Multiple sequence alignment - TraesCS7B01G437000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G437000 chr7B 100.000 3303 0 0 1 3303 703245056 703248358 0.000000e+00 6100
1 TraesCS7B01G437000 chr7B 88.423 1002 100 7 1112 2110 703165853 703166841 0.000000e+00 1194
2 TraesCS7B01G437000 chr7B 77.578 446 51 36 230 657 703165093 703165507 1.190000e-54 224
3 TraesCS7B01G437000 chr7D 95.206 3296 119 8 28 3303 613405313 613408589 0.000000e+00 5175
4 TraesCS7B01G437000 chr7D 88.723 1002 97 8 1112 2110 613394582 613395570 0.000000e+00 1210
5 TraesCS7B01G437000 chr7D 77.983 595 81 34 230 811 613393761 613394318 8.840000e-86 327
6 TraesCS7B01G437000 chr7A 94.571 3168 144 8 143 3303 704791381 704794527 0.000000e+00 4872
7 TraesCS7B01G437000 chr7A 88.523 1002 99 8 1112 2110 704776826 704777814 0.000000e+00 1199
8 TraesCS7B01G437000 chr7A 92.208 77 5 1 230 305 704691559 704691635 1.250000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G437000 chr7B 703245056 703248358 3302 False 6100.0 6100 100.0000 1 3303 1 chr7B.!!$F1 3302
1 TraesCS7B01G437000 chr7B 703165093 703166841 1748 False 709.0 1194 83.0005 230 2110 2 chr7B.!!$F2 1880
2 TraesCS7B01G437000 chr7D 613405313 613408589 3276 False 5175.0 5175 95.2060 28 3303 1 chr7D.!!$F1 3275
3 TraesCS7B01G437000 chr7D 613393761 613395570 1809 False 768.5 1210 83.3530 230 2110 2 chr7D.!!$F2 1880
4 TraesCS7B01G437000 chr7A 704791381 704794527 3146 False 4872.0 4872 94.5710 143 3303 1 chr7A.!!$F3 3160
5 TraesCS7B01G437000 chr7A 704776826 704777814 988 False 1199.0 1199 88.5230 1112 2110 1 chr7A.!!$F2 998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.036306 TCCCCGTTCCTGAAAAGCTC 59.964 55.0 0.00 0.0 0.0 4.09 F
93 94 0.248289 TTGTCAAGCTAGCGTACCCC 59.752 55.0 9.55 0.0 0.0 4.95 F
924 974 0.391263 GATCACGTCCCCTGTTCCAC 60.391 60.0 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1304 1392 0.393808 AACAGCAACAACAGACGGGT 60.394 50.0 0.00 0.00 0.0 5.28 R
1812 1900 0.436531 GTTTCTCGCAGTTCTGCTCG 59.563 55.0 20.12 11.93 0.0 5.03 R
2784 2876 0.615544 ATGTTTGGGTGGGCATCTGG 60.616 55.0 0.00 0.00 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.813346 TCCCCGTTCCTGAAAAGC 57.187 55.556 0.00 0.00 0.00 3.51
18 19 2.151369 TCCCCGTTCCTGAAAAGCT 58.849 52.632 0.00 0.00 0.00 3.74
19 20 0.036306 TCCCCGTTCCTGAAAAGCTC 59.964 55.000 0.00 0.00 0.00 4.09
20 21 0.250727 CCCCGTTCCTGAAAAGCTCA 60.251 55.000 0.00 0.00 0.00 4.26
21 22 1.614317 CCCCGTTCCTGAAAAGCTCAT 60.614 52.381 0.00 0.00 32.14 2.90
22 23 1.740025 CCCGTTCCTGAAAAGCTCATC 59.260 52.381 0.00 0.00 32.14 2.92
23 24 2.616510 CCCGTTCCTGAAAAGCTCATCT 60.617 50.000 0.00 0.00 32.14 2.90
24 25 2.675348 CCGTTCCTGAAAAGCTCATCTC 59.325 50.000 0.00 0.00 32.14 2.75
25 26 3.329386 CGTTCCTGAAAAGCTCATCTCA 58.671 45.455 0.00 0.00 32.14 3.27
26 27 3.748048 CGTTCCTGAAAAGCTCATCTCAA 59.252 43.478 0.00 0.00 32.14 3.02
44 45 4.631377 TCTCAACTTCCGCATTTGAGTATG 59.369 41.667 9.70 0.00 44.42 2.39
72 73 4.023021 CGGTCTTAGCCCATCTTCTAGTAC 60.023 50.000 0.00 0.00 0.00 2.73
86 87 6.622549 TCTTCTAGTACTTTGTCAAGCTAGC 58.377 40.000 6.62 6.62 32.57 3.42
88 89 3.662247 AGTACTTTGTCAAGCTAGCGT 57.338 42.857 9.55 2.32 32.57 5.07
93 94 0.248289 TTGTCAAGCTAGCGTACCCC 59.752 55.000 9.55 0.00 0.00 4.95
120 122 8.945057 TGCTTTTTCTTTTTCTTTTTACAGCAT 58.055 25.926 0.00 0.00 0.00 3.79
386 428 3.251004 ACATTCTGAACGTTGCCTCTTTC 59.749 43.478 5.00 0.00 0.00 2.62
388 430 0.875059 CTGAACGTTGCCTCTTTCCC 59.125 55.000 5.00 0.00 0.00 3.97
482 525 2.770802 CTGTCATTCCCCTCATCTCTGT 59.229 50.000 0.00 0.00 0.00 3.41
485 528 3.069443 GTCATTCCCCTCATCTCTGTCTC 59.931 52.174 0.00 0.00 0.00 3.36
487 530 2.450867 TCCCCTCATCTCTGTCTCTG 57.549 55.000 0.00 0.00 0.00 3.35
488 531 1.643286 TCCCCTCATCTCTGTCTCTGT 59.357 52.381 0.00 0.00 0.00 3.41
492 535 3.371917 CCCTCATCTCTGTCTCTGTCTCT 60.372 52.174 0.00 0.00 0.00 3.10
493 536 3.628942 CCTCATCTCTGTCTCTGTCTCTG 59.371 52.174 0.00 0.00 0.00 3.35
630 677 3.198068 TGTTCTCTCTGCTGTGAACAAC 58.802 45.455 18.45 13.81 43.12 3.32
633 680 4.511617 TCTCTCTGCTGTGAACAACTAG 57.488 45.455 0.00 0.00 0.00 2.57
682 729 1.153369 CAGTCGACGCCATCCCATT 60.153 57.895 10.46 0.00 0.00 3.16
692 739 1.545211 CATCCCATTCCATGCCCCT 59.455 57.895 0.00 0.00 0.00 4.79
707 754 1.538849 GCCCCTGTTTTGCAACTTCAG 60.539 52.381 0.00 8.10 33.58 3.02
891 941 5.528870 TCATCGCCCTTTTCTTTTCTTTTC 58.471 37.500 0.00 0.00 0.00 2.29
924 974 0.391263 GATCACGTCCCCTGTTCCAC 60.391 60.000 0.00 0.00 0.00 4.02
940 990 6.992123 CCTGTTCCACTATGCATGATTAGTTA 59.008 38.462 10.16 0.00 0.00 2.24
962 1012 2.187958 TCCTGGTCCTGACTATGTTGG 58.812 52.381 0.00 0.00 0.00 3.77
965 1015 3.600388 CTGGTCCTGACTATGTTGGTTC 58.400 50.000 0.00 0.00 0.00 3.62
1029 1082 2.511600 GTTGCCGATCCTGGACCG 60.512 66.667 2.63 2.63 0.00 4.79
1185 1273 1.504912 CTGGACCAGTGAGGGATGAT 58.495 55.000 13.84 0.00 43.89 2.45
1190 1278 0.465097 CCAGTGAGGGATGATGGTGC 60.465 60.000 0.00 0.00 0.00 5.01
1304 1392 1.275291 GACGGGTGATCTGTTCAGGAA 59.725 52.381 0.00 0.00 34.17 3.36
1416 1504 1.658114 GGAGGTGGAACAAAACGCC 59.342 57.895 0.00 0.00 44.16 5.68
1530 1618 0.602905 GGTGGTTGCTAAGCGACAGT 60.603 55.000 0.00 0.00 44.12 3.55
1587 1675 2.383245 ATATGACCCGCTTCTGGCCG 62.383 60.000 0.00 0.00 37.74 6.13
1605 1693 2.370349 CCGTTAGAGAGGAGAGAAGCA 58.630 52.381 0.00 0.00 0.00 3.91
1613 1701 1.884926 GGAGAGAAGCAATCGCCGG 60.885 63.158 0.00 0.00 39.83 6.13
1672 1760 3.881688 CCACTGCCCTGAGAAATATGAAG 59.118 47.826 0.00 0.00 0.00 3.02
1677 1765 6.005066 TGCCCTGAGAAATATGAAGATGAA 57.995 37.500 0.00 0.00 0.00 2.57
1753 1841 1.428370 CGATGGATGCCGAGCGAAAA 61.428 55.000 0.00 0.00 0.00 2.29
1812 1900 3.932089 GTCTCTTCAAGATCCTTCAGTGC 59.068 47.826 0.00 0.00 36.11 4.40
1905 1993 0.609131 CCATGAAGTGCCCTTTCGGT 60.609 55.000 0.00 0.00 0.00 4.69
1941 2029 2.700897 CCCTGAACATAACCTCGAGGAT 59.299 50.000 37.69 28.35 38.94 3.24
1954 2042 2.752354 CTCGAGGATCACTGTTCAGAGT 59.248 50.000 3.91 0.00 33.17 3.24
2003 2091 4.320788 CCTTCAGGTGATTCACAAGAAAGC 60.321 45.833 18.09 0.00 37.29 3.51
2215 2305 5.069119 TCTGTACTTTCTGCAGTCTGAAGAA 59.931 40.000 18.06 18.06 40.17 2.52
2230 2320 2.215196 GAAGAACGTGGTAAACTGGCA 58.785 47.619 0.00 0.00 0.00 4.92
2257 2347 2.365617 TCGGGATGCAAGATCTCTTACC 59.634 50.000 0.00 0.00 34.28 2.85
2289 2379 6.016777 GTGAAGGATCTTGAAGCAAAGAAGAA 60.017 38.462 0.00 0.00 39.54 2.52
2306 2396 7.839680 AAGAAGAAACCACCAAGTTGATTAT 57.160 32.000 3.87 0.00 0.00 1.28
2334 2424 7.152645 TGAAGGATCTAATATACGCCAGAAAC 58.847 38.462 0.00 0.00 0.00 2.78
2338 2428 4.613944 TCTAATATACGCCAGAAACGTGG 58.386 43.478 0.00 0.00 44.79 4.94
2342 2432 2.386064 TACGCCAGAAACGTGGGCTT 62.386 55.000 15.79 10.72 45.53 4.35
2354 2444 1.267806 CGTGGGCTTGATATTGGCATC 59.732 52.381 0.00 0.00 0.00 3.91
2457 2547 7.945033 TTTTCCTTATGATTTTGCAGACAAC 57.055 32.000 0.00 0.00 34.87 3.32
2499 2589 5.061064 CGTGTTTTTGTTTGAACGGAAATCA 59.939 36.000 0.00 0.00 0.00 2.57
2672 2764 4.547671 TGGTGGTCCTTTGGAAACATAAA 58.452 39.130 0.00 0.00 35.65 1.40
2675 2767 5.478407 GTGGTCCTTTGGAAACATAAATGG 58.522 41.667 0.00 0.00 42.32 3.16
2681 2773 9.150348 GTCCTTTGGAAACATAAATGGTATTTG 57.850 33.333 0.00 0.00 42.32 2.32
2738 2830 3.242349 GCAGAAGCTCGTGATCATTCAAG 60.242 47.826 0.00 0.00 37.91 3.02
2741 2833 2.277969 AGCTCGTGATCATTCAAGCAG 58.722 47.619 17.99 2.76 37.92 4.24
2815 2907 4.519730 CCACCCAAACATTCAAAATGCATT 59.480 37.500 5.99 5.99 0.00 3.56
2862 2954 5.815581 TGGTAGGTTGCTCAGTTTGATATT 58.184 37.500 0.00 0.00 0.00 1.28
2869 2961 3.691118 TGCTCAGTTTGATATTGAGGCAC 59.309 43.478 4.04 0.00 38.94 5.01
2914 3006 2.227388 GTCTCTGGGATGCAGTGTTTTG 59.773 50.000 0.00 0.00 0.00 2.44
2993 3085 4.142026 ACTCGCTGTAATGCTTATGTACCA 60.142 41.667 0.00 0.00 0.00 3.25
3023 3115 4.478206 ACTGCCGGATAGATCATATTGG 57.522 45.455 5.05 0.00 0.00 3.16
3167 3261 5.007682 TGGTTTGTAGCCTAAGGTTTCATC 58.992 41.667 0.00 0.00 0.00 2.92
3176 3270 4.953579 GCCTAAGGTTTCATCCCATAACAA 59.046 41.667 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.036306 GAGCTTTTCAGGAACGGGGA 59.964 55.000 0.00 0.00 0.00 4.81
1 2 0.250727 TGAGCTTTTCAGGAACGGGG 60.251 55.000 0.00 0.00 0.00 5.73
2 3 1.740025 GATGAGCTTTTCAGGAACGGG 59.260 52.381 0.00 0.00 39.68 5.28
3 4 2.675348 GAGATGAGCTTTTCAGGAACGG 59.325 50.000 0.00 0.00 39.68 4.44
4 5 3.329386 TGAGATGAGCTTTTCAGGAACG 58.671 45.455 0.00 0.00 39.68 3.95
5 6 4.759183 AGTTGAGATGAGCTTTTCAGGAAC 59.241 41.667 0.00 0.00 39.68 3.62
6 7 4.978099 AGTTGAGATGAGCTTTTCAGGAA 58.022 39.130 0.00 0.00 39.68 3.36
7 8 4.630644 AGTTGAGATGAGCTTTTCAGGA 57.369 40.909 0.00 0.00 39.68 3.86
8 9 4.155644 GGAAGTTGAGATGAGCTTTTCAGG 59.844 45.833 0.00 0.00 39.68 3.86
9 10 4.142945 CGGAAGTTGAGATGAGCTTTTCAG 60.143 45.833 0.00 0.00 39.68 3.02
10 11 3.748048 CGGAAGTTGAGATGAGCTTTTCA 59.252 43.478 0.00 0.00 40.85 2.69
11 12 3.425492 GCGGAAGTTGAGATGAGCTTTTC 60.425 47.826 0.00 0.00 0.00 2.29
12 13 2.485814 GCGGAAGTTGAGATGAGCTTTT 59.514 45.455 0.00 0.00 0.00 2.27
13 14 2.079925 GCGGAAGTTGAGATGAGCTTT 58.920 47.619 0.00 0.00 0.00 3.51
14 15 1.002430 TGCGGAAGTTGAGATGAGCTT 59.998 47.619 0.00 0.00 0.00 3.74
15 16 0.610174 TGCGGAAGTTGAGATGAGCT 59.390 50.000 0.00 0.00 0.00 4.09
16 17 1.661341 ATGCGGAAGTTGAGATGAGC 58.339 50.000 0.00 0.00 0.00 4.26
17 18 3.686241 TCAAATGCGGAAGTTGAGATGAG 59.314 43.478 0.00 0.00 37.92 2.90
18 19 3.673902 TCAAATGCGGAAGTTGAGATGA 58.326 40.909 0.00 0.00 37.92 2.92
23 24 3.689161 CCATACTCAAATGCGGAAGTTGA 59.311 43.478 0.00 0.00 40.41 3.18
24 25 3.181497 CCCATACTCAAATGCGGAAGTTG 60.181 47.826 0.00 0.00 35.15 3.16
25 26 3.016736 CCCATACTCAAATGCGGAAGTT 58.983 45.455 0.00 0.00 0.00 2.66
26 27 2.643551 CCCATACTCAAATGCGGAAGT 58.356 47.619 0.00 0.00 0.00 3.01
72 73 2.000447 GGGTACGCTAGCTTGACAAAG 59.000 52.381 13.93 0.00 36.41 2.77
86 87 4.037565 AGAAAAAGAAAAAGCAGGGGTACG 59.962 41.667 0.00 0.00 0.00 3.67
88 89 6.553953 AAAGAAAAAGAAAAAGCAGGGGTA 57.446 33.333 0.00 0.00 0.00 3.69
93 94 8.442384 TGCTGTAAAAAGAAAAAGAAAAAGCAG 58.558 29.630 0.00 0.00 31.38 4.24
124 126 9.155975 CAGACAAGTATACTAAAACAAGAGCAT 57.844 33.333 5.65 0.00 0.00 3.79
388 430 8.251383 TCTATTATTAAACTGACTGAGAGGGG 57.749 38.462 0.00 0.00 0.00 4.79
482 525 3.072330 ACTGACAGAGACAGAGACAGAGA 59.928 47.826 10.08 0.00 38.55 3.10
485 528 4.582701 AAACTGACAGAGACAGAGACAG 57.417 45.455 10.08 0.00 38.55 3.51
487 530 4.303282 GGAAAACTGACAGAGACAGAGAC 58.697 47.826 10.08 0.00 38.55 3.36
488 531 3.322254 GGGAAAACTGACAGAGACAGAGA 59.678 47.826 10.08 0.00 38.55 3.10
492 535 2.104792 CTGGGGAAAACTGACAGAGACA 59.895 50.000 10.08 0.00 0.00 3.41
493 536 2.368875 TCTGGGGAAAACTGACAGAGAC 59.631 50.000 10.08 0.00 33.62 3.36
552 599 2.956333 ACAGGTTTCCTTACCAGCAAAC 59.044 45.455 0.00 0.00 40.82 2.93
630 677 7.261325 TGATCTTCGAAGGAAAACAGATCTAG 58.739 38.462 24.37 0.00 34.08 2.43
633 680 6.727824 TTGATCTTCGAAGGAAAACAGATC 57.272 37.500 24.37 16.85 33.79 2.75
682 729 0.762082 TTGCAAAACAGGGGCATGGA 60.762 50.000 0.00 0.00 37.39 3.41
692 739 6.989759 TCAGATAGTACTGAAGTTGCAAAACA 59.010 34.615 5.39 0.80 42.79 2.83
707 754 4.198028 ACAAAACCCGGTCAGATAGTAC 57.802 45.455 0.00 0.00 0.00 2.73
751 801 9.793252 CCAGGAATTGTGAATAAACATCTAAAG 57.207 33.333 0.00 0.00 0.00 1.85
891 941 2.755655 ACGTGATCTCCCTGTTACTCTG 59.244 50.000 0.00 0.00 0.00 3.35
924 974 7.335422 GGACCAGGATTAACTAATCATGCATAG 59.665 40.741 15.39 0.00 46.98 2.23
940 990 3.200825 CCAACATAGTCAGGACCAGGATT 59.799 47.826 0.00 0.00 0.00 3.01
962 1012 6.763135 TCAAACACCTATAGATGCATGAGAAC 59.237 38.462 2.46 0.00 0.00 3.01
965 1015 6.932960 TGATCAAACACCTATAGATGCATGAG 59.067 38.462 2.46 0.00 0.00 2.90
1185 1273 2.031012 CACTGGAGAAGCGCACCA 59.969 61.111 11.47 12.57 35.81 4.17
1190 1278 2.298158 ATACGGGCACTGGAGAAGCG 62.298 60.000 0.00 0.00 40.47 4.68
1304 1392 0.393808 AACAGCAACAACAGACGGGT 60.394 50.000 0.00 0.00 0.00 5.28
1416 1504 3.003068 GGTCATCTGGCATTTGATTCTCG 59.997 47.826 3.25 0.00 0.00 4.04
1530 1618 4.686839 ATCATCGATCTTATCTTCGCGA 57.313 40.909 3.71 3.71 35.39 5.87
1587 1675 4.606961 CGATTGCTTCTCTCCTCTCTAAC 58.393 47.826 0.00 0.00 0.00 2.34
1605 1693 4.798682 AGGAGGACCCCGGCGATT 62.799 66.667 9.30 0.00 36.73 3.34
1613 1701 1.065126 CCACATTCTTGAGGAGGACCC 60.065 57.143 0.00 0.00 35.78 4.46
1672 1760 3.928992 TGATGAGCAAGACGTTCTTCATC 59.071 43.478 16.07 16.07 36.54 2.92
1677 1765 2.820059 TGTGATGAGCAAGACGTTCT 57.180 45.000 0.00 0.00 0.00 3.01
1690 1778 1.466167 GCTACACTGTGCCTTGTGATG 59.534 52.381 7.90 1.74 37.59 3.07
1753 1841 0.608856 TGCATGCACCGGACAGAAAT 60.609 50.000 18.46 0.00 0.00 2.17
1812 1900 0.436531 GTTTCTCGCAGTTCTGCTCG 59.563 55.000 20.12 11.93 0.00 5.03
1905 1993 3.762407 TCAGGGAACGAAGAATCACAA 57.238 42.857 0.00 0.00 0.00 3.33
1941 2029 2.625314 CTGGAGACACTCTGAACAGTGA 59.375 50.000 7.59 0.00 45.92 3.41
1954 2042 2.745698 CAGGTGCTGCTGGAGACA 59.254 61.111 0.00 0.00 39.59 3.41
2215 2305 1.066454 GCTTTTGCCAGTTTACCACGT 59.934 47.619 0.00 0.00 40.15 4.49
2230 2320 2.019984 GATCTTGCATCCCGAGCTTTT 58.980 47.619 0.00 0.00 0.00 2.27
2257 2347 7.092137 TGCTTCAAGATCCTTCACAATATTG 57.908 36.000 14.01 14.01 0.00 1.90
2289 2379 6.209391 CCTTCAAGATAATCAACTTGGTGGTT 59.791 38.462 0.00 0.00 42.27 3.67
2306 2396 6.719829 TCTGGCGTATATTAGATCCTTCAAGA 59.280 38.462 0.00 0.00 0.00 3.02
2334 2424 1.267806 GATGCCAATATCAAGCCCACG 59.732 52.381 0.00 0.00 0.00 4.94
2338 2428 4.697352 ACTAATCGATGCCAATATCAAGCC 59.303 41.667 0.00 0.00 0.00 4.35
2342 2432 5.062528 TGCAACTAATCGATGCCAATATCA 58.937 37.500 0.00 0.00 40.37 2.15
2354 2444 4.213270 TGGAAACAACTCTGCAACTAATCG 59.787 41.667 0.00 0.00 37.44 3.34
2412 2502 9.317936 GGAAAAAGAAAGATGTGACAGAAAAAT 57.682 29.630 0.00 0.00 0.00 1.82
2414 2504 8.066612 AGGAAAAAGAAAGATGTGACAGAAAA 57.933 30.769 0.00 0.00 0.00 2.29
2431 2521 8.490355 GTTGTCTGCAAAATCATAAGGAAAAAG 58.510 33.333 0.00 0.00 36.22 2.27
2432 2522 7.440856 GGTTGTCTGCAAAATCATAAGGAAAAA 59.559 33.333 0.00 0.00 36.22 1.94
2474 2564 2.864968 TCCGTTCAAACAAAAACACGG 58.135 42.857 2.09 2.09 46.89 4.94
2553 2645 8.282592 TCATGAACTTCTTGTTTCATAGAAACG 58.717 33.333 15.39 5.11 39.30 3.60
2602 2694 8.579863 AGCTCTAATCAAGCATAAAACTGTTTT 58.420 29.630 20.87 20.87 42.35 2.43
2611 2703 5.819379 CACTCCAAGCTCTAATCAAGCATAA 59.181 40.000 0.00 0.00 42.35 1.90
2738 2830 1.860484 GCTGGTGCTGGAGTTTCTGC 61.860 60.000 0.00 0.00 36.03 4.26
2741 2833 1.973812 GGGCTGGTGCTGGAGTTTC 60.974 63.158 0.00 0.00 39.59 2.78
2784 2876 0.615544 ATGTTTGGGTGGGCATCTGG 60.616 55.000 0.00 0.00 0.00 3.86
2815 2907 7.039574 CCATAACAGGATTCATATGGCATGAAA 60.040 37.037 10.98 1.84 40.84 2.69
2862 2954 1.271543 CCTTTCATGGACAGTGCCTCA 60.272 52.381 0.00 0.00 0.00 3.86
2869 2961 4.398319 AGTTTACCACCTTTCATGGACAG 58.602 43.478 0.00 0.00 39.87 3.51
2914 3006 3.118592 AGCTACAAATCAGTACAGGAGGC 60.119 47.826 0.00 0.00 0.00 4.70
2993 3085 2.241176 TCTATCCGGCAGTTCCCAAAAT 59.759 45.455 0.00 0.00 0.00 1.82
3070 3163 6.406692 TTCCATTTTATTCCACCGTCAAAA 57.593 33.333 0.00 0.00 0.00 2.44
3167 3261 4.326826 ACACATGTCTGAGTTGTTATGGG 58.673 43.478 0.00 0.00 0.00 4.00
3176 3270 3.884895 TGAACCAAACACATGTCTGAGT 58.115 40.909 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.