Multiple sequence alignment - TraesCS7B01G438300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G438300 chr7B 100.000 4275 0 0 1 4275 704285886 704290160 0.000000e+00 7895.0
1 TraesCS7B01G438300 chr7B 86.375 800 68 15 3496 4275 704318409 704317631 0.000000e+00 835.0
2 TraesCS7B01G438300 chr7B 87.422 644 59 10 3646 4275 704547806 704548441 0.000000e+00 721.0
3 TraesCS7B01G438300 chr7B 87.338 616 60 5 3672 4275 728933706 728934315 0.000000e+00 689.0
4 TraesCS7B01G438300 chr7B 89.341 516 49 4 3760 4275 704637417 704636908 1.000000e-180 643.0
5 TraesCS7B01G438300 chr7B 81.727 498 71 12 2639 3134 704627400 704627879 8.610000e-107 398.0
6 TraesCS7B01G438300 chr7B 87.013 231 24 3 2155 2379 728933037 728933267 5.490000e-64 255.0
7 TraesCS7B01G438300 chr7B 93.023 43 3 0 3434 3476 704318343 704318301 3.570000e-06 63.9
8 TraesCS7B01G438300 chr7D 89.110 1506 99 31 1816 3277 613624470 613625954 0.000000e+00 1812.0
9 TraesCS7B01G438300 chr7D 89.166 923 63 13 3366 4275 613625963 613626861 0.000000e+00 1116.0
10 TraesCS7B01G438300 chr7D 87.583 749 51 21 748 1487 613623491 613624206 0.000000e+00 830.0
11 TraesCS7B01G438300 chr7D 85.642 787 76 16 3502 4275 627449588 627450350 0.000000e+00 793.0
12 TraesCS7B01G438300 chr7D 87.263 581 54 12 3709 4275 613661554 613660980 0.000000e+00 645.0
13 TraesCS7B01G438300 chr7D 89.324 281 11 6 342 621 613623040 613623302 6.850000e-88 335.0
14 TraesCS7B01G438300 chr7D 84.513 226 11 3 35 252 613622772 613622981 7.250000e-48 202.0
15 TraesCS7B01G438300 chr7D 92.045 88 7 0 3281 3368 346239543 346239630 1.610000e-24 124.0
16 TraesCS7B01G438300 chr7D 92.941 85 6 0 3283 3367 493547811 493547895 1.610000e-24 124.0
17 TraesCS7B01G438300 chr7D 78.740 127 19 3 433 555 601787953 601788075 1.270000e-10 78.7
18 TraesCS7B01G438300 chr7A 84.655 782 83 14 3506 4275 705296892 705297648 0.000000e+00 745.0
19 TraesCS7B01G438300 chr7A 85.512 635 66 16 3659 4275 705332672 705332046 1.300000e-179 640.0
20 TraesCS7B01G438300 chr7A 81.062 565 78 18 2639 3201 705296220 705296757 1.420000e-114 424.0
21 TraesCS7B01G438300 chr7A 81.119 143 12 9 433 563 107911476 107911615 2.720000e-17 100.0
22 TraesCS7B01G438300 chr2D 83.189 577 54 26 1113 1667 118382965 118382410 4.970000e-134 488.0
23 TraesCS7B01G438300 chr2D 82.753 574 56 25 1116 1667 575269850 575269298 5.000000e-129 472.0
24 TraesCS7B01G438300 chr2D 88.889 234 24 2 1816 2049 118382170 118381939 1.950000e-73 287.0
25 TraesCS7B01G438300 chr2D 88.462 234 25 2 1816 2049 575269058 575268827 9.050000e-72 281.0
26 TraesCS7B01G438300 chr2D 88.412 233 25 2 1817 2049 263422867 263422637 3.260000e-71 279.0
27 TraesCS7B01G438300 chr2D 85.093 161 18 3 1663 1820 118382356 118382199 4.420000e-35 159.0
28 TraesCS7B01G438300 chr2D 85.093 161 18 3 1663 1820 575269244 575269087 4.420000e-35 159.0
29 TraesCS7B01G438300 chr2D 84.472 161 19 3 1663 1820 263423054 263422897 2.060000e-33 154.0
30 TraesCS7B01G438300 chr2D 94.118 85 5 0 3283 3367 270850341 270850257 3.470000e-26 130.0
31 TraesCS7B01G438300 chr2D 94.118 85 5 0 3283 3367 636385947 636386031 3.470000e-26 130.0
32 TraesCS7B01G438300 chr2D 92.941 85 6 0 3283 3367 454026179 454026263 1.610000e-24 124.0
33 TraesCS7B01G438300 chr2D 91.860 86 7 0 3282 3367 496636077 496635992 2.090000e-23 121.0
34 TraesCS7B01G438300 chr6A 82.496 577 58 28 1113 1667 526164808 526164253 2.330000e-127 466.0
35 TraesCS7B01G438300 chr6A 85.714 161 17 3 1663 1820 526164199 526164042 9.510000e-37 165.0
36 TraesCS7B01G438300 chr2B 82.343 572 61 24 1113 1664 706585138 706585689 1.080000e-125 460.0
37 TraesCS7B01G438300 chr2B 88.889 234 24 2 1816 2049 706585932 706586163 1.950000e-73 287.0
38 TraesCS7B01G438300 chr2B 84.472 161 19 3 1663 1820 706585746 706585903 2.060000e-33 154.0
39 TraesCS7B01G438300 chr2B 94.118 85 5 0 3283 3367 63783726 63783810 3.470000e-26 130.0
40 TraesCS7B01G438300 chr2B 89.157 83 4 3 477 555 486590479 486590398 9.780000e-17 99.0
41 TraesCS7B01G438300 chr4D 83.532 504 57 15 1113 1610 264461636 264462119 8.430000e-122 448.0
42 TraesCS7B01G438300 chr4D 88.889 234 24 2 1816 2049 264462431 264462662 1.950000e-73 287.0
43 TraesCS7B01G438300 chr4D 85.093 161 18 3 1663 1820 264462245 264462402 4.420000e-35 159.0
44 TraesCS7B01G438300 chr4D 94.118 85 5 0 3283 3367 434161614 434161698 3.470000e-26 130.0
45 TraesCS7B01G438300 chr4A 80.936 577 66 29 1113 1667 359640070 359639516 2.380000e-112 416.0
46 TraesCS7B01G438300 chr4A 88.034 234 26 2 1816 2049 359639276 359639045 4.210000e-70 276.0
47 TraesCS7B01G438300 chr4A 85.093 161 18 3 1663 1820 359639462 359639305 4.420000e-35 159.0
48 TraesCS7B01G438300 chr3B 86.898 374 25 8 980 1353 246436334 246436683 8.610000e-107 398.0
49 TraesCS7B01G438300 chr3B 87.857 280 24 4 1113 1392 739839938 739840207 1.920000e-83 320.0
50 TraesCS7B01G438300 chr3B 88.462 234 25 2 1816 2049 739841079 739841310 9.050000e-72 281.0
51 TraesCS7B01G438300 chr3B 79.036 415 44 29 1443 1820 739840642 739841050 1.190000e-60 244.0
52 TraesCS7B01G438300 chr3B 89.209 139 15 0 1911 2049 758390654 758390792 1.580000e-39 174.0
53 TraesCS7B01G438300 chr3B 78.261 138 16 10 431 555 755859687 755859823 4.580000e-10 76.8
54 TraesCS7B01G438300 chr5B 84.915 411 37 11 980 1390 203065499 203065884 4.010000e-105 392.0
55 TraesCS7B01G438300 chr5B 95.349 86 4 0 3283 3368 647887163 647887078 2.070000e-28 137.0
56 TraesCS7B01G438300 chr5B 84.800 125 13 3 1663 1784 203112839 203112960 2.090000e-23 121.0
57 TraesCS7B01G438300 chr5B 78.607 201 22 17 376 570 66287387 66287202 3.490000e-21 113.0
58 TraesCS7B01G438300 chr5B 89.062 64 7 0 1547 1610 203112650 203112713 3.540000e-11 80.5
59 TraesCS7B01G438300 chr5B 88.889 54 4 2 376 429 496984530 496984581 9.920000e-07 65.8
60 TraesCS7B01G438300 chr6D 86.280 328 27 7 980 1307 39494960 39495269 1.470000e-89 340.0
61 TraesCS7B01G438300 chr6D 94.444 54 3 0 2562 2615 249489221 249489274 2.740000e-12 84.2
62 TraesCS7B01G438300 chr5D 78.543 247 29 17 331 562 454212970 454213207 1.600000e-29 141.0
63 TraesCS7B01G438300 chr5D 80.147 136 16 6 428 553 374319477 374319611 1.640000e-14 91.6
64 TraesCS7B01G438300 chr1D 84.800 125 13 3 1663 1784 209725037 209724916 2.090000e-23 121.0
65 TraesCS7B01G438300 chr1D 94.366 71 4 0 1540 1610 209725233 209725163 4.520000e-20 110.0
66 TraesCS7B01G438300 chr1D 97.727 44 1 0 2572 2615 209571933 209571890 4.580000e-10 76.8
67 TraesCS7B01G438300 chr5A 76.285 253 35 21 330 566 573605311 573605554 1.260000e-20 111.0
68 TraesCS7B01G438300 chr5A 76.271 236 31 18 332 549 573605079 573605307 7.560000e-18 102.0
69 TraesCS7B01G438300 chr5A 82.692 104 11 6 331 430 573605436 573605536 7.620000e-13 86.1
70 TraesCS7B01G438300 chr5A 75.000 200 24 19 376 555 692784094 692783901 7.670000e-08 69.4
71 TraesCS7B01G438300 chr6B 76.279 215 23 16 372 562 194867907 194867697 5.890000e-14 89.8
72 TraesCS7B01G438300 chr1A 79.000 100 14 5 334 429 551229161 551229065 1.280000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G438300 chr7B 704285886 704290160 4274 False 7895.000000 7895 100.000000 1 4275 1 chr7B.!!$F1 4274
1 TraesCS7B01G438300 chr7B 704547806 704548441 635 False 721.000000 721 87.422000 3646 4275 1 chr7B.!!$F2 629
2 TraesCS7B01G438300 chr7B 704636908 704637417 509 True 643.000000 643 89.341000 3760 4275 1 chr7B.!!$R1 515
3 TraesCS7B01G438300 chr7B 728933037 728934315 1278 False 472.000000 689 87.175500 2155 4275 2 chr7B.!!$F4 2120
4 TraesCS7B01G438300 chr7B 704317631 704318409 778 True 449.450000 835 89.699000 3434 4275 2 chr7B.!!$R2 841
5 TraesCS7B01G438300 chr7D 613622772 613626861 4089 False 859.000000 1812 87.939200 35 4275 5 chr7D.!!$F5 4240
6 TraesCS7B01G438300 chr7D 627449588 627450350 762 False 793.000000 793 85.642000 3502 4275 1 chr7D.!!$F4 773
7 TraesCS7B01G438300 chr7D 613660980 613661554 574 True 645.000000 645 87.263000 3709 4275 1 chr7D.!!$R1 566
8 TraesCS7B01G438300 chr7A 705332046 705332672 626 True 640.000000 640 85.512000 3659 4275 1 chr7A.!!$R1 616
9 TraesCS7B01G438300 chr7A 705296220 705297648 1428 False 584.500000 745 82.858500 2639 4275 2 chr7A.!!$F2 1636
10 TraesCS7B01G438300 chr2D 118381939 118382965 1026 True 311.333333 488 85.723667 1113 2049 3 chr2D.!!$R3 936
11 TraesCS7B01G438300 chr2D 575268827 575269850 1023 True 304.000000 472 85.436000 1116 2049 3 chr2D.!!$R5 933
12 TraesCS7B01G438300 chr6A 526164042 526164808 766 True 315.500000 466 84.105000 1113 1820 2 chr6A.!!$R1 707
13 TraesCS7B01G438300 chr2B 706585138 706586163 1025 False 300.333333 460 85.234667 1113 2049 3 chr2B.!!$F2 936
14 TraesCS7B01G438300 chr4D 264461636 264462662 1026 False 298.000000 448 85.838000 1113 2049 3 chr4D.!!$F2 936
15 TraesCS7B01G438300 chr4A 359639045 359640070 1025 True 283.666667 416 84.687667 1113 2049 3 chr4A.!!$R1 936
16 TraesCS7B01G438300 chr3B 739839938 739841310 1372 False 281.666667 320 85.118333 1113 2049 3 chr3B.!!$F4 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 662 0.099436 GATGTGGCGCTGTGAAATCC 59.901 55.0 7.64 0.0 0.00 3.01 F
1839 2515 0.035458 GCACCCTGTTGCTCTGTACT 59.965 55.0 0.00 0.0 39.59 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2696 0.039074 ACAAGAGGAACGAGCAGACG 60.039 55.0 0.0 0.0 39.31 4.18 R
3637 4436 0.036010 CATGGCTTGGGAGTTCTCGT 60.036 55.0 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.942163 ATGTCTAATAGTGGGCTGATACAT 57.058 37.500 0.00 0.00 0.00 2.29
24 25 6.101650 TGTCTAATAGTGGGCTGATACATG 57.898 41.667 0.00 0.00 0.00 3.21
25 26 4.932200 GTCTAATAGTGGGCTGATACATGC 59.068 45.833 0.00 0.00 0.00 4.06
26 27 3.862877 AATAGTGGGCTGATACATGCA 57.137 42.857 0.00 0.00 0.00 3.96
27 28 2.620251 TAGTGGGCTGATACATGCAC 57.380 50.000 0.00 0.00 0.00 4.57
28 29 0.462581 AGTGGGCTGATACATGCACG 60.463 55.000 0.00 0.00 34.94 5.34
29 30 0.461870 GTGGGCTGATACATGCACGA 60.462 55.000 0.00 0.00 34.94 4.35
30 31 0.461870 TGGGCTGATACATGCACGAC 60.462 55.000 0.00 0.00 34.94 4.34
31 32 0.461870 GGGCTGATACATGCACGACA 60.462 55.000 0.00 0.00 0.00 4.35
32 33 0.652592 GGCTGATACATGCACGACAC 59.347 55.000 0.00 0.00 0.00 3.67
33 34 1.358877 GCTGATACATGCACGACACA 58.641 50.000 0.00 0.00 0.00 3.72
145 146 1.307866 TGGGAAGGAGGGGTGGATC 60.308 63.158 0.00 0.00 0.00 3.36
166 167 2.135933 GAACAAATCGATCGCTAGGGG 58.864 52.381 11.09 0.02 0.00 4.79
167 168 0.393077 ACAAATCGATCGCTAGGGGG 59.607 55.000 11.09 0.00 0.00 5.40
168 169 0.393077 CAAATCGATCGCTAGGGGGT 59.607 55.000 11.09 0.00 0.00 4.95
169 170 0.393077 AAATCGATCGCTAGGGGGTG 59.607 55.000 11.09 0.00 0.00 4.61
170 171 2.100879 AATCGATCGCTAGGGGGTGC 62.101 60.000 11.09 0.00 0.00 5.01
171 172 3.227276 CGATCGCTAGGGGGTGCT 61.227 66.667 0.26 0.00 0.00 4.40
231 240 3.853104 GCCAAAGGCCCAATTTACC 57.147 52.632 0.00 0.00 44.06 2.85
284 317 9.837525 TTAACAAAATGCCATGAAAAATATTGC 57.162 25.926 0.00 0.00 0.00 3.56
285 318 7.690952 ACAAAATGCCATGAAAAATATTGCT 57.309 28.000 0.00 0.00 0.00 3.91
286 319 8.113173 ACAAAATGCCATGAAAAATATTGCTT 57.887 26.923 0.00 0.00 0.00 3.91
287 320 8.578151 ACAAAATGCCATGAAAAATATTGCTTT 58.422 25.926 0.00 0.00 0.00 3.51
290 323 9.452287 AAATGCCATGAAAAATATTGCTTTACT 57.548 25.926 0.00 0.00 0.00 2.24
291 324 9.452287 AATGCCATGAAAAATATTGCTTTACTT 57.548 25.926 0.00 0.00 0.00 2.24
292 325 8.845413 TGCCATGAAAAATATTGCTTTACTTT 57.155 26.923 0.00 0.00 0.00 2.66
293 326 9.935241 TGCCATGAAAAATATTGCTTTACTTTA 57.065 25.926 0.00 0.00 0.00 1.85
301 334 8.731275 AAATATTGCTTTACTTTATTTGCCCC 57.269 30.769 0.00 0.00 0.00 5.80
302 335 5.753721 ATTGCTTTACTTTATTTGCCCCA 57.246 34.783 0.00 0.00 0.00 4.96
303 336 4.529109 TGCTTTACTTTATTTGCCCCAC 57.471 40.909 0.00 0.00 0.00 4.61
304 337 4.156477 TGCTTTACTTTATTTGCCCCACT 58.844 39.130 0.00 0.00 0.00 4.00
305 338 4.021544 TGCTTTACTTTATTTGCCCCACTG 60.022 41.667 0.00 0.00 0.00 3.66
306 339 4.021456 GCTTTACTTTATTTGCCCCACTGT 60.021 41.667 0.00 0.00 0.00 3.55
307 340 5.461032 TTTACTTTATTTGCCCCACTGTG 57.539 39.130 0.00 0.00 0.00 3.66
308 341 3.237268 ACTTTATTTGCCCCACTGTGA 57.763 42.857 9.86 0.00 0.00 3.58
309 342 3.157087 ACTTTATTTGCCCCACTGTGAG 58.843 45.455 9.86 0.00 0.00 3.51
310 343 3.181434 ACTTTATTTGCCCCACTGTGAGA 60.181 43.478 9.86 0.00 0.00 3.27
311 344 3.517296 TTATTTGCCCCACTGTGAGAA 57.483 42.857 9.86 0.00 0.00 2.87
312 345 2.380064 ATTTGCCCCACTGTGAGAAA 57.620 45.000 9.86 0.00 0.00 2.52
313 346 1.398692 TTTGCCCCACTGTGAGAAAC 58.601 50.000 9.86 0.00 0.00 2.78
314 347 0.467290 TTGCCCCACTGTGAGAAACC 60.467 55.000 9.86 0.00 0.00 3.27
315 348 1.603739 GCCCCACTGTGAGAAACCC 60.604 63.158 9.86 0.00 0.00 4.11
316 349 1.074951 CCCCACTGTGAGAAACCCC 59.925 63.158 9.86 0.00 0.00 4.95
317 350 1.715019 CCCCACTGTGAGAAACCCCA 61.715 60.000 9.86 0.00 0.00 4.96
318 351 0.405585 CCCACTGTGAGAAACCCCAT 59.594 55.000 9.86 0.00 0.00 4.00
319 352 1.633432 CCCACTGTGAGAAACCCCATA 59.367 52.381 9.86 0.00 0.00 2.74
320 353 2.041081 CCCACTGTGAGAAACCCCATAA 59.959 50.000 9.86 0.00 0.00 1.90
321 354 3.499563 CCCACTGTGAGAAACCCCATAAA 60.500 47.826 9.86 0.00 0.00 1.40
322 355 4.148838 CCACTGTGAGAAACCCCATAAAA 58.851 43.478 9.86 0.00 0.00 1.52
323 356 4.586841 CCACTGTGAGAAACCCCATAAAAA 59.413 41.667 9.86 0.00 0.00 1.94
324 357 5.245977 CCACTGTGAGAAACCCCATAAAAAT 59.754 40.000 9.86 0.00 0.00 1.82
325 358 6.389906 CACTGTGAGAAACCCCATAAAAATC 58.610 40.000 0.32 0.00 0.00 2.17
326 359 6.015519 CACTGTGAGAAACCCCATAAAAATCA 60.016 38.462 0.32 0.00 0.00 2.57
327 360 6.015434 ACTGTGAGAAACCCCATAAAAATCAC 60.015 38.462 0.00 0.00 36.08 3.06
328 361 5.835819 TGTGAGAAACCCCATAAAAATCACA 59.164 36.000 0.00 0.00 41.42 3.58
329 362 6.496565 TGTGAGAAACCCCATAAAAATCACAT 59.503 34.615 0.00 0.00 39.49 3.21
330 363 7.671819 TGTGAGAAACCCCATAAAAATCACATA 59.328 33.333 0.00 0.00 39.49 2.29
331 364 8.527810 GTGAGAAACCCCATAAAAATCACATAA 58.472 33.333 0.00 0.00 35.70 1.90
332 365 9.265862 TGAGAAACCCCATAAAAATCACATAAT 57.734 29.630 0.00 0.00 0.00 1.28
503 537 9.689501 AAAAATTCCATCAATAAAGAATGCCAT 57.310 25.926 0.00 0.00 0.00 4.40
504 538 8.897872 AAATTCCATCAATAAAGAATGCCATC 57.102 30.769 0.00 0.00 0.00 3.51
505 539 7.850935 ATTCCATCAATAAAGAATGCCATCT 57.149 32.000 0.00 0.00 0.00 2.90
583 617 2.070783 GACCGTTCGCTGGATTTTACA 58.929 47.619 0.00 0.00 0.00 2.41
591 625 4.250464 TCGCTGGATTTTACACTTACAGG 58.750 43.478 0.00 0.00 0.00 4.00
621 655 1.340889 ACAAATTTGATGTGGCGCTGT 59.659 42.857 24.64 0.00 0.00 4.40
622 656 1.722464 CAAATTTGATGTGGCGCTGTG 59.278 47.619 13.08 0.00 0.00 3.66
623 657 1.246649 AATTTGATGTGGCGCTGTGA 58.753 45.000 7.64 0.00 0.00 3.58
624 658 1.246649 ATTTGATGTGGCGCTGTGAA 58.753 45.000 7.64 0.00 0.00 3.18
625 659 1.028130 TTTGATGTGGCGCTGTGAAA 58.972 45.000 7.64 0.00 0.00 2.69
626 660 1.246649 TTGATGTGGCGCTGTGAAAT 58.753 45.000 7.64 0.00 0.00 2.17
627 661 0.804364 TGATGTGGCGCTGTGAAATC 59.196 50.000 7.64 3.38 0.00 2.17
628 662 0.099436 GATGTGGCGCTGTGAAATCC 59.901 55.000 7.64 0.00 0.00 3.01
631 680 0.955428 GTGGCGCTGTGAAATCCTGA 60.955 55.000 7.64 0.00 0.00 3.86
662 711 1.610624 GGTCGCTGTGAAATCCTTCCA 60.611 52.381 0.00 0.00 0.00 3.53
663 712 2.359900 GTCGCTGTGAAATCCTTCCAT 58.640 47.619 0.00 0.00 0.00 3.41
667 716 2.159282 GCTGTGAAATCCTTCCATGCTG 60.159 50.000 0.00 0.00 0.00 4.41
668 717 2.426024 CTGTGAAATCCTTCCATGCTGG 59.574 50.000 0.00 0.00 39.43 4.85
669 718 2.041485 TGTGAAATCCTTCCATGCTGGA 59.959 45.455 1.25 1.25 46.61 3.86
713 844 5.722021 TGCCTCATTTTTAGTTTTCTCCC 57.278 39.130 0.00 0.00 0.00 4.30
715 846 6.548321 TGCCTCATTTTTAGTTTTCTCCCTA 58.452 36.000 0.00 0.00 0.00 3.53
718 849 7.122799 GCCTCATTTTTAGTTTTCTCCCTACAT 59.877 37.037 0.00 0.00 0.00 2.29
719 850 8.462016 CCTCATTTTTAGTTTTCTCCCTACATG 58.538 37.037 0.00 0.00 0.00 3.21
848 979 3.440415 GGCCAGCCCGTTTAGCAC 61.440 66.667 0.00 0.00 0.00 4.40
901 1032 2.048503 CGTCCCGTTGGTCACCTC 60.049 66.667 0.00 0.00 0.00 3.85
909 1040 1.605753 GTTGGTCACCTCTGGTTTCC 58.394 55.000 0.00 0.00 31.02 3.13
925 1056 3.072468 CCTCTCCCAACGGCCGTA 61.072 66.667 34.44 15.66 0.00 4.02
956 1087 1.583054 GCCCGCCTGAGTATAAACAG 58.417 55.000 0.00 0.00 0.00 3.16
960 1091 3.187700 CCGCCTGAGTATAAACAGTCAC 58.812 50.000 0.00 0.00 0.00 3.67
1029 1160 1.732683 GCCGCACCAAAAACCATCG 60.733 57.895 0.00 0.00 0.00 3.84
1032 1163 0.109781 CGCACCAAAAACCATCGAGG 60.110 55.000 0.00 0.00 45.67 4.63
1035 1166 1.241315 ACCAAAAACCATCGAGGGCG 61.241 55.000 17.64 0.00 43.89 6.13
1038 1169 4.796495 AAACCATCGAGGGCGGGC 62.796 66.667 17.64 0.00 43.89 6.13
1089 1220 2.885644 CGTCGTCATCCAAGCCCG 60.886 66.667 0.00 0.00 0.00 6.13
1352 1491 1.497722 CGCCGTGCCTCTTTCTTTC 59.502 57.895 0.00 0.00 0.00 2.62
1353 1492 1.497722 GCCGTGCCTCTTTCTTTCG 59.502 57.895 0.00 0.00 0.00 3.46
1382 1521 7.129109 TCTTGTTCTTTCGGTTGATTGATAC 57.871 36.000 0.00 0.00 0.00 2.24
1392 1531 1.195985 GATTGATACGTCGTGCGCG 59.804 57.895 14.79 14.79 46.11 6.86
1418 1557 3.381370 GGAGCCCACCGATTTAGAC 57.619 57.895 0.00 0.00 0.00 2.59
1421 1560 2.484889 GAGCCCACCGATTTAGACATC 58.515 52.381 0.00 0.00 0.00 3.06
1422 1561 2.103263 GAGCCCACCGATTTAGACATCT 59.897 50.000 0.00 0.00 0.00 2.90
1427 1566 5.050490 CCCACCGATTTAGACATCTAGTTG 58.950 45.833 0.00 0.00 0.00 3.16
1429 1568 5.749109 CCACCGATTTAGACATCTAGTTGAC 59.251 44.000 7.81 1.67 0.00 3.18
1431 1570 4.976731 CCGATTTAGACATCTAGTTGACCG 59.023 45.833 7.81 1.04 0.00 4.79
1439 1578 3.006967 ACATCTAGTTGACCGCAAGAACT 59.993 43.478 7.81 0.00 43.02 3.01
1440 1579 3.026630 TCTAGTTGACCGCAAGAACTG 57.973 47.619 0.00 0.00 43.02 3.16
1456 1983 5.924475 AGAACTGATTGAACTTGGTTACG 57.076 39.130 0.00 0.00 0.00 3.18
1458 1985 6.231211 AGAACTGATTGAACTTGGTTACGAT 58.769 36.000 0.00 0.00 0.00 3.73
1469 1996 4.213482 ACTTGGTTACGATGCAAGAAAGAC 59.787 41.667 0.00 0.00 0.00 3.01
1488 2015 4.660168 AGACAGTGCCTTGAATCTTGAAT 58.340 39.130 0.00 0.00 0.00 2.57
1489 2016 5.075493 AGACAGTGCCTTGAATCTTGAATT 58.925 37.500 0.00 0.00 0.00 2.17
1491 2018 5.075493 ACAGTGCCTTGAATCTTGAATTCT 58.925 37.500 7.05 0.00 0.00 2.40
1492 2019 5.182760 ACAGTGCCTTGAATCTTGAATTCTC 59.817 40.000 7.05 0.00 0.00 2.87
1508 2071 7.121974 TGAATTCTCTTTTCTGTTGTCGATC 57.878 36.000 7.05 0.00 0.00 3.69
1510 2073 3.575630 TCTCTTTTCTGTTGTCGATCCG 58.424 45.455 0.00 0.00 0.00 4.18
1513 2076 4.232221 TCTTTTCTGTTGTCGATCCGTAC 58.768 43.478 0.00 0.00 0.00 3.67
1538 2101 5.423886 CCCTTTCTTGAATCAGACTAGACC 58.576 45.833 0.00 0.00 0.00 3.85
1556 2120 7.350382 ACTAGACCAGAGTTCAGAGATTGATA 58.650 38.462 0.00 0.00 35.27 2.15
1587 2151 8.950210 TGGAAATCATAAGTTCAGAAGAATCAC 58.050 33.333 0.00 0.00 35.92 3.06
1601 2165 1.743394 GAATCACCCACCACGATTTCC 59.257 52.381 0.00 0.00 29.67 3.13
1610 2174 1.425428 CACGATTTCCCTCTTGCGC 59.575 57.895 0.00 0.00 0.00 6.09
1612 2176 1.809619 CGATTTCCCTCTTGCGCGA 60.810 57.895 12.10 0.00 0.00 5.87
1613 2177 1.154205 CGATTTCCCTCTTGCGCGAT 61.154 55.000 12.10 0.00 0.00 4.58
1614 2178 0.305922 GATTTCCCTCTTGCGCGATG 59.694 55.000 12.10 0.00 0.00 3.84
1615 2179 1.097547 ATTTCCCTCTTGCGCGATGG 61.098 55.000 12.10 6.37 0.00 3.51
1616 2180 4.838152 TCCCTCTTGCGCGATGGC 62.838 66.667 12.10 0.00 0.00 4.40
1617 2181 4.845580 CCCTCTTGCGCGATGGCT 62.846 66.667 12.10 0.00 36.88 4.75
1618 2182 2.106938 CCTCTTGCGCGATGGCTA 59.893 61.111 12.10 0.00 36.88 3.93
1619 2183 1.521457 CCTCTTGCGCGATGGCTAA 60.521 57.895 12.10 0.00 36.88 3.09
1620 2184 1.089481 CCTCTTGCGCGATGGCTAAA 61.089 55.000 12.10 0.00 36.88 1.85
1621 2185 0.940126 CTCTTGCGCGATGGCTAAAT 59.060 50.000 12.10 0.00 36.88 1.40
1623 2187 2.543848 CTCTTGCGCGATGGCTAAATTA 59.456 45.455 12.10 0.00 36.88 1.40
1625 2189 1.657822 TGCGCGATGGCTAAATTACA 58.342 45.000 12.10 0.00 36.88 2.41
1626 2190 1.597195 TGCGCGATGGCTAAATTACAG 59.403 47.619 12.10 0.00 36.88 2.74
1627 2191 1.864711 GCGCGATGGCTAAATTACAGA 59.135 47.619 12.10 0.00 36.88 3.41
1658 2237 3.008485 GGTAGGAATCACCCATGAGGATC 59.992 52.174 7.17 0.00 38.57 3.36
1706 2346 8.945195 ATGATGGCTAAATTTAGGATTCATCA 57.055 30.769 23.37 19.59 41.36 3.07
1711 2351 9.253832 TGGCTAAATTTAGGATTCATCAGAAAA 57.746 29.630 23.37 0.00 37.29 2.29
1743 2386 9.742552 GTCTGAACTAAATATCTCGAAACAAAC 57.257 33.333 0.00 0.00 0.00 2.93
1750 2393 3.837213 ATCTCGAAACAAACAGCATGG 57.163 42.857 0.00 0.00 43.62 3.66
1751 2394 1.879380 TCTCGAAACAAACAGCATGGG 59.121 47.619 0.00 0.00 43.62 4.00
1755 2398 2.094803 CGAAACAAACAGCATGGGCATA 60.095 45.455 0.00 0.00 43.62 3.14
1762 2405 2.579873 ACAGCATGGGCATATGTTCTC 58.420 47.619 4.29 0.00 43.62 2.87
1791 2434 2.227388 GCACAGAAGTTCTTCCATGGTG 59.773 50.000 12.58 8.38 0.00 4.17
1806 2449 3.441572 CCATGGTGTTCTGAAATCCTGAC 59.558 47.826 2.57 0.00 0.00 3.51
1810 2453 6.065976 TGGTGTTCTGAAATCCTGACATAT 57.934 37.500 11.51 0.00 0.00 1.78
1825 2501 5.450965 CCTGACATATCTTTGATTTGCACCC 60.451 44.000 0.00 0.00 0.00 4.61
1839 2515 0.035458 GCACCCTGTTGCTCTGTACT 59.965 55.000 0.00 0.00 39.59 2.73
1860 2536 4.638865 ACTCGTCTAATGGGTAATTTTGGC 59.361 41.667 0.00 0.00 0.00 4.52
1863 2539 4.274950 CGTCTAATGGGTAATTTTGGCGAT 59.725 41.667 0.00 0.00 33.39 4.58
1909 2585 1.693083 CGAAGCGTCGGGAAATGTCC 61.693 60.000 14.59 0.00 43.81 4.02
1959 2635 0.664761 ATTTGGCATCGGATTCAGCG 59.335 50.000 0.00 0.00 0.00 5.18
2003 2679 1.144057 CTGGAGGTATGGCCGACAC 59.856 63.158 9.63 1.53 43.70 3.67
2014 2690 0.234884 GGCCGACACGACTGAAAAAG 59.765 55.000 0.00 0.00 0.00 2.27
2020 2696 1.947456 ACACGACTGAAAAAGAAGCCC 59.053 47.619 0.00 0.00 0.00 5.19
2022 2698 1.226746 CGACTGAAAAAGAAGCCCGT 58.773 50.000 0.00 0.00 0.00 5.28
2028 2704 1.197949 GAAAAAGAAGCCCGTCTGCTC 59.802 52.381 0.00 0.00 41.80 4.26
2050 2726 6.199342 GCTCGTTCCTCTTGTTATCTGATAAC 59.801 42.308 26.19 26.19 44.13 1.89
2065 2741 4.405680 TCTGATAACAATGACCGGAGATGT 59.594 41.667 9.46 4.64 0.00 3.06
2066 2742 4.441792 TGATAACAATGACCGGAGATGTG 58.558 43.478 9.46 1.49 0.00 3.21
2094 2770 9.787435 AACTTGTGTAGACCAACAATAATCTTA 57.213 29.630 0.00 0.00 0.00 2.10
2098 2774 9.562408 TGTGTAGACCAACAATAATCTTACAAA 57.438 29.630 0.00 0.00 0.00 2.83
2143 2819 5.048782 ACAAATCGTACAATGTGCATCTTGT 60.049 36.000 17.53 17.53 38.95 3.16
2248 2930 5.423015 GAGCTAATTGTCAAGGAGATGTCA 58.577 41.667 0.00 0.00 0.00 3.58
2264 2946 1.745115 TCAGCCGCTTCGGATTTGG 60.745 57.895 9.70 0.00 45.97 3.28
2265 2947 3.134127 AGCCGCTTCGGATTTGGC 61.134 61.111 9.70 6.75 45.97 4.52
2317 2999 4.335082 TGAAATGTTCGGCAAATCTACG 57.665 40.909 0.00 0.00 0.00 3.51
2351 3033 3.936564 ACTCCTGATGAAGAGCAGAAAC 58.063 45.455 0.00 0.00 37.87 2.78
2411 3093 1.886542 ACCCTCCGTTCAAAAGCATTC 59.113 47.619 0.00 0.00 0.00 2.67
2448 3180 5.177696 GTCCAAGTTCAGACATTGACAGTAC 59.822 44.000 0.00 0.00 34.94 2.73
2480 3212 6.449698 AGAAAATCACAACATAAGGCACAAG 58.550 36.000 0.00 0.00 0.00 3.16
2482 3214 6.892658 AAATCACAACATAAGGCACAAGTA 57.107 33.333 0.00 0.00 0.00 2.24
2517 3277 9.829507 TCAAATTTGAGCCTAGAAAATCAAAAA 57.170 25.926 16.91 0.00 42.89 1.94
2543 3303 9.753674 AACACATTATATTTCTGGAAAAGAGGA 57.246 29.630 0.00 0.00 35.91 3.71
2544 3304 9.753674 ACACATTATATTTCTGGAAAAGAGGAA 57.246 29.630 0.00 0.00 35.91 3.36
2566 3326 5.567138 AGTAGTTGATACTGCCAAATTGC 57.433 39.130 0.00 0.00 43.35 3.56
2624 3384 1.133945 TGCTCACCTGTGTGGCTTTTA 60.134 47.619 14.77 0.00 42.98 1.52
2625 3385 2.162681 GCTCACCTGTGTGGCTTTTAT 58.837 47.619 0.00 0.00 42.98 1.40
2626 3386 2.095059 GCTCACCTGTGTGGCTTTTATG 60.095 50.000 0.00 0.00 42.98 1.90
2627 3387 1.885887 TCACCTGTGTGGCTTTTATGC 59.114 47.619 0.00 0.00 42.98 3.14
2628 3388 1.888512 CACCTGTGTGGCTTTTATGCT 59.111 47.619 0.00 0.00 38.90 3.79
2629 3389 1.888512 ACCTGTGTGGCTTTTATGCTG 59.111 47.619 0.00 0.00 40.22 4.41
2726 3486 2.105128 GAGCCGTCGTCATCCAGG 59.895 66.667 0.00 0.00 0.00 4.45
2779 3539 1.671379 GGAGCGGTCCCAGTTCAAC 60.671 63.158 23.28 0.00 36.76 3.18
2837 3597 2.981859 ACAGGTCTGTGAAACTCGTT 57.018 45.000 2.46 0.00 43.11 3.85
2880 3640 3.274288 GCGTTTCATCTCCTTTCTCCAT 58.726 45.455 0.00 0.00 0.00 3.41
2927 3688 0.680618 TTGCCTTTGGTTGCAGGATG 59.319 50.000 0.00 0.00 38.95 3.51
2937 3698 2.098117 GGTTGCAGGATGTGAACTATGC 59.902 50.000 0.00 0.00 39.31 3.14
2944 3705 2.544685 GATGTGAACTATGCGCTGTCT 58.455 47.619 9.73 0.00 0.00 3.41
2945 3706 3.490933 GGATGTGAACTATGCGCTGTCTA 60.491 47.826 9.73 0.00 0.00 2.59
2946 3707 2.876091 TGTGAACTATGCGCTGTCTAC 58.124 47.619 9.73 8.32 0.00 2.59
2951 3712 2.594131 ACTATGCGCTGTCTACCCATA 58.406 47.619 9.73 0.00 0.00 2.74
2970 3731 0.749454 ATCAGGCAGGCGAATCAACC 60.749 55.000 0.00 0.00 0.00 3.77
2983 3744 1.865865 ATCAACCGCGTGTCATATCC 58.134 50.000 4.92 0.00 0.00 2.59
3035 3796 3.730761 CCGCTGTGCCACTGAAGC 61.731 66.667 5.85 0.59 0.00 3.86
3037 3798 2.952245 GCTGTGCCACTGAAGCTG 59.048 61.111 5.85 0.00 32.82 4.24
3038 3799 2.952245 CTGTGCCACTGAAGCTGC 59.048 61.111 0.00 0.00 0.00 5.25
3064 3831 0.179124 GACGCGAGATCCTGAAGCTT 60.179 55.000 15.93 0.00 0.00 3.74
3116 3883 8.958119 ACAAGAAAACATCTCTGTGTAGTTTA 57.042 30.769 0.00 0.00 37.42 2.01
3117 3884 9.561069 ACAAGAAAACATCTCTGTGTAGTTTAT 57.439 29.630 0.00 0.00 37.42 1.40
3151 3918 0.941542 ATGTGTACACGTTTTGCGCT 59.058 45.000 20.61 0.00 46.11 5.92
3152 3919 0.026933 TGTGTACACGTTTTGCGCTG 59.973 50.000 20.61 0.00 46.11 5.18
3153 3920 1.010574 TGTACACGTTTTGCGCTGC 60.011 52.632 9.73 0.00 46.11 5.25
3154 3921 1.010574 GTACACGTTTTGCGCTGCA 60.011 52.632 9.73 0.00 46.11 4.41
3155 3922 1.010574 TACACGTTTTGCGCTGCAC 60.011 52.632 9.73 0.66 46.11 4.57
3221 3988 2.723322 ATGATGGTGATCACTGGGTG 57.277 50.000 24.50 0.00 41.52 4.61
3242 4017 2.884639 GTTATGTCTGGCAACACCACTT 59.115 45.455 4.95 0.00 46.36 3.16
3257 4032 5.503927 ACACCACTTTAGATGAGATGCAAT 58.496 37.500 0.00 0.00 0.00 3.56
3279 4054 9.717892 GCAATAAGTGATTAGCTTTTACTAACC 57.282 33.333 0.00 0.00 35.05 2.85
3287 4062 9.609346 TGATTAGCTTTTACTAACCAATACTCC 57.391 33.333 0.00 0.00 35.05 3.85
3288 4063 9.609346 GATTAGCTTTTACTAACCAATACTCCA 57.391 33.333 0.00 0.00 35.05 3.86
3290 4065 9.609346 TTAGCTTTTACTAACCAATACTCCATC 57.391 33.333 0.00 0.00 0.00 3.51
3291 4066 7.054751 AGCTTTTACTAACCAATACTCCATCC 58.945 38.462 0.00 0.00 0.00 3.51
3292 4067 6.018180 GCTTTTACTAACCAATACTCCATCCG 60.018 42.308 0.00 0.00 0.00 4.18
3293 4068 6.549433 TTTACTAACCAATACTCCATCCGT 57.451 37.500 0.00 0.00 0.00 4.69
3294 4069 4.667519 ACTAACCAATACTCCATCCGTC 57.332 45.455 0.00 0.00 0.00 4.79
3295 4070 3.387050 ACTAACCAATACTCCATCCGTCC 59.613 47.826 0.00 0.00 0.00 4.79
3296 4071 1.129058 ACCAATACTCCATCCGTCCC 58.871 55.000 0.00 0.00 0.00 4.46
3297 4072 1.128200 CCAATACTCCATCCGTCCCA 58.872 55.000 0.00 0.00 0.00 4.37
3298 4073 1.488812 CCAATACTCCATCCGTCCCAA 59.511 52.381 0.00 0.00 0.00 4.12
3299 4074 2.092646 CCAATACTCCATCCGTCCCAAA 60.093 50.000 0.00 0.00 0.00 3.28
3300 4075 3.616219 CAATACTCCATCCGTCCCAAAA 58.384 45.455 0.00 0.00 0.00 2.44
3301 4076 4.207165 CAATACTCCATCCGTCCCAAAAT 58.793 43.478 0.00 0.00 0.00 1.82
3302 4077 5.373222 CAATACTCCATCCGTCCCAAAATA 58.627 41.667 0.00 0.00 0.00 1.40
3303 4078 5.843019 ATACTCCATCCGTCCCAAAATAT 57.157 39.130 0.00 0.00 0.00 1.28
3304 4079 6.945636 ATACTCCATCCGTCCCAAAATATA 57.054 37.500 0.00 0.00 0.00 0.86
3305 4080 5.640158 ACTCCATCCGTCCCAAAATATAA 57.360 39.130 0.00 0.00 0.00 0.98
3306 4081 5.621193 ACTCCATCCGTCCCAAAATATAAG 58.379 41.667 0.00 0.00 0.00 1.73
3307 4082 5.368523 ACTCCATCCGTCCCAAAATATAAGA 59.631 40.000 0.00 0.00 0.00 2.10
3308 4083 5.865085 TCCATCCGTCCCAAAATATAAGAG 58.135 41.667 0.00 0.00 0.00 2.85
3309 4084 4.455877 CCATCCGTCCCAAAATATAAGAGC 59.544 45.833 0.00 0.00 0.00 4.09
3310 4085 3.724374 TCCGTCCCAAAATATAAGAGCG 58.276 45.455 0.00 0.00 0.00 5.03
3311 4086 3.133362 TCCGTCCCAAAATATAAGAGCGT 59.867 43.478 0.00 0.00 0.00 5.07
3312 4087 3.875134 CCGTCCCAAAATATAAGAGCGTT 59.125 43.478 0.00 0.00 0.00 4.84
3313 4088 4.334481 CCGTCCCAAAATATAAGAGCGTTT 59.666 41.667 0.00 0.00 0.00 3.60
3314 4089 5.163693 CCGTCCCAAAATATAAGAGCGTTTT 60.164 40.000 0.00 0.00 0.00 2.43
3315 4090 6.319399 CGTCCCAAAATATAAGAGCGTTTTT 58.681 36.000 0.00 0.00 0.00 1.94
3339 4114 2.124903 ACTAGTGCAGTGTCGAAAACG 58.875 47.619 3.69 0.00 35.62 3.60
3340 4115 1.455786 CTAGTGCAGTGTCGAAAACGG 59.544 52.381 3.69 0.00 0.00 4.44
3341 4116 0.461339 AGTGCAGTGTCGAAAACGGT 60.461 50.000 0.00 0.00 0.00 4.83
3342 4117 0.315869 GTGCAGTGTCGAAAACGGTG 60.316 55.000 0.00 0.00 0.00 4.94
3343 4118 0.741574 TGCAGTGTCGAAAACGGTGT 60.742 50.000 0.00 0.00 0.00 4.16
3344 4119 0.375803 GCAGTGTCGAAAACGGTGTT 59.624 50.000 0.00 0.00 0.00 3.32
3345 4120 1.593933 GCAGTGTCGAAAACGGTGTTA 59.406 47.619 0.00 0.00 0.00 2.41
3346 4121 2.222445 GCAGTGTCGAAAACGGTGTTAT 59.778 45.455 0.00 0.00 0.00 1.89
3347 4122 3.429543 GCAGTGTCGAAAACGGTGTTATA 59.570 43.478 0.00 0.00 0.00 0.98
3348 4123 4.092383 GCAGTGTCGAAAACGGTGTTATAT 59.908 41.667 0.00 0.00 0.00 0.86
3349 4124 5.390145 GCAGTGTCGAAAACGGTGTTATATT 60.390 40.000 0.00 0.00 0.00 1.28
3350 4125 6.183360 GCAGTGTCGAAAACGGTGTTATATTA 60.183 38.462 0.00 0.00 0.00 0.98
3351 4126 7.464977 GCAGTGTCGAAAACGGTGTTATATTAT 60.465 37.037 0.00 0.00 0.00 1.28
3352 4127 7.844169 CAGTGTCGAAAACGGTGTTATATTATG 59.156 37.037 0.00 0.00 0.00 1.90
3353 4128 7.010738 AGTGTCGAAAACGGTGTTATATTATGG 59.989 37.037 0.00 0.00 0.00 2.74
3354 4129 6.258287 TGTCGAAAACGGTGTTATATTATGGG 59.742 38.462 0.00 0.00 0.00 4.00
3355 4130 6.479660 GTCGAAAACGGTGTTATATTATGGGA 59.520 38.462 0.00 0.00 0.00 4.37
3356 4131 6.479660 TCGAAAACGGTGTTATATTATGGGAC 59.520 38.462 0.00 0.00 0.00 4.46
3357 4132 6.562640 CGAAAACGGTGTTATATTATGGGACG 60.563 42.308 0.00 0.00 0.00 4.79
3358 4133 4.261578 ACGGTGTTATATTATGGGACGG 57.738 45.455 0.00 0.00 0.00 4.79
3359 4134 3.896888 ACGGTGTTATATTATGGGACGGA 59.103 43.478 0.00 0.00 0.00 4.69
3360 4135 4.021719 ACGGTGTTATATTATGGGACGGAG 60.022 45.833 0.00 0.00 0.00 4.63
3361 4136 4.619863 CGGTGTTATATTATGGGACGGAGG 60.620 50.000 0.00 0.00 0.00 4.30
3362 4137 4.323257 GGTGTTATATTATGGGACGGAGGG 60.323 50.000 0.00 0.00 0.00 4.30
3363 4138 4.529377 GTGTTATATTATGGGACGGAGGGA 59.471 45.833 0.00 0.00 0.00 4.20
3364 4139 4.775780 TGTTATATTATGGGACGGAGGGAG 59.224 45.833 0.00 0.00 0.00 4.30
3451 4247 1.632589 AACCAGTCCATTTTGGGAGC 58.367 50.000 0.00 0.00 38.32 4.70
3492 4288 2.564062 ACCTCAAATGGGAGCAACAATG 59.436 45.455 0.00 0.00 33.47 2.82
3493 4289 2.564062 CCTCAAATGGGAGCAACAATGT 59.436 45.455 0.00 0.00 33.47 2.71
3494 4290 3.763360 CCTCAAATGGGAGCAACAATGTA 59.237 43.478 0.00 0.00 33.47 2.29
3614 4413 5.445964 GCTAGCTCCTAGATATAAGCTCCT 58.554 45.833 7.70 0.00 43.72 3.69
3615 4414 6.409925 GGCTAGCTCCTAGATATAAGCTCCTA 60.410 46.154 15.72 0.00 43.72 2.94
3627 4426 5.838531 ATAAGCTCCTACATATACGCTCC 57.161 43.478 0.00 0.00 0.00 4.70
3628 4427 3.156288 AGCTCCTACATATACGCTCCA 57.844 47.619 0.00 0.00 0.00 3.86
3630 4429 4.856509 AGCTCCTACATATACGCTCCATA 58.143 43.478 0.00 0.00 0.00 2.74
3631 4430 4.884744 AGCTCCTACATATACGCTCCATAG 59.115 45.833 0.00 0.00 0.00 2.23
3632 4431 4.036971 GCTCCTACATATACGCTCCATAGG 59.963 50.000 0.00 0.00 0.00 2.57
3635 4434 5.651139 TCCTACATATACGCTCCATAGGAAC 59.349 44.000 0.00 0.00 35.03 3.62
3637 4436 4.157246 ACATATACGCTCCATAGGAACCA 58.843 43.478 0.00 0.00 0.00 3.67
3638 4437 4.021368 ACATATACGCTCCATAGGAACCAC 60.021 45.833 0.00 0.00 0.00 4.16
3639 4438 0.742505 TACGCTCCATAGGAACCACG 59.257 55.000 0.00 0.00 0.00 4.94
3640 4439 0.968901 ACGCTCCATAGGAACCACGA 60.969 55.000 0.00 0.00 0.00 4.35
3641 4440 0.249073 CGCTCCATAGGAACCACGAG 60.249 60.000 0.00 0.00 0.00 4.18
3719 4521 3.119316 CCATCGTACTGCTCACTCTTCTT 60.119 47.826 0.00 0.00 0.00 2.52
3725 4527 2.625790 ACTGCTCACTCTTCTTCTCGTT 59.374 45.455 0.00 0.00 0.00 3.85
3735 4537 2.440539 TCTTCTCGTTGTCAAGCTCC 57.559 50.000 0.00 0.00 0.00 4.70
3953 4772 2.651361 CTCAAGACCCACGACGCT 59.349 61.111 0.00 0.00 0.00 5.07
3987 4806 1.589630 CCGAGGACGAACACCATCA 59.410 57.895 0.00 0.00 42.66 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.705302 CATGTATCAGCCCACTATTAGACAT 58.295 40.000 0.00 0.00 0.00 3.06
2 3 4.932200 GCATGTATCAGCCCACTATTAGAC 59.068 45.833 0.00 0.00 0.00 2.59
4 5 4.692625 GTGCATGTATCAGCCCACTATTAG 59.307 45.833 0.00 0.00 0.00 1.73
7 8 2.548707 CGTGCATGTATCAGCCCACTAT 60.549 50.000 0.00 0.00 0.00 2.12
8 9 1.202521 CGTGCATGTATCAGCCCACTA 60.203 52.381 0.00 0.00 0.00 2.74
9 10 0.462581 CGTGCATGTATCAGCCCACT 60.463 55.000 0.00 0.00 0.00 4.00
12 13 0.461870 TGTCGTGCATGTATCAGCCC 60.462 55.000 5.68 0.00 0.00 5.19
13 14 0.652592 GTGTCGTGCATGTATCAGCC 59.347 55.000 5.68 0.00 0.00 4.85
14 15 1.358877 TGTGTCGTGCATGTATCAGC 58.641 50.000 5.68 0.00 0.00 4.26
15 16 2.217167 CGATGTGTCGTGCATGTATCAG 59.783 50.000 5.68 1.03 42.78 2.90
16 17 2.192624 CGATGTGTCGTGCATGTATCA 58.807 47.619 5.68 4.22 42.78 2.15
17 18 2.910987 CGATGTGTCGTGCATGTATC 57.089 50.000 5.68 5.67 42.78 2.24
48 49 9.952030 AAAGAACAAGGAAATTTACAAAAAGGA 57.048 25.926 2.58 0.00 0.00 3.36
116 117 0.614697 TCCTTCCCAGCGACTGATCA 60.615 55.000 8.20 0.00 32.44 2.92
122 123 3.787001 CCCCTCCTTCCCAGCGAC 61.787 72.222 0.00 0.00 0.00 5.19
158 159 4.537433 GAGCAGCACCCCCTAGCG 62.537 72.222 0.00 0.00 35.48 4.26
159 160 4.182433 GGAGCAGCACCCCCTAGC 62.182 72.222 0.00 0.00 0.00 3.42
160 161 2.688666 TGGAGCAGCACCCCCTAG 60.689 66.667 6.39 0.00 0.00 3.02
161 162 2.688666 CTGGAGCAGCACCCCCTA 60.689 66.667 6.39 0.00 0.00 3.53
170 171 2.383527 GGTTCGTTCGCTGGAGCAG 61.384 63.158 0.00 0.00 42.21 4.24
171 172 2.357034 GGTTCGTTCGCTGGAGCA 60.357 61.111 0.00 0.00 42.21 4.26
262 295 8.973835 AAAGCAATATTTTTCATGGCATTTTG 57.026 26.923 0.00 0.00 0.00 2.44
278 311 7.125659 AGTGGGGCAAATAAAGTAAAGCAATAT 59.874 33.333 0.00 0.00 0.00 1.28
279 312 6.439058 AGTGGGGCAAATAAAGTAAAGCAATA 59.561 34.615 0.00 0.00 0.00 1.90
280 313 5.248248 AGTGGGGCAAATAAAGTAAAGCAAT 59.752 36.000 0.00 0.00 0.00 3.56
282 315 4.021544 CAGTGGGGCAAATAAAGTAAAGCA 60.022 41.667 0.00 0.00 0.00 3.91
283 316 4.021456 ACAGTGGGGCAAATAAAGTAAAGC 60.021 41.667 0.00 0.00 0.00 3.51
284 317 5.242838 TCACAGTGGGGCAAATAAAGTAAAG 59.757 40.000 0.00 0.00 0.00 1.85
285 318 5.141182 TCACAGTGGGGCAAATAAAGTAAA 58.859 37.500 0.00 0.00 0.00 2.01
286 319 4.730966 TCACAGTGGGGCAAATAAAGTAA 58.269 39.130 0.00 0.00 0.00 2.24
287 320 4.042311 TCTCACAGTGGGGCAAATAAAGTA 59.958 41.667 0.00 0.00 0.00 2.24
288 321 3.157087 CTCACAGTGGGGCAAATAAAGT 58.843 45.455 0.00 0.00 0.00 2.66
289 322 3.420893 TCTCACAGTGGGGCAAATAAAG 58.579 45.455 0.00 0.00 0.00 1.85
290 323 3.517296 TCTCACAGTGGGGCAAATAAA 57.483 42.857 0.00 0.00 0.00 1.40
291 324 3.517296 TTCTCACAGTGGGGCAAATAA 57.483 42.857 0.00 0.00 0.00 1.40
292 325 3.153919 GTTTCTCACAGTGGGGCAAATA 58.846 45.455 0.00 0.00 0.00 1.40
293 326 1.963515 GTTTCTCACAGTGGGGCAAAT 59.036 47.619 0.00 0.00 0.00 2.32
294 327 1.398692 GTTTCTCACAGTGGGGCAAA 58.601 50.000 0.00 0.00 0.00 3.68
295 328 0.467290 GGTTTCTCACAGTGGGGCAA 60.467 55.000 0.00 0.00 0.00 4.52
296 329 1.150536 GGTTTCTCACAGTGGGGCA 59.849 57.895 0.00 0.00 0.00 5.36
297 330 1.603739 GGGTTTCTCACAGTGGGGC 60.604 63.158 0.00 0.00 0.00 5.80
298 331 1.074951 GGGGTTTCTCACAGTGGGG 59.925 63.158 0.00 0.00 0.00 4.96
299 332 0.405585 ATGGGGTTTCTCACAGTGGG 59.594 55.000 0.00 0.00 0.00 4.61
300 333 3.433306 TTATGGGGTTTCTCACAGTGG 57.567 47.619 0.00 0.00 0.00 4.00
301 334 5.782893 TTTTTATGGGGTTTCTCACAGTG 57.217 39.130 0.00 0.00 0.00 3.66
302 335 6.015434 GTGATTTTTATGGGGTTTCTCACAGT 60.015 38.462 0.00 0.00 32.73 3.55
303 336 6.015519 TGTGATTTTTATGGGGTTTCTCACAG 60.016 38.462 0.00 0.00 36.50 3.66
304 337 5.835819 TGTGATTTTTATGGGGTTTCTCACA 59.164 36.000 0.00 0.00 38.41 3.58
305 338 6.339587 TGTGATTTTTATGGGGTTTCTCAC 57.660 37.500 0.00 0.00 0.00 3.51
306 339 8.657387 TTATGTGATTTTTATGGGGTTTCTCA 57.343 30.769 0.00 0.00 0.00 3.27
319 352 9.651913 AGACGGCATTTTTATTATGTGATTTTT 57.348 25.926 0.00 0.00 0.00 1.94
320 353 9.301153 GAGACGGCATTTTTATTATGTGATTTT 57.699 29.630 0.00 0.00 0.00 1.82
321 354 8.686334 AGAGACGGCATTTTTATTATGTGATTT 58.314 29.630 0.00 0.00 0.00 2.17
322 355 8.225603 AGAGACGGCATTTTTATTATGTGATT 57.774 30.769 0.00 0.00 0.00 2.57
323 356 7.807977 AGAGACGGCATTTTTATTATGTGAT 57.192 32.000 0.00 0.00 0.00 3.06
324 357 7.624360 AAGAGACGGCATTTTTATTATGTGA 57.376 32.000 0.00 0.00 0.00 3.58
325 358 9.950680 ATTAAGAGACGGCATTTTTATTATGTG 57.049 29.630 0.00 0.00 0.00 3.21
379 412 8.476064 TGGCATTTTTATATTAAGAGATGGCA 57.524 30.769 14.13 14.13 43.52 4.92
400 433 9.323985 GGCATTTTTCTTTATTACAATATGGCA 57.676 29.630 0.00 0.00 0.00 4.92
483 517 6.607970 AGAGATGGCATTCTTTATTGATGGA 58.392 36.000 0.00 0.00 0.00 3.41
583 617 4.699925 TTGTAACTGGCTTCCTGTAAGT 57.300 40.909 0.00 0.00 37.53 2.24
591 625 5.634859 CCACATCAAATTTGTAACTGGCTTC 59.365 40.000 17.47 0.00 0.00 3.86
621 655 1.225373 CCCTCCCCATCAGGATTTCA 58.775 55.000 0.00 0.00 38.24 2.69
622 656 0.480252 CCCCTCCCCATCAGGATTTC 59.520 60.000 0.00 0.00 38.24 2.17
623 657 1.001140 CCCCCTCCCCATCAGGATTT 61.001 60.000 0.00 0.00 38.24 2.17
624 658 1.387926 CCCCCTCCCCATCAGGATT 60.388 63.158 0.00 0.00 38.24 3.01
625 659 2.295365 CCCCCTCCCCATCAGGAT 59.705 66.667 0.00 0.00 38.24 3.24
668 717 6.753744 GCAAAGAGTTCATGTGGGATAAAATC 59.246 38.462 0.00 0.00 0.00 2.17
669 718 6.351286 GGCAAAGAGTTCATGTGGGATAAAAT 60.351 38.462 0.00 0.00 0.00 1.82
670 719 5.047377 GGCAAAGAGTTCATGTGGGATAAAA 60.047 40.000 0.00 0.00 0.00 1.52
671 720 4.462483 GGCAAAGAGTTCATGTGGGATAAA 59.538 41.667 0.00 0.00 0.00 1.40
685 816 8.011844 AGAAAACTAAAAATGAGGCAAAGAGT 57.988 30.769 0.00 0.00 0.00 3.24
686 817 7.596621 GGAGAAAACTAAAAATGAGGCAAAGAG 59.403 37.037 0.00 0.00 0.00 2.85
687 818 7.433680 GGAGAAAACTAAAAATGAGGCAAAGA 58.566 34.615 0.00 0.00 0.00 2.52
846 977 1.206578 CGTTTGTAAGCAGGCCGTG 59.793 57.895 0.00 0.00 0.00 4.94
847 978 1.964373 CCGTTTGTAAGCAGGCCGT 60.964 57.895 0.00 0.00 0.00 5.68
848 979 2.686816 CCCGTTTGTAAGCAGGCCG 61.687 63.158 0.00 0.00 0.00 6.13
849 980 2.989881 GCCCGTTTGTAAGCAGGCC 61.990 63.158 0.00 0.00 34.23 5.19
850 981 2.566529 GCCCGTTTGTAAGCAGGC 59.433 61.111 0.00 0.00 0.00 4.85
851 982 1.602323 TGGCCCGTTTGTAAGCAGG 60.602 57.895 0.00 0.00 0.00 4.85
852 983 1.579429 GTGGCCCGTTTGTAAGCAG 59.421 57.895 0.00 0.00 0.00 4.24
853 984 1.899534 GGTGGCCCGTTTGTAAGCA 60.900 57.895 0.00 0.00 0.00 3.91
886 1017 2.214216 CCAGAGGTGACCAACGGGA 61.214 63.158 3.63 0.00 38.05 5.14
895 1026 1.645710 GGAGAGGAAACCAGAGGTGA 58.354 55.000 0.00 0.00 35.34 4.02
897 1028 0.193574 TGGGAGAGGAAACCAGAGGT 59.806 55.000 0.00 0.00 37.65 3.85
901 1032 0.321653 CCGTTGGGAGAGGAAACCAG 60.322 60.000 0.00 0.00 35.37 4.00
909 1040 2.183555 GTACGGCCGTTGGGAGAG 59.816 66.667 38.94 0.38 34.06 3.20
1019 1150 1.677633 CCCGCCCTCGATGGTTTTT 60.678 57.895 8.62 0.00 38.10 1.94
1020 1151 2.045340 CCCGCCCTCGATGGTTTT 60.045 61.111 8.62 0.00 38.10 2.43
1038 1169 3.854669 CTCCGCTAGGTGCCCCTG 61.855 72.222 0.00 0.00 42.67 4.45
1041 1172 3.541713 CTCCTCCGCTAGGTGCCC 61.542 72.222 2.25 0.00 46.62 5.36
1276 1407 1.432270 GAAGATTTCCTGGAGCGCCG 61.432 60.000 2.29 0.00 36.79 6.46
1333 1472 1.912371 GAAAGAAAGAGGCACGGCGG 61.912 60.000 13.24 0.66 0.00 6.13
1352 1491 0.451135 CCGAAAGAACAAGAAGCGCG 60.451 55.000 0.00 0.00 0.00 6.86
1353 1492 0.586802 ACCGAAAGAACAAGAAGCGC 59.413 50.000 0.00 0.00 0.00 5.92
1400 1539 0.539986 TGTCTAAATCGGTGGGCTCC 59.460 55.000 0.00 0.00 0.00 4.70
1402 1541 2.119495 AGATGTCTAAATCGGTGGGCT 58.881 47.619 0.00 0.00 0.00 5.19
1403 1542 2.622064 AGATGTCTAAATCGGTGGGC 57.378 50.000 0.00 0.00 0.00 5.36
1404 1543 4.939052 ACTAGATGTCTAAATCGGTGGG 57.061 45.455 0.00 0.00 0.00 4.61
1405 1544 5.749109 GTCAACTAGATGTCTAAATCGGTGG 59.251 44.000 0.00 0.00 0.00 4.61
1406 1545 5.749109 GGTCAACTAGATGTCTAAATCGGTG 59.251 44.000 0.00 0.00 0.00 4.94
1407 1546 5.450137 CGGTCAACTAGATGTCTAAATCGGT 60.450 44.000 0.00 0.00 0.00 4.69
1411 1550 5.339008 TGCGGTCAACTAGATGTCTAAAT 57.661 39.130 0.00 0.00 0.00 1.40
1412 1551 4.794278 TGCGGTCAACTAGATGTCTAAA 57.206 40.909 0.00 0.00 0.00 1.85
1413 1552 4.461431 TCTTGCGGTCAACTAGATGTCTAA 59.539 41.667 0.00 0.00 0.00 2.10
1414 1553 4.014406 TCTTGCGGTCAACTAGATGTCTA 58.986 43.478 0.00 0.00 0.00 2.59
1415 1554 2.826128 TCTTGCGGTCAACTAGATGTCT 59.174 45.455 0.00 0.00 0.00 3.41
1416 1555 3.232213 TCTTGCGGTCAACTAGATGTC 57.768 47.619 0.00 0.00 0.00 3.06
1417 1556 3.006967 AGTTCTTGCGGTCAACTAGATGT 59.993 43.478 0.00 0.00 0.00 3.06
1418 1557 3.369147 CAGTTCTTGCGGTCAACTAGATG 59.631 47.826 0.00 0.00 0.00 2.90
1421 1560 3.026630 TCAGTTCTTGCGGTCAACTAG 57.973 47.619 0.00 0.00 0.00 2.57
1422 1561 3.678056 ATCAGTTCTTGCGGTCAACTA 57.322 42.857 0.00 0.00 0.00 2.24
1427 1566 2.808543 AGTTCAATCAGTTCTTGCGGTC 59.191 45.455 0.00 0.00 0.00 4.79
1429 1568 3.558505 CAAGTTCAATCAGTTCTTGCGG 58.441 45.455 0.00 0.00 31.19 5.69
1431 1570 4.574599 ACCAAGTTCAATCAGTTCTTGC 57.425 40.909 0.00 0.00 35.58 4.01
1439 1578 4.068599 TGCATCGTAACCAAGTTCAATCA 58.931 39.130 0.00 0.00 0.00 2.57
1440 1579 4.678509 TGCATCGTAACCAAGTTCAATC 57.321 40.909 0.00 0.00 0.00 2.67
1456 1983 2.157738 AGGCACTGTCTTTCTTGCATC 58.842 47.619 0.00 0.00 37.18 3.91
1458 1985 1.677576 CAAGGCACTGTCTTTCTTGCA 59.322 47.619 0.00 0.00 40.86 4.08
1469 1996 5.415077 AGAGAATTCAAGATTCAAGGCACTG 59.585 40.000 8.44 0.00 40.86 3.66
1488 2015 3.987868 CGGATCGACAACAGAAAAGAGAA 59.012 43.478 0.00 0.00 0.00 2.87
1489 2016 3.005472 ACGGATCGACAACAGAAAAGAGA 59.995 43.478 0.00 0.00 0.00 3.10
1491 2018 3.380479 ACGGATCGACAACAGAAAAGA 57.620 42.857 0.00 0.00 0.00 2.52
1492 2019 3.367025 GGTACGGATCGACAACAGAAAAG 59.633 47.826 0.00 0.00 0.00 2.27
1508 2071 2.026636 TGATTCAAGAAAGGGGGTACGG 60.027 50.000 0.00 0.00 0.00 4.02
1510 2073 4.019231 AGTCTGATTCAAGAAAGGGGGTAC 60.019 45.833 0.00 0.00 0.00 3.34
1513 2076 3.728385 AGTCTGATTCAAGAAAGGGGG 57.272 47.619 0.00 0.00 0.00 5.40
1538 2101 9.170734 TCCAATTTTATCAATCTCTGAACTCTG 57.829 33.333 0.00 0.00 37.67 3.35
1570 2134 4.349636 TGGTGGGTGATTCTTCTGAACTTA 59.650 41.667 0.00 0.00 34.71 2.24
1587 2151 0.328258 AAGAGGGAAATCGTGGTGGG 59.672 55.000 0.00 0.00 0.00 4.61
1601 2165 1.089481 TTTAGCCATCGCGCAAGAGG 61.089 55.000 8.75 4.31 41.18 3.69
1610 2174 4.212214 GCTTCCTCTGTAATTTAGCCATCG 59.788 45.833 0.00 0.00 0.00 3.84
1612 2176 5.116084 TGCTTCCTCTGTAATTTAGCCAT 57.884 39.130 0.00 0.00 0.00 4.40
1613 2177 4.517285 CTGCTTCCTCTGTAATTTAGCCA 58.483 43.478 0.00 0.00 0.00 4.75
1614 2178 3.879892 CCTGCTTCCTCTGTAATTTAGCC 59.120 47.826 0.00 0.00 0.00 3.93
1615 2179 3.879892 CCCTGCTTCCTCTGTAATTTAGC 59.120 47.826 0.00 0.00 0.00 3.09
1616 2180 5.104259 ACCCTGCTTCCTCTGTAATTTAG 57.896 43.478 0.00 0.00 0.00 1.85
1617 2181 5.130477 CCTACCCTGCTTCCTCTGTAATTTA 59.870 44.000 0.00 0.00 0.00 1.40
1618 2182 4.080299 CCTACCCTGCTTCCTCTGTAATTT 60.080 45.833 0.00 0.00 0.00 1.82
1619 2183 3.456277 CCTACCCTGCTTCCTCTGTAATT 59.544 47.826 0.00 0.00 0.00 1.40
1620 2184 3.041946 CCTACCCTGCTTCCTCTGTAAT 58.958 50.000 0.00 0.00 0.00 1.89
1621 2185 2.043939 TCCTACCCTGCTTCCTCTGTAA 59.956 50.000 0.00 0.00 0.00 2.41
1623 2187 0.413832 TCCTACCCTGCTTCCTCTGT 59.586 55.000 0.00 0.00 0.00 3.41
1625 2189 2.293184 TGATTCCTACCCTGCTTCCTCT 60.293 50.000 0.00 0.00 0.00 3.69
1626 2190 2.119495 TGATTCCTACCCTGCTTCCTC 58.881 52.381 0.00 0.00 0.00 3.71
1627 2191 1.840635 GTGATTCCTACCCTGCTTCCT 59.159 52.381 0.00 0.00 0.00 3.36
1658 2237 5.909621 ATGTGAGGATTCAAAGTGGAATG 57.090 39.130 0.00 0.00 37.61 2.67
1664 2243 5.533903 GCCATCATATGTGAGGATTCAAAGT 59.466 40.000 5.62 0.00 38.38 2.66
1673 2313 7.884877 TCCTAAATTTAGCCATCATATGTGAGG 59.115 37.037 18.18 0.00 37.87 3.86
1711 2351 9.706691 TTCGAGATATTTAGTTCAGACAGTTTT 57.293 29.630 0.00 0.00 0.00 2.43
1735 2378 2.460757 ATGCCCATGCTGTTTGTTTC 57.539 45.000 0.00 0.00 38.71 2.78
1743 2386 2.812591 GAGAGAACATATGCCCATGCTG 59.187 50.000 1.58 0.00 38.71 4.41
1750 2393 2.615912 GCACAAGGAGAGAACATATGCC 59.384 50.000 1.58 0.00 0.00 4.40
1751 2394 3.064545 GTGCACAAGGAGAGAACATATGC 59.935 47.826 13.17 0.00 0.00 3.14
1755 2398 2.369860 TCTGTGCACAAGGAGAGAACAT 59.630 45.455 21.98 0.00 32.55 2.71
1762 2405 2.843701 AGAACTTCTGTGCACAAGGAG 58.156 47.619 21.98 19.48 0.00 3.69
1791 2434 8.498054 TCAAAGATATGTCAGGATTTCAGAAC 57.502 34.615 0.00 0.00 0.00 3.01
1806 2449 5.587388 ACAGGGTGCAAATCAAAGATATG 57.413 39.130 0.00 0.00 0.00 1.78
1810 2453 2.224018 GCAACAGGGTGCAAATCAAAGA 60.224 45.455 4.08 0.00 44.29 2.52
1825 2501 2.999507 AGACGAGTACAGAGCAACAG 57.000 50.000 0.00 0.00 0.00 3.16
1839 2515 3.623960 CGCCAAAATTACCCATTAGACGA 59.376 43.478 0.00 0.00 0.00 4.20
1860 2536 4.065423 TCGCAGAAGCTAACAAAAATCG 57.935 40.909 0.00 0.00 39.10 3.34
1863 2539 2.031157 GCCTCGCAGAAGCTAACAAAAA 60.031 45.455 0.00 0.00 41.48 1.94
1909 2585 1.078918 TTCTGATGGCAGCGTCCAG 60.079 57.895 0.00 0.00 42.01 3.86
1959 2635 3.799755 GCACCGGCATTGGTCGTC 61.800 66.667 0.00 0.00 41.38 4.20
1998 2674 2.348591 GGCTTCTTTTTCAGTCGTGTCG 60.349 50.000 0.00 0.00 0.00 4.35
2003 2679 1.194772 GACGGGCTTCTTTTTCAGTCG 59.805 52.381 0.00 0.00 0.00 4.18
2014 2690 2.048127 AACGAGCAGACGGGCTTC 60.048 61.111 0.00 0.00 45.99 3.86
2020 2696 0.039074 ACAAGAGGAACGAGCAGACG 60.039 55.000 0.00 0.00 39.31 4.18
2022 2698 3.764434 AGATAACAAGAGGAACGAGCAGA 59.236 43.478 0.00 0.00 0.00 4.26
2050 2726 3.861840 AGTTACACATCTCCGGTCATTG 58.138 45.455 0.00 0.00 0.00 2.82
2055 2731 2.367567 ACACAAGTTACACATCTCCGGT 59.632 45.455 0.00 0.00 0.00 5.28
2065 2741 8.911918 ATTATTGTTGGTCTACACAAGTTACA 57.088 30.769 0.00 0.00 0.00 2.41
2066 2742 9.216117 AGATTATTGTTGGTCTACACAAGTTAC 57.784 33.333 0.00 0.00 0.00 2.50
2094 2770 3.523606 TTGAGCAACTGCACATTTTGT 57.476 38.095 4.22 0.00 45.16 2.83
2098 2774 4.114794 GTTCTTTTGAGCAACTGCACATT 58.885 39.130 4.22 0.00 45.16 2.71
2100 2776 2.491298 TGTTCTTTTGAGCAACTGCACA 59.509 40.909 4.22 0.60 45.16 4.57
2101 2777 3.149436 TGTTCTTTTGAGCAACTGCAC 57.851 42.857 4.22 0.00 45.16 4.57
2102 2778 3.865011 TTGTTCTTTTGAGCAACTGCA 57.135 38.095 4.22 0.00 43.12 4.41
2143 2819 6.753744 CGATTCACAATCATTCTAGTGTCAGA 59.246 38.462 0.00 0.00 37.78 3.27
2264 2946 1.958205 CTCGATTCCTGGCATCGGC 60.958 63.158 24.61 0.00 43.14 5.54
2265 2947 1.958205 GCTCGATTCCTGGCATCGG 60.958 63.158 24.61 17.21 43.14 4.18
2269 2951 1.221840 GAAGGCTCGATTCCTGGCA 59.778 57.895 7.09 0.00 33.43 4.92
2317 2999 1.160137 CAGGAGTACTGCAGTTTGCC 58.840 55.000 27.06 21.80 44.23 4.52
2351 3033 2.616960 TGCATTAGTTACCTCACGCAG 58.383 47.619 0.00 0.00 0.00 5.18
2379 3061 4.081862 TGAACGGAGGGTATCAAGTAACTG 60.082 45.833 0.00 0.00 0.00 3.16
2384 3066 4.324267 CTTTTGAACGGAGGGTATCAAGT 58.676 43.478 0.00 0.00 33.71 3.16
2411 3093 7.116948 GTCTGAACTTGGACGATTATGATATGG 59.883 40.741 0.00 0.00 0.00 2.74
2491 3223 9.829507 TTTTTGATTTTCTAGGCTCAAATTTGA 57.170 25.926 19.45 19.45 37.43 2.69
2517 3277 9.753674 TCCTCTTTTCCAGAAATATAATGTGTT 57.246 29.630 0.00 0.00 0.00 3.32
2520 3280 9.981460 ACTTCCTCTTTTCCAGAAATATAATGT 57.019 29.630 0.00 0.00 0.00 2.71
2538 3298 4.353777 TGGCAGTATCAACTACTTCCTCT 58.646 43.478 3.40 0.00 42.41 3.69
2540 3300 5.499004 TTTGGCAGTATCAACTACTTCCT 57.501 39.130 3.40 0.00 42.41 3.36
2542 3302 6.030228 GCAATTTGGCAGTATCAACTACTTC 58.970 40.000 0.00 0.00 38.68 3.01
2543 3303 5.105756 GGCAATTTGGCAGTATCAACTACTT 60.106 40.000 17.26 0.00 43.14 2.24
2544 3304 4.399303 GGCAATTTGGCAGTATCAACTACT 59.601 41.667 17.26 0.00 43.14 2.57
2545 3305 4.672409 GGCAATTTGGCAGTATCAACTAC 58.328 43.478 17.26 0.00 43.14 2.73
2549 3309 1.476085 CCGGCAATTTGGCAGTATCAA 59.524 47.619 21.18 0.00 43.94 2.57
2559 3319 1.133025 CCAGAAGTAGCCGGCAATTTG 59.867 52.381 31.54 17.76 0.00 2.32
2566 3326 0.179073 CACATCCCAGAAGTAGCCGG 60.179 60.000 0.00 0.00 0.00 6.13
2626 3386 0.174162 GGATGGATGGTGCAAACAGC 59.826 55.000 0.00 0.00 44.74 4.40
2627 3387 1.475280 CTGGATGGATGGTGCAAACAG 59.525 52.381 0.00 0.00 0.00 3.16
2628 3388 1.548081 CTGGATGGATGGTGCAAACA 58.452 50.000 0.00 0.00 0.00 2.83
2629 3389 0.819582 CCTGGATGGATGGTGCAAAC 59.180 55.000 0.00 0.00 38.35 2.93
2693 3453 2.124983 TCGCTTCAGGATGCTGGC 60.125 61.111 14.84 9.74 34.76 4.85
2726 3486 0.606604 TAGTCCTTGAGCCGGTTGTC 59.393 55.000 1.90 0.00 0.00 3.18
2779 3539 0.591741 GGTACTTGGCGACGATCTCG 60.592 60.000 0.00 9.37 45.97 4.04
2837 3597 5.636837 GCAGATTAAGGCAATACGTTTTCA 58.363 37.500 0.00 0.00 0.00 2.69
2848 3608 3.609853 AGATGAAACGCAGATTAAGGCA 58.390 40.909 0.00 0.00 0.00 4.75
2880 3640 1.000060 GCTGATGAGCAAGCAAAACCA 60.000 47.619 0.00 0.00 45.46 3.67
2927 3688 2.194271 GGTAGACAGCGCATAGTTCAC 58.806 52.381 11.47 7.05 0.00 3.18
2937 3698 1.337260 GCCTGATATGGGTAGACAGCG 60.337 57.143 0.00 0.00 0.00 5.18
2944 3705 0.471022 TCGCCTGCCTGATATGGGTA 60.471 55.000 0.00 0.00 0.00 3.69
2945 3706 1.344953 TTCGCCTGCCTGATATGGGT 61.345 55.000 0.00 0.00 0.00 4.51
2946 3707 0.037303 ATTCGCCTGCCTGATATGGG 59.963 55.000 0.00 0.00 0.00 4.00
2951 3712 0.749454 GGTTGATTCGCCTGCCTGAT 60.749 55.000 0.00 0.00 0.00 2.90
2970 3731 3.036084 GCCCGGATATGACACGCG 61.036 66.667 0.73 3.53 0.00 6.01
2972 3733 3.036084 GCGCCCGGATATGACACG 61.036 66.667 0.73 0.00 0.00 4.49
3022 3783 2.736579 ATCGCAGCTTCAGTGGCACA 62.737 55.000 21.41 0.00 0.00 4.57
3023 3784 1.580845 AATCGCAGCTTCAGTGGCAC 61.581 55.000 10.29 10.29 0.00 5.01
3024 3785 1.300971 GAATCGCAGCTTCAGTGGCA 61.301 55.000 0.00 0.00 0.00 4.92
3025 3786 1.427020 GAATCGCAGCTTCAGTGGC 59.573 57.895 0.00 0.00 0.00 5.01
3026 3787 1.699656 CCGAATCGCAGCTTCAGTGG 61.700 60.000 0.00 0.00 0.00 4.00
3028 3789 0.737715 GTCCGAATCGCAGCTTCAGT 60.738 55.000 0.00 0.00 0.00 3.41
3038 3799 1.726322 GGATCTCGCGTCCGAATCG 60.726 63.158 5.77 0.00 43.87 3.34
3136 3903 1.010574 TGCAGCGCAAAACGTGTAC 60.011 52.632 11.47 0.00 46.11 2.90
3141 3908 2.127270 ATCGTGCAGCGCAAAACG 60.127 55.556 18.80 18.80 41.47 3.60
3151 3918 4.481930 ACGAATTCAAAAAGATCGTGCA 57.518 36.364 6.22 0.00 44.20 4.57
3154 3921 4.377022 CCGACACGAATTCAAAAAGATCGT 60.377 41.667 6.22 0.00 46.54 3.73
3155 3922 4.081761 CCGACACGAATTCAAAAAGATCG 58.918 43.478 6.22 4.60 39.30 3.69
3242 4017 9.212641 GCTAATCACTTATTGCATCTCATCTAA 57.787 33.333 0.00 0.00 0.00 2.10
3277 4052 1.129058 GGGACGGATGGAGTATTGGT 58.871 55.000 0.00 0.00 0.00 3.67
3278 4053 1.128200 TGGGACGGATGGAGTATTGG 58.872 55.000 0.00 0.00 0.00 3.16
3279 4054 3.275617 TTTGGGACGGATGGAGTATTG 57.724 47.619 0.00 0.00 0.00 1.90
3281 4056 5.843019 ATATTTTGGGACGGATGGAGTAT 57.157 39.130 0.00 0.00 0.00 2.12
3282 4057 6.555738 TCTTATATTTTGGGACGGATGGAGTA 59.444 38.462 0.00 0.00 0.00 2.59
3284 4059 5.865085 TCTTATATTTTGGGACGGATGGAG 58.135 41.667 0.00 0.00 0.00 3.86
3285 4060 5.744887 GCTCTTATATTTTGGGACGGATGGA 60.745 44.000 0.00 0.00 0.00 3.41
3286 4061 4.455877 GCTCTTATATTTTGGGACGGATGG 59.544 45.833 0.00 0.00 0.00 3.51
3287 4062 4.152402 CGCTCTTATATTTTGGGACGGATG 59.848 45.833 0.00 0.00 0.00 3.51
3288 4063 4.202326 ACGCTCTTATATTTTGGGACGGAT 60.202 41.667 0.00 0.00 0.00 4.18
3289 4064 3.133362 ACGCTCTTATATTTTGGGACGGA 59.867 43.478 0.00 0.00 0.00 4.69
3290 4065 3.463944 ACGCTCTTATATTTTGGGACGG 58.536 45.455 0.00 0.00 0.00 4.79
3291 4066 5.479716 AAACGCTCTTATATTTTGGGACG 57.520 39.130 0.00 0.00 0.00 4.79
3332 4107 6.562640 CGTCCCATAATATAACACCGTTTTCG 60.563 42.308 0.00 0.00 43.67 3.46
3333 4108 6.293027 CCGTCCCATAATATAACACCGTTTTC 60.293 42.308 0.00 0.00 0.00 2.29
3334 4109 5.528320 CCGTCCCATAATATAACACCGTTTT 59.472 40.000 0.00 0.00 0.00 2.43
3335 4110 5.058490 CCGTCCCATAATATAACACCGTTT 58.942 41.667 0.00 0.00 0.00 3.60
3336 4111 4.344679 TCCGTCCCATAATATAACACCGTT 59.655 41.667 0.00 0.00 0.00 4.44
3337 4112 3.896888 TCCGTCCCATAATATAACACCGT 59.103 43.478 0.00 0.00 0.00 4.83
3338 4113 4.491676 CTCCGTCCCATAATATAACACCG 58.508 47.826 0.00 0.00 0.00 4.94
3339 4114 4.323257 CCCTCCGTCCCATAATATAACACC 60.323 50.000 0.00 0.00 0.00 4.16
3340 4115 4.529377 TCCCTCCGTCCCATAATATAACAC 59.471 45.833 0.00 0.00 0.00 3.32
3341 4116 4.754311 TCCCTCCGTCCCATAATATAACA 58.246 43.478 0.00 0.00 0.00 2.41
3342 4117 4.776308 ACTCCCTCCGTCCCATAATATAAC 59.224 45.833 0.00 0.00 0.00 1.89
3343 4118 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3344 4119 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3345 4120 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3346 4121 4.106825 TCTTACTCCCTCCGTCCCATAATA 59.893 45.833 0.00 0.00 0.00 0.98
3347 4122 3.116862 TCTTACTCCCTCCGTCCCATAAT 60.117 47.826 0.00 0.00 0.00 1.28
3348 4123 2.245546 TCTTACTCCCTCCGTCCCATAA 59.754 50.000 0.00 0.00 0.00 1.90
3349 4124 1.854939 TCTTACTCCCTCCGTCCCATA 59.145 52.381 0.00 0.00 0.00 2.74
3350 4125 0.635009 TCTTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
3351 4126 0.324091 GTCTTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
3352 4127 1.382692 CGTCTTACTCCCTCCGTCCC 61.383 65.000 0.00 0.00 0.00 4.46
3353 4128 2.002509 GCGTCTTACTCCCTCCGTCC 62.003 65.000 0.00 0.00 0.00 4.79
3354 4129 1.031029 AGCGTCTTACTCCCTCCGTC 61.031 60.000 0.00 0.00 0.00 4.79
3355 4130 1.001145 AGCGTCTTACTCCCTCCGT 60.001 57.895 0.00 0.00 0.00 4.69
3356 4131 1.030488 TCAGCGTCTTACTCCCTCCG 61.030 60.000 0.00 0.00 0.00 4.63
3357 4132 1.404843 ATCAGCGTCTTACTCCCTCC 58.595 55.000 0.00 0.00 0.00 4.30
3358 4133 2.427453 TCAATCAGCGTCTTACTCCCTC 59.573 50.000 0.00 0.00 0.00 4.30
3359 4134 2.457598 TCAATCAGCGTCTTACTCCCT 58.542 47.619 0.00 0.00 0.00 4.20
3360 4135 2.961526 TCAATCAGCGTCTTACTCCC 57.038 50.000 0.00 0.00 0.00 4.30
3361 4136 4.046938 TGATCAATCAGCGTCTTACTCC 57.953 45.455 0.00 0.00 32.11 3.85
3451 4247 2.172851 AGCCATTGTTGCCATTGTTG 57.827 45.000 0.00 0.00 0.00 3.33
3467 4263 0.255890 TGCTCCCATTTGAGGTAGCC 59.744 55.000 0.00 0.00 32.81 3.93
3472 4268 2.564062 ACATTGTTGCTCCCATTTGAGG 59.436 45.455 0.00 0.00 32.81 3.86
3493 4289 9.944376 GCTCCATTCCAAAACAGATATATACTA 57.056 33.333 0.00 0.00 0.00 1.82
3494 4290 8.664079 AGCTCCATTCCAAAACAGATATATACT 58.336 33.333 0.00 0.00 0.00 2.12
3614 4413 5.184479 GTGGTTCCTATGGAGCGTATATGTA 59.816 44.000 0.00 0.00 33.63 2.29
3615 4414 4.021368 GTGGTTCCTATGGAGCGTATATGT 60.021 45.833 0.00 0.00 33.63 2.29
3621 4420 0.968901 TCGTGGTTCCTATGGAGCGT 60.969 55.000 0.00 0.00 33.63 5.07
3627 4426 2.159085 GGGAGTTCTCGTGGTTCCTATG 60.159 54.545 0.00 0.00 0.00 2.23
3628 4427 2.108970 GGGAGTTCTCGTGGTTCCTAT 58.891 52.381 0.00 0.00 0.00 2.57
3630 4429 0.471211 TGGGAGTTCTCGTGGTTCCT 60.471 55.000 0.00 0.00 0.00 3.36
3631 4430 0.395312 TTGGGAGTTCTCGTGGTTCC 59.605 55.000 0.00 0.00 0.00 3.62
3632 4431 1.797025 CTTGGGAGTTCTCGTGGTTC 58.203 55.000 0.00 0.00 0.00 3.62
3635 4434 1.376037 GGCTTGGGAGTTCTCGTGG 60.376 63.158 0.00 0.00 0.00 4.94
3637 4436 0.036010 CATGGCTTGGGAGTTCTCGT 60.036 55.000 0.00 0.00 0.00 4.18
3638 4437 0.745845 CCATGGCTTGGGAGTTCTCG 60.746 60.000 11.46 0.00 42.33 4.04
3639 4438 3.181526 CCATGGCTTGGGAGTTCTC 57.818 57.895 11.46 0.00 42.33 2.87
3673 4472 3.145551 CCAAGAGCAGGCCATGGC 61.146 66.667 29.47 29.47 41.06 4.40
3702 4504 3.189702 ACGAGAAGAAGAGTGAGCAGTAC 59.810 47.826 0.00 0.00 0.00 2.73
3719 4521 1.289066 CCGGAGCTTGACAACGAGA 59.711 57.895 0.00 0.00 0.00 4.04
3725 4527 4.717629 CGTCGCCGGAGCTTGACA 62.718 66.667 5.05 0.00 36.60 3.58
3987 4806 2.351276 GTCCCCATTGAGCGTGGT 59.649 61.111 0.00 0.00 34.87 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.