Multiple sequence alignment - TraesCS7B01G436900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G436900 chr7B 100.000 4359 0 0 1 4359 703164375 703168733 0.000000e+00 8050.0
1 TraesCS7B01G436900 chr7B 88.423 1002 100 7 1479 2467 703246167 703247165 0.000000e+00 1194.0
2 TraesCS7B01G436900 chr7B 75.561 1158 150 91 67 1133 703244597 703245712 8.600000e-122 448.0
3 TraesCS7B01G436900 chr7B 77.083 672 131 16 3212 3870 369619943 369619282 2.480000e-97 366.0
4 TraesCS7B01G436900 chr7B 90.244 41 4 0 2927 2967 734258990 734259030 2.000000e-03 54.7
5 TraesCS7B01G436900 chr7D 95.593 2882 114 7 1200 4075 613394304 613397178 0.000000e+00 4606.0
6 TraesCS7B01G436900 chr7D 89.133 1003 91 9 1479 2467 613406395 613407393 0.000000e+00 1232.0
7 TraesCS7B01G436900 chr7D 89.628 646 40 12 553 1182 613393594 613394228 0.000000e+00 797.0
8 TraesCS7B01G436900 chr7D 88.755 498 23 12 67 552 613393001 613393477 2.920000e-161 579.0
9 TraesCS7B01G436900 chr7D 78.837 430 56 27 719 1133 613405532 613405941 1.560000e-64 257.0
10 TraesCS7B01G436900 chr7D 88.950 181 11 3 3019 3192 613407390 613407568 9.490000e-52 215.0
11 TraesCS7B01G436900 chr7A 95.455 2882 118 7 1200 4075 704776548 704779422 0.000000e+00 4584.0
12 TraesCS7B01G436900 chr7A 89.022 1002 94 7 1479 2467 704792334 704793332 0.000000e+00 1227.0
13 TraesCS7B01G436900 chr7A 90.462 325 9 9 870 1182 704776159 704776473 4.060000e-110 409.0
14 TraesCS7B01G436900 chr7A 86.035 401 30 8 478 872 704691331 704691711 1.460000e-109 407.0
15 TraesCS7B01G436900 chr7A 95.111 225 9 2 67 290 704691108 704691331 1.930000e-93 353.0
16 TraesCS7B01G436900 chr7A 75.234 642 97 38 67 658 704790737 704791366 9.360000e-62 248.0
17 TraesCS7B01G436900 chr7A 89.571 163 8 3 3037 3192 704793346 704793506 9.560000e-47 198.0
18 TraesCS7B01G436900 chr4B 77.515 676 123 23 3212 3870 14681123 14680460 3.180000e-101 379.0
19 TraesCS7B01G436900 chr1B 77.448 674 124 22 3212 3870 551677190 551676530 1.140000e-100 377.0
20 TraesCS7B01G436900 chr1B 76.994 652 120 22 3235 3870 487098292 487097655 3.230000e-91 346.0
21 TraesCS7B01G436900 chr3B 77.367 676 122 24 3212 3870 799678535 799679196 5.320000e-99 372.0
22 TraesCS7B01G436900 chr4D 78.464 534 95 13 3350 3870 360811669 360812195 9.040000e-87 331.0
23 TraesCS7B01G436900 chr3D 78.277 534 96 13 3350 3870 402238542 402238016 4.200000e-85 326.0
24 TraesCS7B01G436900 chr2B 87.879 66 4 3 9 70 612669345 612669280 1.680000e-09 75.0
25 TraesCS7B01G436900 chr5D 88.136 59 5 1 2464 2520 486161236 486161294 7.820000e-08 69.4
26 TraesCS7B01G436900 chr5A 100.000 37 0 0 32 68 44952530 44952494 7.820000e-08 69.4
27 TraesCS7B01G436900 chr6B 97.222 36 0 1 32 66 688181815 688181780 4.710000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G436900 chr7B 703164375 703168733 4358 False 8050.000000 8050 100.000000 1 4359 1 chr7B.!!$F1 4358
1 TraesCS7B01G436900 chr7B 703244597 703247165 2568 False 821.000000 1194 81.992000 67 2467 2 chr7B.!!$F3 2400
2 TraesCS7B01G436900 chr7B 369619282 369619943 661 True 366.000000 366 77.083000 3212 3870 1 chr7B.!!$R1 658
3 TraesCS7B01G436900 chr7D 613393001 613397178 4177 False 1994.000000 4606 91.325333 67 4075 3 chr7D.!!$F1 4008
4 TraesCS7B01G436900 chr7D 613405532 613407568 2036 False 568.000000 1232 85.640000 719 3192 3 chr7D.!!$F2 2473
5 TraesCS7B01G436900 chr7A 704776159 704779422 3263 False 2496.500000 4584 92.958500 870 4075 2 chr7A.!!$F2 3205
6 TraesCS7B01G436900 chr7A 704790737 704793506 2769 False 557.666667 1227 84.609000 67 3192 3 chr7A.!!$F3 3125
7 TraesCS7B01G436900 chr7A 704691108 704691711 603 False 380.000000 407 90.573000 67 872 2 chr7A.!!$F1 805
8 TraesCS7B01G436900 chr4B 14680460 14681123 663 True 379.000000 379 77.515000 3212 3870 1 chr4B.!!$R1 658
9 TraesCS7B01G436900 chr1B 551676530 551677190 660 True 377.000000 377 77.448000 3212 3870 1 chr1B.!!$R2 658
10 TraesCS7B01G436900 chr1B 487097655 487098292 637 True 346.000000 346 76.994000 3235 3870 1 chr1B.!!$R1 635
11 TraesCS7B01G436900 chr3B 799678535 799679196 661 False 372.000000 372 77.367000 3212 3870 1 chr3B.!!$F1 658
12 TraesCS7B01G436900 chr4D 360811669 360812195 526 False 331.000000 331 78.464000 3350 3870 1 chr4D.!!$F1 520
13 TraesCS7B01G436900 chr3D 402238016 402238542 526 True 326.000000 326 78.277000 3350 3870 1 chr3D.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 361 0.038166 ATTGCCTCCACATGTTCGGT 59.962 50.000 0.00 0.0 0.00 4.69 F
532 581 0.615331 TCAGCTGGGGACACATTCTC 59.385 55.000 15.13 0.0 35.60 2.87 F
1060 1324 1.609072 GGAAACCTGTCTTGCTTGGAC 59.391 52.381 0.00 0.0 0.00 4.02 F
2513 2940 0.039074 CGGACTCACTATCCATCCGC 60.039 60.000 0.00 0.0 45.13 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 2078 0.178998 CATCAGATGGGCCCCTGAAG 60.179 60.0 28.20 22.03 42.02 3.02 R
1670 2085 0.682209 ACAGCAACATCAGATGGGCC 60.682 55.0 20.01 0.00 35.95 5.80 R
2934 3361 0.112025 TGCCATCCAACATGGTGTCA 59.888 50.0 10.47 0.00 41.17 3.58 R
4186 4636 0.036010 ACATGTGGCTCGGAAGGAAG 60.036 55.0 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.361451 AGATGTGATTGTTTGGATTCGC 57.639 40.909 0.00 0.00 0.00 4.70
24 25 3.129287 AGATGTGATTGTTTGGATTCGCC 59.871 43.478 0.00 0.00 37.10 5.54
25 26 1.543802 TGTGATTGTTTGGATTCGCCC 59.456 47.619 0.00 0.00 34.97 6.13
26 27 1.135112 GTGATTGTTTGGATTCGCCCC 60.135 52.381 0.00 0.00 34.97 5.80
27 28 1.272425 TGATTGTTTGGATTCGCCCCT 60.272 47.619 0.00 0.00 34.97 4.79
28 29 1.824852 GATTGTTTGGATTCGCCCCTT 59.175 47.619 0.00 0.00 34.97 3.95
29 30 1.710816 TTGTTTGGATTCGCCCCTTT 58.289 45.000 0.00 0.00 34.97 3.11
30 31 1.710816 TGTTTGGATTCGCCCCTTTT 58.289 45.000 0.00 0.00 34.97 2.27
31 32 2.043227 TGTTTGGATTCGCCCCTTTTT 58.957 42.857 0.00 0.00 34.97 1.94
91 92 8.880878 ATGAAAACAACTATTGTAAAACCACC 57.119 30.769 0.00 0.00 44.59 4.61
124 125 3.096092 AGAAGAGAAGATCTGCGAAGGT 58.904 45.455 0.00 0.00 38.83 3.50
288 305 1.511768 CCCTTTCTCTCCGTCGACC 59.488 63.158 10.58 0.00 0.00 4.79
328 354 2.440796 CCGCCATTGCCTCCACAT 60.441 61.111 0.00 0.00 0.00 3.21
335 361 0.038166 ATTGCCTCCACATGTTCGGT 59.962 50.000 0.00 0.00 0.00 4.69
400 437 2.427245 CCGAGCGTTCTGATCCCCT 61.427 63.158 0.00 0.00 0.00 4.79
420 457 4.445448 CCCTCATTGCTAGCTAGGATGTTT 60.445 45.833 22.10 2.66 0.00 2.83
437 474 6.378280 AGGATGTTTATGGTCAGATTTCAACC 59.622 38.462 0.00 0.00 0.00 3.77
494 543 2.359975 CAAGCCCGTGGTTCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
507 556 2.163509 GTTCCCTCTTCCTGAAAAGCC 58.836 52.381 0.00 0.00 0.00 4.35
508 557 1.747444 TCCCTCTTCCTGAAAAGCCT 58.253 50.000 0.00 0.00 0.00 4.58
516 565 3.623906 TCCTGAAAAGCCTCATCTCAG 57.376 47.619 0.00 0.00 34.55 3.35
532 581 0.615331 TCAGCTGGGGACACATTCTC 59.385 55.000 15.13 0.00 35.60 2.87
740 963 2.829741 TCATGACGATGTGTGTCCAA 57.170 45.000 0.00 0.00 35.46 3.53
758 981 2.832201 GGCTTCAGCAGGGATGGC 60.832 66.667 0.30 0.00 44.36 4.40
759 982 2.832201 GCTTCAGCAGGGATGGCC 60.832 66.667 0.00 0.00 41.59 5.36
760 983 2.515523 CTTCAGCAGGGATGGCCG 60.516 66.667 0.00 0.00 33.83 6.13
761 984 4.113815 TTCAGCAGGGATGGCCGG 62.114 66.667 0.00 0.00 33.83 6.13
861 1099 1.617850 CTGGCTGGCTAGTCATAGGAG 59.382 57.143 4.30 0.00 38.00 3.69
942 1184 2.505819 CCCTGGCCGGCTAATTATAGAT 59.494 50.000 28.56 0.00 0.00 1.98
944 1186 4.163458 CCCTGGCCGGCTAATTATAGATAA 59.837 45.833 28.56 0.00 0.00 1.75
1060 1324 1.609072 GGAAACCTGTCTTGCTTGGAC 59.391 52.381 0.00 0.00 0.00 4.02
1110 1374 7.108194 TCTTCTATCTGCTGTGAACAATTGAT 58.892 34.615 13.59 0.00 0.00 2.57
1136 1400 2.781681 TTCCTTCGAAGATCAACCCC 57.218 50.000 26.61 0.00 35.04 4.95
1154 1435 2.940467 TCCCATCCTTGCCCTGCA 60.940 61.111 0.00 0.00 36.47 4.41
1168 1449 3.244009 TGCCCTGCATTTTCAATTTCGAA 60.244 39.130 0.00 0.00 31.71 3.71
1209 1549 2.138179 CCGGAAATAGGGGCGGAGA 61.138 63.158 0.00 0.00 0.00 3.71
1317 1730 5.504853 TGGTCCATTGTGCATAATGAGTTA 58.495 37.500 30.90 15.32 39.79 2.24
1338 1751 6.549364 AGTTAATCACAAGTTGAAATGGACCA 59.451 34.615 10.54 0.00 37.92 4.02
1359 1772 1.617018 CCTCCAGTTGCCGATCCTGA 61.617 60.000 0.00 0.00 0.00 3.86
1469 1882 8.758633 AGTTATGACTACATCGGTTATAATGC 57.241 34.615 0.00 0.00 37.87 3.56
1475 1888 4.990543 ACATCGGTTATAATGCATGACG 57.009 40.909 0.00 0.00 0.00 4.35
1476 1889 3.745975 ACATCGGTTATAATGCATGACGG 59.254 43.478 0.00 2.27 0.00 4.79
1545 1960 2.355986 CCGATCCTGGACCGGTGAA 61.356 63.158 21.87 0.00 38.55 3.18
1663 2078 2.731341 CGACGGTACAACTGGTGATCTC 60.731 54.545 0.00 0.00 0.00 2.75
1670 2085 2.304180 ACAACTGGTGATCTCTTCAGGG 59.696 50.000 0.00 0.00 34.17 4.45
2482 2909 4.703897 TCTTTTAGGGCATCTCCAATACG 58.296 43.478 0.00 0.00 36.21 3.06
2513 2940 0.039074 CGGACTCACTATCCATCCGC 60.039 60.000 0.00 0.00 45.13 5.54
2520 2947 1.040893 ACTATCCATCCGCGGACACA 61.041 55.000 33.75 17.51 38.07 3.72
2528 2955 3.576356 CGCGGACACATCCATGGC 61.576 66.667 6.96 0.00 46.67 4.40
2539 2966 1.352622 ATCCATGGCCACGGGTACAT 61.353 55.000 19.74 0.00 0.00 2.29
2557 2984 1.095228 ATAAGCGTGCCATCCAACCG 61.095 55.000 0.00 0.00 0.00 4.44
2581 3008 1.574428 CCCAAAACGTCCGCTTCTG 59.426 57.895 0.00 0.00 0.00 3.02
2586 3013 2.521105 AAACGTCCGCTTCTGTTACT 57.479 45.000 0.00 0.00 0.00 2.24
2588 3015 3.648339 AACGTCCGCTTCTGTTACTTA 57.352 42.857 0.00 0.00 0.00 2.24
2589 3016 3.648339 ACGTCCGCTTCTGTTACTTAA 57.352 42.857 0.00 0.00 0.00 1.85
2616 3043 5.425196 AAATGCAACCTTCTGCCAAATAT 57.575 34.783 0.00 0.00 41.90 1.28
2641 3068 8.458573 TCTAAAATCAACCTTCTGCTAAACAA 57.541 30.769 0.00 0.00 0.00 2.83
2648 3075 2.618241 CCTTCTGCTAAACAACACAGCA 59.382 45.455 0.00 0.00 42.77 4.41
2656 3083 1.047596 AACAACACAGCAATGGGCCA 61.048 50.000 9.61 9.61 46.50 5.36
2700 3127 4.155280 TCAACTTTCCGCCAAATAGCTAAC 59.845 41.667 0.00 0.00 0.00 2.34
2706 3133 7.717875 ACTTTCCGCCAAATAGCTAACATTATA 59.282 33.333 0.00 0.00 0.00 0.98
2760 3187 2.355513 CCAGCAATAGCCACAGTCTTCT 60.356 50.000 0.00 0.00 43.56 2.85
2820 3247 7.225341 CGTAGTTATTACCCTTCCACCAAATAC 59.775 40.741 0.00 0.00 0.00 1.89
2861 3288 0.039472 TGGCTTTGATTGGCTAGGCA 59.961 50.000 16.16 16.16 40.35 4.75
2889 3316 4.016706 CTCCCGCAAACCTCCCGT 62.017 66.667 0.00 0.00 0.00 5.28
2890 3317 2.604079 TCCCGCAAACCTCCCGTA 60.604 61.111 0.00 0.00 0.00 4.02
2920 3347 1.885887 CTGGTTTGCGGGATTTCAGAA 59.114 47.619 0.00 0.00 0.00 3.02
2928 3355 1.087501 GGGATTTCAGAAGCGTGGAC 58.912 55.000 0.00 0.00 0.00 4.02
2934 3361 0.885879 TCAGAAGCGTGGACGTATGT 59.114 50.000 0.52 0.00 42.22 2.29
2964 3391 0.894141 TGGATGGCAAAAATGGTCCG 59.106 50.000 0.00 0.00 0.00 4.79
2990 3417 3.122971 GGTACGGTGCTTTCGGGC 61.123 66.667 0.00 0.00 0.00 6.13
3025 3452 3.381590 GGTGTTGGAGATGCCCTTATTTC 59.618 47.826 0.00 0.00 34.97 2.17
3192 3626 3.254166 TGTGAAGGATCTTGAAGCAAAGC 59.746 43.478 0.00 0.00 0.00 3.51
3222 3656 8.533569 TCAATGTTCTGGTGTAGTATCTCATA 57.466 34.615 0.00 0.00 0.00 2.15
3332 3766 3.243101 CGCCGTGTACATAGAGATGAAGT 60.243 47.826 0.00 0.00 36.48 3.01
3528 3965 8.318412 TCACATGTCAAGTATATTTAGTGGTGT 58.682 33.333 0.00 0.00 0.00 4.16
3566 4003 2.893637 TCTGCTATTTCTCCTTGACGC 58.106 47.619 0.00 0.00 0.00 5.19
3576 4013 1.373246 CCTTGACGCGACGGGTTTA 60.373 57.895 19.15 8.75 0.00 2.01
3594 4031 6.423905 CGGGTTTATGTCAGATAGTTATGTGG 59.576 42.308 0.00 0.00 0.00 4.17
3596 4033 7.280356 GGTTTATGTCAGATAGTTATGTGGGT 58.720 38.462 0.00 0.00 0.00 4.51
3666 4103 4.575236 AGACATAAGAGTTCGCGAGACATA 59.425 41.667 9.59 2.96 41.84 2.29
3671 4108 5.690997 AAGAGTTCGCGAGACATATGATA 57.309 39.130 9.59 0.00 41.84 2.15
3672 4109 5.037015 AGAGTTCGCGAGACATATGATAC 57.963 43.478 9.59 0.00 41.84 2.24
3726 4167 4.242475 CAAGTGTTGCTTACCGAGTGATA 58.758 43.478 0.00 0.00 35.27 2.15
3727 4168 3.846360 AGTGTTGCTTACCGAGTGATAC 58.154 45.455 0.00 0.00 0.00 2.24
3792 4233 4.346127 TGACCTCGGATCTTGAATCATCAT 59.654 41.667 0.00 0.00 34.96 2.45
3793 4234 5.163269 TGACCTCGGATCTTGAATCATCATT 60.163 40.000 0.00 0.00 34.96 2.57
3818 4263 8.877864 TTATTGATGGAGGATTGTTTTAGTGT 57.122 30.769 0.00 0.00 0.00 3.55
3877 4327 7.026631 TCTTGGTGAACACATGTAAGAAAAG 57.973 36.000 0.00 0.00 0.00 2.27
3906 4356 3.332187 TGGTACCCATCATTTGAGTTGGA 59.668 43.478 10.07 0.00 0.00 3.53
3918 4368 3.574284 TGAGTTGGATTTCATTTGCGG 57.426 42.857 0.00 0.00 0.00 5.69
3945 4395 4.592485 TGTGTTCAACTTGTTTGGTTGT 57.408 36.364 6.49 0.00 42.97 3.32
3952 4402 4.520874 TCAACTTGTTTGGTTGTGACTGAA 59.479 37.500 6.49 0.00 42.97 3.02
3953 4403 5.184864 TCAACTTGTTTGGTTGTGACTGAAT 59.815 36.000 6.49 0.00 42.97 2.57
4036 4486 1.473080 GCTCTCAGCTGTCATTCTCCC 60.473 57.143 14.67 0.00 38.45 4.30
4045 4495 2.939103 CTGTCATTCTCCCCGATTTCAC 59.061 50.000 0.00 0.00 0.00 3.18
4058 4508 0.608640 ATTTCACTCTCGACGCCCTT 59.391 50.000 0.00 0.00 0.00 3.95
4075 4525 0.615850 CTTGTCTCCTCCTTCCCACC 59.384 60.000 0.00 0.00 0.00 4.61
4076 4526 0.840722 TTGTCTCCTCCTTCCCACCC 60.841 60.000 0.00 0.00 0.00 4.61
4077 4527 1.996187 GTCTCCTCCTTCCCACCCC 60.996 68.421 0.00 0.00 0.00 4.95
4078 4528 2.124996 CTCCTCCTTCCCACCCCA 59.875 66.667 0.00 0.00 0.00 4.96
4079 4529 2.204090 TCCTCCTTCCCACCCCAC 60.204 66.667 0.00 0.00 0.00 4.61
4080 4530 3.339093 CCTCCTTCCCACCCCACC 61.339 72.222 0.00 0.00 0.00 4.61
4081 4531 3.339093 CTCCTTCCCACCCCACCC 61.339 72.222 0.00 0.00 0.00 4.61
4084 4534 3.189646 CTTCCCACCCCACCCCAA 61.190 66.667 0.00 0.00 0.00 4.12
4085 4535 2.704198 TTCCCACCCCACCCCAAA 60.704 61.111 0.00 0.00 0.00 3.28
4086 4536 3.089419 TTCCCACCCCACCCCAAAC 62.089 63.158 0.00 0.00 0.00 2.93
4087 4537 4.631740 CCCACCCCACCCCAAACC 62.632 72.222 0.00 0.00 0.00 3.27
4088 4538 4.631740 CCACCCCACCCCAAACCC 62.632 72.222 0.00 0.00 0.00 4.11
4089 4539 3.517497 CACCCCACCCCAAACCCT 61.517 66.667 0.00 0.00 0.00 4.34
4090 4540 3.190391 ACCCCACCCCAAACCCTC 61.190 66.667 0.00 0.00 0.00 4.30
4091 4541 4.360405 CCCCACCCCAAACCCTCG 62.360 72.222 0.00 0.00 0.00 4.63
4092 4542 3.576259 CCCACCCCAAACCCTCGT 61.576 66.667 0.00 0.00 0.00 4.18
4093 4543 2.033602 CCACCCCAAACCCTCGTC 59.966 66.667 0.00 0.00 0.00 4.20
4094 4544 2.526046 CCACCCCAAACCCTCGTCT 61.526 63.158 0.00 0.00 0.00 4.18
4095 4545 1.003718 CACCCCAAACCCTCGTCTC 60.004 63.158 0.00 0.00 0.00 3.36
4096 4546 2.222013 ACCCCAAACCCTCGTCTCC 61.222 63.158 0.00 0.00 0.00 3.71
4097 4547 1.918800 CCCCAAACCCTCGTCTCCT 60.919 63.158 0.00 0.00 0.00 3.69
4098 4548 0.616679 CCCCAAACCCTCGTCTCCTA 60.617 60.000 0.00 0.00 0.00 2.94
4099 4549 0.535797 CCCAAACCCTCGTCTCCTAC 59.464 60.000 0.00 0.00 0.00 3.18
4100 4550 0.535797 CCAAACCCTCGTCTCCTACC 59.464 60.000 0.00 0.00 0.00 3.18
4101 4551 0.535797 CAAACCCTCGTCTCCTACCC 59.464 60.000 0.00 0.00 0.00 3.69
4102 4552 0.616964 AAACCCTCGTCTCCTACCCC 60.617 60.000 0.00 0.00 0.00 4.95
4103 4553 1.516645 AACCCTCGTCTCCTACCCCT 61.517 60.000 0.00 0.00 0.00 4.79
4104 4554 1.152715 CCCTCGTCTCCTACCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
4105 4555 1.647334 CCCTCGTCTCCTACCCCTCT 61.647 65.000 0.00 0.00 0.00 3.69
4106 4556 0.179012 CCTCGTCTCCTACCCCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
4107 4557 0.841289 CTCGTCTCCTACCCCTCTCT 59.159 60.000 0.00 0.00 0.00 3.10
4108 4558 0.838608 TCGTCTCCTACCCCTCTCTC 59.161 60.000 0.00 0.00 0.00 3.20
4109 4559 0.547075 CGTCTCCTACCCCTCTCTCA 59.453 60.000 0.00 0.00 0.00 3.27
4110 4560 1.064611 CGTCTCCTACCCCTCTCTCAA 60.065 57.143 0.00 0.00 0.00 3.02
4111 4561 2.380941 GTCTCCTACCCCTCTCTCAAC 58.619 57.143 0.00 0.00 0.00 3.18
4112 4562 1.288335 TCTCCTACCCCTCTCTCAACC 59.712 57.143 0.00 0.00 0.00 3.77
4113 4563 1.007238 CTCCTACCCCTCTCTCAACCA 59.993 57.143 0.00 0.00 0.00 3.67
4114 4564 1.196012 CCTACCCCTCTCTCAACCAC 58.804 60.000 0.00 0.00 0.00 4.16
4115 4565 1.196012 CTACCCCTCTCTCAACCACC 58.804 60.000 0.00 0.00 0.00 4.61
4116 4566 0.790993 TACCCCTCTCTCAACCACCT 59.209 55.000 0.00 0.00 0.00 4.00
4117 4567 0.790993 ACCCCTCTCTCAACCACCTA 59.209 55.000 0.00 0.00 0.00 3.08
4118 4568 1.196012 CCCCTCTCTCAACCACCTAC 58.804 60.000 0.00 0.00 0.00 3.18
4119 4569 0.818296 CCCTCTCTCAACCACCTACG 59.182 60.000 0.00 0.00 0.00 3.51
4120 4570 0.173708 CCTCTCTCAACCACCTACGC 59.826 60.000 0.00 0.00 0.00 4.42
4121 4571 0.173708 CTCTCTCAACCACCTACGCC 59.826 60.000 0.00 0.00 0.00 5.68
4122 4572 1.153823 CTCTCAACCACCTACGCCG 60.154 63.158 0.00 0.00 0.00 6.46
4123 4573 2.813908 CTCAACCACCTACGCCGC 60.814 66.667 0.00 0.00 0.00 6.53
4124 4574 4.382320 TCAACCACCTACGCCGCC 62.382 66.667 0.00 0.00 0.00 6.13
4137 4587 3.937062 CCGCCGCCGCAATTACTC 61.937 66.667 0.00 0.00 34.03 2.59
4138 4588 3.937062 CGCCGCCGCAATTACTCC 61.937 66.667 0.00 0.00 34.03 3.85
4139 4589 3.583086 GCCGCCGCAATTACTCCC 61.583 66.667 0.00 0.00 34.03 4.30
4140 4590 3.269347 CCGCCGCAATTACTCCCG 61.269 66.667 0.00 0.00 0.00 5.14
4141 4591 3.937062 CGCCGCAATTACTCCCGC 61.937 66.667 0.00 0.00 0.00 6.13
4142 4592 3.583086 GCCGCAATTACTCCCGCC 61.583 66.667 0.00 0.00 0.00 6.13
4143 4593 2.189521 CCGCAATTACTCCCGCCT 59.810 61.111 0.00 0.00 0.00 5.52
4144 4594 1.451387 CCGCAATTACTCCCGCCTT 60.451 57.895 0.00 0.00 0.00 4.35
4145 4595 1.436983 CCGCAATTACTCCCGCCTTC 61.437 60.000 0.00 0.00 0.00 3.46
4146 4596 1.436983 CGCAATTACTCCCGCCTTCC 61.437 60.000 0.00 0.00 0.00 3.46
4147 4597 1.436983 GCAATTACTCCCGCCTTCCG 61.437 60.000 0.00 0.00 0.00 4.30
4168 4618 3.767230 CGCCTGTGACGCGTCTTG 61.767 66.667 36.27 24.97 44.55 3.02
4169 4619 4.077188 GCCTGTGACGCGTCTTGC 62.077 66.667 36.27 27.43 41.47 4.01
4170 4620 3.414700 CCTGTGACGCGTCTTGCC 61.415 66.667 36.27 22.21 42.08 4.52
4171 4621 2.661537 CTGTGACGCGTCTTGCCA 60.662 61.111 36.27 24.99 42.08 4.92
4172 4622 2.943345 CTGTGACGCGTCTTGCCAC 61.943 63.158 36.27 26.75 42.08 5.01
4173 4623 2.661866 GTGACGCGTCTTGCCACT 60.662 61.111 36.27 0.00 42.08 4.00
4174 4624 2.355837 TGACGCGTCTTGCCACTC 60.356 61.111 36.27 11.22 42.08 3.51
4175 4625 3.470567 GACGCGTCTTGCCACTCG 61.471 66.667 31.12 0.00 42.08 4.18
4176 4626 4.280494 ACGCGTCTTGCCACTCGT 62.280 61.111 5.58 0.00 42.08 4.18
4177 4627 3.767230 CGCGTCTTGCCACTCGTG 61.767 66.667 0.00 0.00 42.08 4.35
4178 4628 2.355837 GCGTCTTGCCACTCGTGA 60.356 61.111 0.00 0.00 37.76 4.35
4179 4629 1.954146 GCGTCTTGCCACTCGTGAA 60.954 57.895 0.00 0.00 37.76 3.18
4180 4630 1.495584 GCGTCTTGCCACTCGTGAAA 61.496 55.000 0.00 0.00 37.76 2.69
4181 4631 0.934496 CGTCTTGCCACTCGTGAAAA 59.066 50.000 0.00 0.00 0.00 2.29
4182 4632 1.070577 CGTCTTGCCACTCGTGAAAAG 60.071 52.381 0.00 2.60 0.00 2.27
4183 4633 2.210116 GTCTTGCCACTCGTGAAAAGA 58.790 47.619 0.00 4.78 32.94 2.52
4184 4634 2.808543 GTCTTGCCACTCGTGAAAAGAT 59.191 45.455 13.63 0.00 35.69 2.40
4185 4635 3.067106 TCTTGCCACTCGTGAAAAGATC 58.933 45.455 0.00 0.00 31.51 2.75
4186 4636 1.808411 TGCCACTCGTGAAAAGATCC 58.192 50.000 0.00 0.00 0.00 3.36
4187 4637 1.347707 TGCCACTCGTGAAAAGATCCT 59.652 47.619 0.00 0.00 0.00 3.24
4188 4638 2.224523 TGCCACTCGTGAAAAGATCCTT 60.225 45.455 0.00 0.00 0.00 3.36
4189 4639 2.416893 GCCACTCGTGAAAAGATCCTTC 59.583 50.000 0.00 0.00 0.00 3.46
4190 4640 3.003480 CCACTCGTGAAAAGATCCTTCC 58.997 50.000 0.00 0.00 0.00 3.46
4191 4641 3.307059 CCACTCGTGAAAAGATCCTTCCT 60.307 47.826 0.00 0.00 0.00 3.36
4192 4642 4.319177 CACTCGTGAAAAGATCCTTCCTT 58.681 43.478 3.38 0.00 0.00 3.36
4193 4643 4.390297 CACTCGTGAAAAGATCCTTCCTTC 59.610 45.833 3.38 0.00 0.00 3.46
4194 4644 3.935828 CTCGTGAAAAGATCCTTCCTTCC 59.064 47.826 3.38 0.00 0.00 3.46
4195 4645 2.673368 CGTGAAAAGATCCTTCCTTCCG 59.327 50.000 3.38 0.00 0.00 4.30
4196 4646 3.616560 CGTGAAAAGATCCTTCCTTCCGA 60.617 47.826 3.38 0.00 0.00 4.55
4197 4647 3.935828 GTGAAAAGATCCTTCCTTCCGAG 59.064 47.826 3.38 0.00 0.00 4.63
4198 4648 2.700722 AAAGATCCTTCCTTCCGAGC 57.299 50.000 0.00 0.00 0.00 5.03
4199 4649 0.833949 AAGATCCTTCCTTCCGAGCC 59.166 55.000 0.00 0.00 0.00 4.70
4200 4650 0.325671 AGATCCTTCCTTCCGAGCCA 60.326 55.000 0.00 0.00 0.00 4.75
4201 4651 0.179070 GATCCTTCCTTCCGAGCCAC 60.179 60.000 0.00 0.00 0.00 5.01
4202 4652 0.909610 ATCCTTCCTTCCGAGCCACA 60.910 55.000 0.00 0.00 0.00 4.17
4203 4653 0.909610 TCCTTCCTTCCGAGCCACAT 60.910 55.000 0.00 0.00 0.00 3.21
4204 4654 0.745845 CCTTCCTTCCGAGCCACATG 60.746 60.000 0.00 0.00 0.00 3.21
4205 4655 0.036010 CTTCCTTCCGAGCCACATGT 60.036 55.000 0.00 0.00 0.00 3.21
4206 4656 0.400213 TTCCTTCCGAGCCACATGTT 59.600 50.000 0.00 0.00 0.00 2.71
4207 4657 0.036388 TCCTTCCGAGCCACATGTTC 60.036 55.000 0.00 0.00 0.00 3.18
4208 4658 1.361668 CCTTCCGAGCCACATGTTCG 61.362 60.000 10.74 10.74 0.00 3.95
4210 4660 2.047274 CCGAGCCACATGTTCGGT 60.047 61.111 23.43 10.96 46.56 4.69
4211 4661 2.100631 CCGAGCCACATGTTCGGTC 61.101 63.158 23.43 17.02 46.56 4.79
4212 4662 1.079819 CGAGCCACATGTTCGGTCT 60.080 57.895 16.02 8.76 0.00 3.85
4213 4663 1.078759 CGAGCCACATGTTCGGTCTC 61.079 60.000 16.02 14.21 0.00 3.36
4214 4664 1.078759 GAGCCACATGTTCGGTCTCG 61.079 60.000 12.53 0.00 37.82 4.04
4215 4665 1.374252 GCCACATGTTCGGTCTCGT 60.374 57.895 0.00 0.00 37.69 4.18
4216 4666 1.626654 GCCACATGTTCGGTCTCGTG 61.627 60.000 0.00 0.00 37.69 4.35
4217 4667 1.626654 CCACATGTTCGGTCTCGTGC 61.627 60.000 0.00 0.00 37.69 5.34
4218 4668 1.374252 ACATGTTCGGTCTCGTGCC 60.374 57.895 0.00 0.00 37.69 5.01
4226 4676 4.803426 GTCTCGTGCCGCCTCCAG 62.803 72.222 0.00 0.00 0.00 3.86
4234 4684 3.625897 CCGCCTCCAGTGACCACA 61.626 66.667 2.78 0.00 0.00 4.17
4235 4685 2.425592 CGCCTCCAGTGACCACAA 59.574 61.111 2.78 0.00 0.00 3.33
4236 4686 1.961277 CGCCTCCAGTGACCACAAC 60.961 63.158 2.78 0.00 0.00 3.32
4237 4687 1.961277 GCCTCCAGTGACCACAACG 60.961 63.158 2.78 0.00 0.00 4.10
4238 4688 1.445942 CCTCCAGTGACCACAACGT 59.554 57.895 2.78 0.00 0.00 3.99
4239 4689 0.600255 CCTCCAGTGACCACAACGTC 60.600 60.000 2.78 0.00 0.00 4.34
4240 4690 0.939577 CTCCAGTGACCACAACGTCG 60.940 60.000 2.78 0.00 35.40 5.12
4241 4691 1.227147 CCAGTGACCACAACGTCGT 60.227 57.895 2.78 0.00 35.40 4.34
4242 4692 1.213094 CCAGTGACCACAACGTCGTC 61.213 60.000 0.00 0.00 35.40 4.20
4243 4693 0.526739 CAGTGACCACAACGTCGTCA 60.527 55.000 0.00 0.00 31.84 4.35
4244 4694 0.387929 AGTGACCACAACGTCGTCAT 59.612 50.000 0.00 0.00 36.25 3.06
4245 4695 1.202486 AGTGACCACAACGTCGTCATT 60.202 47.619 0.00 4.74 36.25 2.57
4246 4696 1.070843 GTGACCACAACGTCGTCATTG 60.071 52.381 0.00 0.00 36.25 2.82
4247 4697 1.202428 TGACCACAACGTCGTCATTGA 60.202 47.619 0.00 0.00 29.54 2.57
4248 4698 1.455786 GACCACAACGTCGTCATTGAG 59.544 52.381 0.00 0.00 0.00 3.02
4249 4699 1.202486 ACCACAACGTCGTCATTGAGT 60.202 47.619 0.00 0.00 0.00 3.41
4250 4700 1.864711 CCACAACGTCGTCATTGAGTT 59.135 47.619 0.00 0.00 0.00 3.01
4251 4701 2.096909 CCACAACGTCGTCATTGAGTTC 60.097 50.000 0.00 0.00 0.00 3.01
4252 4702 2.794910 CACAACGTCGTCATTGAGTTCT 59.205 45.455 0.00 0.00 0.00 3.01
4253 4703 2.794910 ACAACGTCGTCATTGAGTTCTG 59.205 45.455 0.00 0.00 0.00 3.02
4254 4704 3.049912 CAACGTCGTCATTGAGTTCTGA 58.950 45.455 0.00 0.00 0.00 3.27
4255 4705 2.935042 ACGTCGTCATTGAGTTCTGAG 58.065 47.619 0.00 0.00 0.00 3.35
4256 4706 1.651138 CGTCGTCATTGAGTTCTGAGC 59.349 52.381 0.00 0.00 0.00 4.26
4257 4707 2.669670 CGTCGTCATTGAGTTCTGAGCT 60.670 50.000 0.00 0.00 0.00 4.09
4258 4708 2.920490 GTCGTCATTGAGTTCTGAGCTC 59.080 50.000 13.82 13.82 0.00 4.09
4259 4709 2.094494 TCGTCATTGAGTTCTGAGCTCC 60.094 50.000 17.28 0.00 32.31 4.70
4260 4710 2.094286 CGTCATTGAGTTCTGAGCTCCT 60.094 50.000 17.28 0.00 32.31 3.69
4261 4711 3.260740 GTCATTGAGTTCTGAGCTCCTG 58.739 50.000 17.28 14.37 32.31 3.86
4262 4712 2.235650 TCATTGAGTTCTGAGCTCCTGG 59.764 50.000 17.28 7.77 32.31 4.45
4263 4713 1.722034 TTGAGTTCTGAGCTCCTGGT 58.278 50.000 17.28 0.00 32.31 4.00
4264 4714 2.604912 TGAGTTCTGAGCTCCTGGTA 57.395 50.000 17.28 0.00 32.31 3.25
4265 4715 3.107402 TGAGTTCTGAGCTCCTGGTAT 57.893 47.619 17.28 0.00 32.31 2.73
4266 4716 2.762887 TGAGTTCTGAGCTCCTGGTATG 59.237 50.000 17.28 0.00 32.31 2.39
4267 4717 2.763448 GAGTTCTGAGCTCCTGGTATGT 59.237 50.000 12.15 0.00 0.00 2.29
4268 4718 3.177228 AGTTCTGAGCTCCTGGTATGTT 58.823 45.455 12.15 0.00 0.00 2.71
4269 4719 3.196685 AGTTCTGAGCTCCTGGTATGTTC 59.803 47.826 12.15 0.00 0.00 3.18
4270 4720 2.111384 TCTGAGCTCCTGGTATGTTCC 58.889 52.381 12.15 0.00 0.00 3.62
4271 4721 1.139853 CTGAGCTCCTGGTATGTTCCC 59.860 57.143 12.15 0.00 0.00 3.97
4272 4722 1.273838 TGAGCTCCTGGTATGTTCCCT 60.274 52.381 12.15 0.00 0.00 4.20
4273 4723 1.414550 GAGCTCCTGGTATGTTCCCTC 59.585 57.143 0.87 0.00 0.00 4.30
4274 4724 0.470341 GCTCCTGGTATGTTCCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
4275 4725 1.879575 CTCCTGGTATGTTCCCTCCA 58.120 55.000 0.00 0.00 0.00 3.86
4276 4726 1.486726 CTCCTGGTATGTTCCCTCCAC 59.513 57.143 0.00 0.00 0.00 4.02
4277 4727 0.546598 CCTGGTATGTTCCCTCCACC 59.453 60.000 0.00 0.00 0.00 4.61
4278 4728 1.584724 CTGGTATGTTCCCTCCACCT 58.415 55.000 0.00 0.00 0.00 4.00
4279 4729 1.486726 CTGGTATGTTCCCTCCACCTC 59.513 57.143 0.00 0.00 0.00 3.85
4280 4730 1.080498 TGGTATGTTCCCTCCACCTCT 59.920 52.381 0.00 0.00 0.00 3.69
4281 4731 1.763545 GGTATGTTCCCTCCACCTCTC 59.236 57.143 0.00 0.00 0.00 3.20
4282 4732 2.627217 GGTATGTTCCCTCCACCTCTCT 60.627 54.545 0.00 0.00 0.00 3.10
4283 4733 2.350863 ATGTTCCCTCCACCTCTCTT 57.649 50.000 0.00 0.00 0.00 2.85
4284 4734 1.645710 TGTTCCCTCCACCTCTCTTC 58.354 55.000 0.00 0.00 0.00 2.87
4285 4735 1.150135 TGTTCCCTCCACCTCTCTTCT 59.850 52.381 0.00 0.00 0.00 2.85
4286 4736 1.828595 GTTCCCTCCACCTCTCTTCTC 59.171 57.143 0.00 0.00 0.00 2.87
4287 4737 0.336737 TCCCTCCACCTCTCTTCTCC 59.663 60.000 0.00 0.00 0.00 3.71
4288 4738 0.338120 CCCTCCACCTCTCTTCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
4289 4739 1.273552 CCCTCCACCTCTCTTCTCCTT 60.274 57.143 0.00 0.00 0.00 3.36
4290 4740 2.107366 CCTCCACCTCTCTTCTCCTTC 58.893 57.143 0.00 0.00 0.00 3.46
4291 4741 2.107366 CTCCACCTCTCTTCTCCTTCC 58.893 57.143 0.00 0.00 0.00 3.46
4292 4742 1.719378 TCCACCTCTCTTCTCCTTCCT 59.281 52.381 0.00 0.00 0.00 3.36
4293 4743 2.112691 TCCACCTCTCTTCTCCTTCCTT 59.887 50.000 0.00 0.00 0.00 3.36
4294 4744 2.499693 CCACCTCTCTTCTCCTTCCTTC 59.500 54.545 0.00 0.00 0.00 3.46
4295 4745 3.169099 CACCTCTCTTCTCCTTCCTTCA 58.831 50.000 0.00 0.00 0.00 3.02
4296 4746 3.774216 CACCTCTCTTCTCCTTCCTTCAT 59.226 47.826 0.00 0.00 0.00 2.57
4297 4747 4.030216 ACCTCTCTTCTCCTTCCTTCATC 58.970 47.826 0.00 0.00 0.00 2.92
4298 4748 3.387699 CCTCTCTTCTCCTTCCTTCATCC 59.612 52.174 0.00 0.00 0.00 3.51
4299 4749 3.379452 TCTCTTCTCCTTCCTTCATCCC 58.621 50.000 0.00 0.00 0.00 3.85
4300 4750 3.013417 TCTCTTCTCCTTCCTTCATCCCT 59.987 47.826 0.00 0.00 0.00 4.20
4301 4751 3.379452 TCTTCTCCTTCCTTCATCCCTC 58.621 50.000 0.00 0.00 0.00 4.30
4302 4752 3.013417 TCTTCTCCTTCCTTCATCCCTCT 59.987 47.826 0.00 0.00 0.00 3.69
4303 4753 4.233053 TCTTCTCCTTCCTTCATCCCTCTA 59.767 45.833 0.00 0.00 0.00 2.43
4304 4754 4.841813 TCTCCTTCCTTCATCCCTCTAT 57.158 45.455 0.00 0.00 0.00 1.98
4305 4755 4.746466 TCTCCTTCCTTCATCCCTCTATC 58.254 47.826 0.00 0.00 0.00 2.08
4306 4756 4.421911 TCTCCTTCCTTCATCCCTCTATCT 59.578 45.833 0.00 0.00 0.00 1.98
4307 4757 4.487804 TCCTTCCTTCATCCCTCTATCTG 58.512 47.826 0.00 0.00 0.00 2.90
4308 4758 4.170845 TCCTTCCTTCATCCCTCTATCTGA 59.829 45.833 0.00 0.00 0.00 3.27
4309 4759 4.283212 CCTTCCTTCATCCCTCTATCTGAC 59.717 50.000 0.00 0.00 0.00 3.51
4310 4760 4.542906 TCCTTCATCCCTCTATCTGACA 57.457 45.455 0.00 0.00 0.00 3.58
4311 4761 4.219115 TCCTTCATCCCTCTATCTGACAC 58.781 47.826 0.00 0.00 0.00 3.67
4312 4762 3.963374 CCTTCATCCCTCTATCTGACACA 59.037 47.826 0.00 0.00 0.00 3.72
4313 4763 4.592351 CCTTCATCCCTCTATCTGACACAT 59.408 45.833 0.00 0.00 0.00 3.21
4314 4764 5.279406 CCTTCATCCCTCTATCTGACACATC 60.279 48.000 0.00 0.00 0.00 3.06
4315 4765 5.072129 TCATCCCTCTATCTGACACATCT 57.928 43.478 0.00 0.00 0.00 2.90
4316 4766 5.462240 TCATCCCTCTATCTGACACATCTT 58.538 41.667 0.00 0.00 0.00 2.40
4317 4767 5.901853 TCATCCCTCTATCTGACACATCTTT 59.098 40.000 0.00 0.00 0.00 2.52
4318 4768 6.385176 TCATCCCTCTATCTGACACATCTTTT 59.615 38.462 0.00 0.00 0.00 2.27
4319 4769 6.227298 TCCCTCTATCTGACACATCTTTTC 57.773 41.667 0.00 0.00 0.00 2.29
4320 4770 5.721480 TCCCTCTATCTGACACATCTTTTCA 59.279 40.000 0.00 0.00 0.00 2.69
4321 4771 6.385176 TCCCTCTATCTGACACATCTTTTCAT 59.615 38.462 0.00 0.00 0.00 2.57
4322 4772 6.705381 CCCTCTATCTGACACATCTTTTCATC 59.295 42.308 0.00 0.00 0.00 2.92
4323 4773 6.705381 CCTCTATCTGACACATCTTTTCATCC 59.295 42.308 0.00 0.00 0.00 3.51
4324 4774 7.418827 CCTCTATCTGACACATCTTTTCATCCT 60.419 40.741 0.00 0.00 0.00 3.24
4325 4775 7.495901 TCTATCTGACACATCTTTTCATCCTC 58.504 38.462 0.00 0.00 0.00 3.71
4326 4776 5.752036 TCTGACACATCTTTTCATCCTCT 57.248 39.130 0.00 0.00 0.00 3.69
4327 4777 6.119240 TCTGACACATCTTTTCATCCTCTT 57.881 37.500 0.00 0.00 0.00 2.85
4328 4778 5.936372 TCTGACACATCTTTTCATCCTCTTG 59.064 40.000 0.00 0.00 0.00 3.02
4329 4779 5.005740 TGACACATCTTTTCATCCTCTTGG 58.994 41.667 0.00 0.00 0.00 3.61
4331 4781 5.006386 ACACATCTTTTCATCCTCTTGGAC 58.994 41.667 0.00 0.00 46.51 4.02
4332 4782 4.397417 CACATCTTTTCATCCTCTTGGACC 59.603 45.833 0.00 0.00 46.51 4.46
4333 4783 3.721087 TCTTTTCATCCTCTTGGACCC 57.279 47.619 0.00 0.00 46.51 4.46
4334 4784 3.260205 TCTTTTCATCCTCTTGGACCCT 58.740 45.455 0.00 0.00 46.51 4.34
4335 4785 4.435137 TCTTTTCATCCTCTTGGACCCTA 58.565 43.478 0.00 0.00 46.51 3.53
4336 4786 4.849810 TCTTTTCATCCTCTTGGACCCTAA 59.150 41.667 0.00 0.00 46.51 2.69
4337 4787 4.569719 TTTCATCCTCTTGGACCCTAAC 57.430 45.455 0.00 0.00 46.51 2.34
4338 4788 3.491766 TCATCCTCTTGGACCCTAACT 57.508 47.619 0.00 0.00 46.51 2.24
4339 4789 3.375699 TCATCCTCTTGGACCCTAACTC 58.624 50.000 0.00 0.00 46.51 3.01
4340 4790 3.012959 TCATCCTCTTGGACCCTAACTCT 59.987 47.826 0.00 0.00 46.51 3.24
4341 4791 3.103080 TCCTCTTGGACCCTAACTCTC 57.897 52.381 0.00 0.00 37.46 3.20
4342 4792 1.751924 CCTCTTGGACCCTAACTCTCG 59.248 57.143 0.00 0.00 34.57 4.04
4343 4793 1.751924 CTCTTGGACCCTAACTCTCGG 59.248 57.143 0.00 0.00 0.00 4.63
4344 4794 1.076677 TCTTGGACCCTAACTCTCGGT 59.923 52.381 0.00 0.00 0.00 4.69
4345 4795 1.900486 CTTGGACCCTAACTCTCGGTT 59.100 52.381 0.00 0.00 41.54 4.44
4346 4796 1.263356 TGGACCCTAACTCTCGGTTG 58.737 55.000 0.00 0.00 38.75 3.77
4347 4797 0.108281 GGACCCTAACTCTCGGTTGC 60.108 60.000 0.00 0.00 38.75 4.17
4348 4798 0.458025 GACCCTAACTCTCGGTTGCG 60.458 60.000 0.00 0.00 38.75 4.85
4349 4799 1.183676 ACCCTAACTCTCGGTTGCGT 61.184 55.000 0.00 0.00 38.75 5.24
4350 4800 0.813184 CCCTAACTCTCGGTTGCGTA 59.187 55.000 0.00 0.00 38.75 4.42
4351 4801 1.202268 CCCTAACTCTCGGTTGCGTAG 60.202 57.143 0.00 0.00 38.75 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.009010 GGCGAATCCAAACAATCACATCTAT 59.991 40.000 0.00 0.00 34.01 1.98
1 2 4.335315 GGCGAATCCAAACAATCACATCTA 59.665 41.667 0.00 0.00 34.01 1.98
2 3 3.129287 GGCGAATCCAAACAATCACATCT 59.871 43.478 0.00 0.00 34.01 2.90
3 4 3.438360 GGCGAATCCAAACAATCACATC 58.562 45.455 0.00 0.00 34.01 3.06
4 5 2.166254 GGGCGAATCCAAACAATCACAT 59.834 45.455 0.00 0.00 36.21 3.21
5 6 1.543802 GGGCGAATCCAAACAATCACA 59.456 47.619 0.00 0.00 36.21 3.58
6 7 1.135112 GGGGCGAATCCAAACAATCAC 60.135 52.381 0.00 0.00 36.21 3.06
7 8 1.181786 GGGGCGAATCCAAACAATCA 58.818 50.000 0.00 0.00 36.21 2.57
8 9 1.474330 AGGGGCGAATCCAAACAATC 58.526 50.000 0.00 0.00 36.21 2.67
9 10 1.937191 AAGGGGCGAATCCAAACAAT 58.063 45.000 0.00 0.00 36.21 2.71
10 11 1.710816 AAAGGGGCGAATCCAAACAA 58.289 45.000 0.00 0.00 36.21 2.83
11 12 1.710816 AAAAGGGGCGAATCCAAACA 58.289 45.000 0.00 0.00 36.21 2.83
12 13 2.831685 AAAAAGGGGCGAATCCAAAC 57.168 45.000 0.00 0.00 36.21 2.93
64 65 9.744468 GTGGTTTTACAATAGTTGTTTTCATCT 57.256 29.630 0.20 0.00 42.22 2.90
65 66 8.974408 GGTGGTTTTACAATAGTTGTTTTCATC 58.026 33.333 0.20 0.00 42.22 2.92
77 78 3.136763 TGTTCGCGGTGGTTTTACAATA 58.863 40.909 6.13 0.00 0.00 1.90
91 92 3.245284 TCTTCTCTTCTTTGTTGTTCGCG 59.755 43.478 0.00 0.00 0.00 5.87
124 125 1.494716 GGGACGGGAAAGAAAGGGGA 61.495 60.000 0.00 0.00 0.00 4.81
335 361 1.338973 ACAGTAACGCGGTTTCAGAGA 59.661 47.619 12.47 0.00 0.00 3.10
400 437 6.183361 ACCATAAACATCCTAGCTAGCAATGA 60.183 38.462 27.78 16.73 0.00 2.57
420 457 5.710099 GGACAAAGGTTGAAATCTGACCATA 59.290 40.000 8.53 0.00 35.89 2.74
494 543 3.940221 CTGAGATGAGGCTTTTCAGGAAG 59.060 47.826 9.33 0.00 33.39 3.46
507 556 0.177604 GTGTCCCCAGCTGAGATGAG 59.822 60.000 17.39 0.00 0.00 2.90
508 557 0.545071 TGTGTCCCCAGCTGAGATGA 60.545 55.000 17.39 2.68 0.00 2.92
516 565 4.645809 GGAGAATGTGTCCCCAGC 57.354 61.111 0.00 0.00 0.00 4.85
532 581 2.280628 GTGCCTAGACTCAAATTCGGG 58.719 52.381 0.00 0.00 0.00 5.14
668 847 2.426024 CAAGTCATTGCTATGCAGGCTT 59.574 45.455 14.14 0.00 40.61 4.35
678 863 5.420725 TGTAGATACCACAAGTCATTGCT 57.579 39.130 0.00 0.00 40.27 3.91
740 963 3.004951 CCATCCCTGCTGAAGCCT 58.995 61.111 0.00 0.00 41.18 4.58
758 981 1.386525 ATAGCAATGCACAAGCCCGG 61.387 55.000 8.35 0.00 41.13 5.73
759 982 0.457035 AATAGCAATGCACAAGCCCG 59.543 50.000 8.35 0.00 41.13 6.13
760 983 1.753073 AGAATAGCAATGCACAAGCCC 59.247 47.619 8.35 0.00 41.13 5.19
761 984 3.184541 CAAGAATAGCAATGCACAAGCC 58.815 45.455 8.35 0.00 41.13 4.35
824 1059 4.092968 CAGCCAGTTTATCGTGTAACTTCC 59.907 45.833 0.00 0.00 32.50 3.46
861 1099 0.804989 AGAGGCAACGTTTAGCATGC 59.195 50.000 10.51 10.51 46.39 4.06
942 1184 9.955102 GGAGGAAAAGGTAGAGTTTAGAATTTA 57.045 33.333 0.00 0.00 0.00 1.40
944 1186 7.239984 AGGGAGGAAAAGGTAGAGTTTAGAATT 59.760 37.037 0.00 0.00 0.00 2.17
957 1217 2.270858 GAAGGAGAGGGAGGAAAAGGT 58.729 52.381 0.00 0.00 0.00 3.50
1133 1397 3.825623 GGGCAAGGATGGGAGGGG 61.826 72.222 0.00 0.00 0.00 4.79
1135 1399 2.599597 CAGGGCAAGGATGGGAGG 59.400 66.667 0.00 0.00 0.00 4.30
1136 1400 2.123982 GCAGGGCAAGGATGGGAG 60.124 66.667 0.00 0.00 0.00 4.30
1154 1435 7.485913 CGATCAGATGGTTTCGAAATTGAAAAT 59.514 33.333 14.69 3.38 39.40 1.82
1168 1449 4.202441 CAAGGAATTCCGATCAGATGGTT 58.798 43.478 18.82 0.74 42.08 3.67
1209 1549 2.205022 TCTAAGCTGCATTTGCCTGT 57.795 45.000 1.02 0.00 41.18 4.00
1268 1635 5.141182 GGACATGATCTCCCTGTTACTCTA 58.859 45.833 0.00 0.00 0.00 2.43
1317 1730 5.047092 GGATGGTCCATTTCAACTTGTGATT 60.047 40.000 5.65 0.00 36.28 2.57
1338 1751 0.692419 AGGATCGGCAACTGGAGGAT 60.692 55.000 0.00 0.00 0.00 3.24
1359 1772 4.280929 GCTGACCTTTATCCTTGGTTTGTT 59.719 41.667 0.00 0.00 33.74 2.83
1440 1853 7.818997 ATAACCGATGTAGTCATAACTCAGA 57.181 36.000 0.00 0.00 36.92 3.27
1469 1882 3.242837 CCTGCAAACACATATCCGTCATG 60.243 47.826 0.00 0.00 0.00 3.07
1475 1888 3.367292 CCAACACCTGCAAACACATATCC 60.367 47.826 0.00 0.00 0.00 2.59
1476 1889 3.505680 TCCAACACCTGCAAACACATATC 59.494 43.478 0.00 0.00 0.00 1.63
1663 2078 0.178998 CATCAGATGGGCCCCTGAAG 60.179 60.000 28.20 22.03 42.02 3.02
1670 2085 0.682209 ACAGCAACATCAGATGGGCC 60.682 55.000 20.01 0.00 35.95 5.80
2442 2869 9.383519 CCTAAAAGAGCAGTGAAAACAGATATA 57.616 33.333 0.00 0.00 0.00 0.86
2482 2909 1.155424 TGAGTCCGTTTTGCGACACC 61.155 55.000 0.00 0.00 44.77 4.16
2520 2947 1.352622 ATGTACCCGTGGCCATGGAT 61.353 55.000 40.63 30.55 39.90 3.41
2528 2955 2.673074 CACGCTTATGTACCCGTGG 58.327 57.895 4.30 0.00 45.08 4.94
2539 2966 1.743623 CGGTTGGATGGCACGCTTA 60.744 57.895 0.00 0.00 0.00 3.09
2557 2984 1.732683 CGGACGTTTTGGGCATTGC 60.733 57.895 0.00 0.00 0.00 3.56
2595 3022 4.713321 AGATATTTGGCAGAAGGTTGCATT 59.287 37.500 0.00 0.00 45.86 3.56
2602 3029 7.922811 GGTTGATTTTAGATATTTGGCAGAAGG 59.077 37.037 0.00 0.00 0.00 3.46
2616 3043 8.349983 GTTGTTTAGCAGAAGGTTGATTTTAGA 58.650 33.333 0.00 0.00 0.00 2.10
2641 3068 0.332632 ACTATGGCCCATTGCTGTGT 59.667 50.000 0.00 0.00 40.92 3.72
2648 3075 0.179018 GCGGAAGACTATGGCCCATT 60.179 55.000 0.00 0.00 0.00 3.16
2656 3083 4.101585 TGATCTCATTTGGCGGAAGACTAT 59.898 41.667 0.00 0.00 42.42 2.12
2706 3133 6.037610 GCGAGAGGAGAATGTTAAATCATTGT 59.962 38.462 0.00 0.00 38.03 2.71
2728 3155 0.607762 TATTGCTGGCTGTTTGGCGA 60.608 50.000 0.00 0.00 45.14 5.54
2760 3187 8.406730 TCATTGTATAATCATGCTATTTGGCA 57.593 30.769 0.00 0.00 46.63 4.92
2799 3226 6.404426 TGGTATTTGGTGGAAGGGTAATAA 57.596 37.500 0.00 0.00 0.00 1.40
2805 3232 1.272425 TGCTGGTATTTGGTGGAAGGG 60.272 52.381 0.00 0.00 0.00 3.95
2820 3247 2.264794 GTACCCCACGTCTGCTGG 59.735 66.667 0.00 0.00 0.00 4.85
2861 3288 2.035237 TTGCGGGAGTTTGGACGTCT 62.035 55.000 16.46 0.00 0.00 4.18
2889 3316 1.606668 CGCAAACCAGAAGCAAACCTA 59.393 47.619 0.00 0.00 0.00 3.08
2890 3317 0.385390 CGCAAACCAGAAGCAAACCT 59.615 50.000 0.00 0.00 0.00 3.50
2920 3347 0.388134 GTGTCACATACGTCCACGCT 60.388 55.000 0.00 0.00 44.43 5.07
2928 3355 2.694213 TCCAACATGGTGTCACATACG 58.306 47.619 10.47 0.00 39.03 3.06
2934 3361 0.112025 TGCCATCCAACATGGTGTCA 59.888 50.000 10.47 0.00 41.17 3.58
2979 3406 2.300066 GCAAAACGCCCGAAAGCAC 61.300 57.895 0.00 0.00 32.94 4.40
2980 3407 2.026879 GCAAAACGCCCGAAAGCA 59.973 55.556 0.00 0.00 32.94 3.91
2990 3417 0.854062 CAACACCATGCTGCAAAACG 59.146 50.000 6.36 0.00 0.00 3.60
3162 3596 6.018343 GCTTCAAGATCCTTCACAATAGTAGC 60.018 42.308 0.00 0.00 0.00 3.58
3166 3600 6.748333 TTGCTTCAAGATCCTTCACAATAG 57.252 37.500 0.00 0.00 0.00 1.73
3192 3626 8.950210 AGATACTACACCAGAACATTGAAATTG 58.050 33.333 0.00 0.00 0.00 2.32
3332 3766 4.322349 CCCTTTTTGGCAACCGATGATAAA 60.322 41.667 0.00 0.00 0.00 1.40
3413 3849 3.778265 ACCATGTAAAAGAAGGGTGCAT 58.222 40.909 0.00 0.00 0.00 3.96
3414 3850 3.237268 ACCATGTAAAAGAAGGGTGCA 57.763 42.857 0.00 0.00 0.00 4.57
3485 3922 5.475220 ACATGTGATTTTACGACAATTGGGA 59.525 36.000 10.83 0.00 0.00 4.37
3566 4003 4.303086 ACTATCTGACATAAACCCGTCG 57.697 45.455 0.00 0.00 34.78 5.12
3576 4013 5.602561 TGCTACCCACATAACTATCTGACAT 59.397 40.000 0.00 0.00 0.00 3.06
3666 4103 3.153919 ACTTGTTTGTTGGGCGTATCAT 58.846 40.909 0.00 0.00 0.00 2.45
3671 4108 0.454196 GTGACTTGTTTGTTGGGCGT 59.546 50.000 0.00 0.00 0.00 5.68
3672 4109 0.453793 TGTGACTTGTTTGTTGGGCG 59.546 50.000 0.00 0.00 0.00 6.13
3726 4167 3.244033 GCATCACTGCTAGAAGACTGT 57.756 47.619 4.16 0.00 45.32 3.55
3792 4233 9.308000 ACACTAAAACAATCCTCCATCAATAAA 57.692 29.630 0.00 0.00 0.00 1.40
3793 4234 8.739039 CACACTAAAACAATCCTCCATCAATAA 58.261 33.333 0.00 0.00 0.00 1.40
3906 4356 7.939782 TGAACACATATATCCGCAAATGAAAT 58.060 30.769 0.00 0.00 0.00 2.17
3918 4368 9.128107 CAACCAAACAAGTTGAACACATATATC 57.872 33.333 10.54 0.00 46.03 1.63
3945 4395 9.309516 GAATAAAATACTACGTCCATTCAGTCA 57.690 33.333 0.00 0.00 0.00 3.41
3952 4402 7.495055 ACCGAAGAATAAAATACTACGTCCAT 58.505 34.615 0.00 0.00 0.00 3.41
3953 4403 6.866480 ACCGAAGAATAAAATACTACGTCCA 58.134 36.000 0.00 0.00 0.00 4.02
3967 4417 4.583073 TCCATCATCTCGAACCGAAGAATA 59.417 41.667 0.00 0.00 34.74 1.75
3972 4422 2.738643 GCTTCCATCATCTCGAACCGAA 60.739 50.000 0.00 0.00 34.74 4.30
3976 4426 4.528531 GAAAGCTTCCATCATCTCGAAC 57.471 45.455 0.00 0.00 0.00 3.95
4000 4450 0.898326 GAGCACGGGATTTGGGGTTT 60.898 55.000 0.00 0.00 0.00 3.27
4036 4486 1.140407 GGCGTCGAGAGTGAAATCGG 61.140 60.000 0.00 0.00 39.38 4.18
4045 4495 1.137825 GAGACAAGGGCGTCGAGAG 59.862 63.158 0.00 0.00 40.98 3.20
4058 4508 1.229529 GGGTGGGAAGGAGGAGACA 60.230 63.158 0.00 0.00 0.00 3.41
4075 4525 3.562732 GACGAGGGTTTGGGGTGGG 62.563 68.421 0.00 0.00 0.00 4.61
4076 4526 2.033602 GACGAGGGTTTGGGGTGG 59.966 66.667 0.00 0.00 0.00 4.61
4077 4527 1.003718 GAGACGAGGGTTTGGGGTG 60.004 63.158 0.00 0.00 0.00 4.61
4078 4528 2.222013 GGAGACGAGGGTTTGGGGT 61.222 63.158 0.00 0.00 0.00 4.95
4079 4529 0.616679 TAGGAGACGAGGGTTTGGGG 60.617 60.000 0.00 0.00 0.00 4.96
4080 4530 0.535797 GTAGGAGACGAGGGTTTGGG 59.464 60.000 0.00 0.00 0.00 4.12
4081 4531 0.535797 GGTAGGAGACGAGGGTTTGG 59.464 60.000 0.00 0.00 0.00 3.28
4082 4532 0.535797 GGGTAGGAGACGAGGGTTTG 59.464 60.000 0.00 0.00 0.00 2.93
4083 4533 0.616964 GGGGTAGGAGACGAGGGTTT 60.617 60.000 0.00 0.00 0.00 3.27
4084 4534 1.001376 GGGGTAGGAGACGAGGGTT 59.999 63.158 0.00 0.00 0.00 4.11
4085 4535 1.934870 AGGGGTAGGAGACGAGGGT 60.935 63.158 0.00 0.00 0.00 4.34
4086 4536 1.152715 GAGGGGTAGGAGACGAGGG 60.153 68.421 0.00 0.00 0.00 4.30
4087 4537 0.179012 GAGAGGGGTAGGAGACGAGG 60.179 65.000 0.00 0.00 0.00 4.63
4088 4538 0.841289 AGAGAGGGGTAGGAGACGAG 59.159 60.000 0.00 0.00 0.00 4.18
4089 4539 0.838608 GAGAGAGGGGTAGGAGACGA 59.161 60.000 0.00 0.00 0.00 4.20
4090 4540 0.547075 TGAGAGAGGGGTAGGAGACG 59.453 60.000 0.00 0.00 0.00 4.18
4091 4541 2.380941 GTTGAGAGAGGGGTAGGAGAC 58.619 57.143 0.00 0.00 0.00 3.36
4092 4542 1.288335 GGTTGAGAGAGGGGTAGGAGA 59.712 57.143 0.00 0.00 0.00 3.71
4093 4543 1.007238 TGGTTGAGAGAGGGGTAGGAG 59.993 57.143 0.00 0.00 0.00 3.69
4094 4544 1.089978 TGGTTGAGAGAGGGGTAGGA 58.910 55.000 0.00 0.00 0.00 2.94
4095 4545 1.196012 GTGGTTGAGAGAGGGGTAGG 58.804 60.000 0.00 0.00 0.00 3.18
4096 4546 1.196012 GGTGGTTGAGAGAGGGGTAG 58.804 60.000 0.00 0.00 0.00 3.18
4097 4547 0.790993 AGGTGGTTGAGAGAGGGGTA 59.209 55.000 0.00 0.00 0.00 3.69
4098 4548 0.790993 TAGGTGGTTGAGAGAGGGGT 59.209 55.000 0.00 0.00 0.00 4.95
4099 4549 1.196012 GTAGGTGGTTGAGAGAGGGG 58.804 60.000 0.00 0.00 0.00 4.79
4100 4550 0.818296 CGTAGGTGGTTGAGAGAGGG 59.182 60.000 0.00 0.00 0.00 4.30
4101 4551 0.173708 GCGTAGGTGGTTGAGAGAGG 59.826 60.000 0.00 0.00 0.00 3.69
4102 4552 0.173708 GGCGTAGGTGGTTGAGAGAG 59.826 60.000 0.00 0.00 0.00 3.20
4103 4553 1.592400 CGGCGTAGGTGGTTGAGAGA 61.592 60.000 0.00 0.00 0.00 3.10
4104 4554 1.153823 CGGCGTAGGTGGTTGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
4105 4555 2.967397 CGGCGTAGGTGGTTGAGA 59.033 61.111 0.00 0.00 0.00 3.27
4106 4556 2.813908 GCGGCGTAGGTGGTTGAG 60.814 66.667 9.37 0.00 0.00 3.02
4107 4557 4.382320 GGCGGCGTAGGTGGTTGA 62.382 66.667 9.37 0.00 0.00 3.18
4120 4570 3.937062 GAGTAATTGCGGCGGCGG 61.937 66.667 33.02 14.77 44.10 6.13
4121 4571 3.937062 GGAGTAATTGCGGCGGCG 61.937 66.667 28.70 28.70 44.10 6.46
4122 4572 3.583086 GGGAGTAATTGCGGCGGC 61.583 66.667 9.78 9.68 40.52 6.53
4123 4573 3.269347 CGGGAGTAATTGCGGCGG 61.269 66.667 9.78 0.00 0.00 6.13
4124 4574 3.937062 GCGGGAGTAATTGCGGCG 61.937 66.667 0.51 0.51 34.07 6.46
4125 4575 3.583086 GGCGGGAGTAATTGCGGC 61.583 66.667 0.00 0.00 41.72 6.53
4126 4576 1.436983 GAAGGCGGGAGTAATTGCGG 61.437 60.000 0.00 0.00 0.00 5.69
4127 4577 1.436983 GGAAGGCGGGAGTAATTGCG 61.437 60.000 0.00 0.00 0.00 4.85
4128 4578 1.436983 CGGAAGGCGGGAGTAATTGC 61.437 60.000 0.00 0.00 0.00 3.56
4129 4579 2.690326 CGGAAGGCGGGAGTAATTG 58.310 57.895 0.00 0.00 0.00 2.32
4152 4602 4.077188 GCAAGACGCGTCACAGGC 62.077 66.667 37.85 28.99 0.00 4.85
4153 4603 3.414700 GGCAAGACGCGTCACAGG 61.415 66.667 37.85 24.35 43.84 4.00
4154 4604 2.661537 TGGCAAGACGCGTCACAG 60.662 61.111 37.85 26.91 43.84 3.66
4155 4605 2.964925 GTGGCAAGACGCGTCACA 60.965 61.111 37.85 26.80 43.84 3.58
4156 4606 2.658707 GAGTGGCAAGACGCGTCAC 61.659 63.158 37.85 27.22 43.84 3.67
4157 4607 2.355837 GAGTGGCAAGACGCGTCA 60.356 61.111 37.85 17.61 43.84 4.35
4158 4608 3.470567 CGAGTGGCAAGACGCGTC 61.471 66.667 31.30 31.30 43.84 5.19
4159 4609 4.280494 ACGAGTGGCAAGACGCGT 62.280 61.111 13.85 13.85 45.78 6.01
4160 4610 3.767230 CACGAGTGGCAAGACGCG 61.767 66.667 3.53 3.53 43.75 6.01
4161 4611 1.495584 TTTCACGAGTGGCAAGACGC 61.496 55.000 3.19 0.00 41.28 5.19
4162 4612 0.934496 TTTTCACGAGTGGCAAGACG 59.066 50.000 3.19 0.00 0.00 4.18
4163 4613 2.210116 TCTTTTCACGAGTGGCAAGAC 58.790 47.619 11.43 0.00 29.82 3.01
4164 4614 2.613026 TCTTTTCACGAGTGGCAAGA 57.387 45.000 11.43 11.43 31.26 3.02
4165 4615 2.160417 GGATCTTTTCACGAGTGGCAAG 59.840 50.000 3.19 6.26 0.00 4.01
4166 4616 2.151202 GGATCTTTTCACGAGTGGCAA 58.849 47.619 3.19 0.00 0.00 4.52
4167 4617 1.347707 AGGATCTTTTCACGAGTGGCA 59.652 47.619 3.19 0.00 0.00 4.92
4168 4618 2.100605 AGGATCTTTTCACGAGTGGC 57.899 50.000 3.19 0.00 0.00 5.01
4169 4619 3.003480 GGAAGGATCTTTTCACGAGTGG 58.997 50.000 3.19 0.00 0.00 4.00
4170 4620 3.931578 AGGAAGGATCTTTTCACGAGTG 58.068 45.455 0.00 0.00 0.00 3.51
4171 4621 4.563786 GGAAGGAAGGATCTTTTCACGAGT 60.564 45.833 0.00 0.00 0.00 4.18
4172 4622 3.935828 GGAAGGAAGGATCTTTTCACGAG 59.064 47.826 0.00 0.00 0.00 4.18
4173 4623 3.616560 CGGAAGGAAGGATCTTTTCACGA 60.617 47.826 0.00 0.00 0.00 4.35
4174 4624 2.673368 CGGAAGGAAGGATCTTTTCACG 59.327 50.000 0.00 0.00 0.00 4.35
4175 4625 3.935828 CTCGGAAGGAAGGATCTTTTCAC 59.064 47.826 0.00 0.00 0.00 3.18
4176 4626 3.619979 GCTCGGAAGGAAGGATCTTTTCA 60.620 47.826 0.00 0.00 0.00 2.69
4177 4627 2.939756 GCTCGGAAGGAAGGATCTTTTC 59.060 50.000 0.00 0.00 0.00 2.29
4178 4628 2.356227 GGCTCGGAAGGAAGGATCTTTT 60.356 50.000 0.00 0.00 0.00 2.27
4179 4629 1.210722 GGCTCGGAAGGAAGGATCTTT 59.789 52.381 0.00 0.00 0.00 2.52
4180 4630 0.833949 GGCTCGGAAGGAAGGATCTT 59.166 55.000 0.00 0.00 0.00 2.40
4181 4631 0.325671 TGGCTCGGAAGGAAGGATCT 60.326 55.000 0.00 0.00 0.00 2.75
4182 4632 0.179070 GTGGCTCGGAAGGAAGGATC 60.179 60.000 0.00 0.00 0.00 3.36
4183 4633 0.909610 TGTGGCTCGGAAGGAAGGAT 60.910 55.000 0.00 0.00 0.00 3.24
4184 4634 0.909610 ATGTGGCTCGGAAGGAAGGA 60.910 55.000 0.00 0.00 0.00 3.36
4185 4635 0.745845 CATGTGGCTCGGAAGGAAGG 60.746 60.000 0.00 0.00 0.00 3.46
4186 4636 0.036010 ACATGTGGCTCGGAAGGAAG 60.036 55.000 0.00 0.00 0.00 3.46
4187 4637 0.400213 AACATGTGGCTCGGAAGGAA 59.600 50.000 0.00 0.00 0.00 3.36
4188 4638 0.036388 GAACATGTGGCTCGGAAGGA 60.036 55.000 0.00 0.00 0.00 3.36
4189 4639 1.361668 CGAACATGTGGCTCGGAAGG 61.362 60.000 9.99 0.00 0.00 3.46
4190 4640 2.081526 CGAACATGTGGCTCGGAAG 58.918 57.895 9.99 0.00 0.00 3.46
4191 4641 4.277239 CGAACATGTGGCTCGGAA 57.723 55.556 9.99 0.00 0.00 4.30
4194 4644 1.078759 GAGACCGAACATGTGGCTCG 61.079 60.000 10.74 10.74 0.00 5.03
4195 4645 1.078759 CGAGACCGAACATGTGGCTC 61.079 60.000 0.00 2.93 38.22 4.70
4196 4646 1.079819 CGAGACCGAACATGTGGCT 60.080 57.895 0.00 0.00 38.22 4.75
4197 4647 1.374252 ACGAGACCGAACATGTGGC 60.374 57.895 0.00 0.00 39.50 5.01
4198 4648 1.626654 GCACGAGACCGAACATGTGG 61.627 60.000 0.00 0.00 39.50 4.17
4199 4649 1.626654 GGCACGAGACCGAACATGTG 61.627 60.000 0.00 0.00 39.50 3.21
4200 4650 1.374252 GGCACGAGACCGAACATGT 60.374 57.895 0.00 0.00 39.50 3.21
4201 4651 3.474806 GGCACGAGACCGAACATG 58.525 61.111 0.00 0.00 39.50 3.21
4217 4667 3.177194 TTGTGGTCACTGGAGGCGG 62.177 63.158 2.66 0.00 0.00 6.13
4218 4668 1.961277 GTTGTGGTCACTGGAGGCG 60.961 63.158 2.66 0.00 0.00 5.52
4219 4669 1.961277 CGTTGTGGTCACTGGAGGC 60.961 63.158 2.66 0.00 0.00 4.70
4220 4670 0.600255 GACGTTGTGGTCACTGGAGG 60.600 60.000 2.66 0.00 36.91 4.30
4221 4671 0.939577 CGACGTTGTGGTCACTGGAG 60.940 60.000 2.66 0.00 36.73 3.86
4222 4672 1.066752 CGACGTTGTGGTCACTGGA 59.933 57.895 2.66 0.00 36.73 3.86
4223 4673 1.213094 GACGACGTTGTGGTCACTGG 61.213 60.000 14.59 0.00 40.20 4.00
4224 4674 0.526739 TGACGACGTTGTGGTCACTG 60.527 55.000 14.59 0.00 43.97 3.66
4225 4675 1.811195 TGACGACGTTGTGGTCACT 59.189 52.632 14.59 0.00 43.97 3.41
4226 4676 4.405762 TGACGACGTTGTGGTCAC 57.594 55.556 14.59 0.00 43.97 3.67
4228 4678 1.455786 CTCAATGACGACGTTGTGGTC 59.544 52.381 14.59 8.02 41.92 4.02
4229 4679 1.202486 ACTCAATGACGACGTTGTGGT 60.202 47.619 14.59 15.99 41.92 4.16
4230 4680 1.497991 ACTCAATGACGACGTTGTGG 58.502 50.000 14.59 15.52 41.92 4.17
4231 4681 2.794910 AGAACTCAATGACGACGTTGTG 59.205 45.455 14.59 16.83 41.92 3.33
4232 4682 2.794910 CAGAACTCAATGACGACGTTGT 59.205 45.455 8.55 8.55 41.92 3.32
4233 4683 3.049912 TCAGAACTCAATGACGACGTTG 58.950 45.455 12.72 12.72 42.42 4.10
4234 4684 3.309388 CTCAGAACTCAATGACGACGTT 58.691 45.455 0.13 0.00 0.00 3.99
4235 4685 2.922758 GCTCAGAACTCAATGACGACGT 60.923 50.000 0.00 0.00 0.00 4.34
4236 4686 1.651138 GCTCAGAACTCAATGACGACG 59.349 52.381 0.00 0.00 0.00 5.12
4237 4687 2.920490 GAGCTCAGAACTCAATGACGAC 59.080 50.000 9.40 0.00 34.18 4.34
4238 4688 2.094494 GGAGCTCAGAACTCAATGACGA 60.094 50.000 17.19 0.00 35.79 4.20
4239 4689 2.094286 AGGAGCTCAGAACTCAATGACG 60.094 50.000 17.19 0.00 35.79 4.35
4240 4690 3.260740 CAGGAGCTCAGAACTCAATGAC 58.739 50.000 17.19 0.00 35.79 3.06
4241 4691 2.235650 CCAGGAGCTCAGAACTCAATGA 59.764 50.000 17.19 0.00 35.79 2.57
4242 4692 2.027377 ACCAGGAGCTCAGAACTCAATG 60.027 50.000 17.19 1.59 35.79 2.82
4243 4693 2.264455 ACCAGGAGCTCAGAACTCAAT 58.736 47.619 17.19 0.00 35.79 2.57
4244 4694 1.722034 ACCAGGAGCTCAGAACTCAA 58.278 50.000 17.19 0.00 35.79 3.02
4245 4695 2.604912 TACCAGGAGCTCAGAACTCA 57.395 50.000 17.19 0.00 35.79 3.41
4246 4696 2.763448 ACATACCAGGAGCTCAGAACTC 59.237 50.000 17.19 0.00 0.00 3.01
4247 4697 2.826488 ACATACCAGGAGCTCAGAACT 58.174 47.619 17.19 0.00 0.00 3.01
4248 4698 3.526534 GAACATACCAGGAGCTCAGAAC 58.473 50.000 17.19 0.00 0.00 3.01
4249 4699 2.501723 GGAACATACCAGGAGCTCAGAA 59.498 50.000 17.19 0.00 0.00 3.02
4250 4700 2.111384 GGAACATACCAGGAGCTCAGA 58.889 52.381 17.19 0.00 0.00 3.27
4251 4701 1.139853 GGGAACATACCAGGAGCTCAG 59.860 57.143 17.19 7.26 0.00 3.35
4252 4702 1.204146 GGGAACATACCAGGAGCTCA 58.796 55.000 17.19 0.00 0.00 4.26
4253 4703 1.414550 GAGGGAACATACCAGGAGCTC 59.585 57.143 4.71 4.71 0.00 4.09
4254 4704 1.501582 GAGGGAACATACCAGGAGCT 58.498 55.000 0.00 0.00 0.00 4.09
4255 4705 0.470341 GGAGGGAACATACCAGGAGC 59.530 60.000 0.00 0.00 0.00 4.70
4256 4706 1.486726 GTGGAGGGAACATACCAGGAG 59.513 57.143 0.00 0.00 32.68 3.69
4257 4707 1.580059 GTGGAGGGAACATACCAGGA 58.420 55.000 0.00 0.00 32.68 3.86
4258 4708 0.546598 GGTGGAGGGAACATACCAGG 59.453 60.000 0.00 0.00 32.68 4.45
4259 4709 1.486726 GAGGTGGAGGGAACATACCAG 59.513 57.143 0.00 0.00 33.77 4.00
4260 4710 1.080498 AGAGGTGGAGGGAACATACCA 59.920 52.381 0.00 0.00 33.77 3.25
4261 4711 1.763545 GAGAGGTGGAGGGAACATACC 59.236 57.143 0.00 0.00 0.00 2.73
4262 4712 2.753247 AGAGAGGTGGAGGGAACATAC 58.247 52.381 0.00 0.00 0.00 2.39
4263 4713 3.012959 AGAAGAGAGGTGGAGGGAACATA 59.987 47.826 0.00 0.00 0.00 2.29
4264 4714 2.192263 GAAGAGAGGTGGAGGGAACAT 58.808 52.381 0.00 0.00 0.00 2.71
4265 4715 1.150135 AGAAGAGAGGTGGAGGGAACA 59.850 52.381 0.00 0.00 0.00 3.18
4266 4716 1.828595 GAGAAGAGAGGTGGAGGGAAC 59.171 57.143 0.00 0.00 0.00 3.62
4267 4717 1.273324 GGAGAAGAGAGGTGGAGGGAA 60.273 57.143 0.00 0.00 0.00 3.97
4268 4718 0.336737 GGAGAAGAGAGGTGGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
4269 4719 0.338120 AGGAGAAGAGAGGTGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
4270 4720 2.107366 GAAGGAGAAGAGAGGTGGAGG 58.893 57.143 0.00 0.00 0.00 4.30
4271 4721 2.107366 GGAAGGAGAAGAGAGGTGGAG 58.893 57.143 0.00 0.00 0.00 3.86
4272 4722 1.719378 AGGAAGGAGAAGAGAGGTGGA 59.281 52.381 0.00 0.00 0.00 4.02
4273 4723 2.246091 AGGAAGGAGAAGAGAGGTGG 57.754 55.000 0.00 0.00 0.00 4.61
4274 4724 3.169099 TGAAGGAAGGAGAAGAGAGGTG 58.831 50.000 0.00 0.00 0.00 4.00
4275 4725 3.551635 TGAAGGAAGGAGAAGAGAGGT 57.448 47.619 0.00 0.00 0.00 3.85
4276 4726 3.387699 GGATGAAGGAAGGAGAAGAGAGG 59.612 52.174 0.00 0.00 0.00 3.69
4277 4727 3.387699 GGGATGAAGGAAGGAGAAGAGAG 59.612 52.174 0.00 0.00 0.00 3.20
4278 4728 3.013417 AGGGATGAAGGAAGGAGAAGAGA 59.987 47.826 0.00 0.00 0.00 3.10
4279 4729 3.383223 AGGGATGAAGGAAGGAGAAGAG 58.617 50.000 0.00 0.00 0.00 2.85
4280 4730 3.013417 AGAGGGATGAAGGAAGGAGAAGA 59.987 47.826 0.00 0.00 0.00 2.87
4281 4731 3.383223 AGAGGGATGAAGGAAGGAGAAG 58.617 50.000 0.00 0.00 0.00 2.85
4282 4732 3.498614 AGAGGGATGAAGGAAGGAGAA 57.501 47.619 0.00 0.00 0.00 2.87
4283 4733 4.421911 AGATAGAGGGATGAAGGAAGGAGA 59.578 45.833 0.00 0.00 0.00 3.71
4284 4734 4.527816 CAGATAGAGGGATGAAGGAAGGAG 59.472 50.000 0.00 0.00 0.00 3.69
4285 4735 4.170845 TCAGATAGAGGGATGAAGGAAGGA 59.829 45.833 0.00 0.00 0.00 3.36
4286 4736 4.283212 GTCAGATAGAGGGATGAAGGAAGG 59.717 50.000 0.00 0.00 0.00 3.46
4287 4737 4.898265 TGTCAGATAGAGGGATGAAGGAAG 59.102 45.833 0.00 0.00 0.00 3.46
4288 4738 4.651503 GTGTCAGATAGAGGGATGAAGGAA 59.348 45.833 0.00 0.00 0.00 3.36
4289 4739 4.219115 GTGTCAGATAGAGGGATGAAGGA 58.781 47.826 0.00 0.00 0.00 3.36
4290 4740 3.963374 TGTGTCAGATAGAGGGATGAAGG 59.037 47.826 0.00 0.00 0.00 3.46
4291 4741 5.539574 AGATGTGTCAGATAGAGGGATGAAG 59.460 44.000 0.00 0.00 0.00 3.02
4292 4742 5.462240 AGATGTGTCAGATAGAGGGATGAA 58.538 41.667 0.00 0.00 0.00 2.57
4293 4743 5.072129 AGATGTGTCAGATAGAGGGATGA 57.928 43.478 0.00 0.00 0.00 2.92
4294 4744 5.804944 AAGATGTGTCAGATAGAGGGATG 57.195 43.478 0.00 0.00 0.00 3.51
4295 4745 6.385176 TGAAAAGATGTGTCAGATAGAGGGAT 59.615 38.462 0.00 0.00 0.00 3.85
4296 4746 5.721480 TGAAAAGATGTGTCAGATAGAGGGA 59.279 40.000 0.00 0.00 0.00 4.20
4297 4747 5.982356 TGAAAAGATGTGTCAGATAGAGGG 58.018 41.667 0.00 0.00 0.00 4.30
4298 4748 6.705381 GGATGAAAAGATGTGTCAGATAGAGG 59.295 42.308 0.00 0.00 0.00 3.69
4299 4749 7.499292 AGGATGAAAAGATGTGTCAGATAGAG 58.501 38.462 0.00 0.00 0.00 2.43
4300 4750 7.344093 AGAGGATGAAAAGATGTGTCAGATAGA 59.656 37.037 0.00 0.00 0.00 1.98
4301 4751 7.499292 AGAGGATGAAAAGATGTGTCAGATAG 58.501 38.462 0.00 0.00 0.00 2.08
4302 4752 7.429374 AGAGGATGAAAAGATGTGTCAGATA 57.571 36.000 0.00 0.00 0.00 1.98
4303 4753 6.310764 AGAGGATGAAAAGATGTGTCAGAT 57.689 37.500 0.00 0.00 0.00 2.90
4304 4754 5.752036 AGAGGATGAAAAGATGTGTCAGA 57.248 39.130 0.00 0.00 0.00 3.27
4305 4755 5.123502 CCAAGAGGATGAAAAGATGTGTCAG 59.876 44.000 0.00 0.00 36.89 3.51
4306 4756 5.005740 CCAAGAGGATGAAAAGATGTGTCA 58.994 41.667 0.00 0.00 36.89 3.58
4307 4757 5.248640 TCCAAGAGGATGAAAAGATGTGTC 58.751 41.667 0.00 0.00 39.61 3.67
4308 4758 5.246981 TCCAAGAGGATGAAAAGATGTGT 57.753 39.130 0.00 0.00 39.61 3.72
4321 4771 2.620886 CGAGAGTTAGGGTCCAAGAGGA 60.621 54.545 0.00 0.00 43.21 3.71
4322 4772 1.751924 CGAGAGTTAGGGTCCAAGAGG 59.248 57.143 0.00 0.00 0.00 3.69
4323 4773 1.751924 CCGAGAGTTAGGGTCCAAGAG 59.248 57.143 0.00 0.00 0.00 2.85
4324 4774 1.076677 ACCGAGAGTTAGGGTCCAAGA 59.923 52.381 0.00 0.00 0.00 3.02
4325 4775 1.558233 ACCGAGAGTTAGGGTCCAAG 58.442 55.000 0.00 0.00 0.00 3.61
4326 4776 1.621814 CAACCGAGAGTTAGGGTCCAA 59.378 52.381 0.00 0.00 36.18 3.53
4327 4777 1.263356 CAACCGAGAGTTAGGGTCCA 58.737 55.000 0.00 0.00 36.18 4.02
4328 4778 0.108281 GCAACCGAGAGTTAGGGTCC 60.108 60.000 0.00 0.00 36.18 4.46
4329 4779 0.458025 CGCAACCGAGAGTTAGGGTC 60.458 60.000 0.00 0.00 36.18 4.46
4330 4780 1.183676 ACGCAACCGAGAGTTAGGGT 61.184 55.000 0.00 0.00 36.18 4.34
4331 4781 0.813184 TACGCAACCGAGAGTTAGGG 59.187 55.000 0.00 0.00 36.18 3.53
4332 4782 1.798079 GCTACGCAACCGAGAGTTAGG 60.798 57.143 0.00 0.00 36.18 2.69
4333 4783 1.546834 GCTACGCAACCGAGAGTTAG 58.453 55.000 0.00 0.00 36.18 2.34
4334 4784 0.171903 GGCTACGCAACCGAGAGTTA 59.828 55.000 0.00 0.00 36.18 2.24
4335 4785 1.080025 GGCTACGCAACCGAGAGTT 60.080 57.895 0.00 0.00 40.16 3.01
4336 4786 2.214181 CTGGCTACGCAACCGAGAGT 62.214 60.000 0.00 0.00 38.29 3.24
4337 4787 1.517257 CTGGCTACGCAACCGAGAG 60.517 63.158 0.00 0.00 38.29 3.20
4338 4788 2.571757 CTGGCTACGCAACCGAGA 59.428 61.111 0.00 0.00 38.29 4.04
4339 4789 2.509336 CCTGGCTACGCAACCGAG 60.509 66.667 0.00 0.00 38.29 4.63
4340 4790 2.874664 AACCTGGCTACGCAACCGA 61.875 57.895 0.00 0.00 38.29 4.69
4341 4791 2.358247 AACCTGGCTACGCAACCG 60.358 61.111 0.00 0.00 41.14 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.