 34.615 0.00 0.00 0.00 2.45
3320 4307 8.547173 ACTCCCTCCATTTCATAATAGATGATC 58.453 37.037 0.00 0.00 0.00 2.92
3321 4308 7.865820 TCCCTCCATTTCATAATAGATGATCC 58.134 38.462 0.00 0.00 0.00 3.36
3322 4309 7.462006 TCCCTCCATTTCATAATAGATGATCCA 59.538 37.037 0.00 0.00 0.00 3.41
3323 4310 8.111545 CCCTCCATTTCATAATAGATGATCCAA 58.888 37.037 0.00 0.00 0.00 3.53
3324 4311 8.954350 CCTCCATTTCATAATAGATGATCCAAC 58.046 37.037 0.00 0.00 0.00 3.77
3325 4312 9.736414 CTCCATTTCATAATAGATGATCCAACT 57.264 33.333 0.00 0.00 0.00 3.16
3339 4326 9.003658 AGATGATCCAACTTTGTACTAACTTTG 57.996 33.333 0.00 0.00 0.00 2.77
3340 4327 8.691661 ATGATCCAACTTTGTACTAACTTTGT 57.308 30.769 0.00 0.00 0.00 2.83
3341 4328 9.787435 ATGATCCAACTTTGTACTAACTTTGTA 57.213 29.630 0.00 0.00 0.00 2.41
3342 4329 9.787435 TGATCCAACTTTGTACTAACTTTGTAT 57.213 29.630 0.00 0.00 0.00 2.29
3346 4333 9.458374 CCAACTTTGTACTAACTTTGTATTTGG 57.542 33.333 0.00 0.00 0.00 3.28
3347 4334 9.458374 CAACTTTGTACTAACTTTGTATTTGGG 57.542 33.333 0.00 0.00 0.00 4.12
3348 4335 8.756486 ACTTTGTACTAACTTTGTATTTGGGT 57.244 30.769 0.00 0.00 0.00 4.51
3349 4336 8.843262 ACTTTGTACTAACTTTGTATTTGGGTC 58.157 33.333 0.00 0.00 0.00 4.46
3350 4337 7.424227 TTGTACTAACTTTGTATTTGGGTCG 57.576 36.000 0.00 0.00 0.00 4.79
3351 4338 6.757237 TGTACTAACTTTGTATTTGGGTCGA 58.243 36.000 0.00 0.00 0.00 4.20
3352 4339 7.215789 TGTACTAACTTTGTATTTGGGTCGAA 58.784 34.615 0.00 0.00 0.00 3.71
3353 4340 6.549912 ACTAACTTTGTATTTGGGTCGAAC 57.450 37.500 0.00 0.00 0.00 3.95
3354 4341 4.477302 AACTTTGTATTTGGGTCGAACG 57.523 40.909 0.00 0.00 0.00 3.95
3355 4342 2.809696 ACTTTGTATTTGGGTCGAACGG 59.190 45.455 0.00 0.00 0.00 4.44
3356 4343 2.835580 TTGTATTTGGGTCGAACGGA 57.164 45.000 0.00 0.00 0.00 4.69
3357 4344 2.373540 TGTATTTGGGTCGAACGGAG 57.626 50.000 0.00 0.00 0.00 4.63
3358 4345 1.066716 TGTATTTGGGTCGAACGGAGG 60.067 52.381 0.00 0.00 0.00 4.30
3359 4346 0.538118 TATTTGGGTCGAACGGAGGG 59.462 55.000 0.00 0.00 0.00 4.30
3360 4347 1.196104 ATTTGGGTCGAACGGAGGGA 61.196 55.000 0.00 0.00 0.00 4.20
3361 4348 1.823169 TTTGGGTCGAACGGAGGGAG 61.823 60.000 0.00 0.00 0.00 4.30
3362 4349 2.679287 GGGTCGAACGGAGGGAGT 60.679 66.667 0.00 0.00 0.00 3.85
3363 4350 1.379044 GGGTCGAACGGAGGGAGTA 60.379 63.158 0.00 0.00 0.00 2.59
3364 4351 0.967380 GGGTCGAACGGAGGGAGTAA 60.967 60.000 0.00 0.00 0.00 2.24
3365 4352 0.890683 GGTCGAACGGAGGGAGTAAA 59.109 55.000 0.00 0.00 0.00 2.01
3366 4353 1.273327 GGTCGAACGGAGGGAGTAAAA 59.727 52.381 0.00 0.00 0.00 1.52
3367 4354 2.289010 GGTCGAACGGAGGGAGTAAAAA 60.289 50.000 0.00 0.00 0.00 1.94
3391 4378 6.725101 AGATTACATCCCATCAACCCATAT 57.275 37.500 0.00 0.00 0.00 1.78
3553 5368 8.776376 AAAAACATTAGCATATTTGTTCCAGG 57.224 30.769 0.00 0.00 29.40 4.45
3554 5369 7.716799 AAACATTAGCATATTTGTTCCAGGA 57.283 32.000 0.00 0.00 29.40 3.86
3557 5372 7.573710 ACATTAGCATATTTGTTCCAGGAGTA 58.426 34.615 0.00 0.00 0.00 2.59
3559 5374 4.442706 AGCATATTTGTTCCAGGAGTACG 58.557 43.478 0.00 0.00 0.00 3.67
3560 5375 3.560068 GCATATTTGTTCCAGGAGTACGG 59.440 47.826 0.00 0.00 0.00 4.02
3561 5376 2.109425 ATTTGTTCCAGGAGTACGGC 57.891 50.000 0.00 0.00 0.00 5.68
3562 5377 0.035739 TTTGTTCCAGGAGTACGGCC 59.964 55.000 0.00 0.00 0.00 6.13
3563 5378 1.833787 TTGTTCCAGGAGTACGGCCC 61.834 60.000 0.00 0.00 0.00 5.80
3564 5379 1.988406 GTTCCAGGAGTACGGCCCT 60.988 63.158 0.00 2.01 0.00 5.19
3565 5380 0.685458 GTTCCAGGAGTACGGCCCTA 60.685 60.000 0.00 0.00 0.00 3.53
3566 5381 0.396695 TTCCAGGAGTACGGCCCTAG 60.397 60.000 0.00 0.00 0.00 3.02
3567 5382 1.833049 CCAGGAGTACGGCCCTAGG 60.833 68.421 0.06 0.06 0.00 3.02
3627 5558 5.824904 ATTGGCTAGCTTTTGTCATGTAG 57.175 39.130 15.72 0.00 0.00 2.74
3628 5559 3.009723 TGGCTAGCTTTTGTCATGTAGC 58.990 45.455 15.72 0.00 33.59 3.58
3629 5560 3.274288 GGCTAGCTTTTGTCATGTAGCT 58.726 45.455 15.72 0.00 45.32 3.32
3630 5561 4.081142 TGGCTAGCTTTTGTCATGTAGCTA 60.081 41.667 15.72 0.00 43.31 3.32
3631 5562 4.876107 GGCTAGCTTTTGTCATGTAGCTAA 59.124 41.667 15.72 0.00 43.42 3.09
3632 5563 5.007136 GGCTAGCTTTTGTCATGTAGCTAAG 59.993 44.000 15.72 0.00 43.42 2.18
3633 5564 5.582665 GCTAGCTTTTGTCATGTAGCTAAGT 59.417 40.000 7.70 0.00 43.42 2.24
3634 5565 6.757010 GCTAGCTTTTGTCATGTAGCTAAGTA 59.243 38.462 7.70 0.00 43.42 2.24
3635 5566 6.969828 AGCTTTTGTCATGTAGCTAAGTAC 57.030 37.500 0.00 0.00 41.87 2.73
3636 5567 6.702329 AGCTTTTGTCATGTAGCTAAGTACT 58.298 36.000 0.00 0.00 41.87 2.73
3637 5568 7.837863 AGCTTTTGTCATGTAGCTAAGTACTA 58.162 34.615 0.00 0.00 41.87 1.82
3638 5569 8.478877 AGCTTTTGTCATGTAGCTAAGTACTAT 58.521 33.333 0.00 0.00 41.87 2.12
3639 5570 8.756864 GCTTTTGTCATGTAGCTAAGTACTATC 58.243 37.037 0.00 0.00 0.00 2.08
3640 5571 9.803315 CTTTTGTCATGTAGCTAAGTACTATCA 57.197 33.333 0.00 0.00 0.00 2.15
3664 5595 9.890629 TCATTAGCATAGTAATGTCTTTGTCTT 57.109 29.630 4.03 0.00 40.12 3.01
3667 5598 9.944376 TTAGCATAGTAATGTCTTTGTCTTCTT 57.056 29.630 0.00 0.00 35.38 2.52
3668 5599 8.854614 AGCATAGTAATGTCTTTGTCTTCTTT 57.145 30.769 0.00 0.00 35.38 2.52
3669 5600 9.944376 AGCATAGTAATGTCTTTGTCTTCTTTA 57.056 29.630 0.00 0.00 35.38 1.85
3675 5606 9.166126 GTAATGTCTTTGTCTTCTTTAAAACCG 57.834 33.333 0.00 0.00 0.00 4.44
3676 5607 6.126568 TGTCTTTGTCTTCTTTAAAACCGG 57.873 37.500 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.226773 GCATTTGCCTAGCGCCTTG 60.227 57.895 2.29 0.00 36.24 3.61
11 12 2.045045 TGCATTTGCCTAGCGCCT 60.045 55.556 2.29 0.00 41.18 5.52
14 15 0.734309 TCATGTGCATTTGCCTAGCG 59.266 50.000 0.00 0.00 41.18 4.26
102 365 7.597743 CCCGTTAGCGATAGTTATTGAACTAAT 59.402 37.037 0.00 0.00 41.48 1.73
130 395 0.673644 CACCACCATCAGAACCGACC 60.674 60.000 0.00 0.00 0.00 4.79
132 397 0.320374 GTCACCACCATCAGAACCGA 59.680 55.000 0.00 0.00 0.00 4.69
135 400 2.839486 TGAGTCACCACCATCAGAAC 57.161 50.000 0.00 0.00 0.00 3.01
138 403 1.800586 CGTTTGAGTCACCACCATCAG 59.199 52.381 0.00 0.00 0.00 2.90
139 404 1.414550 TCGTTTGAGTCACCACCATCA 59.585 47.619 0.00 0.00 0.00 3.07
140 405 2.163818 TCGTTTGAGTCACCACCATC 57.836 50.000 0.00 0.00 0.00 3.51
141 406 2.218603 GTTCGTTTGAGTCACCACCAT 58.781 47.619 0.00 0.00 0.00 3.55
150 417 7.706179 ACATTGAAAATGAATGTTCGTTTGAGT 59.294 29.630 12.29 5.98 43.52 3.41
187 454 9.912634 ACAAGAATAAAAACAAGGACATATGTG 57.087 29.630 14.43 0.87 0.00 3.21
193 460 9.179909 TGACTAACAAGAATAAAAACAAGGACA 57.820 29.630 0.00 0.00 0.00 4.02
194 461 9.447040 GTGACTAACAAGAATAAAAACAAGGAC 57.553 33.333 0.00 0.00 0.00 3.85
195 462 9.403583 AGTGACTAACAAGAATAAAAACAAGGA 57.596 29.630 0.00 0.00 0.00 3.36
260 746 0.322456 TGAATTTCAGGGTGGGCTCG 60.322 55.000 0.00 0.00 0.00 5.03
261 747 1.821136 CTTGAATTTCAGGGTGGGCTC 59.179 52.381 0.73 0.00 0.00 4.70
283 769 0.469892 CCAAATACCCATCCTGCCCC 60.470 60.000 0.00 0.00 0.00 5.80
285 771 2.159179 AACCAAATACCCATCCTGCC 57.841 50.000 0.00 0.00 0.00 4.85
286 772 3.636764 CCTTAACCAAATACCCATCCTGC 59.363 47.826 0.00 0.00 0.00 4.85
287 773 4.644685 CACCTTAACCAAATACCCATCCTG 59.355 45.833 0.00 0.00 0.00 3.86
288 774 4.325816 CCACCTTAACCAAATACCCATCCT 60.326 45.833 0.00 0.00 0.00 3.24
289 775 3.958147 CCACCTTAACCAAATACCCATCC 59.042 47.826 0.00 0.00 0.00 3.51
290 776 4.862371 TCCACCTTAACCAAATACCCATC 58.138 43.478 0.00 0.00 0.00 3.51
291 777 4.957606 TCCACCTTAACCAAATACCCAT 57.042 40.909 0.00 0.00 0.00 4.00
292 778 4.509482 CCTTCCACCTTAACCAAATACCCA 60.509 45.833 0.00 0.00 0.00 4.51
293 779 4.021229 CCTTCCACCTTAACCAAATACCC 58.979 47.826 0.00 0.00 0.00 3.69
294 780 4.021229 CCCTTCCACCTTAACCAAATACC 58.979 47.826 0.00 0.00 0.00 2.73
295 781 4.703575 GTCCCTTCCACCTTAACCAAATAC 59.296 45.833 0.00 0.00 0.00 1.89
296 782 4.566070 CGTCCCTTCCACCTTAACCAAATA 60.566 45.833 0.00 0.00 0.00 1.40
297 783 3.774734 GTCCCTTCCACCTTAACCAAAT 58.225 45.455 0.00 0.00 0.00 2.32
311 797 1.880819 TAGCCCACGAACGTCCCTTC 61.881 60.000 0.00 0.00 0.00 3.46
325 811 4.056092 ACGTAAGCTTCTTATGTAGCCC 57.944 45.455 0.00 0.00 45.62 5.19
332 818 7.330900 TGCTAGACTTACGTAAGCTTCTTAT 57.669 36.000 30.47 12.84 45.62 1.73
340 826 5.276254 GGCGAAAATGCTAGACTTACGTAAG 60.276 44.000 29.27 29.27 38.16 2.34
348 834 1.834263 AGAGGGCGAAAATGCTAGACT 59.166 47.619 0.00 0.00 34.52 3.24
371 857 0.915364 CTTGAAGGAGGGAGGGAAGG 59.085 60.000 0.00 0.00 0.00 3.46
376 862 3.055094 TCGATTTTCTTGAAGGAGGGAGG 60.055 47.826 0.00 0.00 0.00 4.30
388 874 5.070001 TCAATGAAGGTGGTCGATTTTCTT 58.930 37.500 0.00 0.00 0.00 2.52
395 881 1.065491 CCCATCAATGAAGGTGGTCGA 60.065 52.381 3.70 0.00 0.00 4.20
396 882 1.065491 TCCCATCAATGAAGGTGGTCG 60.065 52.381 3.70 0.00 0.00 4.79
405 891 1.477553 GCTGCCTTTCCCATCAATGA 58.522 50.000 0.00 0.00 0.00 2.57
406 892 0.101759 CGCTGCCTTTCCCATCAATG 59.898 55.000 0.00 0.00 0.00 2.82
407 893 1.669999 GCGCTGCCTTTCCCATCAAT 61.670 55.000 0.00 0.00 0.00 2.57
408 894 2.342650 GCGCTGCCTTTCCCATCAA 61.343 57.895 0.00 0.00 0.00 2.57
410 896 2.123428 ATGCGCTGCCTTTCCCATC 61.123 57.895 9.73 0.00 0.00 3.51
411 897 2.043652 ATGCGCTGCCTTTCCCAT 60.044 55.556 9.73 0.00 0.00 4.00
412 898 3.063704 CATGCGCTGCCTTTCCCA 61.064 61.111 9.73 0.00 0.00 4.37
413 899 2.751436 TCATGCGCTGCCTTTCCC 60.751 61.111 9.73 0.00 0.00 3.97
414 900 2.262471 CTGTCATGCGCTGCCTTTCC 62.262 60.000 9.73 0.00 0.00 3.13
415 901 1.136147 CTGTCATGCGCTGCCTTTC 59.864 57.895 9.73 0.00 0.00 2.62
416 902 2.338015 CCTGTCATGCGCTGCCTTT 61.338 57.895 9.73 0.00 0.00 3.11
425 911 3.064958 CACATGTGAGATTCCTGTCATGC 59.935 47.826 21.64 0.00 35.45 4.06
441 927 0.823356 GTCCTTGCACCACCACATGT 60.823 55.000 0.00 0.00 0.00 3.21
444 930 2.194597 GGTCCTTGCACCACCACA 59.805 61.111 3.46 0.00 36.32 4.17
452 938 0.413832 AGGAGTAGGAGGTCCTTGCA 59.586 55.000 3.25 0.00 46.09 4.08
459 945 1.770061 CGGAGACTAGGAGTAGGAGGT 59.230 57.143 0.00 0.00 0.00 3.85
481 967 1.429463 CCGTTCTCTTGTGCTACCAC 58.571 55.000 0.00 0.00 42.40 4.16
497 983 3.007635 GGTTGTAGATGCTTTTAGCCGT 58.992 45.455 0.00 0.00 41.51 5.68
505 991 1.636988 GCGTACGGTTGTAGATGCTT 58.363 50.000 18.39 0.00 0.00 3.91
515 1001 1.808891 GCAGATAATGGGCGTACGGTT 60.809 52.381 18.39 0.00 0.00 4.44
526 1012 1.331756 GGGCAACTGTCGCAGATAATG 59.668 52.381 12.77 7.64 40.67 1.90
527 1013 1.210478 AGGGCAACTGTCGCAGATAAT 59.790 47.619 12.77 0.00 40.67 1.28
528 1014 0.613260 AGGGCAACTGTCGCAGATAA 59.387 50.000 12.77 0.00 40.67 1.75
533 1019 2.192861 CCAAAGGGCAACTGTCGCA 61.193 57.895 0.00 0.00 0.00 5.10
535 1021 0.535102 AGTCCAAAGGGCAACTGTCG 60.535 55.000 0.00 0.00 0.00 4.35
536 1022 2.561478 TAGTCCAAAGGGCAACTGTC 57.439 50.000 0.00 0.00 0.00 3.51
538 1024 3.071874 TGATAGTCCAAAGGGCAACTG 57.928 47.619 0.00 0.00 0.00 3.16
541 1027 4.314522 TCAATGATAGTCCAAAGGGCAA 57.685 40.909 0.00 0.00 0.00 4.52
588 1074 1.675641 GGCACCAAGTGATCCGCTT 60.676 57.895 0.00 0.00 35.23 4.68
589 1075 2.045926 GGCACCAAGTGATCCGCT 60.046 61.111 0.00 0.00 35.23 5.52
601 1087 0.539986 TCGATAGTCCAAAGGGCACC 59.460 55.000 0.00 0.00 45.24 5.01
602 1088 1.653151 GTCGATAGTCCAAAGGGCAC 58.347 55.000 0.00 0.00 37.40 5.01
603 1089 0.174845 CGTCGATAGTCCAAAGGGCA 59.825 55.000 0.00 0.00 37.40 5.36
604 1090 1.152383 GCGTCGATAGTCCAAAGGGC 61.152 60.000 0.00 0.00 37.40 5.19
605 1091 0.174845 TGCGTCGATAGTCCAAAGGG 59.825 55.000 0.00 0.00 37.40 3.95
606 1092 2.004583 TTGCGTCGATAGTCCAAAGG 57.995 50.000 0.00 0.00 37.40 3.11
607 1093 2.285220 CCATTGCGTCGATAGTCCAAAG 59.715 50.000 0.00 0.00 37.40 2.77
608 1094 2.276201 CCATTGCGTCGATAGTCCAAA 58.724 47.619 0.00 0.00 37.40 3.28
609 1095 1.206132 ACCATTGCGTCGATAGTCCAA 59.794 47.619 0.00 0.00 37.40 3.53
610 1096 0.821517 ACCATTGCGTCGATAGTCCA 59.178 50.000 0.00 0.00 37.40 4.02
611 1097 2.787601 TACCATTGCGTCGATAGTCC 57.212 50.000 0.00 0.00 37.40 3.85
612 1098 3.897325 TCATACCATTGCGTCGATAGTC 58.103 45.455 0.00 0.00 37.40 2.59
613 1099 4.022329 TCATCATACCATTGCGTCGATAGT 60.022 41.667 0.00 0.00 37.40 2.12
614 1100 4.324669 GTCATCATACCATTGCGTCGATAG 59.675 45.833 0.00 0.00 0.00 2.08
615 1101 4.234574 GTCATCATACCATTGCGTCGATA 58.765 43.478 0.00 0.00 0.00 2.92
616 1102 3.059884 GTCATCATACCATTGCGTCGAT 58.940 45.455 0.00 0.00 0.00 3.59
617 1103 2.469826 GTCATCATACCATTGCGTCGA 58.530 47.619 0.00 0.00 0.00 4.20
618 1104 1.190103 CGTCATCATACCATTGCGTCG 59.810 52.381 0.00 0.00 0.00 5.12
619 1105 2.218759 GTCGTCATCATACCATTGCGTC 59.781 50.000 0.00 0.00 0.00 5.19
620 1106 2.159099 AGTCGTCATCATACCATTGCGT 60.159 45.455 0.00 0.00 0.00 5.24
621 1107 2.473816 AGTCGTCATCATACCATTGCG 58.526 47.619 0.00 0.00 0.00 4.85
622 1108 5.164051 CGAATAGTCGTCATCATACCATTGC 60.164 44.000 4.05 0.00 42.53 3.56
623 1109 6.381465 CGAATAGTCGTCATCATACCATTG 57.619 41.667 4.05 0.00 42.53 2.82
641 1127 4.247258 AGTTTGTACCATTGCGTCGAATA 58.753 39.130 0.00 0.00 0.00 1.75
648 1134 6.198687 CCAACATATAGTTTGTACCATTGCG 58.801 40.000 0.00 0.00 38.74 4.85
718 1205 3.271729 GCATCTCCAGCAGATATGATGG 58.728 50.000 18.50 18.50 45.95 3.51
730 1217 3.622163 GTCAAATCTCAGTGCATCTCCAG 59.378 47.826 0.00 0.00 0.00 3.86
740 1227 7.603651 AGAACGTTGTATAGTCAAATCTCAGT 58.396 34.615 5.00 0.00 0.00 3.41
752 1239 8.347035 TCCTTTTCCAAAAAGAACGTTGTATAG 58.653 33.333 5.00 0.00 0.00 1.31
770 1257 2.094700 GGCCGTGAATTTCTCCTTTTCC 60.095 50.000 0.00 0.00 0.00 3.13
837 1612 3.950794 TTGTGAGATCACCGGCCGC 62.951 63.158 22.85 5.42 45.88 6.53
838 1613 0.744414 ATTTGTGAGATCACCGGCCG 60.744 55.000 21.04 21.04 45.88 6.13
839 1614 1.940613 GTATTTGTGAGATCACCGGCC 59.059 52.381 0.00 0.00 45.88 6.13
840 1615 2.906354 AGTATTTGTGAGATCACCGGC 58.094 47.619 0.00 0.00 45.88 6.13
841 1616 5.661458 ACTTAGTATTTGTGAGATCACCGG 58.339 41.667 10.34 0.00 45.88 5.28
842 1617 6.565234 AGACTTAGTATTTGTGAGATCACCG 58.435 40.000 10.34 0.00 45.88 4.94
843 1618 8.779354 AAAGACTTAGTATTTGTGAGATCACC 57.221 34.615 4.05 0.00 45.88 4.02
845 1620 9.778741 ACAAAAGACTTAGTATTTGTGAGATCA 57.221 29.630 20.54 0.00 42.57 2.92
847 1622 9.220767 GGACAAAAGACTTAGTATTTGTGAGAT 57.779 33.333 24.00 7.69 43.77 2.75
848 1623 8.208224 TGGACAAAAGACTTAGTATTTGTGAGA 58.792 33.333 24.00 11.15 43.77 3.27
849 1624 8.378172 TGGACAAAAGACTTAGTATTTGTGAG 57.622 34.615 24.00 11.09 43.77 3.51
850 1625 8.918202 ATGGACAAAAGACTTAGTATTTGTGA 57.082 30.769 24.00 14.98 43.77 3.58
851 1626 9.612620 GAATGGACAAAAGACTTAGTATTTGTG 57.387 33.333 24.00 17.14 43.77 3.33
852 1627 8.793592 GGAATGGACAAAAGACTTAGTATTTGT 58.206 33.333 21.03 21.03 45.70 2.83
853 1628 9.014297 AGGAATGGACAAAAGACTTAGTATTTG 57.986 33.333 16.52 16.52 38.42 2.32
854 1629 9.232473 GAGGAATGGACAAAAGACTTAGTATTT 57.768 33.333 0.00 0.00 0.00 1.40
855 1630 7.829706 GGAGGAATGGACAAAAGACTTAGTATT 59.170 37.037 0.00 0.00 0.00 1.89
856 1631 7.037586 TGGAGGAATGGACAAAAGACTTAGTAT 60.038 37.037 0.00 0.00 0.00 2.12
857 1632 6.271391 TGGAGGAATGGACAAAAGACTTAGTA 59.729 38.462 0.00 0.00 0.00 1.82
858 1633 5.073144 TGGAGGAATGGACAAAAGACTTAGT 59.927 40.000 0.00 0.00 0.00 2.24
859 1634 5.560724 TGGAGGAATGGACAAAAGACTTAG 58.439 41.667 0.00 0.00 0.00 2.18
860 1635 5.576563 TGGAGGAATGGACAAAAGACTTA 57.423 39.130 0.00 0.00 0.00 2.24
861 1636 4.453480 TGGAGGAATGGACAAAAGACTT 57.547 40.909 0.00 0.00 0.00 3.01
883 1658 5.760253 CCTAGGTATGAAATCAAAGATGCGT 59.240 40.000 0.00 0.00 0.00 5.24
964 1764 0.952497 ACCGATCAGTGTGCAGCTTG 60.952 55.000 0.00 0.00 0.00 4.01
969 1769 1.441738 CATTGACCGATCAGTGTGCA 58.558 50.000 0.00 0.00 37.69 4.57
1915 2755 3.509740 CATGGCAGAGCGAGATATGTAG 58.490 50.000 0.00 0.00 0.00 2.74
1944 2787 5.006386 CCTATGCTCCACAGGATATTTTCC 58.994 45.833 0.00 0.00 45.85 3.13
1946 2789 4.401925 GCCTATGCTCCACAGGATATTTT 58.598 43.478 0.00 0.00 32.85 1.82
1959 2802 4.131040 AGGTGCACCTAAGCCTATGCTC 62.131 54.545 37.12 4.08 45.15 4.26
1961 2804 0.181350 AGGTGCACCTAAGCCTATGC 59.819 55.000 37.12 4.79 46.48 3.14
1973 2816 1.421410 CGCGTGATAAGGAGGTGCAC 61.421 60.000 8.80 8.80 0.00 4.57
1974 2817 1.153647 CGCGTGATAAGGAGGTGCA 60.154 57.895 0.00 0.00 0.00 4.57
1975 2818 2.526120 GCGCGTGATAAGGAGGTGC 61.526 63.158 8.43 0.00 0.00 5.01
1976 2819 0.530650 ATGCGCGTGATAAGGAGGTG 60.531 55.000 8.43 0.00 0.00 4.00
1978 2821 2.370281 ATATGCGCGTGATAAGGAGG 57.630 50.000 13.61 0.00 0.00 4.30
1979 2822 8.972262 ATATTATATATGCGCGTGATAAGGAG 57.028 34.615 13.61 0.00 0.00 3.69
1983 2860 8.153724 GCGTATATTATATATGCGCGTGATAA 57.846 34.615 20.43 15.48 45.57 1.75
1985 2862 6.612855 GCGTATATTATATATGCGCGTGAT 57.387 37.500 20.43 8.21 45.57 3.06
2028 2967 2.713770 GTCGCCGATGTCTCGCTA 59.286 61.111 0.00 0.00 43.66 4.26
2349 3288 4.162690 AACTCCTCGGGCGCATCC 62.163 66.667 10.83 0.00 0.00 3.51
2373 3312 1.587054 CTCAACCTCGAACCGCTCT 59.413 57.895 0.00 0.00 0.00 4.09
2523 3474 1.301244 CCAGTCGAAGTGCAGCAGT 60.301 57.895 0.00 0.00 0.00 4.40
2560 3517 2.342648 GTCGAACTCGGCAGGGTT 59.657 61.111 0.21 0.21 45.26 4.11
2692 3649 5.925509 ACACTTAAAGGAGTACACACATGT 58.074 37.500 0.00 0.00 43.30 3.21
2830 3812 8.466798 AGTCCAACATTTATGCCACTAAATTAC 58.533 33.333 0.00 0.00 30.68 1.89
2923 3905 4.497300 CATACTCCGTCCGTCCTTTAAAA 58.503 43.478 0.00 0.00 0.00 1.52
2933 3915 0.458889 TTTTCCGCATACTCCGTCCG 60.459 55.000 0.00 0.00 0.00 4.79
2937 3919 2.413634 GGTTTGTTTTCCGCATACTCCG 60.414 50.000 0.00 0.00 0.00 4.63
2939 3921 2.846693 CGGTTTGTTTTCCGCATACTC 58.153 47.619 0.00 0.00 40.28 2.59
2984 3966 7.581213 TCAAGTAGATTGAACAACCACAAAT 57.419 32.000 0.00 0.00 45.00 2.32
2997 3979 7.905604 TTACAGGACATTGTCAAGTAGATTG 57.094 36.000 18.09 5.91 40.52 2.67
3011 3993 6.597672 TCTCGCATTGTTATTTTACAGGACAT 59.402 34.615 0.00 0.00 0.00 3.06
3015 3997 6.038161 TCCATCTCGCATTGTTATTTTACAGG 59.962 38.462 0.00 0.00 0.00 4.00
3028 4010 5.957842 TTTAAACAAGTCCATCTCGCATT 57.042 34.783 0.00 0.00 0.00 3.56
3029 4011 5.957842 TTTTAAACAAGTCCATCTCGCAT 57.042 34.783 0.00 0.00 0.00 4.73
3030 4012 5.759506 TTTTTAAACAAGTCCATCTCGCA 57.240 34.783 0.00 0.00 0.00 5.10
3071 4053 2.955477 GGTAGAAACCGGGTCTGTAG 57.045 55.000 17.70 0.00 35.62 2.74
3091 4076 3.006133 TGCGCCATCCCACTACCA 61.006 61.111 4.18 0.00 0.00 3.25
3109 4094 2.802774 GCACACATCCCCAAACAAACTG 60.803 50.000 0.00 0.00 0.00 3.16
3111 4096 1.137872 TGCACACATCCCCAAACAAAC 59.862 47.619 0.00 0.00 0.00 2.93
3114 4099 0.967662 CATGCACACATCCCCAAACA 59.032 50.000 0.00 0.00 32.87 2.83
3178 4163 4.730966 AGAAGAGAGAAGGTAGTGTGACA 58.269 43.478 0.00 0.00 0.00 3.58
3179 4164 5.715434 AAGAAGAGAGAAGGTAGTGTGAC 57.285 43.478 0.00 0.00 0.00 3.67
3213 4198 8.733458 CATGTCACAGAAGATGGATAAAAAGAA 58.267 33.333 0.00 0.00 0.00 2.52
3215 4200 7.966753 CACATGTCACAGAAGATGGATAAAAAG 59.033 37.037 0.00 0.00 0.00 2.27
3295 4282 7.992033 GGATCATCTATTATGAAATGGAGGGAG 59.008 40.741 0.00 0.00 36.21 4.30
3296 4283 7.462006 TGGATCATCTATTATGAAATGGAGGGA 59.538 37.037 0.00 0.00 36.21 4.20
3297 4284 7.636579 TGGATCATCTATTATGAAATGGAGGG 58.363 38.462 0.00 0.00 36.21 4.30
3298 4285 8.954350 GTTGGATCATCTATTATGAAATGGAGG 58.046 37.037 0.00 0.00 36.21 4.30
3299 4286 9.736414 AGTTGGATCATCTATTATGAAATGGAG 57.264 33.333 0.00 0.00 36.21 3.86
3313 4300 9.003658 CAAAGTTAGTACAAAGTTGGATCATCT 57.996 33.333 0.00 0.00 0.00 2.90
3314 4301 8.784043 ACAAAGTTAGTACAAAGTTGGATCATC 58.216 33.333 0.00 0.00 0.00 2.92
3315 4302 8.691661 ACAAAGTTAGTACAAAGTTGGATCAT 57.308 30.769 0.00 0.00 0.00 2.45
3316 4303 9.787435 ATACAAAGTTAGTACAAAGTTGGATCA 57.213 29.630 0.00 0.00 0.00 2.92
3320 4307 9.458374 CCAAATACAAAGTTAGTACAAAGTTGG 57.542 33.333 0.00 0.00 0.00 3.77
3321 4308 9.458374 CCCAAATACAAAGTTAGTACAAAGTTG 57.542 33.333 0.00 0.00 0.00 3.16
3322 4309 9.192642 ACCCAAATACAAAGTTAGTACAAAGTT 57.807 29.630 0.00 0.00 0.00 2.66
3323 4310 8.756486 ACCCAAATACAAAGTTAGTACAAAGT 57.244 30.769 0.00 0.00 0.00 2.66
3324 4311 8.013378 CGACCCAAATACAAAGTTAGTACAAAG 58.987 37.037 0.00 0.00 0.00 2.77
3325 4312 7.714377 TCGACCCAAATACAAAGTTAGTACAAA 59.286 33.333 0.00 0.00 0.00 2.83
3326 4313 7.215789 TCGACCCAAATACAAAGTTAGTACAA 58.784 34.615 0.00 0.00 0.00 2.41
3327 4314 6.757237 TCGACCCAAATACAAAGTTAGTACA 58.243 36.000 0.00 0.00 0.00 2.90
3328 4315 7.513132 GTTCGACCCAAATACAAAGTTAGTAC 58.487 38.462 0.00 0.00 0.00 2.73
3329 4316 6.365789 CGTTCGACCCAAATACAAAGTTAGTA 59.634 38.462 0.00 0.00 0.00 1.82
3330 4317 5.178067 CGTTCGACCCAAATACAAAGTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
3331 4318 5.390145 CCGTTCGACCCAAATACAAAGTTAG 60.390 44.000 0.00 0.00 0.00 2.34
3332 4319 4.451774 CCGTTCGACCCAAATACAAAGTTA 59.548 41.667 0.00 0.00 0.00 2.24
3333 4320 3.251487 CCGTTCGACCCAAATACAAAGTT 59.749 43.478 0.00 0.00 0.00 2.66
3334 4321 2.809696 CCGTTCGACCCAAATACAAAGT 59.190 45.455 0.00 0.00 0.00 2.66
3335 4322 3.068560 TCCGTTCGACCCAAATACAAAG 58.931 45.455 0.00 0.00 0.00 2.77
3336 4323 3.068560 CTCCGTTCGACCCAAATACAAA 58.931 45.455 0.00 0.00 0.00 2.83
3337 4324 2.613474 CCTCCGTTCGACCCAAATACAA 60.613 50.000 0.00 0.00 0.00 2.41
3338 4325 1.066716 CCTCCGTTCGACCCAAATACA 60.067 52.381 0.00 0.00 0.00 2.29
3339 4326 1.648504 CCTCCGTTCGACCCAAATAC 58.351 55.000 0.00 0.00 0.00 1.89
3340 4327 0.538118 CCCTCCGTTCGACCCAAATA 59.462 55.000 0.00 0.00 0.00 1.40
3341 4328 1.196104 TCCCTCCGTTCGACCCAAAT 61.196 55.000 0.00 0.00 0.00 2.32
3342 4329 1.823169 CTCCCTCCGTTCGACCCAAA 61.823 60.000 0.00 0.00 0.00 3.28
3343 4330 2.203669 TCCCTCCGTTCGACCCAA 60.204 61.111 0.00 0.00 0.00 4.12
3344 4331 2.141011 TACTCCCTCCGTTCGACCCA 62.141 60.000 0.00 0.00 0.00 4.51
3345 4332 0.967380 TTACTCCCTCCGTTCGACCC 60.967 60.000 0.00 0.00 0.00 4.46
3346 4333 0.890683 TTTACTCCCTCCGTTCGACC 59.109 55.000 0.00 0.00 0.00 4.79
3347 4334 2.730550 TTTTACTCCCTCCGTTCGAC 57.269 50.000 0.00 0.00 0.00 4.20
3364 4351 6.022315 TGGGTTGATGGGATGTAATCTTTTT 58.978 36.000 0.00 0.00 44.71 1.94
3365 4352 5.588845 TGGGTTGATGGGATGTAATCTTTT 58.411 37.500 0.00 0.00 44.71 2.27
3366 4353 5.205517 TGGGTTGATGGGATGTAATCTTT 57.794 39.130 0.00 0.00 44.71 2.52
3367 4354 4.879295 TGGGTTGATGGGATGTAATCTT 57.121 40.909 0.00 0.00 44.71 2.40
3368 4355 6.725101 ATATGGGTTGATGGGATGTAATCT 57.275 37.500 0.00 0.00 44.71 2.40
3369 4356 7.781324 AAATATGGGTTGATGGGATGTAATC 57.219 36.000 0.00 0.00 44.55 1.75
3436 4683 8.141268 ACGGTTTGTCAATCTGATATTTTGTTT 58.859 29.630 9.07 0.00 0.00 2.83
3546 5361 0.685458 TAGGGCCGTACTCCTGGAAC 60.685 60.000 0.00 0.00 34.75 3.62
3547 5362 0.396695 CTAGGGCCGTACTCCTGGAA 60.397 60.000 0.00 0.00 34.07 3.53
3548 5363 1.229359 CTAGGGCCGTACTCCTGGA 59.771 63.158 0.00 0.00 34.07 3.86
3550 5365 0.396695 TTCCTAGGGCCGTACTCCTG 60.397 60.000 9.46 0.00 34.75 3.86
3552 5367 0.106318 TCTTCCTAGGGCCGTACTCC 60.106 60.000 9.46 0.00 0.00 3.85
3553 5368 1.614413 CATCTTCCTAGGGCCGTACTC 59.386 57.143 9.46 0.00 0.00 2.59
3554 5369 1.705873 CATCTTCCTAGGGCCGTACT 58.294 55.000 9.46 0.00 0.00 2.73
3557 5372 1.383248 AGCATCTTCCTAGGGCCGT 60.383 57.895 9.46 2.24 0.00 5.68
3559 5374 1.228094 GCAGCATCTTCCTAGGGCC 60.228 63.158 9.46 0.00 0.00 5.80
3560 5375 1.228094 GGCAGCATCTTCCTAGGGC 60.228 63.158 9.46 3.65 0.00 5.19
3561 5376 0.108207 CTGGCAGCATCTTCCTAGGG 59.892 60.000 9.46 0.00 0.00 3.53
3562 5377 0.534652 GCTGGCAGCATCTTCCTAGG 60.535 60.000 33.33 0.82 41.89 3.02
3563 5378 0.469070 AGCTGGCAGCATCTTCCTAG 59.531 55.000 38.09 0.00 45.56 3.02
3564 5379 0.179702 CAGCTGGCAGCATCTTCCTA 59.820 55.000 38.09 0.00 45.56 2.94
3565 5380 1.077644 CAGCTGGCAGCATCTTCCT 60.078 57.895 38.09 15.66 45.56 3.36
3566 5381 2.772691 GCAGCTGGCAGCATCTTCC 61.773 63.158 38.09 16.79 45.56 3.46
3567 5382 2.799371 GCAGCTGGCAGCATCTTC 59.201 61.111 38.09 19.00 45.56 2.87
3638 5569 9.890629 AAGACAAAGACATTACTATGCTAATGA 57.109 29.630 9.66 0.00 37.49 2.57
3641 5572 9.944376 AAGAAGACAAAGACATTACTATGCTAA 57.056 29.630 0.00 0.00 35.03 3.09
3642 5573 9.944376 AAAGAAGACAAAGACATTACTATGCTA 57.056 29.630 0.00 0.00 35.03 3.49
3643 5574 8.854614 AAAGAAGACAAAGACATTACTATGCT 57.145 30.769 0.00 0.00 35.03 3.79
3649 5580 9.166126 CGGTTTTAAAGAAGACAAAGACATTAC 57.834 33.333 0.00 0.00 0.00 1.89
3650 5581 8.347035 CCGGTTTTAAAGAAGACAAAGACATTA 58.653 33.333 0.00 0.00 0.00 1.90
3651 5582 7.200455 CCGGTTTTAAAGAAGACAAAGACATT 58.800 34.615 0.00 0.00 0.00 2.71
3652 5583 6.735130 CCGGTTTTAAAGAAGACAAAGACAT 58.265 36.000 0.00 0.00 0.00 3.06
3653 5584 6.126568 CCGGTTTTAAAGAAGACAAAGACA 57.873 37.500 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.