Multiple sequence alignment - TraesCS7B01G439200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G439200 chr7B 100.000 2291 0 0 1 2291 704697063 704694773 0.000000e+00 4231.0
1 TraesCS7B01G439200 chr7B 94.521 584 32 0 736 1319 663194570 663193987 0.000000e+00 902.0
2 TraesCS7B01G439200 chr7B 94.359 585 32 1 736 1320 428933893 428934476 0.000000e+00 896.0
3 TraesCS7B01G439200 chr7B 94.198 586 34 0 736 1321 45326903 45327488 0.000000e+00 894.0
4 TraesCS7B01G439200 chr7B 94.340 583 33 0 736 1318 713392666 713393248 0.000000e+00 894.0
5 TraesCS7B01G439200 chr7B 81.105 344 38 13 1330 1649 704777554 704777214 1.360000e-62 250.0
6 TraesCS7B01G439200 chr2B 95.799 738 30 1 1 737 129816788 129817525 0.000000e+00 1190.0
7 TraesCS7B01G439200 chr2B 95.026 583 29 0 736 1318 768546441 768547023 0.000000e+00 917.0
8 TraesCS7B01G439200 chr2B 94.692 584 31 0 736 1319 387145448 387146031 0.000000e+00 907.0
9 TraesCS7B01G439200 chr7D 95.405 740 33 1 1 739 333570889 333571628 0.000000e+00 1177.0
10 TraesCS7B01G439200 chr7D 95.027 744 33 4 1 741 232173579 232172837 0.000000e+00 1166.0
11 TraesCS7B01G439200 chr7D 95.775 142 6 0 1476 1617 613708029 613707888 1.770000e-56 230.0
12 TraesCS7B01G439200 chr7D 93.284 134 6 3 1331 1461 613708331 613708198 6.460000e-46 195.0
13 TraesCS7B01G439200 chr6D 95.516 736 32 1 1 735 132578041 132577306 0.000000e+00 1175.0
14 TraesCS7B01G439200 chr6D 95.380 736 33 1 1 735 51889115 51889850 0.000000e+00 1170.0
15 TraesCS7B01G439200 chr4D 95.387 737 33 1 1 736 146344263 146344999 0.000000e+00 1171.0
16 TraesCS7B01G439200 chr5B 95.387 737 31 3 1 735 638883495 638882760 0.000000e+00 1170.0
17 TraesCS7B01G439200 chr5B 93.663 647 39 2 1646 2291 520880554 520881199 0.000000e+00 966.0
18 TraesCS7B01G439200 chr5B 94.521 584 32 0 736 1319 184287054 184287637 0.000000e+00 902.0
19 TraesCS7B01G439200 chr2D 95.257 738 33 2 1 736 156778258 156778995 0.000000e+00 1168.0
20 TraesCS7B01G439200 chr2D 93.808 646 39 1 1646 2291 136425715 136426359 0.000000e+00 970.0
21 TraesCS7B01G439200 chr6B 95.251 737 34 1 1 736 202079630 202078894 0.000000e+00 1166.0
22 TraesCS7B01G439200 chr6B 93.935 643 38 1 1649 2291 480907820 480907179 0.000000e+00 970.0
23 TraesCS7B01G439200 chr1D 93.963 646 38 1 1646 2291 223523481 223524125 0.000000e+00 976.0
24 TraesCS7B01G439200 chr5A 93.808 646 39 1 1646 2291 483275490 483276134 0.000000e+00 970.0
25 TraesCS7B01G439200 chr3B 93.808 646 39 1 1646 2291 275341007 275341651 0.000000e+00 970.0
26 TraesCS7B01G439200 chr3A 93.935 643 38 1 1649 2291 177919843 177919202 0.000000e+00 970.0
27 TraesCS7B01G439200 chr4B 93.779 643 39 1 1649 2291 5373958 5373317 0.000000e+00 965.0
28 TraesCS7B01G439200 chr4B 95.034 584 29 0 736 1319 647595500 647596083 0.000000e+00 918.0
29 TraesCS7B01G439200 chr4B 94.692 584 30 1 736 1319 814881 815463 0.000000e+00 905.0
30 TraesCS7B01G439200 chr1A 93.653 646 40 1 1646 2291 492997409 492998053 0.000000e+00 965.0
31 TraesCS7B01G439200 chr7A 86.831 243 11 7 1427 1649 705491834 705491593 3.780000e-63 252.0
32 TraesCS7B01G439200 chr7A 89.474 76 6 2 1328 1401 705492164 705492089 6.740000e-16 95.3
33 TraesCS7B01G439200 chr7A 88.000 75 7 2 1329 1401 705492253 705492179 1.130000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G439200 chr7B 704694773 704697063 2290 True 4231 4231 100.000 1 2291 1 chr7B.!!$R2 2290
1 TraesCS7B01G439200 chr7B 663193987 663194570 583 True 902 902 94.521 736 1319 1 chr7B.!!$R1 583
2 TraesCS7B01G439200 chr7B 428933893 428934476 583 False 896 896 94.359 736 1320 1 chr7B.!!$F2 584
3 TraesCS7B01G439200 chr7B 45326903 45327488 585 False 894 894 94.198 736 1321 1 chr7B.!!$F1 585
4 TraesCS7B01G439200 chr7B 713392666 713393248 582 False 894 894 94.340 736 1318 1 chr7B.!!$F3 582
5 TraesCS7B01G439200 chr2B 129816788 129817525 737 False 1190 1190 95.799 1 737 1 chr2B.!!$F1 736
6 TraesCS7B01G439200 chr2B 768546441 768547023 582 False 917 917 95.026 736 1318 1 chr2B.!!$F3 582
7 TraesCS7B01G439200 chr2B 387145448 387146031 583 False 907 907 94.692 736 1319 1 chr2B.!!$F2 583
8 TraesCS7B01G439200 chr7D 333570889 333571628 739 False 1177 1177 95.405 1 739 1 chr7D.!!$F1 738
9 TraesCS7B01G439200 chr7D 232172837 232173579 742 True 1166 1166 95.027 1 741 1 chr7D.!!$R1 740
10 TraesCS7B01G439200 chr6D 132577306 132578041 735 True 1175 1175 95.516 1 735 1 chr6D.!!$R1 734
11 TraesCS7B01G439200 chr6D 51889115 51889850 735 False 1170 1170 95.380 1 735 1 chr6D.!!$F1 734
12 TraesCS7B01G439200 chr4D 146344263 146344999 736 False 1171 1171 95.387 1 736 1 chr4D.!!$F1 735
13 TraesCS7B01G439200 chr5B 638882760 638883495 735 True 1170 1170 95.387 1 735 1 chr5B.!!$R1 734
14 TraesCS7B01G439200 chr5B 520880554 520881199 645 False 966 966 93.663 1646 2291 1 chr5B.!!$F2 645
15 TraesCS7B01G439200 chr5B 184287054 184287637 583 False 902 902 94.521 736 1319 1 chr5B.!!$F1 583
16 TraesCS7B01G439200 chr2D 156778258 156778995 737 False 1168 1168 95.257 1 736 1 chr2D.!!$F2 735
17 TraesCS7B01G439200 chr2D 136425715 136426359 644 False 970 970 93.808 1646 2291 1 chr2D.!!$F1 645
18 TraesCS7B01G439200 chr6B 202078894 202079630 736 True 1166 1166 95.251 1 736 1 chr6B.!!$R1 735
19 TraesCS7B01G439200 chr6B 480907179 480907820 641 True 970 970 93.935 1649 2291 1 chr6B.!!$R2 642
20 TraesCS7B01G439200 chr1D 223523481 223524125 644 False 976 976 93.963 1646 2291 1 chr1D.!!$F1 645
21 TraesCS7B01G439200 chr5A 483275490 483276134 644 False 970 970 93.808 1646 2291 1 chr5A.!!$F1 645
22 TraesCS7B01G439200 chr3B 275341007 275341651 644 False 970 970 93.808 1646 2291 1 chr3B.!!$F1 645
23 TraesCS7B01G439200 chr3A 177919202 177919843 641 True 970 970 93.935 1649 2291 1 chr3A.!!$R1 642
24 TraesCS7B01G439200 chr4B 5373317 5373958 641 True 965 965 93.779 1649 2291 1 chr4B.!!$R1 642
25 TraesCS7B01G439200 chr4B 647595500 647596083 583 False 918 918 95.034 736 1319 1 chr4B.!!$F2 583
26 TraesCS7B01G439200 chr4B 814881 815463 582 False 905 905 94.692 736 1319 1 chr4B.!!$F1 583
27 TraesCS7B01G439200 chr1A 492997409 492998053 644 False 965 965 93.653 1646 2291 1 chr1A.!!$F1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 513 0.326595 TACGGTGGATGCCATGTGTT 59.673 50.0 0.0 0.0 35.28 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1415 0.17668 AGGCGACTTCAATGCGAGAT 59.823 50.0 0.0 0.0 37.44 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 0.454196 GCGAACAATTAACGGGCCAT 59.546 50.000 4.39 0.00 0.00 4.40
251 253 5.543020 GGCCCACTAGTACCTGATTAAGTAT 59.457 44.000 0.00 0.00 0.00 2.12
285 287 1.909287 GGGCCGGCCTTTTTAACCA 60.909 57.895 42.70 0.00 36.10 3.67
511 513 0.326595 TACGGTGGATGCCATGTGTT 59.673 50.000 0.00 0.00 35.28 3.32
774 777 2.864885 ATGTAAATGCCCATTCCCCA 57.135 45.000 0.00 0.00 0.00 4.96
861 864 3.520569 TGCTTCGTTTGATCATGATCGA 58.479 40.909 26.52 23.38 40.63 3.59
919 922 7.284074 TGATAAAGGAAGATTTATTGCCGGTA 58.716 34.615 1.90 0.00 35.89 4.02
991 994 6.288096 TGGCCCTAAGGTTTGGATTATTAT 57.712 37.500 0.00 0.00 34.57 1.28
998 1001 7.647715 CCTAAGGTTTGGATTATTATTTGCACG 59.352 37.037 0.00 0.00 0.00 5.34
1001 1004 6.323739 AGGTTTGGATTATTATTTGCACGGAT 59.676 34.615 0.00 0.00 0.00 4.18
1024 1027 1.728490 GGGATGCAACCGCCTTGATC 61.728 60.000 6.95 0.00 37.32 2.92
1080 1083 3.726557 AAGAATGGAGGACAATCAGCA 57.273 42.857 0.00 0.00 31.16 4.41
1086 1089 0.251354 GAGGACAATCAGCAGGAGCA 59.749 55.000 0.00 0.00 45.49 4.26
1147 1150 9.720769 CTTGTGATTTTCCTCTTACTAGGTTTA 57.279 33.333 0.00 0.00 37.91 2.01
1339 1342 8.962884 AAAAAGATTGCAAATGTTAAGGTTCT 57.037 26.923 1.71 0.00 0.00 3.01
1341 1344 9.696917 AAAAGATTGCAAATGTTAAGGTTCTAG 57.303 29.630 1.71 0.00 0.00 2.43
1342 1345 6.856895 AGATTGCAAATGTTAAGGTTCTAGC 58.143 36.000 1.71 0.00 0.00 3.42
1343 1346 6.434028 AGATTGCAAATGTTAAGGTTCTAGCA 59.566 34.615 1.71 0.00 0.00 3.49
1344 1347 6.398234 TTGCAAATGTTAAGGTTCTAGCAA 57.602 33.333 0.00 0.00 36.10 3.91
1345 1348 5.768317 TGCAAATGTTAAGGTTCTAGCAAC 58.232 37.500 0.00 0.00 0.00 4.17
1346 1349 5.300539 TGCAAATGTTAAGGTTCTAGCAACA 59.699 36.000 0.00 0.00 33.96 3.33
1347 1350 6.183360 TGCAAATGTTAAGGTTCTAGCAACAA 60.183 34.615 0.00 0.00 33.24 2.83
1348 1351 6.143919 GCAAATGTTAAGGTTCTAGCAACAAC 59.856 38.462 7.18 0.00 33.24 3.32
1349 1352 6.952773 AATGTTAAGGTTCTAGCAACAACA 57.047 33.333 7.18 8.54 33.24 3.33
1350 1353 5.744666 TGTTAAGGTTCTAGCAACAACAC 57.255 39.130 7.18 1.11 0.00 3.32
1351 1354 4.577283 TGTTAAGGTTCTAGCAACAACACC 59.423 41.667 7.18 0.00 0.00 4.16
1352 1355 2.271944 AGGTTCTAGCAACAACACCC 57.728 50.000 7.18 0.00 0.00 4.61
1353 1356 0.872388 GGTTCTAGCAACAACACCCG 59.128 55.000 7.18 0.00 0.00 5.28
1354 1357 1.589803 GTTCTAGCAACAACACCCGT 58.410 50.000 0.00 0.00 0.00 5.28
1355 1358 2.548493 GGTTCTAGCAACAACACCCGTA 60.548 50.000 7.18 0.00 0.00 4.02
1356 1359 3.132925 GTTCTAGCAACAACACCCGTAA 58.867 45.455 0.00 0.00 0.00 3.18
1357 1360 3.688694 TCTAGCAACAACACCCGTAAT 57.311 42.857 0.00 0.00 0.00 1.89
1358 1361 4.804868 TCTAGCAACAACACCCGTAATA 57.195 40.909 0.00 0.00 0.00 0.98
1359 1362 4.751060 TCTAGCAACAACACCCGTAATAG 58.249 43.478 0.00 0.00 0.00 1.73
1360 1363 2.081462 AGCAACAACACCCGTAATAGC 58.919 47.619 0.00 0.00 0.00 2.97
1361 1364 1.807742 GCAACAACACCCGTAATAGCA 59.192 47.619 0.00 0.00 0.00 3.49
1362 1365 2.413634 GCAACAACACCCGTAATAGCAC 60.414 50.000 0.00 0.00 0.00 4.40
1363 1366 3.071479 CAACAACACCCGTAATAGCACT 58.929 45.455 0.00 0.00 0.00 4.40
1364 1367 2.968675 ACAACACCCGTAATAGCACTC 58.031 47.619 0.00 0.00 0.00 3.51
1365 1368 2.565834 ACAACACCCGTAATAGCACTCT 59.434 45.455 0.00 0.00 0.00 3.24
1366 1369 3.007614 ACAACACCCGTAATAGCACTCTT 59.992 43.478 0.00 0.00 0.00 2.85
1367 1370 4.221262 ACAACACCCGTAATAGCACTCTTA 59.779 41.667 0.00 0.00 0.00 2.10
1368 1371 4.650754 ACACCCGTAATAGCACTCTTAG 57.349 45.455 0.00 0.00 0.00 2.18
1369 1372 4.021916 ACACCCGTAATAGCACTCTTAGT 58.978 43.478 0.00 0.00 0.00 2.24
1370 1373 4.097589 ACACCCGTAATAGCACTCTTAGTC 59.902 45.833 0.00 0.00 0.00 2.59
1371 1374 4.097437 CACCCGTAATAGCACTCTTAGTCA 59.903 45.833 0.00 0.00 0.00 3.41
1372 1375 4.894114 ACCCGTAATAGCACTCTTAGTCAT 59.106 41.667 0.00 0.00 0.00 3.06
1373 1376 6.016527 CACCCGTAATAGCACTCTTAGTCATA 60.017 42.308 0.00 0.00 0.00 2.15
1374 1377 6.720288 ACCCGTAATAGCACTCTTAGTCATAT 59.280 38.462 0.00 0.00 0.00 1.78
1375 1378 7.232941 ACCCGTAATAGCACTCTTAGTCATATT 59.767 37.037 0.00 0.00 0.00 1.28
1376 1379 8.088981 CCCGTAATAGCACTCTTAGTCATATTT 58.911 37.037 0.00 0.00 0.00 1.40
1377 1380 9.477484 CCGTAATAGCACTCTTAGTCATATTTT 57.523 33.333 0.00 0.00 0.00 1.82
1384 1387 8.696374 AGCACTCTTAGTCATATTTTAGTAGCA 58.304 33.333 0.00 0.00 0.00 3.49
1385 1388 8.756864 GCACTCTTAGTCATATTTTAGTAGCAC 58.243 37.037 0.00 0.00 0.00 4.40
1386 1389 9.803315 CACTCTTAGTCATATTTTAGTAGCACA 57.197 33.333 0.00 0.00 0.00 4.57
1388 1391 8.873215 TCTTAGTCATATTTTAGTAGCACAGC 57.127 34.615 0.00 0.00 0.00 4.40
1389 1392 7.926555 TCTTAGTCATATTTTAGTAGCACAGCC 59.073 37.037 0.00 0.00 0.00 4.85
1390 1393 6.240549 AGTCATATTTTAGTAGCACAGCCT 57.759 37.500 0.00 0.00 0.00 4.58
1391 1394 7.361457 AGTCATATTTTAGTAGCACAGCCTA 57.639 36.000 0.00 0.00 0.00 3.93
1392 1395 7.967908 AGTCATATTTTAGTAGCACAGCCTAT 58.032 34.615 0.00 0.00 0.00 2.57
1393 1396 8.091449 AGTCATATTTTAGTAGCACAGCCTATC 58.909 37.037 0.00 0.00 0.00 2.08
1394 1397 7.872993 GTCATATTTTAGTAGCACAGCCTATCA 59.127 37.037 0.00 0.00 0.00 2.15
1395 1398 8.597167 TCATATTTTAGTAGCACAGCCTATCAT 58.403 33.333 0.00 0.00 0.00 2.45
1396 1399 9.224267 CATATTTTAGTAGCACAGCCTATCATT 57.776 33.333 0.00 0.00 0.00 2.57
1399 1402 9.799106 ATTTTAGTAGCACAGCCTATCATTATT 57.201 29.630 0.00 0.00 0.00 1.40
1401 1404 9.929180 TTTAGTAGCACAGCCTATCATTATTAG 57.071 33.333 0.00 0.00 0.00 1.73
1402 1405 6.402222 AGTAGCACAGCCTATCATTATTAGC 58.598 40.000 0.00 0.00 0.00 3.09
1403 1406 5.233083 AGCACAGCCTATCATTATTAGCA 57.767 39.130 0.00 0.00 0.00 3.49
1404 1407 4.999950 AGCACAGCCTATCATTATTAGCAC 59.000 41.667 0.00 0.00 0.00 4.40
1405 1408 4.999950 GCACAGCCTATCATTATTAGCACT 59.000 41.667 0.00 0.00 0.00 4.40
1406 1409 5.471456 GCACAGCCTATCATTATTAGCACTT 59.529 40.000 0.00 0.00 0.00 3.16
1407 1410 6.016777 GCACAGCCTATCATTATTAGCACTTT 60.017 38.462 0.00 0.00 0.00 2.66
1408 1411 7.173218 GCACAGCCTATCATTATTAGCACTTTA 59.827 37.037 0.00 0.00 0.00 1.85
1409 1412 9.056005 CACAGCCTATCATTATTAGCACTTTAA 57.944 33.333 0.00 0.00 0.00 1.52
1410 1413 9.277783 ACAGCCTATCATTATTAGCACTTTAAG 57.722 33.333 0.00 0.00 0.00 1.85
1411 1414 8.233190 CAGCCTATCATTATTAGCACTTTAAGC 58.767 37.037 0.00 0.00 0.00 3.09
1412 1415 7.939039 AGCCTATCATTATTAGCACTTTAAGCA 59.061 33.333 0.00 0.00 0.00 3.91
1413 1416 8.734386 GCCTATCATTATTAGCACTTTAAGCAT 58.266 33.333 0.00 0.00 0.00 3.79
1417 1420 8.076714 TCATTATTAGCACTTTAAGCATCTCG 57.923 34.615 0.00 0.00 0.00 4.04
1418 1421 4.802876 ATTAGCACTTTAAGCATCTCGC 57.197 40.909 0.00 0.00 42.91 5.03
1419 1422 2.099141 AGCACTTTAAGCATCTCGCA 57.901 45.000 0.00 0.00 46.13 5.10
1420 1423 2.636830 AGCACTTTAAGCATCTCGCAT 58.363 42.857 0.00 0.00 46.13 4.73
1421 1424 3.012518 AGCACTTTAAGCATCTCGCATT 58.987 40.909 0.00 0.00 46.13 3.56
1422 1425 3.103738 GCACTTTAAGCATCTCGCATTG 58.896 45.455 0.00 0.00 46.13 2.82
1423 1426 3.181507 GCACTTTAAGCATCTCGCATTGA 60.182 43.478 0.00 0.00 46.13 2.57
1424 1427 4.672542 GCACTTTAAGCATCTCGCATTGAA 60.673 41.667 0.00 0.00 46.13 2.69
1425 1428 5.026462 CACTTTAAGCATCTCGCATTGAAG 58.974 41.667 0.00 0.00 46.13 3.02
1426 1429 4.697352 ACTTTAAGCATCTCGCATTGAAGT 59.303 37.500 0.00 0.00 46.13 3.01
1427 1430 4.864916 TTAAGCATCTCGCATTGAAGTC 57.135 40.909 0.00 0.00 46.13 3.01
1428 1431 1.284657 AGCATCTCGCATTGAAGTCG 58.715 50.000 0.00 0.00 46.13 4.18
1429 1432 0.315706 GCATCTCGCATTGAAGTCGC 60.316 55.000 0.00 0.00 41.79 5.19
1430 1433 0.302890 CATCTCGCATTGAAGTCGCC 59.697 55.000 0.00 0.00 0.00 5.54
1431 1434 0.176680 ATCTCGCATTGAAGTCGCCT 59.823 50.000 0.00 0.00 0.00 5.52
1432 1435 0.037326 TCTCGCATTGAAGTCGCCTT 60.037 50.000 0.00 0.00 0.00 4.35
1433 1436 0.798776 CTCGCATTGAAGTCGCCTTT 59.201 50.000 0.00 0.00 0.00 3.11
1434 1437 0.796312 TCGCATTGAAGTCGCCTTTC 59.204 50.000 0.00 0.00 0.00 2.62
1435 1438 0.516877 CGCATTGAAGTCGCCTTTCA 59.483 50.000 0.00 0.00 33.00 2.69
1436 1439 1.069296 CGCATTGAAGTCGCCTTTCAA 60.069 47.619 9.96 9.96 45.49 2.69
1437 1440 2.604373 CGCATTGAAGTCGCCTTTCAAA 60.604 45.455 11.10 0.00 44.83 2.69
1438 1441 3.578688 GCATTGAAGTCGCCTTTCAAAT 58.421 40.909 11.10 0.00 44.83 2.32
1439 1442 3.365820 GCATTGAAGTCGCCTTTCAAATG 59.634 43.478 11.10 8.54 44.83 2.32
1440 1443 2.704725 TGAAGTCGCCTTTCAAATGC 57.295 45.000 0.00 0.00 31.98 3.56
1441 1444 2.229792 TGAAGTCGCCTTTCAAATGCT 58.770 42.857 0.00 0.00 31.98 3.79
1442 1445 2.226437 TGAAGTCGCCTTTCAAATGCTC 59.774 45.455 0.00 0.00 31.98 4.26
1443 1446 2.191128 AGTCGCCTTTCAAATGCTCT 57.809 45.000 0.00 0.00 0.00 4.09
1444 1447 2.508526 AGTCGCCTTTCAAATGCTCTT 58.491 42.857 0.00 0.00 0.00 2.85
1445 1448 3.674997 AGTCGCCTTTCAAATGCTCTTA 58.325 40.909 0.00 0.00 0.00 2.10
1446 1449 4.265073 AGTCGCCTTTCAAATGCTCTTAT 58.735 39.130 0.00 0.00 0.00 1.73
1447 1450 4.702131 AGTCGCCTTTCAAATGCTCTTATT 59.298 37.500 0.00 0.00 0.00 1.40
1448 1451 4.795278 GTCGCCTTTCAAATGCTCTTATTG 59.205 41.667 0.00 0.00 0.00 1.90
1449 1452 4.699735 TCGCCTTTCAAATGCTCTTATTGA 59.300 37.500 0.00 0.00 0.00 2.57
1450 1453 5.357878 TCGCCTTTCAAATGCTCTTATTGAT 59.642 36.000 0.00 0.00 33.45 2.57
1451 1454 6.038356 CGCCTTTCAAATGCTCTTATTGATT 58.962 36.000 0.00 0.00 33.45 2.57
1452 1455 7.066887 TCGCCTTTCAAATGCTCTTATTGATTA 59.933 33.333 0.00 0.00 33.45 1.75
1453 1456 7.701924 CGCCTTTCAAATGCTCTTATTGATTAA 59.298 33.333 0.00 0.00 33.45 1.40
1454 1457 9.028185 GCCTTTCAAATGCTCTTATTGATTAAG 57.972 33.333 0.00 0.00 38.98 1.85
1455 1458 9.028185 CCTTTCAAATGCTCTTATTGATTAAGC 57.972 33.333 0.00 0.00 37.75 3.09
1456 1459 9.577110 CTTTCAAATGCTCTTATTGATTAAGCA 57.423 29.630 0.00 0.00 46.04 3.91
1497 1500 2.847959 CACATAATGTGGATGCGCAA 57.152 45.000 17.11 0.00 44.27 4.85
1498 1501 2.723209 CACATAATGTGGATGCGCAAG 58.277 47.619 17.11 0.00 44.27 4.01
1499 1502 2.355444 CACATAATGTGGATGCGCAAGA 59.645 45.455 17.11 0.00 44.27 3.02
1500 1503 3.016031 ACATAATGTGGATGCGCAAGAA 58.984 40.909 17.11 0.00 43.02 2.52
1501 1504 3.065786 ACATAATGTGGATGCGCAAGAAG 59.934 43.478 17.11 0.00 43.02 2.85
1502 1505 1.825090 AATGTGGATGCGCAAGAAGA 58.175 45.000 17.11 0.73 43.02 2.87
1503 1506 2.048444 ATGTGGATGCGCAAGAAGAT 57.952 45.000 17.11 3.55 43.02 2.40
1504 1507 1.372582 TGTGGATGCGCAAGAAGATC 58.627 50.000 17.11 5.93 43.02 2.75
1505 1508 1.338960 TGTGGATGCGCAAGAAGATCA 60.339 47.619 17.11 5.00 43.02 2.92
1506 1509 1.739466 GTGGATGCGCAAGAAGATCAA 59.261 47.619 17.11 0.00 43.02 2.57
1507 1510 2.011947 TGGATGCGCAAGAAGATCAAG 58.988 47.619 17.11 0.00 43.02 3.02
1508 1511 2.283298 GGATGCGCAAGAAGATCAAGA 58.717 47.619 17.11 0.00 43.02 3.02
1509 1512 2.031437 GGATGCGCAAGAAGATCAAGAC 59.969 50.000 17.11 0.00 43.02 3.01
1510 1513 2.168326 TGCGCAAGAAGATCAAGACA 57.832 45.000 8.16 0.00 43.02 3.41
1511 1514 2.703416 TGCGCAAGAAGATCAAGACAT 58.297 42.857 8.16 0.00 43.02 3.06
1512 1515 2.674852 TGCGCAAGAAGATCAAGACATC 59.325 45.455 8.16 0.00 43.02 3.06
1513 1516 2.674852 GCGCAAGAAGATCAAGACATCA 59.325 45.455 0.30 0.00 43.02 3.07
1514 1517 3.311871 GCGCAAGAAGATCAAGACATCAT 59.688 43.478 0.30 0.00 43.02 2.45
1515 1518 4.785658 GCGCAAGAAGATCAAGACATCATG 60.786 45.833 0.30 0.00 43.02 3.07
1516 1519 4.331992 CGCAAGAAGATCAAGACATCATGT 59.668 41.667 0.00 0.00 43.02 3.21
1517 1520 5.521372 CGCAAGAAGATCAAGACATCATGTA 59.479 40.000 0.00 0.00 43.02 2.29
1518 1521 6.509199 CGCAAGAAGATCAAGACATCATGTAC 60.509 42.308 0.00 0.00 43.02 2.90
1519 1522 6.538021 GCAAGAAGATCAAGACATCATGTACT 59.462 38.462 0.00 0.00 0.00 2.73
1520 1523 7.465647 GCAAGAAGATCAAGACATCATGTACTG 60.466 40.741 0.00 0.00 0.00 2.74
1521 1524 6.047870 AGAAGATCAAGACATCATGTACTGC 58.952 40.000 0.00 0.00 0.00 4.40
1522 1525 5.611128 AGATCAAGACATCATGTACTGCT 57.389 39.130 0.00 0.00 0.00 4.24
1523 1526 6.721704 AGATCAAGACATCATGTACTGCTA 57.278 37.500 0.00 0.00 0.00 3.49
1524 1527 6.511416 AGATCAAGACATCATGTACTGCTAC 58.489 40.000 0.00 0.00 0.00 3.58
1525 1528 5.659440 TCAAGACATCATGTACTGCTACA 57.341 39.130 0.00 0.00 37.28 2.74
1526 1529 6.036577 TCAAGACATCATGTACTGCTACAA 57.963 37.500 0.00 0.00 36.43 2.41
1527 1530 6.643388 TCAAGACATCATGTACTGCTACAAT 58.357 36.000 0.00 0.00 36.43 2.71
1528 1531 7.105588 TCAAGACATCATGTACTGCTACAATT 58.894 34.615 0.00 0.00 36.43 2.32
1529 1532 8.257306 TCAAGACATCATGTACTGCTACAATTA 58.743 33.333 0.00 0.00 36.43 1.40
1530 1533 8.331022 CAAGACATCATGTACTGCTACAATTAC 58.669 37.037 0.00 0.00 36.43 1.89
1531 1534 6.986817 AGACATCATGTACTGCTACAATTACC 59.013 38.462 0.00 0.00 36.43 2.85
1532 1535 6.889198 ACATCATGTACTGCTACAATTACCT 58.111 36.000 0.00 0.00 36.43 3.08
1533 1536 6.986817 ACATCATGTACTGCTACAATTACCTC 59.013 38.462 0.00 0.00 36.43 3.85
1534 1537 6.791867 TCATGTACTGCTACAATTACCTCT 57.208 37.500 0.00 0.00 36.43 3.69
1535 1538 7.182817 TCATGTACTGCTACAATTACCTCTT 57.817 36.000 0.00 0.00 36.43 2.85
1536 1539 7.041721 TCATGTACTGCTACAATTACCTCTTG 58.958 38.462 0.00 0.00 36.43 3.02
1537 1540 6.354794 TGTACTGCTACAATTACCTCTTGT 57.645 37.500 0.00 0.00 39.93 3.16
1538 1541 7.470935 TGTACTGCTACAATTACCTCTTGTA 57.529 36.000 0.00 0.00 37.89 2.41
1539 1542 7.318141 TGTACTGCTACAATTACCTCTTGTAC 58.682 38.462 0.00 0.00 37.89 2.90
1540 1543 6.607004 ACTGCTACAATTACCTCTTGTACT 57.393 37.500 0.00 0.00 37.89 2.73
1541 1544 6.398918 ACTGCTACAATTACCTCTTGTACTG 58.601 40.000 0.00 0.00 37.89 2.74
1542 1545 6.014499 ACTGCTACAATTACCTCTTGTACTGT 60.014 38.462 0.00 0.00 37.89 3.55
1543 1546 6.765403 TGCTACAATTACCTCTTGTACTGTT 58.235 36.000 0.00 0.00 37.89 3.16
1544 1547 6.649141 TGCTACAATTACCTCTTGTACTGTTG 59.351 38.462 0.00 0.00 37.89 3.33
1545 1548 5.941948 ACAATTACCTCTTGTACTGTTGC 57.058 39.130 0.00 0.00 35.15 4.17
1546 1549 5.621193 ACAATTACCTCTTGTACTGTTGCT 58.379 37.500 0.00 0.00 35.15 3.91
1547 1550 6.765403 ACAATTACCTCTTGTACTGTTGCTA 58.235 36.000 0.00 0.00 35.15 3.49
1548 1551 6.649557 ACAATTACCTCTTGTACTGTTGCTAC 59.350 38.462 0.00 0.00 35.15 3.58
1549 1552 5.794726 TTACCTCTTGTACTGTTGCTACA 57.205 39.130 0.03 0.03 0.00 2.74
1550 1553 4.891992 ACCTCTTGTACTGTTGCTACAT 57.108 40.909 0.34 0.00 32.86 2.29
1551 1554 5.995565 ACCTCTTGTACTGTTGCTACATA 57.004 39.130 0.34 0.00 32.86 2.29
1552 1555 6.546428 ACCTCTTGTACTGTTGCTACATAT 57.454 37.500 0.34 0.00 32.86 1.78
1553 1556 6.947464 ACCTCTTGTACTGTTGCTACATATT 58.053 36.000 0.34 0.00 32.86 1.28
1554 1557 8.074613 ACCTCTTGTACTGTTGCTACATATTA 57.925 34.615 0.34 0.00 32.86 0.98
1555 1558 8.705594 ACCTCTTGTACTGTTGCTACATATTAT 58.294 33.333 0.34 0.00 32.86 1.28
1556 1559 8.982685 CCTCTTGTACTGTTGCTACATATTATG 58.017 37.037 0.34 2.03 32.86 1.90
1557 1560 8.887036 TCTTGTACTGTTGCTACATATTATGG 57.113 34.615 0.34 0.00 32.86 2.74
1558 1561 8.482943 TCTTGTACTGTTGCTACATATTATGGT 58.517 33.333 0.34 0.00 32.86 3.55
1559 1562 8.432110 TTGTACTGTTGCTACATATTATGGTG 57.568 34.615 0.34 2.06 32.86 4.17
1560 1563 7.787028 TGTACTGTTGCTACATATTATGGTGA 58.213 34.615 0.34 0.00 32.86 4.02
1561 1564 8.261522 TGTACTGTTGCTACATATTATGGTGAA 58.738 33.333 0.34 0.00 32.86 3.18
1562 1565 9.104965 GTACTGTTGCTACATATTATGGTGAAA 57.895 33.333 0.34 0.00 32.86 2.69
1563 1566 7.985476 ACTGTTGCTACATATTATGGTGAAAC 58.015 34.615 0.34 10.48 32.86 2.78
1564 1567 7.829211 ACTGTTGCTACATATTATGGTGAAACT 59.171 33.333 16.24 3.02 32.64 2.66
1565 1568 8.574251 TGTTGCTACATATTATGGTGAAACTT 57.426 30.769 16.24 0.00 36.74 2.66
1566 1569 9.019656 TGTTGCTACATATTATGGTGAAACTTT 57.980 29.630 16.24 0.00 36.74 2.66
1567 1570 9.289303 GTTGCTACATATTATGGTGAAACTTTG 57.711 33.333 8.48 0.00 36.74 2.77
1568 1571 8.800370 TGCTACATATTATGGTGAAACTTTGA 57.200 30.769 8.48 0.00 36.74 2.69
1569 1572 8.892723 TGCTACATATTATGGTGAAACTTTGAG 58.107 33.333 8.48 0.00 36.74 3.02
1570 1573 8.893727 GCTACATATTATGGTGAAACTTTGAGT 58.106 33.333 8.48 0.00 36.74 3.41
1572 1575 8.862325 ACATATTATGGTGAAACTTTGAGTGA 57.138 30.769 8.48 0.00 36.74 3.41
1573 1576 9.466497 ACATATTATGGTGAAACTTTGAGTGAT 57.534 29.630 8.48 0.00 36.74 3.06
1574 1577 9.941664 CATATTATGGTGAAACTTTGAGTGATC 57.058 33.333 0.00 0.00 36.74 2.92
1575 1578 9.685276 ATATTATGGTGAAACTTTGAGTGATCA 57.315 29.630 0.00 0.00 36.74 2.92
1576 1579 8.585471 ATTATGGTGAAACTTTGAGTGATCAT 57.415 30.769 0.00 0.00 36.74 2.45
1577 1580 9.685276 ATTATGGTGAAACTTTGAGTGATCATA 57.315 29.630 0.00 0.00 36.74 2.15
1578 1581 6.801539 TGGTGAAACTTTGAGTGATCATAC 57.198 37.500 0.00 0.00 36.74 2.39
1579 1582 5.408299 TGGTGAAACTTTGAGTGATCATACG 59.592 40.000 0.00 0.00 36.74 3.06
1580 1583 5.316770 GTGAAACTTTGAGTGATCATACGC 58.683 41.667 0.00 0.00 30.78 4.42
1581 1584 4.994217 TGAAACTTTGAGTGATCATACGCA 59.006 37.500 0.00 0.00 0.00 5.24
1582 1585 5.643348 TGAAACTTTGAGTGATCATACGCAT 59.357 36.000 0.00 0.00 30.57 4.73
1583 1586 5.475273 AACTTTGAGTGATCATACGCATG 57.525 39.130 0.00 0.00 30.57 4.06
1584 1587 3.310774 ACTTTGAGTGATCATACGCATGC 59.689 43.478 7.91 7.91 30.57 4.06
1585 1588 1.490621 TGAGTGATCATACGCATGCG 58.509 50.000 36.79 36.79 46.03 4.73
1586 1589 1.066908 TGAGTGATCATACGCATGCGA 59.933 47.619 43.72 27.61 42.83 5.10
1587 1590 1.718178 GAGTGATCATACGCATGCGAG 59.282 52.381 43.72 30.42 42.83 5.03
1588 1591 1.338020 AGTGATCATACGCATGCGAGA 59.662 47.619 43.72 33.85 42.83 4.04
1589 1592 2.029560 AGTGATCATACGCATGCGAGAT 60.030 45.455 43.72 36.26 42.83 2.75
1590 1593 3.191371 AGTGATCATACGCATGCGAGATA 59.809 43.478 43.72 26.91 42.83 1.98
1591 1594 4.108336 GTGATCATACGCATGCGAGATAT 58.892 43.478 43.72 27.85 42.83 1.63
1592 1595 5.066505 AGTGATCATACGCATGCGAGATATA 59.933 40.000 43.72 26.18 42.83 0.86
1593 1596 5.743872 GTGATCATACGCATGCGAGATATAA 59.256 40.000 43.72 25.13 42.83 0.98
1594 1597 6.253512 GTGATCATACGCATGCGAGATATAAA 59.746 38.462 43.72 21.81 42.83 1.40
1595 1598 6.980397 TGATCATACGCATGCGAGATATAAAT 59.020 34.615 43.72 24.77 42.83 1.40
1596 1599 7.492344 TGATCATACGCATGCGAGATATAAATT 59.508 33.333 43.72 21.12 42.83 1.82
1597 1600 6.992766 TCATACGCATGCGAGATATAAATTG 58.007 36.000 43.72 22.59 42.83 2.32
1598 1601 6.811170 TCATACGCATGCGAGATATAAATTGA 59.189 34.615 43.72 24.19 42.83 2.57
1599 1602 7.492344 TCATACGCATGCGAGATATAAATTGAT 59.508 33.333 43.72 19.95 42.83 2.57
1600 1603 6.099579 ACGCATGCGAGATATAAATTGATC 57.900 37.500 43.72 0.00 42.83 2.92
1601 1604 5.186053 CGCATGCGAGATATAAATTGATCG 58.814 41.667 35.82 0.00 42.83 3.69
1602 1605 5.004726 CGCATGCGAGATATAAATTGATCGA 59.995 40.000 35.82 0.00 42.83 3.59
1603 1606 6.292008 CGCATGCGAGATATAAATTGATCGAT 60.292 38.462 35.82 0.00 42.83 3.59
1604 1607 7.062240 GCATGCGAGATATAAATTGATCGATC 58.938 38.462 18.72 18.72 32.13 3.69
1605 1608 7.254218 GCATGCGAGATATAAATTGATCGATCA 60.254 37.037 23.99 23.99 34.44 2.92
1606 1609 8.762426 CATGCGAGATATAAATTGATCGATCAT 58.238 33.333 27.75 16.13 36.56 2.45
1607 1610 9.971922 ATGCGAGATATAAATTGATCGATCATA 57.028 29.630 27.75 17.74 36.56 2.15
1608 1611 9.801873 TGCGAGATATAAATTGATCGATCATAA 57.198 29.630 27.75 15.21 36.56 1.90
1621 1624 8.863872 TGATCGATCATAATCTAGGTACAAGA 57.136 34.615 23.99 0.00 0.00 3.02
1622 1625 9.467796 TGATCGATCATAATCTAGGTACAAGAT 57.532 33.333 23.99 4.55 35.17 2.40
1635 1638 9.621629 TCTAGGTACAAGATTTTCTTTTTGTGA 57.378 29.630 0.00 0.00 33.78 3.58
1638 1641 9.533253 AGGTACAAGATTTTCTTTTTGTGAATG 57.467 29.630 0.00 0.00 33.78 2.67
1639 1642 8.764287 GGTACAAGATTTTCTTTTTGTGAATGG 58.236 33.333 0.00 0.00 33.78 3.16
1640 1643 7.790823 ACAAGATTTTCTTTTTGTGAATGGG 57.209 32.000 0.00 0.00 33.78 4.00
1641 1644 7.337938 ACAAGATTTTCTTTTTGTGAATGGGT 58.662 30.769 0.00 0.00 33.78 4.51
1642 1645 7.828717 ACAAGATTTTCTTTTTGTGAATGGGTT 59.171 29.630 0.00 0.00 33.78 4.11
1643 1646 7.790823 AGATTTTCTTTTTGTGAATGGGTTG 57.209 32.000 0.00 0.00 0.00 3.77
1644 1647 7.337938 AGATTTTCTTTTTGTGAATGGGTTGT 58.662 30.769 0.00 0.00 0.00 3.32
1647 1650 9.625747 ATTTTCTTTTTGTGAATGGGTTGTTAT 57.374 25.926 0.00 0.00 0.00 1.89
1651 1654 2.784347 TGTGAATGGGTTGTTATCGCA 58.216 42.857 0.00 0.00 0.00 5.10
1682 1685 0.895559 GGTGGGCCTTGGAGAAACAG 60.896 60.000 4.53 0.00 0.00 3.16
1686 1689 2.158325 TGGGCCTTGGAGAAACAGAAAT 60.158 45.455 4.53 0.00 0.00 2.17
1689 1692 3.829026 GGCCTTGGAGAAACAGAAATTCT 59.171 43.478 0.00 0.00 39.76 2.40
1776 1779 3.507622 TGATGTCGACACTGATGACTTCT 59.492 43.478 22.71 0.00 37.56 2.85
1829 1832 4.498241 CTTTGAGCCCTTATCTTTTTGCC 58.502 43.478 0.00 0.00 0.00 4.52
1830 1833 3.168035 TGAGCCCTTATCTTTTTGCCA 57.832 42.857 0.00 0.00 0.00 4.92
1857 1860 0.183731 GGATGGGGTCACAAGGGATC 59.816 60.000 0.00 0.00 0.00 3.36
1902 1905 0.248377 GCTCTTTGCGGATGATGTGC 60.248 55.000 0.00 0.00 0.00 4.57
2042 2046 5.509832 TCAGTACTACTAGGTGTGAGGAA 57.490 43.478 0.00 0.00 0.00 3.36
2048 2052 3.544698 ACTAGGTGTGAGGAAGAGGAA 57.455 47.619 0.00 0.00 0.00 3.36
2055 2059 3.006967 GTGTGAGGAAGAGGAAGTTAGCA 59.993 47.826 0.00 0.00 0.00 3.49
2066 2070 2.760092 GGAAGTTAGCATTGATGGCCAA 59.240 45.455 10.96 0.00 39.41 4.52
2087 2091 1.968493 GTGGTACCTCAGAAGGACACA 59.032 52.381 14.36 0.00 46.67 3.72
2093 2097 2.632996 ACCTCAGAAGGACACATTTCGA 59.367 45.455 0.00 0.00 46.67 3.71
2102 2106 5.110814 AGGACACATTTCGATATTTGGGA 57.889 39.130 6.89 0.00 0.00 4.37
2113 2117 4.024133 TCGATATTTGGGATCAATGTTGCG 60.024 41.667 0.00 0.00 32.28 4.85
2116 2120 0.251564 TTGGGATCAATGTTGCGGGT 60.252 50.000 0.00 0.00 0.00 5.28
2144 2148 6.903516 TGGGAGTATTGATGAAGATGTGAAT 58.096 36.000 0.00 0.00 0.00 2.57
2145 2149 7.348815 TGGGAGTATTGATGAAGATGTGAATT 58.651 34.615 0.00 0.00 0.00 2.17
2181 2185 0.611618 ATGGATGAAGTGGCGCCAAA 60.612 50.000 34.66 17.93 31.53 3.28
2246 2250 1.065126 GGCAAGTTCTACAGGATGGCT 60.065 52.381 0.00 0.00 43.62 4.75
2256 2260 1.918293 AGGATGGCTGTTCGACCCA 60.918 57.895 0.00 0.00 0.00 4.51
2257 2261 1.224592 GGATGGCTGTTCGACCCAT 59.775 57.895 5.95 5.95 41.83 4.00
2262 2266 1.280710 TGGCTGTTCGACCCATAATGT 59.719 47.619 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 253 0.324275 GCCCAGTCAAAGGCCCATAA 60.324 55.000 0.00 0.00 43.76 1.90
285 287 0.106015 GCCCAACAGAGGCCCATATT 60.106 55.000 0.00 0.00 45.16 1.28
313 315 3.255888 ACATGCCTATGATACGTCGACAT 59.744 43.478 17.16 1.85 37.73 3.06
616 618 4.672587 TCAAGATAGTCATACCTGTGCC 57.327 45.455 0.00 0.00 0.00 5.01
861 864 1.276622 CCCCAGCTGTACCACTAAGT 58.723 55.000 13.81 0.00 0.00 2.24
919 922 4.956075 ACACCAGTCAAACTTCCAATTTCT 59.044 37.500 0.00 0.00 0.00 2.52
991 994 3.636929 ATCCCGCCATCCGTGCAAA 62.637 57.895 0.00 0.00 34.38 3.68
998 1001 3.219198 GGTTGCATCCCGCCATCC 61.219 66.667 2.02 0.00 41.33 3.51
1014 1017 1.205655 TCTGAGTTGAGATCAAGGCGG 59.794 52.381 0.00 0.00 36.39 6.13
1024 1027 7.895975 TGACTTCAATATTGTCTGAGTTGAG 57.104 36.000 14.97 4.05 31.28 3.02
1059 1062 4.384537 CCTGCTGATTGTCCTCCATTCTTA 60.385 45.833 0.00 0.00 0.00 2.10
1147 1150 8.602472 TTATTTGCCTCCCTATTACAATGTTT 57.398 30.769 0.00 0.00 0.00 2.83
1321 1324 6.183360 TGTTGCTAGAACCTTAACATTTGCAA 60.183 34.615 0.00 0.00 34.90 4.08
1322 1325 5.300539 TGTTGCTAGAACCTTAACATTTGCA 59.699 36.000 0.00 0.00 0.00 4.08
1323 1326 5.768317 TGTTGCTAGAACCTTAACATTTGC 58.232 37.500 0.00 0.00 0.00 3.68
1324 1327 7.167468 GTGTTGTTGCTAGAACCTTAACATTTG 59.833 37.037 5.77 0.00 32.07 2.32
1325 1328 7.200455 GTGTTGTTGCTAGAACCTTAACATTT 58.800 34.615 5.77 0.00 32.07 2.32
1326 1329 6.238925 GGTGTTGTTGCTAGAACCTTAACATT 60.239 38.462 5.77 0.00 32.07 2.71
1327 1330 5.240844 GGTGTTGTTGCTAGAACCTTAACAT 59.759 40.000 5.77 0.00 32.07 2.71
1328 1331 4.577283 GGTGTTGTTGCTAGAACCTTAACA 59.423 41.667 5.77 0.58 0.00 2.41
1329 1332 4.023450 GGGTGTTGTTGCTAGAACCTTAAC 60.023 45.833 5.77 0.00 0.00 2.01
1330 1333 4.139038 GGGTGTTGTTGCTAGAACCTTAA 58.861 43.478 5.77 0.00 0.00 1.85
1331 1334 3.746940 GGGTGTTGTTGCTAGAACCTTA 58.253 45.455 5.77 0.00 0.00 2.69
1332 1335 2.583143 GGGTGTTGTTGCTAGAACCTT 58.417 47.619 5.77 0.00 0.00 3.50
1333 1336 1.542547 CGGGTGTTGTTGCTAGAACCT 60.543 52.381 5.77 0.00 0.00 3.50
1334 1337 0.872388 CGGGTGTTGTTGCTAGAACC 59.128 55.000 5.77 0.00 0.00 3.62
1335 1338 1.589803 ACGGGTGTTGTTGCTAGAAC 58.410 50.000 1.21 1.21 0.00 3.01
1336 1339 3.472283 TTACGGGTGTTGTTGCTAGAA 57.528 42.857 0.00 0.00 0.00 2.10
1337 1340 3.688694 ATTACGGGTGTTGTTGCTAGA 57.311 42.857 0.00 0.00 0.00 2.43
1338 1341 3.308866 GCTATTACGGGTGTTGTTGCTAG 59.691 47.826 0.00 0.00 0.00 3.42
1339 1342 3.264104 GCTATTACGGGTGTTGTTGCTA 58.736 45.455 0.00 0.00 0.00 3.49
1340 1343 2.081462 GCTATTACGGGTGTTGTTGCT 58.919 47.619 0.00 0.00 0.00 3.91
1341 1344 1.807742 TGCTATTACGGGTGTTGTTGC 59.192 47.619 0.00 0.00 0.00 4.17
1342 1345 3.071479 AGTGCTATTACGGGTGTTGTTG 58.929 45.455 0.00 0.00 0.00 3.33
1343 1346 3.007614 AGAGTGCTATTACGGGTGTTGTT 59.992 43.478 0.00 0.00 0.00 2.83
1344 1347 2.565834 AGAGTGCTATTACGGGTGTTGT 59.434 45.455 0.00 0.00 0.00 3.32
1345 1348 3.247006 AGAGTGCTATTACGGGTGTTG 57.753 47.619 0.00 0.00 0.00 3.33
1346 1349 3.975168 AAGAGTGCTATTACGGGTGTT 57.025 42.857 0.00 0.00 0.00 3.32
1347 1350 4.021916 ACTAAGAGTGCTATTACGGGTGT 58.978 43.478 0.00 0.00 0.00 4.16
1348 1351 4.097437 TGACTAAGAGTGCTATTACGGGTG 59.903 45.833 0.00 0.00 0.00 4.61
1349 1352 4.275810 TGACTAAGAGTGCTATTACGGGT 58.724 43.478 0.00 0.00 0.00 5.28
1350 1353 4.913335 TGACTAAGAGTGCTATTACGGG 57.087 45.455 0.00 0.00 0.00 5.28
1351 1354 9.477484 AAAATATGACTAAGAGTGCTATTACGG 57.523 33.333 0.00 0.00 0.00 4.02
1358 1361 8.696374 TGCTACTAAAATATGACTAAGAGTGCT 58.304 33.333 0.00 0.00 0.00 4.40
1359 1362 8.756864 GTGCTACTAAAATATGACTAAGAGTGC 58.243 37.037 0.00 0.00 0.00 4.40
1360 1363 9.803315 TGTGCTACTAAAATATGACTAAGAGTG 57.197 33.333 0.00 0.00 0.00 3.51
1362 1365 8.973378 GCTGTGCTACTAAAATATGACTAAGAG 58.027 37.037 0.00 0.00 0.00 2.85
1363 1366 7.926555 GGCTGTGCTACTAAAATATGACTAAGA 59.073 37.037 0.00 0.00 0.00 2.10
1364 1367 7.928706 AGGCTGTGCTACTAAAATATGACTAAG 59.071 37.037 0.00 0.00 0.00 2.18
1365 1368 7.792032 AGGCTGTGCTACTAAAATATGACTAA 58.208 34.615 0.00 0.00 0.00 2.24
1366 1369 7.361457 AGGCTGTGCTACTAAAATATGACTA 57.639 36.000 0.00 0.00 0.00 2.59
1367 1370 6.240549 AGGCTGTGCTACTAAAATATGACT 57.759 37.500 0.00 0.00 0.00 3.41
1368 1371 7.872993 TGATAGGCTGTGCTACTAAAATATGAC 59.127 37.037 0.00 0.00 0.00 3.06
1369 1372 7.962441 TGATAGGCTGTGCTACTAAAATATGA 58.038 34.615 0.00 0.00 0.00 2.15
1370 1373 8.783833 ATGATAGGCTGTGCTACTAAAATATG 57.216 34.615 0.00 0.00 0.00 1.78
1373 1376 9.799106 AATAATGATAGGCTGTGCTACTAAAAT 57.201 29.630 0.00 0.00 0.00 1.82
1375 1378 9.929180 CTAATAATGATAGGCTGTGCTACTAAA 57.071 33.333 0.00 0.00 0.00 1.85
1376 1379 8.035394 GCTAATAATGATAGGCTGTGCTACTAA 58.965 37.037 0.00 0.00 0.00 2.24
1377 1380 7.178451 TGCTAATAATGATAGGCTGTGCTACTA 59.822 37.037 0.00 0.00 0.00 1.82
1378 1381 6.014242 TGCTAATAATGATAGGCTGTGCTACT 60.014 38.462 0.00 0.00 0.00 2.57
1379 1382 6.091441 GTGCTAATAATGATAGGCTGTGCTAC 59.909 42.308 0.00 0.00 0.00 3.58
1380 1383 6.014242 AGTGCTAATAATGATAGGCTGTGCTA 60.014 38.462 0.00 0.00 0.00 3.49
1381 1384 4.999950 GTGCTAATAATGATAGGCTGTGCT 59.000 41.667 0.00 0.00 0.00 4.40
1382 1385 4.999950 AGTGCTAATAATGATAGGCTGTGC 59.000 41.667 0.00 0.00 0.00 4.57
1383 1386 7.502120 AAAGTGCTAATAATGATAGGCTGTG 57.498 36.000 0.00 0.00 0.00 3.66
1384 1387 9.277783 CTTAAAGTGCTAATAATGATAGGCTGT 57.722 33.333 0.00 0.00 0.00 4.40
1385 1388 8.233190 GCTTAAAGTGCTAATAATGATAGGCTG 58.767 37.037 0.00 0.00 0.00 4.85
1386 1389 7.939039 TGCTTAAAGTGCTAATAATGATAGGCT 59.061 33.333 0.00 0.00 0.00 4.58
1387 1390 8.099364 TGCTTAAAGTGCTAATAATGATAGGC 57.901 34.615 0.00 0.00 0.00 3.93
1391 1394 8.715998 CGAGATGCTTAAAGTGCTAATAATGAT 58.284 33.333 0.00 0.00 0.00 2.45
1392 1395 7.307396 GCGAGATGCTTAAAGTGCTAATAATGA 60.307 37.037 0.00 0.00 41.73 2.57
1393 1396 6.794158 GCGAGATGCTTAAAGTGCTAATAATG 59.206 38.462 0.00 0.00 41.73 1.90
1394 1397 6.483307 TGCGAGATGCTTAAAGTGCTAATAAT 59.517 34.615 0.00 0.00 46.63 1.28
1395 1398 5.815222 TGCGAGATGCTTAAAGTGCTAATAA 59.185 36.000 0.00 0.00 46.63 1.40
1396 1399 5.356426 TGCGAGATGCTTAAAGTGCTAATA 58.644 37.500 0.00 0.00 46.63 0.98
1397 1400 4.191544 TGCGAGATGCTTAAAGTGCTAAT 58.808 39.130 0.00 0.00 46.63 1.73
1398 1401 3.595173 TGCGAGATGCTTAAAGTGCTAA 58.405 40.909 0.00 0.00 46.63 3.09
1399 1402 3.245518 TGCGAGATGCTTAAAGTGCTA 57.754 42.857 0.00 0.00 46.63 3.49
1400 1403 2.099141 TGCGAGATGCTTAAAGTGCT 57.901 45.000 0.00 0.00 46.63 4.40
1401 1404 3.103738 CAATGCGAGATGCTTAAAGTGC 58.896 45.455 0.00 0.00 46.63 4.40
1402 1405 4.604843 TCAATGCGAGATGCTTAAAGTG 57.395 40.909 0.00 0.00 46.63 3.16
1403 1406 4.697352 ACTTCAATGCGAGATGCTTAAAGT 59.303 37.500 0.00 0.00 46.63 2.66
1404 1407 5.227238 ACTTCAATGCGAGATGCTTAAAG 57.773 39.130 0.00 0.00 46.63 1.85
1405 1408 4.201714 CGACTTCAATGCGAGATGCTTAAA 60.202 41.667 0.00 0.00 46.63 1.52
1406 1409 3.306973 CGACTTCAATGCGAGATGCTTAA 59.693 43.478 0.00 0.00 46.63 1.85
1407 1410 2.860136 CGACTTCAATGCGAGATGCTTA 59.140 45.455 0.00 0.00 46.63 3.09
1408 1411 1.662629 CGACTTCAATGCGAGATGCTT 59.337 47.619 0.00 0.00 46.63 3.91
1409 1412 1.284657 CGACTTCAATGCGAGATGCT 58.715 50.000 0.00 0.00 46.63 3.79
1410 1413 0.315706 GCGACTTCAATGCGAGATGC 60.316 55.000 0.00 0.00 46.70 3.91
1411 1414 0.302890 GGCGACTTCAATGCGAGATG 59.697 55.000 0.00 0.00 0.00 2.90
1412 1415 0.176680 AGGCGACTTCAATGCGAGAT 59.823 50.000 0.00 0.00 37.44 2.75
1413 1416 1.591703 AGGCGACTTCAATGCGAGA 59.408 52.632 0.00 0.00 37.44 4.04
1414 1417 4.192000 AGGCGACTTCAATGCGAG 57.808 55.556 0.00 0.00 37.44 5.03
1424 1427 8.760541 ATCAATAAGAGCATTTGAAAGGCGACT 61.761 37.037 8.99 9.72 34.93 4.18
1425 1428 2.997485 AAGAGCATTTGAAAGGCGAC 57.003 45.000 8.99 7.66 0.00 5.19
1426 1429 4.699735 TCAATAAGAGCATTTGAAAGGCGA 59.300 37.500 8.99 0.00 0.00 5.54
1427 1430 4.985413 TCAATAAGAGCATTTGAAAGGCG 58.015 39.130 8.99 0.00 0.00 5.52
1428 1431 8.931385 TTAATCAATAAGAGCATTTGAAAGGC 57.069 30.769 6.43 6.43 33.45 4.35
1429 1432 9.028185 GCTTAATCAATAAGAGCATTTGAAAGG 57.972 33.333 0.00 0.00 43.16 3.11
1430 1433 9.577110 TGCTTAATCAATAAGAGCATTTGAAAG 57.423 29.630 0.00 0.00 43.16 2.62
1463 1466 8.638873 CCACATTATGTGTAGAAGTGGTAGATA 58.361 37.037 21.84 0.00 46.45 1.98
1464 1467 7.344612 TCCACATTATGTGTAGAAGTGGTAGAT 59.655 37.037 21.84 0.00 46.45 1.98
1465 1468 6.666113 TCCACATTATGTGTAGAAGTGGTAGA 59.334 38.462 21.84 6.52 46.45 2.59
1466 1469 6.873997 TCCACATTATGTGTAGAAGTGGTAG 58.126 40.000 21.84 4.43 46.45 3.18
1467 1470 6.860790 TCCACATTATGTGTAGAAGTGGTA 57.139 37.500 21.84 0.00 46.45 3.25
1468 1471 5.755409 TCCACATTATGTGTAGAAGTGGT 57.245 39.130 21.84 0.00 46.45 4.16
1469 1472 5.008019 GCATCCACATTATGTGTAGAAGTGG 59.992 44.000 21.84 6.28 46.45 4.00
1470 1473 5.277011 CGCATCCACATTATGTGTAGAAGTG 60.277 44.000 21.84 13.14 46.45 3.16
1471 1474 4.811024 CGCATCCACATTATGTGTAGAAGT 59.189 41.667 21.84 0.00 46.45 3.01
1472 1475 4.319046 GCGCATCCACATTATGTGTAGAAG 60.319 45.833 21.84 12.00 46.45 2.85
1473 1476 3.559655 GCGCATCCACATTATGTGTAGAA 59.440 43.478 21.84 6.94 46.45 2.10
1474 1477 3.130633 GCGCATCCACATTATGTGTAGA 58.869 45.455 21.84 14.08 46.45 2.59
1475 1478 2.871633 TGCGCATCCACATTATGTGTAG 59.128 45.455 21.84 12.87 46.45 2.74
1476 1479 2.911484 TGCGCATCCACATTATGTGTA 58.089 42.857 21.84 8.79 46.45 2.90
1477 1480 1.748950 TGCGCATCCACATTATGTGT 58.251 45.000 21.84 3.77 46.45 3.72
1479 1482 2.642427 TCTTGCGCATCCACATTATGT 58.358 42.857 12.75 0.00 0.00 2.29
1480 1483 3.313249 TCTTCTTGCGCATCCACATTATG 59.687 43.478 12.75 0.00 0.00 1.90
1481 1484 3.544684 TCTTCTTGCGCATCCACATTAT 58.455 40.909 12.75 0.00 0.00 1.28
1482 1485 2.984562 TCTTCTTGCGCATCCACATTA 58.015 42.857 12.75 0.00 0.00 1.90
1483 1486 1.825090 TCTTCTTGCGCATCCACATT 58.175 45.000 12.75 0.00 0.00 2.71
1484 1487 1.945394 GATCTTCTTGCGCATCCACAT 59.055 47.619 12.75 0.36 0.00 3.21
1485 1488 1.338960 TGATCTTCTTGCGCATCCACA 60.339 47.619 12.75 2.90 0.00 4.17
1486 1489 1.372582 TGATCTTCTTGCGCATCCAC 58.627 50.000 12.75 0.00 0.00 4.02
1487 1490 2.011947 CTTGATCTTCTTGCGCATCCA 58.988 47.619 12.75 0.00 0.00 3.41
1488 1491 2.031437 GTCTTGATCTTCTTGCGCATCC 59.969 50.000 12.75 0.00 0.00 3.51
1489 1492 2.674852 TGTCTTGATCTTCTTGCGCATC 59.325 45.455 12.75 4.96 0.00 3.91
1490 1493 2.703416 TGTCTTGATCTTCTTGCGCAT 58.297 42.857 12.75 0.00 0.00 4.73
1491 1494 2.168326 TGTCTTGATCTTCTTGCGCA 57.832 45.000 5.66 5.66 0.00 6.09
1492 1495 2.674852 TGATGTCTTGATCTTCTTGCGC 59.325 45.455 0.00 0.00 0.00 6.09
1493 1496 4.331992 ACATGATGTCTTGATCTTCTTGCG 59.668 41.667 0.00 0.00 0.00 4.85
1494 1497 5.814764 ACATGATGTCTTGATCTTCTTGC 57.185 39.130 0.00 0.00 0.00 4.01
1495 1498 7.465647 GCAGTACATGATGTCTTGATCTTCTTG 60.466 40.741 0.00 0.00 0.00 3.02
1496 1499 6.538021 GCAGTACATGATGTCTTGATCTTCTT 59.462 38.462 0.00 0.00 0.00 2.52
1497 1500 6.047870 GCAGTACATGATGTCTTGATCTTCT 58.952 40.000 0.00 0.00 0.00 2.85
1498 1501 6.047870 AGCAGTACATGATGTCTTGATCTTC 58.952 40.000 0.00 0.00 0.00 2.87
1499 1502 5.987098 AGCAGTACATGATGTCTTGATCTT 58.013 37.500 0.00 0.00 0.00 2.40
1500 1503 5.611128 AGCAGTACATGATGTCTTGATCT 57.389 39.130 0.00 0.00 0.00 2.75
1501 1504 6.276091 TGTAGCAGTACATGATGTCTTGATC 58.724 40.000 0.00 0.00 34.02 2.92
1502 1505 6.225981 TGTAGCAGTACATGATGTCTTGAT 57.774 37.500 0.00 3.29 34.02 2.57
1503 1506 5.659440 TGTAGCAGTACATGATGTCTTGA 57.341 39.130 0.00 0.00 34.02 3.02
1504 1507 6.915544 ATTGTAGCAGTACATGATGTCTTG 57.084 37.500 0.00 3.06 38.98 3.02
1505 1508 7.495934 GGTAATTGTAGCAGTACATGATGTCTT 59.504 37.037 0.00 0.00 38.98 3.01
1506 1509 6.986817 GGTAATTGTAGCAGTACATGATGTCT 59.013 38.462 0.00 0.00 38.98 3.41
1507 1510 6.986817 AGGTAATTGTAGCAGTACATGATGTC 59.013 38.462 0.00 0.00 38.98 3.06
1508 1511 6.889198 AGGTAATTGTAGCAGTACATGATGT 58.111 36.000 2.65 2.65 38.98 3.06
1509 1512 7.212976 AGAGGTAATTGTAGCAGTACATGATG 58.787 38.462 0.00 0.00 38.98 3.07
1510 1513 7.366847 AGAGGTAATTGTAGCAGTACATGAT 57.633 36.000 0.00 0.00 38.98 2.45
1511 1514 6.791867 AGAGGTAATTGTAGCAGTACATGA 57.208 37.500 0.00 0.00 38.98 3.07
1512 1515 6.818644 ACAAGAGGTAATTGTAGCAGTACATG 59.181 38.462 0.00 0.00 38.98 3.21
1513 1516 6.947464 ACAAGAGGTAATTGTAGCAGTACAT 58.053 36.000 0.00 0.00 38.98 2.29
1514 1517 6.354794 ACAAGAGGTAATTGTAGCAGTACA 57.645 37.500 0.00 0.00 39.06 2.90
1515 1518 7.488471 CAGTACAAGAGGTAATTGTAGCAGTAC 59.512 40.741 0.00 0.00 42.23 2.73
1516 1519 7.177921 ACAGTACAAGAGGTAATTGTAGCAGTA 59.822 37.037 0.00 0.00 42.23 2.74
1517 1520 6.014499 ACAGTACAAGAGGTAATTGTAGCAGT 60.014 38.462 0.00 0.00 42.23 4.40
1518 1521 6.398918 ACAGTACAAGAGGTAATTGTAGCAG 58.601 40.000 0.00 0.00 42.23 4.24
1519 1522 6.354794 ACAGTACAAGAGGTAATTGTAGCA 57.645 37.500 0.00 0.00 42.23 3.49
1520 1523 6.402226 GCAACAGTACAAGAGGTAATTGTAGC 60.402 42.308 0.00 0.00 42.23 3.58
1521 1524 6.874134 AGCAACAGTACAAGAGGTAATTGTAG 59.126 38.462 0.00 0.00 42.23 2.74
1522 1525 6.765403 AGCAACAGTACAAGAGGTAATTGTA 58.235 36.000 0.00 0.00 41.08 2.41
1523 1526 5.621193 AGCAACAGTACAAGAGGTAATTGT 58.379 37.500 0.00 0.00 43.15 2.71
1524 1527 6.649141 TGTAGCAACAGTACAAGAGGTAATTG 59.351 38.462 0.00 0.00 32.72 2.32
1525 1528 6.765403 TGTAGCAACAGTACAAGAGGTAATT 58.235 36.000 0.00 0.00 32.72 1.40
1526 1529 6.354794 TGTAGCAACAGTACAAGAGGTAAT 57.645 37.500 0.00 0.00 32.72 1.89
1527 1530 5.794726 TGTAGCAACAGTACAAGAGGTAA 57.205 39.130 0.00 0.00 32.72 2.85
1528 1531 5.995565 ATGTAGCAACAGTACAAGAGGTA 57.004 39.130 0.00 0.00 39.49 3.08
1529 1532 4.891992 ATGTAGCAACAGTACAAGAGGT 57.108 40.909 0.00 0.00 39.49 3.85
1530 1533 8.982685 CATAATATGTAGCAACAGTACAAGAGG 58.017 37.037 0.00 0.00 39.49 3.69
1531 1534 8.982685 CCATAATATGTAGCAACAGTACAAGAG 58.017 37.037 0.00 0.00 39.49 2.85
1532 1535 8.482943 ACCATAATATGTAGCAACAGTACAAGA 58.517 33.333 0.00 0.00 39.49 3.02
1533 1536 8.551205 CACCATAATATGTAGCAACAGTACAAG 58.449 37.037 0.00 0.00 39.49 3.16
1534 1537 8.261522 TCACCATAATATGTAGCAACAGTACAA 58.738 33.333 0.00 0.00 39.49 2.41
1535 1538 7.787028 TCACCATAATATGTAGCAACAGTACA 58.213 34.615 0.00 0.00 39.49 2.90
1536 1539 8.657074 TTCACCATAATATGTAGCAACAGTAC 57.343 34.615 0.00 0.00 39.49 2.73
1537 1540 9.104965 GTTTCACCATAATATGTAGCAACAGTA 57.895 33.333 0.00 0.00 39.49 2.74
1538 1541 7.829211 AGTTTCACCATAATATGTAGCAACAGT 59.171 33.333 0.00 0.00 39.49 3.55
1539 1542 8.213518 AGTTTCACCATAATATGTAGCAACAG 57.786 34.615 0.00 0.00 39.49 3.16
1540 1543 8.574251 AAGTTTCACCATAATATGTAGCAACA 57.426 30.769 0.00 0.00 40.69 3.33
1541 1544 9.289303 CAAAGTTTCACCATAATATGTAGCAAC 57.711 33.333 0.00 0.00 0.00 4.17
1542 1545 9.237187 TCAAAGTTTCACCATAATATGTAGCAA 57.763 29.630 0.00 0.00 0.00 3.91
1543 1546 8.800370 TCAAAGTTTCACCATAATATGTAGCA 57.200 30.769 0.00 0.00 0.00 3.49
1544 1547 8.893727 ACTCAAAGTTTCACCATAATATGTAGC 58.106 33.333 0.00 0.00 0.00 3.58
1546 1549 9.952030 TCACTCAAAGTTTCACCATAATATGTA 57.048 29.630 0.00 0.00 0.00 2.29
1547 1550 8.862325 TCACTCAAAGTTTCACCATAATATGT 57.138 30.769 0.00 0.00 0.00 2.29
1548 1551 9.941664 GATCACTCAAAGTTTCACCATAATATG 57.058 33.333 0.00 0.00 0.00 1.78
1549 1552 9.685276 TGATCACTCAAAGTTTCACCATAATAT 57.315 29.630 0.00 0.00 0.00 1.28
1550 1553 9.685276 ATGATCACTCAAAGTTTCACCATAATA 57.315 29.630 0.00 0.00 34.37 0.98
1551 1554 8.585471 ATGATCACTCAAAGTTTCACCATAAT 57.415 30.769 0.00 0.00 34.37 1.28
1552 1555 8.946085 GTATGATCACTCAAAGTTTCACCATAA 58.054 33.333 0.00 0.00 34.37 1.90
1553 1556 7.277760 CGTATGATCACTCAAAGTTTCACCATA 59.722 37.037 0.00 0.00 34.37 2.74
1554 1557 6.092670 CGTATGATCACTCAAAGTTTCACCAT 59.907 38.462 0.00 0.00 34.37 3.55
1555 1558 5.408299 CGTATGATCACTCAAAGTTTCACCA 59.592 40.000 0.00 0.00 34.37 4.17
1556 1559 5.671329 GCGTATGATCACTCAAAGTTTCACC 60.671 44.000 0.00 0.00 34.37 4.02
1557 1560 5.107104 TGCGTATGATCACTCAAAGTTTCAC 60.107 40.000 0.00 0.00 34.37 3.18
1558 1561 4.994217 TGCGTATGATCACTCAAAGTTTCA 59.006 37.500 0.00 0.00 34.37 2.69
1559 1562 5.530519 TGCGTATGATCACTCAAAGTTTC 57.469 39.130 0.00 0.00 34.37 2.78
1560 1563 5.674569 GCATGCGTATGATCACTCAAAGTTT 60.675 40.000 18.28 0.00 36.36 2.66
1561 1564 4.201851 GCATGCGTATGATCACTCAAAGTT 60.202 41.667 18.28 0.00 36.36 2.66
1562 1565 3.310774 GCATGCGTATGATCACTCAAAGT 59.689 43.478 18.28 0.00 36.36 2.66
1563 1566 3.603173 CGCATGCGTATGATCACTCAAAG 60.603 47.826 31.33 0.00 36.36 2.77
1564 1567 2.284952 CGCATGCGTATGATCACTCAAA 59.715 45.455 31.33 0.00 36.36 2.69
1565 1568 1.860326 CGCATGCGTATGATCACTCAA 59.140 47.619 31.33 0.00 36.36 3.02
1566 1569 1.066908 TCGCATGCGTATGATCACTCA 59.933 47.619 36.50 12.67 40.74 3.41
1567 1570 1.718178 CTCGCATGCGTATGATCACTC 59.282 52.381 36.50 0.00 40.74 3.51
1568 1571 1.338020 TCTCGCATGCGTATGATCACT 59.662 47.619 36.50 0.00 40.74 3.41
1569 1572 1.770957 TCTCGCATGCGTATGATCAC 58.229 50.000 36.50 0.00 40.74 3.06
1570 1573 2.730550 ATCTCGCATGCGTATGATCA 57.269 45.000 36.50 16.93 40.74 2.92
1571 1574 6.812481 TTTATATCTCGCATGCGTATGATC 57.188 37.500 36.50 0.00 40.74 2.92
1572 1575 7.492344 TCAATTTATATCTCGCATGCGTATGAT 59.508 33.333 36.50 33.00 40.74 2.45
1573 1576 6.811170 TCAATTTATATCTCGCATGCGTATGA 59.189 34.615 36.50 29.97 40.74 2.15
1574 1577 6.992766 TCAATTTATATCTCGCATGCGTATG 58.007 36.000 36.50 26.46 40.74 2.39
1575 1578 7.306225 CGATCAATTTATATCTCGCATGCGTAT 60.306 37.037 36.50 30.24 40.74 3.06
1576 1579 6.020678 CGATCAATTTATATCTCGCATGCGTA 60.021 38.462 36.50 26.49 40.74 4.42
1577 1580 5.220284 CGATCAATTTATATCTCGCATGCGT 60.220 40.000 36.50 22.12 40.74 5.24
1578 1581 5.004726 TCGATCAATTTATATCTCGCATGCG 59.995 40.000 33.61 33.61 41.35 4.73
1579 1582 6.336514 TCGATCAATTTATATCTCGCATGC 57.663 37.500 7.91 7.91 0.00 4.06
1580 1583 8.123445 TGATCGATCAATTTATATCTCGCATG 57.877 34.615 25.44 0.00 33.08 4.06
1581 1584 8.883954 ATGATCGATCAATTTATATCTCGCAT 57.116 30.769 30.41 6.68 40.69 4.73
1582 1585 9.801873 TTATGATCGATCAATTTATATCTCGCA 57.198 29.630 30.41 3.51 40.69 5.10
1595 1598 9.297037 TCTTGTACCTAGATTATGATCGATCAA 57.703 33.333 30.41 16.68 40.69 2.57
1596 1599 8.863872 TCTTGTACCTAGATTATGATCGATCA 57.136 34.615 29.09 29.09 41.70 2.92
1609 1612 9.621629 TCACAAAAAGAAAATCTTGTACCTAGA 57.378 29.630 0.00 0.00 36.71 2.43
1612 1615 9.533253 CATTCACAAAAAGAAAATCTTGTACCT 57.467 29.630 0.00 0.00 36.71 3.08
1613 1616 8.764287 CCATTCACAAAAAGAAAATCTTGTACC 58.236 33.333 0.00 0.00 36.71 3.34
1614 1617 8.764287 CCCATTCACAAAAAGAAAATCTTGTAC 58.236 33.333 0.00 0.00 36.71 2.90
1615 1618 8.482128 ACCCATTCACAAAAAGAAAATCTTGTA 58.518 29.630 0.00 0.00 36.71 2.41
1616 1619 7.337938 ACCCATTCACAAAAAGAAAATCTTGT 58.662 30.769 0.00 0.00 36.71 3.16
1617 1620 7.790823 ACCCATTCACAAAAAGAAAATCTTG 57.209 32.000 0.00 0.00 36.71 3.02
1618 1621 7.828717 ACAACCCATTCACAAAAAGAAAATCTT 59.171 29.630 0.00 0.00 38.59 2.40
1619 1622 7.337938 ACAACCCATTCACAAAAAGAAAATCT 58.662 30.769 0.00 0.00 0.00 2.40
1620 1623 7.552458 ACAACCCATTCACAAAAAGAAAATC 57.448 32.000 0.00 0.00 0.00 2.17
1621 1624 7.936496 AACAACCCATTCACAAAAAGAAAAT 57.064 28.000 0.00 0.00 0.00 1.82
1622 1625 9.103861 GATAACAACCCATTCACAAAAAGAAAA 57.896 29.630 0.00 0.00 0.00 2.29
1623 1626 7.436673 CGATAACAACCCATTCACAAAAAGAAA 59.563 33.333 0.00 0.00 0.00 2.52
1624 1627 6.920758 CGATAACAACCCATTCACAAAAAGAA 59.079 34.615 0.00 0.00 0.00 2.52
1625 1628 6.442952 CGATAACAACCCATTCACAAAAAGA 58.557 36.000 0.00 0.00 0.00 2.52
1626 1629 5.118510 GCGATAACAACCCATTCACAAAAAG 59.881 40.000 0.00 0.00 0.00 2.27
1627 1630 4.985409 GCGATAACAACCCATTCACAAAAA 59.015 37.500 0.00 0.00 0.00 1.94
1628 1631 4.038042 TGCGATAACAACCCATTCACAAAA 59.962 37.500 0.00 0.00 0.00 2.44
1629 1632 3.570125 TGCGATAACAACCCATTCACAAA 59.430 39.130 0.00 0.00 0.00 2.83
1630 1633 3.149981 TGCGATAACAACCCATTCACAA 58.850 40.909 0.00 0.00 0.00 3.33
1631 1634 2.746904 CTGCGATAACAACCCATTCACA 59.253 45.455 0.00 0.00 0.00 3.58
1632 1635 3.006940 TCTGCGATAACAACCCATTCAC 58.993 45.455 0.00 0.00 0.00 3.18
1633 1636 3.342377 TCTGCGATAACAACCCATTCA 57.658 42.857 0.00 0.00 0.00 2.57
1634 1637 4.096382 ACATTCTGCGATAACAACCCATTC 59.904 41.667 0.00 0.00 0.00 2.67
1635 1638 4.016444 ACATTCTGCGATAACAACCCATT 58.984 39.130 0.00 0.00 0.00 3.16
1636 1639 3.620488 ACATTCTGCGATAACAACCCAT 58.380 40.909 0.00 0.00 0.00 4.00
1637 1640 3.006940 GACATTCTGCGATAACAACCCA 58.993 45.455 0.00 0.00 0.00 4.51
1638 1641 3.006940 TGACATTCTGCGATAACAACCC 58.993 45.455 0.00 0.00 0.00 4.11
1639 1642 4.094887 ACATGACATTCTGCGATAACAACC 59.905 41.667 0.00 0.00 0.00 3.77
1640 1643 5.023920 CACATGACATTCTGCGATAACAAC 58.976 41.667 0.00 0.00 0.00 3.32
1641 1644 4.094739 CCACATGACATTCTGCGATAACAA 59.905 41.667 0.00 0.00 0.00 2.83
1642 1645 3.622612 CCACATGACATTCTGCGATAACA 59.377 43.478 0.00 0.00 0.00 2.41
1643 1646 3.623060 ACCACATGACATTCTGCGATAAC 59.377 43.478 0.00 0.00 0.00 1.89
1644 1647 3.622612 CACCACATGACATTCTGCGATAA 59.377 43.478 0.00 0.00 0.00 1.75
1647 1650 1.441738 CACCACATGACATTCTGCGA 58.558 50.000 0.00 0.00 0.00 5.10
1651 1654 0.323725 GGCCCACCACATGACATTCT 60.324 55.000 0.00 0.00 35.26 2.40
1682 1685 6.258947 GGGTAATGTACTCTGCTGAGAATTTC 59.741 42.308 25.49 17.05 42.73 2.17
1686 1689 4.353777 AGGGTAATGTACTCTGCTGAGAA 58.646 43.478 25.49 11.69 42.73 2.87
1689 1692 3.708451 TGAGGGTAATGTACTCTGCTGA 58.292 45.455 0.00 0.00 40.26 4.26
1695 1698 5.128827 TGTCCTTGATGAGGGTAATGTACTC 59.871 44.000 0.00 0.00 46.31 2.59
1723 1726 6.258947 TCGAACACTTGTCACAACATTATTGA 59.741 34.615 0.00 0.00 34.73 2.57
1776 1779 5.047731 CCTGATGCAGTCCTATCTTAATCGA 60.048 44.000 0.00 0.00 0.00 3.59
1829 1832 0.552363 TGACCCCATCCATCACCATG 59.448 55.000 0.00 0.00 0.00 3.66
1830 1833 0.552848 GTGACCCCATCCATCACCAT 59.447 55.000 0.00 0.00 37.39 3.55
1843 1846 2.092914 CCTTGTAGATCCCTTGTGACCC 60.093 54.545 0.00 0.00 0.00 4.46
1857 1860 4.594920 ACACCATGGGATATCTCCTTGTAG 59.405 45.833 18.09 13.58 41.74 2.74
1902 1905 2.612672 TCCGACTATCGTCAACTAGCAG 59.387 50.000 0.00 0.00 40.23 4.24
1927 1931 9.725206 TCCATAACTCTAACTTCCTATTTACCT 57.275 33.333 0.00 0.00 0.00 3.08
1964 1968 4.302559 AAGCCTAAACCCTTTCGATTCT 57.697 40.909 0.00 0.00 0.00 2.40
2042 2046 3.549794 GCCATCAATGCTAACTTCCTCT 58.450 45.455 0.00 0.00 0.00 3.69
2048 2052 2.756760 CACTTGGCCATCAATGCTAACT 59.243 45.455 6.09 0.00 34.45 2.24
2055 2059 1.640670 AGGTACCACTTGGCCATCAAT 59.359 47.619 15.94 0.00 39.32 2.57
2066 2070 2.249139 GTGTCCTTCTGAGGTACCACT 58.751 52.381 15.94 0.00 43.97 4.00
2087 2091 6.925165 GCAACATTGATCCCAAATATCGAAAT 59.075 34.615 0.00 0.00 35.67 2.17
2093 2097 3.321682 CCCGCAACATTGATCCCAAATAT 59.678 43.478 0.00 0.00 35.67 1.28
2102 2106 1.105457 CATCCACCCGCAACATTGAT 58.895 50.000 0.00 0.00 0.00 2.57
2113 2117 2.711009 TCATCAATACTCCCATCCACCC 59.289 50.000 0.00 0.00 0.00 4.61
2116 2120 5.370584 ACATCTTCATCAATACTCCCATCCA 59.629 40.000 0.00 0.00 0.00 3.41
2144 2148 3.138304 CCATCCGGCTTTGATTCGATAA 58.862 45.455 0.00 0.00 0.00 1.75
2145 2149 2.367241 TCCATCCGGCTTTGATTCGATA 59.633 45.455 0.00 0.00 0.00 2.92
2181 2185 2.369860 TGTCACAGAGAATGCCAGAAGT 59.630 45.455 0.00 0.00 0.00 3.01
2211 2215 5.127031 AGAACTTGCCTTTTAGCTTTTGTGA 59.873 36.000 0.00 0.00 0.00 3.58
2246 2250 5.355630 CCATACAAACATTATGGGTCGAACA 59.644 40.000 1.31 0.00 41.66 3.18
2256 2260 4.035558 CACTCAGCGCCATACAAACATTAT 59.964 41.667 2.29 0.00 0.00 1.28
2257 2261 3.373748 CACTCAGCGCCATACAAACATTA 59.626 43.478 2.29 0.00 0.00 1.90
2262 2266 1.535028 CAACACTCAGCGCCATACAAA 59.465 47.619 2.29 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.