Multiple sequence alignment - TraesCS7B01G436400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G436400 chr7B 100.000 2972 0 0 1 2972 702534218 702537189 0.000000e+00 5489.0
1 TraesCS7B01G436400 chr7B 91.114 1463 56 28 992 2426 702854463 702853047 0.000000e+00 1914.0
2 TraesCS7B01G436400 chr7B 89.541 545 35 8 2442 2972 702822248 702821712 0.000000e+00 671.0
3 TraesCS7B01G436400 chr7B 94.186 430 15 3 1999 2427 702823732 702823312 0.000000e+00 647.0
4 TraesCS7B01G436400 chr7B 92.837 349 10 5 1653 2001 702824103 702823770 2.660000e-135 492.0
5 TraesCS7B01G436400 chr7B 91.854 356 19 7 650 1003 702855020 702854673 3.440000e-134 488.0
6 TraesCS7B01G436400 chr7B 92.105 304 20 3 652 953 702825519 702825218 2.740000e-115 425.0
7 TraesCS7B01G436400 chr7B 91.205 307 16 5 2666 2972 702851812 702851517 9.920000e-110 407.0
8 TraesCS7B01G436400 chr7B 86.207 377 44 8 1 374 702688973 702688602 4.610000e-108 401.0
9 TraesCS7B01G436400 chr7B 87.164 335 23 5 2529 2846 702509897 702510228 2.180000e-96 363.0
10 TraesCS7B01G436400 chr7B 96.552 145 5 0 2442 2586 702851974 702851830 1.060000e-59 241.0
11 TraesCS7B01G436400 chr7B 87.342 158 19 1 2815 2972 702554192 702554348 2.350000e-41 180.0
12 TraesCS7B01G436400 chr7B 96.512 86 3 0 2887 2972 702510420 702510505 3.090000e-30 143.0
13 TraesCS7B01G436400 chr7B 90.741 54 5 0 2919 2972 702170905 702170958 4.110000e-09 73.1
14 TraesCS7B01G436400 chr7A 92.084 1238 48 26 992 2216 704387750 704388950 0.000000e+00 1698.0
15 TraesCS7B01G436400 chr7A 92.670 191 12 2 701 891 704380471 704380659 1.050000e-69 274.0
16 TraesCS7B01G436400 chr7A 89.091 110 9 2 894 1003 704387401 704387507 1.860000e-27 134.0
17 TraesCS7B01G436400 chr7A 83.486 109 16 2 2864 2972 704327786 704327892 1.880000e-17 100.0
18 TraesCS7B01G436400 chr7A 93.333 60 2 1 650 707 704378990 704379049 1.470000e-13 87.9
19 TraesCS7B01G436400 chr7D 93.404 1031 44 9 992 2001 612977368 612978395 0.000000e+00 1506.0
20 TraesCS7B01G436400 chr7D 89.342 441 36 4 2002 2438 612978441 612978874 7.250000e-151 544.0
21 TraesCS7B01G436400 chr7D 89.474 266 22 5 702 967 612976859 612977118 6.140000e-87 331.0
22 TraesCS7B01G436400 chr7D 80.000 110 20 2 2864 2972 612708063 612708171 2.460000e-11 80.5
23 TraesCS7B01G436400 chr7D 91.525 59 3 1 651 707 612975402 612975460 2.460000e-11 80.5
24 TraesCS7B01G436400 chr7D 89.796 49 5 0 2921 2969 612926344 612926392 2.470000e-06 63.9
25 TraesCS7B01G436400 chr4B 85.494 779 70 28 997 1767 640941 640198 0.000000e+00 773.0
26 TraesCS7B01G436400 chr4B 90.584 308 23 2 1663 1964 640245 639938 1.280000e-108 403.0
27 TraesCS7B01G436400 chr4B 86.145 166 16 3 709 868 641639 641475 3.940000e-39 172.0
28 TraesCS7B01G436400 chr4B 89.130 46 4 1 2180 2224 639493 639448 4.140000e-04 56.5
29 TraesCS7B01G436400 chr4D 90.756 476 41 2 997 1469 1239479 1239954 1.500000e-177 632.0
30 TraesCS7B01G436400 chr4D 89.068 311 25 3 1663 1964 1240178 1240488 7.780000e-101 377.0
31 TraesCS7B01G436400 chr4D 88.732 213 19 4 667 876 1238708 1238918 3.800000e-64 255.0
32 TraesCS7B01G436400 chr4A 86.765 476 45 5 997 1472 603534976 603534519 5.680000e-142 514.0
33 TraesCS7B01G436400 chr4A 86.731 309 27 9 1663 1964 603534322 603534021 6.140000e-87 331.0
34 TraesCS7B01G436400 chr4A 81.319 273 27 10 664 927 603535534 603535277 1.810000e-47 200.0
35 TraesCS7B01G436400 chr6D 83.251 406 61 6 1001 1401 67569268 67569671 1.680000e-97 366.0
36 TraesCS7B01G436400 chr6B 82.963 405 64 4 1001 1401 142612543 142612946 7.830000e-96 361.0
37 TraesCS7B01G436400 chr6A 82.716 405 65 5 1001 1401 85261741 85262144 3.640000e-94 355.0
38 TraesCS7B01G436400 chr2B 89.513 267 27 1 376 641 727087769 727087503 1.320000e-88 337.0
39 TraesCS7B01G436400 chr2B 100.000 29 0 0 2537 2565 666399681 666399709 1.000000e-03 54.7
40 TraesCS7B01G436400 chr2B 100.000 29 0 0 2537 2565 666424902 666424930 1.000000e-03 54.7
41 TraesCS7B01G436400 chr2A 88.346 266 30 1 377 641 732602176 732601911 4.780000e-83 318.0
42 TraesCS7B01G436400 chr2A 89.080 174 19 0 470 643 736553466 736553293 1.790000e-52 217.0
43 TraesCS7B01G436400 chr2A 100.000 30 0 0 2537 2566 698177319 698177348 4.140000e-04 56.5
44 TraesCS7B01G436400 chr3B 71.975 314 63 17 2669 2972 684135978 684135680 5.320000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G436400 chr7B 702534218 702537189 2971 False 5489.000000 5489 100.000000 1 2972 1 chr7B.!!$F2 2971
1 TraesCS7B01G436400 chr7B 702851517 702855020 3503 True 762.500000 1914 92.681250 650 2972 4 chr7B.!!$R3 2322
2 TraesCS7B01G436400 chr7B 702821712 702825519 3807 True 558.750000 671 92.167250 652 2972 4 chr7B.!!$R2 2320
3 TraesCS7B01G436400 chr7B 702509897 702510505 608 False 253.000000 363 91.838000 2529 2972 2 chr7B.!!$F4 443
4 TraesCS7B01G436400 chr7A 704387401 704388950 1549 False 916.000000 1698 90.587500 894 2216 2 chr7A.!!$F3 1322
5 TraesCS7B01G436400 chr7D 612975402 612978874 3472 False 615.375000 1506 90.936250 651 2438 4 chr7D.!!$F3 1787
6 TraesCS7B01G436400 chr4B 639448 641639 2191 True 351.125000 773 87.838250 709 2224 4 chr4B.!!$R1 1515
7 TraesCS7B01G436400 chr4D 1238708 1240488 1780 False 421.333333 632 89.518667 667 1964 3 chr4D.!!$F1 1297
8 TraesCS7B01G436400 chr4A 603534021 603535534 1513 True 348.333333 514 84.938333 664 1964 3 chr4A.!!$R1 1300

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.036010 ACAAGATGGAGGAAGGCACG 60.036 55.0 0.00 0.0 0.0 5.34 F
548 549 0.037326 GGTGTGTTGCGAGATCTGGA 60.037 55.0 9.17 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1334 4074 0.676151 CTTCAGCTTCAGGTCCCTGC 60.676 60.0 8.53 0.0 43.31 4.85 R
2481 6788 0.405198 ATGACAGTTGCCATGTCCCA 59.595 50.0 9.69 0.0 45.24 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 139 8.994429 AATTTGCGGACATTTTATCAAATACA 57.006 26.923 0.00 0.00 34.31 2.29
139 140 9.598517 AATTTGCGGACATTTTATCAAATACAT 57.401 25.926 0.00 0.00 34.31 2.29
140 141 7.984002 TTGCGGACATTTTATCAAATACATG 57.016 32.000 0.00 0.00 30.90 3.21
141 142 7.326968 TGCGGACATTTTATCAAATACATGA 57.673 32.000 0.00 0.00 30.90 3.07
142 143 7.766283 TGCGGACATTTTATCAAATACATGAA 58.234 30.769 0.00 0.00 30.90 2.57
143 144 7.914871 TGCGGACATTTTATCAAATACATGAAG 59.085 33.333 0.00 0.00 30.90 3.02
144 145 7.096477 GCGGACATTTTATCAAATACATGAAGC 60.096 37.037 0.00 0.00 30.90 3.86
145 146 8.131100 CGGACATTTTATCAAATACATGAAGCT 58.869 33.333 0.00 0.00 30.90 3.74
146 147 9.807649 GGACATTTTATCAAATACATGAAGCTT 57.192 29.630 0.00 0.00 30.90 3.74
160 161 9.899226 ATACATGAAGCTTTTCTTTTAGTTCAC 57.101 29.630 0.00 0.00 34.56 3.18
161 162 7.771183 ACATGAAGCTTTTCTTTTAGTTCACA 58.229 30.769 0.00 0.00 34.56 3.58
162 163 8.250332 ACATGAAGCTTTTCTTTTAGTTCACAA 58.750 29.630 0.00 0.00 34.56 3.33
163 164 9.252962 CATGAAGCTTTTCTTTTAGTTCACAAT 57.747 29.630 0.00 0.00 34.56 2.71
164 165 9.822185 ATGAAGCTTTTCTTTTAGTTCACAATT 57.178 25.926 0.00 0.00 34.56 2.32
165 166 9.651913 TGAAGCTTTTCTTTTAGTTCACAATTT 57.348 25.926 0.00 0.00 34.56 1.82
318 319 8.681486 TCATGAATATTTGTACAAGATGGAGG 57.319 34.615 8.56 0.39 0.00 4.30
319 320 8.493607 TCATGAATATTTGTACAAGATGGAGGA 58.506 33.333 8.56 2.45 0.00 3.71
320 321 9.123902 CATGAATATTTGTACAAGATGGAGGAA 57.876 33.333 8.56 0.00 0.00 3.36
321 322 8.737168 TGAATATTTGTACAAGATGGAGGAAG 57.263 34.615 8.56 0.00 0.00 3.46
322 323 7.775093 TGAATATTTGTACAAGATGGAGGAAGG 59.225 37.037 8.56 0.00 0.00 3.46
323 324 3.350219 TTGTACAAGATGGAGGAAGGC 57.650 47.619 3.59 0.00 0.00 4.35
324 325 2.265367 TGTACAAGATGGAGGAAGGCA 58.735 47.619 0.00 0.00 0.00 4.75
325 326 2.027192 TGTACAAGATGGAGGAAGGCAC 60.027 50.000 0.00 0.00 0.00 5.01
326 327 0.036010 ACAAGATGGAGGAAGGCACG 60.036 55.000 0.00 0.00 0.00 5.34
327 328 0.745845 CAAGATGGAGGAAGGCACGG 60.746 60.000 0.00 0.00 0.00 4.94
328 329 0.909610 AAGATGGAGGAAGGCACGGA 60.910 55.000 0.00 0.00 0.00 4.69
329 330 1.144936 GATGGAGGAAGGCACGGAG 59.855 63.158 0.00 0.00 0.00 4.63
330 331 2.317149 GATGGAGGAAGGCACGGAGG 62.317 65.000 0.00 0.00 0.00 4.30
331 332 3.003763 GGAGGAAGGCACGGAGGT 61.004 66.667 0.00 0.00 0.00 3.85
332 333 2.593956 GGAGGAAGGCACGGAGGTT 61.594 63.158 0.00 0.00 0.00 3.50
333 334 1.376037 GAGGAAGGCACGGAGGTTG 60.376 63.158 0.00 0.00 0.00 3.77
334 335 3.056328 GGAAGGCACGGAGGTTGC 61.056 66.667 0.00 0.00 0.00 4.17
339 340 4.740822 GCACGGAGGTTGCCCCAT 62.741 66.667 0.00 0.00 34.66 4.00
340 341 2.751436 CACGGAGGTTGCCCCATG 60.751 66.667 0.00 0.00 34.66 3.66
341 342 4.047125 ACGGAGGTTGCCCCATGG 62.047 66.667 4.14 4.14 34.66 3.66
343 344 3.672503 GGAGGTTGCCCCATGGGT 61.673 66.667 29.33 9.78 46.51 4.51
344 345 2.445155 GAGGTTGCCCCATGGGTT 59.555 61.111 29.33 7.40 46.51 4.11
345 346 1.682344 GAGGTTGCCCCATGGGTTC 60.682 63.158 29.33 20.05 46.51 3.62
346 347 2.119391 GGTTGCCCCATGGGTTCA 59.881 61.111 29.33 22.36 46.51 3.18
347 348 1.984026 GGTTGCCCCATGGGTTCAG 60.984 63.158 29.33 14.98 46.51 3.02
348 349 1.228862 GTTGCCCCATGGGTTCAGT 60.229 57.895 29.33 0.00 46.51 3.41
349 350 0.831711 GTTGCCCCATGGGTTCAGTT 60.832 55.000 29.33 0.00 46.51 3.16
350 351 0.541764 TTGCCCCATGGGTTCAGTTC 60.542 55.000 29.33 9.38 46.51 3.01
351 352 1.076549 GCCCCATGGGTTCAGTTCA 59.923 57.895 29.33 0.00 46.51 3.18
352 353 0.541764 GCCCCATGGGTTCAGTTCAA 60.542 55.000 29.33 0.00 46.51 2.69
353 354 1.549203 CCCCATGGGTTCAGTTCAAG 58.451 55.000 29.33 5.98 38.25 3.02
354 355 1.203050 CCCCATGGGTTCAGTTCAAGT 60.203 52.381 29.33 0.00 38.25 3.16
355 356 1.888512 CCCATGGGTTCAGTTCAAGTG 59.111 52.381 23.93 0.00 0.00 3.16
356 357 2.488891 CCCATGGGTTCAGTTCAAGTGA 60.489 50.000 23.93 0.00 0.00 3.41
357 358 3.221771 CCATGGGTTCAGTTCAAGTGAA 58.778 45.455 2.85 3.33 35.34 3.18
358 359 3.828451 CCATGGGTTCAGTTCAAGTGAAT 59.172 43.478 10.90 0.00 39.47 2.57
359 360 5.009631 CCATGGGTTCAGTTCAAGTGAATA 58.990 41.667 10.90 2.12 39.47 1.75
360 361 5.653769 CCATGGGTTCAGTTCAAGTGAATAT 59.346 40.000 10.90 4.21 39.47 1.28
361 362 6.153340 CCATGGGTTCAGTTCAAGTGAATATT 59.847 38.462 10.90 0.00 39.47 1.28
362 363 7.309990 CCATGGGTTCAGTTCAAGTGAATATTT 60.310 37.037 10.90 0.00 39.47 1.40
363 364 7.214467 TGGGTTCAGTTCAAGTGAATATTTC 57.786 36.000 10.90 0.00 39.47 2.17
364 365 6.208599 TGGGTTCAGTTCAAGTGAATATTTCC 59.791 38.462 10.90 6.93 39.47 3.13
365 366 6.208599 GGGTTCAGTTCAAGTGAATATTTCCA 59.791 38.462 10.90 0.00 39.47 3.53
366 367 7.308435 GGTTCAGTTCAAGTGAATATTTCCAG 58.692 38.462 10.90 0.00 39.47 3.86
367 368 7.174946 GGTTCAGTTCAAGTGAATATTTCCAGA 59.825 37.037 10.90 0.00 39.47 3.86
368 369 8.734386 GTTCAGTTCAAGTGAATATTTCCAGAT 58.266 33.333 10.90 0.00 39.47 2.90
369 370 9.958180 TTCAGTTCAAGTGAATATTTCCAGATA 57.042 29.630 3.33 0.00 32.96 1.98
395 396 7.698163 ATATAGGGAATGATTAGGATCACCC 57.302 40.000 6.87 6.87 44.64 4.61
396 397 2.639839 AGGGAATGATTAGGATCACCCG 59.360 50.000 8.56 0.00 46.18 5.28
397 398 2.637872 GGGAATGATTAGGATCACCCGA 59.362 50.000 0.00 0.00 44.64 5.14
398 399 3.557264 GGGAATGATTAGGATCACCCGAC 60.557 52.174 0.00 0.00 44.64 4.79
399 400 3.318017 GAATGATTAGGATCACCCGACG 58.682 50.000 0.00 0.00 44.64 5.12
400 401 2.061509 TGATTAGGATCACCCGACGA 57.938 50.000 0.00 0.00 37.37 4.20
401 402 2.380941 TGATTAGGATCACCCGACGAA 58.619 47.619 0.00 0.00 37.37 3.85
402 403 2.963101 TGATTAGGATCACCCGACGAAT 59.037 45.455 0.00 0.00 37.37 3.34
403 404 4.146564 TGATTAGGATCACCCGACGAATA 58.853 43.478 0.00 0.00 37.37 1.75
404 405 4.585581 TGATTAGGATCACCCGACGAATAA 59.414 41.667 0.00 0.00 37.37 1.40
405 406 2.884894 AGGATCACCCGACGAATAAC 57.115 50.000 0.00 0.00 40.87 1.89
406 407 2.104967 AGGATCACCCGACGAATAACA 58.895 47.619 0.00 0.00 40.87 2.41
407 408 2.498481 AGGATCACCCGACGAATAACAA 59.502 45.455 0.00 0.00 40.87 2.83
408 409 3.134081 AGGATCACCCGACGAATAACAAT 59.866 43.478 0.00 0.00 40.87 2.71
409 410 3.247648 GGATCACCCGACGAATAACAATG 59.752 47.826 0.00 0.00 0.00 2.82
410 411 3.322211 TCACCCGACGAATAACAATGT 57.678 42.857 0.00 0.00 0.00 2.71
411 412 2.997303 TCACCCGACGAATAACAATGTG 59.003 45.455 0.00 0.00 0.00 3.21
412 413 2.739913 CACCCGACGAATAACAATGTGT 59.260 45.455 0.00 0.00 0.00 3.72
413 414 2.739913 ACCCGACGAATAACAATGTGTG 59.260 45.455 0.00 0.00 0.00 3.82
414 415 2.475519 CCCGACGAATAACAATGTGTGC 60.476 50.000 0.00 0.00 0.00 4.57
415 416 2.417780 CGACGAATAACAATGTGTGCG 58.582 47.619 0.00 0.00 0.00 5.34
416 417 2.159894 CGACGAATAACAATGTGTGCGT 60.160 45.455 4.97 4.97 31.18 5.24
417 418 3.404564 GACGAATAACAATGTGTGCGTC 58.595 45.455 14.07 14.07 35.81 5.19
418 419 2.158841 ACGAATAACAATGTGTGCGTCC 59.841 45.455 0.00 0.00 0.00 4.79
419 420 2.769376 GAATAACAATGTGTGCGTCCG 58.231 47.619 0.00 0.00 0.00 4.79
420 421 0.446222 ATAACAATGTGTGCGTCCGC 59.554 50.000 4.42 4.42 42.35 5.54
421 422 1.570347 TAACAATGTGTGCGTCCGCC 61.570 55.000 9.43 1.39 41.09 6.13
422 423 4.444024 CAATGTGTGCGTCCGCCG 62.444 66.667 9.43 0.00 41.09 6.46
442 443 3.658398 CAACCTGGCTGTTGGATCT 57.342 52.632 11.17 0.00 41.49 2.75
443 444 1.171308 CAACCTGGCTGTTGGATCTG 58.829 55.000 11.17 0.00 41.49 2.90
444 445 1.067295 AACCTGGCTGTTGGATCTGA 58.933 50.000 0.00 0.00 0.00 3.27
445 446 1.293062 ACCTGGCTGTTGGATCTGAT 58.707 50.000 0.00 0.00 0.00 2.90
446 447 1.637553 ACCTGGCTGTTGGATCTGATT 59.362 47.619 0.00 0.00 0.00 2.57
447 448 2.042162 ACCTGGCTGTTGGATCTGATTT 59.958 45.455 0.00 0.00 0.00 2.17
448 449 3.266772 ACCTGGCTGTTGGATCTGATTTA 59.733 43.478 0.00 0.00 0.00 1.40
449 450 4.263905 ACCTGGCTGTTGGATCTGATTTAA 60.264 41.667 0.00 0.00 0.00 1.52
450 451 4.891756 CCTGGCTGTTGGATCTGATTTAAT 59.108 41.667 0.00 0.00 0.00 1.40
451 452 5.009410 CCTGGCTGTTGGATCTGATTTAATC 59.991 44.000 0.00 0.00 0.00 1.75
452 453 5.508567 TGGCTGTTGGATCTGATTTAATCA 58.491 37.500 7.46 7.46 37.76 2.57
468 469 9.547753 TGATTTAATCAGATAGTTAGGAGCAAC 57.452 33.333 3.20 0.00 33.59 4.17
469 470 8.594881 ATTTAATCAGATAGTTAGGAGCAACG 57.405 34.615 0.00 0.00 33.50 4.10
470 471 5.599999 AATCAGATAGTTAGGAGCAACGT 57.400 39.130 0.00 0.00 33.50 3.99
471 472 6.710597 AATCAGATAGTTAGGAGCAACGTA 57.289 37.500 0.00 0.00 33.50 3.57
472 473 6.902771 ATCAGATAGTTAGGAGCAACGTAT 57.097 37.500 0.00 0.00 33.50 3.06
473 474 6.710597 TCAGATAGTTAGGAGCAACGTATT 57.289 37.500 0.00 0.00 33.50 1.89
474 475 7.812690 TCAGATAGTTAGGAGCAACGTATTA 57.187 36.000 0.00 0.00 33.50 0.98
475 476 7.646314 TCAGATAGTTAGGAGCAACGTATTAC 58.354 38.462 0.00 0.00 33.50 1.89
476 477 7.501559 TCAGATAGTTAGGAGCAACGTATTACT 59.498 37.037 0.00 0.00 33.50 2.24
477 478 8.781196 CAGATAGTTAGGAGCAACGTATTACTA 58.219 37.037 0.00 0.00 33.50 1.82
478 479 9.001542 AGATAGTTAGGAGCAACGTATTACTAG 57.998 37.037 0.00 0.00 33.50 2.57
479 480 8.915057 ATAGTTAGGAGCAACGTATTACTAGA 57.085 34.615 0.00 0.00 33.50 2.43
480 481 7.025485 AGTTAGGAGCAACGTATTACTAGAC 57.975 40.000 0.00 0.00 33.50 2.59
481 482 6.827762 AGTTAGGAGCAACGTATTACTAGACT 59.172 38.462 0.00 0.00 33.50 3.24
482 483 7.989741 AGTTAGGAGCAACGTATTACTAGACTA 59.010 37.037 0.00 0.00 33.50 2.59
483 484 8.616076 GTTAGGAGCAACGTATTACTAGACTAA 58.384 37.037 0.00 0.00 0.00 2.24
484 485 7.261829 AGGAGCAACGTATTACTAGACTAAG 57.738 40.000 0.00 0.00 0.00 2.18
485 486 6.827762 AGGAGCAACGTATTACTAGACTAAGT 59.172 38.462 0.00 0.00 0.00 2.24
486 487 7.338957 AGGAGCAACGTATTACTAGACTAAGTT 59.661 37.037 0.00 0.00 0.00 2.66
487 488 7.972832 GGAGCAACGTATTACTAGACTAAGTTT 59.027 37.037 0.00 0.00 0.00 2.66
488 489 9.351570 GAGCAACGTATTACTAGACTAAGTTTT 57.648 33.333 0.00 0.00 0.00 2.43
489 490 9.136952 AGCAACGTATTACTAGACTAAGTTTTG 57.863 33.333 0.00 0.00 0.00 2.44
490 491 8.378421 GCAACGTATTACTAGACTAAGTTTTGG 58.622 37.037 0.00 0.00 0.00 3.28
491 492 9.630098 CAACGTATTACTAGACTAAGTTTTGGA 57.370 33.333 0.00 0.00 0.00 3.53
493 494 9.631452 ACGTATTACTAGACTAAGTTTTGGAAC 57.369 33.333 0.00 0.00 35.97 3.62
507 508 7.302350 AGTTTTGGAACTTAATTGTTGTTGC 57.698 32.000 0.00 0.00 43.48 4.17
508 509 6.876257 AGTTTTGGAACTTAATTGTTGTTGCA 59.124 30.769 9.04 9.04 43.48 4.08
509 510 7.389053 AGTTTTGGAACTTAATTGTTGTTGCAA 59.611 29.630 16.49 16.49 43.48 4.08
510 511 7.856145 TTTGGAACTTAATTGTTGTTGCAAT 57.144 28.000 19.06 0.00 45.90 3.56
511 512 7.475771 TTGGAACTTAATTGTTGTTGCAATC 57.524 32.000 16.49 0.00 43.38 2.67
512 513 6.815089 TGGAACTTAATTGTTGTTGCAATCT 58.185 32.000 0.59 0.00 38.65 2.40
513 514 7.271511 TGGAACTTAATTGTTGTTGCAATCTT 58.728 30.769 0.59 0.00 38.65 2.40
514 515 7.437862 TGGAACTTAATTGTTGTTGCAATCTTC 59.562 33.333 0.59 0.00 38.65 2.87
515 516 7.095649 GGAACTTAATTGTTGTTGCAATCTTCC 60.096 37.037 0.59 1.37 38.03 3.46
516 517 6.223120 ACTTAATTGTTGTTGCAATCTTCCC 58.777 36.000 0.59 0.00 38.03 3.97
517 518 4.686191 AATTGTTGTTGCAATCTTCCCA 57.314 36.364 0.59 0.00 38.03 4.37
518 519 3.451141 TTGTTGTTGCAATCTTCCCAC 57.549 42.857 0.59 0.00 0.00 4.61
519 520 2.665165 TGTTGTTGCAATCTTCCCACT 58.335 42.857 0.59 0.00 0.00 4.00
520 521 2.361757 TGTTGTTGCAATCTTCCCACTG 59.638 45.455 0.59 0.00 0.00 3.66
521 522 0.961019 TGTTGCAATCTTCCCACTGC 59.039 50.000 0.59 0.00 35.32 4.40
522 523 0.961019 GTTGCAATCTTCCCACTGCA 59.039 50.000 0.59 0.00 42.79 4.41
523 524 3.435846 TGCAATCTTCCCACTGCAA 57.564 47.368 0.00 0.00 41.61 4.08
524 525 0.961019 TGCAATCTTCCCACTGCAAC 59.039 50.000 0.00 0.00 41.61 4.17
525 526 0.961019 GCAATCTTCCCACTGCAACA 59.039 50.000 0.00 0.00 34.87 3.33
526 527 1.340889 GCAATCTTCCCACTGCAACAA 59.659 47.619 0.00 0.00 34.87 2.83
527 528 2.028748 GCAATCTTCCCACTGCAACAAT 60.029 45.455 0.00 0.00 34.87 2.71
528 529 3.555586 GCAATCTTCCCACTGCAACAATT 60.556 43.478 0.00 0.00 34.87 2.32
529 530 3.947910 ATCTTCCCACTGCAACAATTG 57.052 42.857 3.24 3.24 0.00 2.32
530 531 1.962807 TCTTCCCACTGCAACAATTGG 59.037 47.619 10.83 0.00 0.00 3.16
531 532 1.688197 CTTCCCACTGCAACAATTGGT 59.312 47.619 10.83 0.00 0.00 3.67
532 533 1.039068 TCCCACTGCAACAATTGGTG 58.961 50.000 19.47 19.47 35.41 4.17
533 534 0.752054 CCCACTGCAACAATTGGTGT 59.248 50.000 23.90 2.11 44.64 4.16
534 535 1.538634 CCCACTGCAACAATTGGTGTG 60.539 52.381 23.90 18.46 40.60 3.82
535 536 1.136695 CCACTGCAACAATTGGTGTGT 59.863 47.619 23.90 19.06 40.60 3.72
536 537 2.418471 CCACTGCAACAATTGGTGTGTT 60.418 45.455 23.90 6.22 40.60 3.32
540 541 2.200792 CAACAATTGGTGTGTTGCGA 57.799 45.000 15.63 0.00 46.63 5.10
541 542 2.118683 CAACAATTGGTGTGTTGCGAG 58.881 47.619 15.63 0.00 46.63 5.03
542 543 1.674359 ACAATTGGTGTGTTGCGAGA 58.326 45.000 10.83 0.00 39.72 4.04
543 544 2.229792 ACAATTGGTGTGTTGCGAGAT 58.770 42.857 10.83 0.00 39.72 2.75
544 545 2.226437 ACAATTGGTGTGTTGCGAGATC 59.774 45.455 10.83 0.00 39.72 2.75
545 546 2.479566 ATTGGTGTGTTGCGAGATCT 57.520 45.000 0.00 0.00 0.00 2.75
546 547 1.511850 TTGGTGTGTTGCGAGATCTG 58.488 50.000 0.00 0.00 0.00 2.90
547 548 0.320683 TGGTGTGTTGCGAGATCTGG 60.321 55.000 0.00 0.00 0.00 3.86
548 549 0.037326 GGTGTGTTGCGAGATCTGGA 60.037 55.000 9.17 0.00 0.00 3.86
549 550 1.071605 GTGTGTTGCGAGATCTGGAC 58.928 55.000 9.17 0.00 0.00 4.02
550 551 0.037326 TGTGTTGCGAGATCTGGACC 60.037 55.000 9.17 0.00 0.00 4.46
551 552 0.741221 GTGTTGCGAGATCTGGACCC 60.741 60.000 9.17 0.00 0.00 4.46
552 553 1.519455 GTTGCGAGATCTGGACCCG 60.519 63.158 9.17 2.53 0.00 5.28
553 554 2.721167 TTGCGAGATCTGGACCCGG 61.721 63.158 9.17 0.00 0.00 5.73
554 555 2.833582 GCGAGATCTGGACCCGGA 60.834 66.667 9.17 0.00 35.60 5.14
555 556 2.203771 GCGAGATCTGGACCCGGAT 61.204 63.158 9.17 10.01 44.02 4.18
556 557 1.749334 GCGAGATCTGGACCCGGATT 61.749 60.000 9.17 2.82 41.66 3.01
557 558 0.315568 CGAGATCTGGACCCGGATTC 59.684 60.000 0.73 0.00 41.66 2.52
558 559 0.682292 GAGATCTGGACCCGGATTCC 59.318 60.000 0.73 9.35 41.66 3.01
559 560 0.266152 AGATCTGGACCCGGATTCCT 59.734 55.000 19.56 3.08 41.66 3.36
560 561 1.132500 GATCTGGACCCGGATTCCTT 58.868 55.000 19.56 7.68 41.66 3.36
561 562 1.490910 GATCTGGACCCGGATTCCTTT 59.509 52.381 19.56 7.40 41.66 3.11
562 563 0.618458 TCTGGACCCGGATTCCTTTG 59.382 55.000 19.56 11.59 33.84 2.77
563 564 0.618458 CTGGACCCGGATTCCTTTGA 59.382 55.000 19.56 2.59 33.84 2.69
564 565 0.618458 TGGACCCGGATTCCTTTGAG 59.382 55.000 19.56 0.00 33.84 3.02
565 566 0.618981 GGACCCGGATTCCTTTGAGT 59.381 55.000 0.73 0.00 0.00 3.41
566 567 1.679032 GGACCCGGATTCCTTTGAGTG 60.679 57.143 0.73 0.00 0.00 3.51
567 568 0.322546 ACCCGGATTCCTTTGAGTGC 60.323 55.000 0.73 0.00 0.00 4.40
568 569 1.369091 CCCGGATTCCTTTGAGTGCG 61.369 60.000 0.73 0.00 40.82 5.34
569 570 1.425428 CGGATTCCTTTGAGTGCGC 59.575 57.895 0.00 0.00 35.50 6.09
570 571 1.021390 CGGATTCCTTTGAGTGCGCT 61.021 55.000 9.73 0.00 35.50 5.92
571 572 0.729690 GGATTCCTTTGAGTGCGCTC 59.270 55.000 20.51 20.51 41.97 5.03
572 573 0.371645 GATTCCTTTGAGTGCGCTCG 59.628 55.000 21.66 8.08 44.48 5.03
573 574 0.320771 ATTCCTTTGAGTGCGCTCGT 60.321 50.000 21.66 0.00 44.48 4.18
574 575 0.944311 TTCCTTTGAGTGCGCTCGTC 60.944 55.000 21.66 2.84 44.48 4.20
575 576 1.664649 CCTTTGAGTGCGCTCGTCA 60.665 57.895 21.66 5.84 44.48 4.35
576 577 1.488957 CTTTGAGTGCGCTCGTCAC 59.511 57.895 21.66 0.00 44.48 3.67
577 578 1.891060 CTTTGAGTGCGCTCGTCACC 61.891 60.000 21.66 0.00 44.48 4.02
578 579 2.363711 TTTGAGTGCGCTCGTCACCT 62.364 55.000 21.66 0.00 44.48 4.00
579 580 2.807045 GAGTGCGCTCGTCACCTG 60.807 66.667 12.26 0.00 35.14 4.00
580 581 3.559657 GAGTGCGCTCGTCACCTGT 62.560 63.158 12.26 0.00 35.14 4.00
581 582 3.406361 GTGCGCTCGTCACCTGTG 61.406 66.667 9.73 0.00 0.00 3.66
584 585 2.807045 CGCTCGTCACCTGTGCTC 60.807 66.667 0.00 0.00 0.00 4.26
585 586 2.433318 GCTCGTCACCTGTGCTCC 60.433 66.667 0.00 0.00 0.00 4.70
586 587 2.936912 GCTCGTCACCTGTGCTCCT 61.937 63.158 0.00 0.00 0.00 3.69
587 588 1.214062 CTCGTCACCTGTGCTCCTC 59.786 63.158 0.00 0.00 0.00 3.71
588 589 2.219325 CTCGTCACCTGTGCTCCTCC 62.219 65.000 0.00 0.00 0.00 4.30
589 590 2.665603 GTCACCTGTGCTCCTCCC 59.334 66.667 0.00 0.00 0.00 4.30
590 591 2.997315 TCACCTGTGCTCCTCCCG 60.997 66.667 0.00 0.00 0.00 5.14
591 592 2.997315 CACCTGTGCTCCTCCCGA 60.997 66.667 0.00 0.00 0.00 5.14
592 593 2.681778 ACCTGTGCTCCTCCCGAG 60.682 66.667 0.00 0.00 42.04 4.63
600 601 2.281830 CTCCTCCCGAGCTCTTTGT 58.718 57.895 12.85 0.00 0.00 2.83
601 602 0.174617 CTCCTCCCGAGCTCTTTGTC 59.825 60.000 12.85 0.00 0.00 3.18
602 603 0.541998 TCCTCCCGAGCTCTTTGTCA 60.542 55.000 12.85 0.00 0.00 3.58
603 604 0.321671 CCTCCCGAGCTCTTTGTCAA 59.678 55.000 12.85 0.00 0.00 3.18
604 605 1.674221 CCTCCCGAGCTCTTTGTCAAG 60.674 57.143 12.85 0.00 0.00 3.02
605 606 0.320771 TCCCGAGCTCTTTGTCAAGC 60.321 55.000 12.85 0.00 38.84 4.01
606 607 1.301677 CCCGAGCTCTTTGTCAAGCC 61.302 60.000 12.85 0.00 39.39 4.35
607 608 1.301677 CCGAGCTCTTTGTCAAGCCC 61.302 60.000 12.85 0.00 39.39 5.19
608 609 0.603707 CGAGCTCTTTGTCAAGCCCA 60.604 55.000 12.85 0.00 39.39 5.36
609 610 0.877743 GAGCTCTTTGTCAAGCCCAC 59.122 55.000 6.43 0.00 39.39 4.61
610 611 0.183492 AGCTCTTTGTCAAGCCCACA 59.817 50.000 0.00 0.00 39.39 4.17
611 612 0.312102 GCTCTTTGTCAAGCCCACAC 59.688 55.000 0.00 0.00 32.22 3.82
612 613 0.954452 CTCTTTGTCAAGCCCACACC 59.046 55.000 0.00 0.00 0.00 4.16
613 614 0.550914 TCTTTGTCAAGCCCACACCT 59.449 50.000 0.00 0.00 0.00 4.00
614 615 0.954452 CTTTGTCAAGCCCACACCTC 59.046 55.000 0.00 0.00 0.00 3.85
615 616 0.467290 TTTGTCAAGCCCACACCTCC 60.467 55.000 0.00 0.00 0.00 4.30
616 617 1.352622 TTGTCAAGCCCACACCTCCT 61.353 55.000 0.00 0.00 0.00 3.69
617 618 1.003233 GTCAAGCCCACACCTCCTC 60.003 63.158 0.00 0.00 0.00 3.71
618 619 1.461268 TCAAGCCCACACCTCCTCA 60.461 57.895 0.00 0.00 0.00 3.86
619 620 1.302832 CAAGCCCACACCTCCTCAC 60.303 63.158 0.00 0.00 0.00 3.51
620 621 2.883828 AAGCCCACACCTCCTCACG 61.884 63.158 0.00 0.00 0.00 4.35
622 623 3.314331 CCCACACCTCCTCACGCT 61.314 66.667 0.00 0.00 0.00 5.07
623 624 2.047844 CCACACCTCCTCACGCTG 60.048 66.667 0.00 0.00 0.00 5.18
624 625 2.740055 CACACCTCCTCACGCTGC 60.740 66.667 0.00 0.00 0.00 5.25
625 626 2.919856 ACACCTCCTCACGCTGCT 60.920 61.111 0.00 0.00 0.00 4.24
626 627 2.125753 CACCTCCTCACGCTGCTC 60.126 66.667 0.00 0.00 0.00 4.26
627 628 3.386237 ACCTCCTCACGCTGCTCC 61.386 66.667 0.00 0.00 0.00 4.70
628 629 4.504916 CCTCCTCACGCTGCTCCG 62.505 72.222 0.00 0.00 0.00 4.63
629 630 3.443925 CTCCTCACGCTGCTCCGA 61.444 66.667 0.00 0.00 0.00 4.55
630 631 3.691744 CTCCTCACGCTGCTCCGAC 62.692 68.421 0.00 0.00 0.00 4.79
631 632 4.803426 CCTCACGCTGCTCCGACC 62.803 72.222 0.00 0.00 0.00 4.79
632 633 4.056125 CTCACGCTGCTCCGACCA 62.056 66.667 0.00 0.00 0.00 4.02
633 634 3.362399 CTCACGCTGCTCCGACCAT 62.362 63.158 0.00 0.00 0.00 3.55
634 635 2.887568 CACGCTGCTCCGACCATC 60.888 66.667 0.00 0.00 0.00 3.51
635 636 4.498520 ACGCTGCTCCGACCATCG 62.499 66.667 0.00 0.00 40.07 3.84
638 639 4.147449 CTGCTCCGACCATCGCCA 62.147 66.667 0.00 0.00 38.82 5.69
639 640 4.451150 TGCTCCGACCATCGCCAC 62.451 66.667 0.00 0.00 38.82 5.01
641 642 4.873129 CTCCGACCATCGCCACCG 62.873 72.222 0.00 0.00 38.82 4.94
652 653 3.324108 GCCACCGACCCTACCCAA 61.324 66.667 0.00 0.00 0.00 4.12
653 654 2.676265 GCCACCGACCCTACCCAAT 61.676 63.158 0.00 0.00 0.00 3.16
654 655 1.996086 CCACCGACCCTACCCAATT 59.004 57.895 0.00 0.00 0.00 2.32
655 656 0.107361 CCACCGACCCTACCCAATTC 60.107 60.000 0.00 0.00 0.00 2.17
656 657 0.107361 CACCGACCCTACCCAATTCC 60.107 60.000 0.00 0.00 0.00 3.01
657 658 1.145377 CCGACCCTACCCAATTCCG 59.855 63.158 0.00 0.00 0.00 4.30
658 659 1.523032 CGACCCTACCCAATTCCGC 60.523 63.158 0.00 0.00 0.00 5.54
659 660 1.523032 GACCCTACCCAATTCCGCG 60.523 63.158 0.00 0.00 0.00 6.46
660 661 2.248086 GACCCTACCCAATTCCGCGT 62.248 60.000 4.92 0.00 0.00 6.01
661 662 1.523032 CCCTACCCAATTCCGCGTC 60.523 63.158 4.92 0.00 0.00 5.19
662 663 1.523032 CCTACCCAATTCCGCGTCC 60.523 63.158 4.92 0.00 0.00 4.79
788 2195 4.049393 GAGGATCCAAATCGGGCG 57.951 61.111 15.82 0.00 34.36 6.13
799 2206 0.180406 AATCGGGCGGCTACTCATTT 59.820 50.000 9.56 0.00 0.00 2.32
835 2245 8.918202 TTAATTTATGTATGGCACCTCCTAAG 57.082 34.615 0.00 0.00 35.26 2.18
858 2424 1.753073 GATCTTGTGCAATCCCTTGGG 59.247 52.381 0.00 0.00 32.72 4.12
916 2501 2.611292 GAGATAGGATGCGCCAATATGC 59.389 50.000 4.18 0.00 40.02 3.14
922 2509 1.270274 GATGCGCCAATATGCCATGAA 59.730 47.619 4.18 0.00 0.00 2.57
927 2514 2.477375 CGCCAATATGCCATGAAAATGC 59.523 45.455 0.00 0.00 0.00 3.56
938 2529 7.521871 TGCCATGAAAATGCATACATATACA 57.478 32.000 0.00 3.53 34.62 2.29
1428 4183 0.926846 CGACGAGGTACTACGAGTCC 59.073 60.000 16.09 0.00 41.55 3.85
1429 4184 1.737029 CGACGAGGTACTACGAGTCCA 60.737 57.143 16.09 0.00 41.55 4.02
1430 4185 2.350522 GACGAGGTACTACGAGTCCAA 58.649 52.381 16.09 0.00 41.55 3.53
1431 4186 2.079925 ACGAGGTACTACGAGTCCAAC 58.920 52.381 16.09 0.00 41.55 3.77
1432 4187 1.399791 CGAGGTACTACGAGTCCAACC 59.600 57.143 6.43 0.00 41.55 3.77
1433 4188 1.747924 GAGGTACTACGAGTCCAACCC 59.252 57.143 0.00 0.00 41.55 4.11
1434 4189 1.357079 AGGTACTACGAGTCCAACCCT 59.643 52.381 0.00 0.00 36.02 4.34
1435 4190 2.578021 AGGTACTACGAGTCCAACCCTA 59.422 50.000 0.00 0.00 36.02 3.53
1436 4191 2.685388 GGTACTACGAGTCCAACCCTAC 59.315 54.545 0.00 0.00 0.00 3.18
1437 4192 1.457346 ACTACGAGTCCAACCCTACG 58.543 55.000 0.00 0.00 0.00 3.51
1438 4193 0.737219 CTACGAGTCCAACCCTACGG 59.263 60.000 0.00 0.00 0.00 4.02
1439 4194 1.315257 TACGAGTCCAACCCTACGGC 61.315 60.000 0.00 0.00 0.00 5.68
1446 4201 1.991167 CAACCCTACGGCCTACCCA 60.991 63.158 0.00 0.00 0.00 4.51
1516 4271 1.051812 CTCCTCCCGTGATGCCTATT 58.948 55.000 0.00 0.00 0.00 1.73
1582 4337 3.812019 CTGGAGGCTACGACGCGT 61.812 66.667 13.85 13.85 44.35 6.01
1583 4338 2.436469 TGGAGGCTACGACGCGTA 60.436 61.111 13.97 10.75 41.54 4.42
1584 4339 2.023882 GGAGGCTACGACGCGTAC 59.976 66.667 13.97 5.03 41.54 3.67
1586 4341 4.527157 AGGCTACGACGCGTACGC 62.527 66.667 29.83 29.83 45.53 4.42
1983 4998 0.681733 ACTACTAGGCGCATGGATGG 59.318 55.000 13.72 4.06 0.00 3.51
1984 4999 0.681733 CTACTAGGCGCATGGATGGT 59.318 55.000 13.72 1.26 0.00 3.55
1985 5000 1.070758 CTACTAGGCGCATGGATGGTT 59.929 52.381 13.72 0.00 0.00 3.67
1986 5001 0.179045 ACTAGGCGCATGGATGGTTC 60.179 55.000 13.72 0.00 0.00 3.62
1989 5004 2.484062 GGCGCATGGATGGTTCCTG 61.484 63.158 10.83 0.00 43.07 3.86
1990 5005 1.750399 GCGCATGGATGGTTCCTGT 60.750 57.895 0.30 0.00 43.07 4.00
1991 5006 0.463654 GCGCATGGATGGTTCCTGTA 60.464 55.000 0.30 0.00 43.07 2.74
1992 5007 1.586422 CGCATGGATGGTTCCTGTAG 58.414 55.000 0.00 0.00 43.07 2.74
1993 5008 1.312815 GCATGGATGGTTCCTGTAGC 58.687 55.000 0.00 0.00 43.07 3.58
1995 5010 2.750807 GCATGGATGGTTCCTGTAGCAT 60.751 50.000 0.00 0.00 43.07 3.79
1996 5011 2.715749 TGGATGGTTCCTGTAGCATG 57.284 50.000 0.00 0.00 43.07 4.06
2254 5503 3.410631 TCTTTGCGTTCCACTTCCATA 57.589 42.857 0.00 0.00 0.00 2.74
2445 6752 7.943079 ATATGTCATCAAACCAATGTGAGAA 57.057 32.000 0.00 0.00 0.00 2.87
2481 6788 5.311385 ACCCAATAACCCTACTAAACACACT 59.689 40.000 0.00 0.00 0.00 3.55
2496 6803 0.538057 ACACTGGGACATGGCAACTG 60.538 55.000 0.00 0.00 38.20 3.16
2585 6892 3.322828 GCAAAACCAGGCATCATGGATAT 59.677 43.478 4.40 0.00 40.51 1.63
2587 6894 5.010922 GCAAAACCAGGCATCATGGATATAA 59.989 40.000 4.40 0.00 40.51 0.98
2615 6922 0.819582 CATTCTTGCCCCATCGCTTT 59.180 50.000 0.00 0.00 0.00 3.51
2625 6932 1.667724 CCCATCGCTTTAGCAACTGAG 59.332 52.381 2.29 0.00 42.21 3.35
2696 7017 1.337387 GTCTCCTGGTACTGCCGATAC 59.663 57.143 0.00 0.00 41.21 2.24
2732 7053 0.679640 CCTTTGGTCATTGGCGGCTA 60.680 55.000 11.43 1.99 0.00 3.93
2734 7055 0.037590 TTTGGTCATTGGCGGCTAGT 59.962 50.000 11.43 0.00 0.00 2.57
2769 7093 3.858877 GCAGACGACAGAGAGACAACAAT 60.859 47.826 0.00 0.00 0.00 2.71
2821 7148 2.357517 CGTGCGTCCCTTCTGCTT 60.358 61.111 0.00 0.00 0.00 3.91
2965 7445 2.099756 GCATATGGTTGTTGCCTTCTCC 59.900 50.000 4.56 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 9.429359 TGTATTTGATAAAATGTCCGCAAATTT 57.571 25.926 0.00 0.00 37.24 1.82
113 114 8.994429 TGTATTTGATAAAATGTCCGCAAATT 57.006 26.923 0.00 0.00 37.24 1.82
114 115 9.033481 CATGTATTTGATAAAATGTCCGCAAAT 57.967 29.630 0.00 0.00 38.83 2.32
115 116 8.246871 TCATGTATTTGATAAAATGTCCGCAAA 58.753 29.630 0.00 0.00 0.00 3.68
116 117 7.766283 TCATGTATTTGATAAAATGTCCGCAA 58.234 30.769 0.00 0.00 0.00 4.85
117 118 7.326968 TCATGTATTTGATAAAATGTCCGCA 57.673 32.000 0.00 0.00 0.00 5.69
118 119 7.096477 GCTTCATGTATTTGATAAAATGTCCGC 60.096 37.037 0.00 0.00 0.00 5.54
119 120 8.131100 AGCTTCATGTATTTGATAAAATGTCCG 58.869 33.333 0.00 0.00 0.00 4.79
120 121 9.807649 AAGCTTCATGTATTTGATAAAATGTCC 57.192 29.630 0.00 0.00 0.00 4.02
134 135 9.899226 GTGAACTAAAAGAAAAGCTTCATGTAT 57.101 29.630 0.00 0.00 35.24 2.29
135 136 8.898761 TGTGAACTAAAAGAAAAGCTTCATGTA 58.101 29.630 0.00 0.00 35.24 2.29
136 137 7.771183 TGTGAACTAAAAGAAAAGCTTCATGT 58.229 30.769 0.00 0.00 35.24 3.21
137 138 8.633075 TTGTGAACTAAAAGAAAAGCTTCATG 57.367 30.769 0.00 0.00 35.24 3.07
138 139 9.822185 AATTGTGAACTAAAAGAAAAGCTTCAT 57.178 25.926 0.00 0.00 35.24 2.57
139 140 9.651913 AAATTGTGAACTAAAAGAAAAGCTTCA 57.348 25.926 0.00 0.00 35.24 3.02
292 293 9.123902 CCTCCATCTTGTACAAATATTCATGAA 57.876 33.333 11.26 11.26 0.00 2.57
293 294 8.493607 TCCTCCATCTTGTACAAATATTCATGA 58.506 33.333 10.03 1.15 0.00 3.07
294 295 8.681486 TCCTCCATCTTGTACAAATATTCATG 57.319 34.615 10.03 5.35 0.00 3.07
295 296 9.347240 CTTCCTCCATCTTGTACAAATATTCAT 57.653 33.333 10.03 0.00 0.00 2.57
296 297 7.775093 CCTTCCTCCATCTTGTACAAATATTCA 59.225 37.037 10.03 0.00 0.00 2.57
297 298 7.255277 GCCTTCCTCCATCTTGTACAAATATTC 60.255 40.741 10.03 0.00 0.00 1.75
298 299 6.547510 GCCTTCCTCCATCTTGTACAAATATT 59.452 38.462 10.03 0.00 0.00 1.28
299 300 6.064717 GCCTTCCTCCATCTTGTACAAATAT 58.935 40.000 10.03 3.65 0.00 1.28
300 301 5.045213 TGCCTTCCTCCATCTTGTACAAATA 60.045 40.000 10.03 1.18 0.00 1.40
301 302 4.263905 TGCCTTCCTCCATCTTGTACAAAT 60.264 41.667 10.03 3.88 0.00 2.32
302 303 3.073798 TGCCTTCCTCCATCTTGTACAAA 59.926 43.478 10.03 1.56 0.00 2.83
303 304 2.642311 TGCCTTCCTCCATCTTGTACAA 59.358 45.455 8.28 8.28 0.00 2.41
304 305 2.027192 GTGCCTTCCTCCATCTTGTACA 60.027 50.000 0.00 0.00 0.00 2.90
305 306 2.633488 GTGCCTTCCTCCATCTTGTAC 58.367 52.381 0.00 0.00 0.00 2.90
306 307 1.207089 CGTGCCTTCCTCCATCTTGTA 59.793 52.381 0.00 0.00 0.00 2.41
307 308 0.036010 CGTGCCTTCCTCCATCTTGT 60.036 55.000 0.00 0.00 0.00 3.16
308 309 0.745845 CCGTGCCTTCCTCCATCTTG 60.746 60.000 0.00 0.00 0.00 3.02
309 310 0.909610 TCCGTGCCTTCCTCCATCTT 60.910 55.000 0.00 0.00 0.00 2.40
310 311 1.306141 TCCGTGCCTTCCTCCATCT 60.306 57.895 0.00 0.00 0.00 2.90
311 312 1.144936 CTCCGTGCCTTCCTCCATC 59.855 63.158 0.00 0.00 0.00 3.51
312 313 2.370445 CCTCCGTGCCTTCCTCCAT 61.370 63.158 0.00 0.00 0.00 3.41
313 314 3.003173 CCTCCGTGCCTTCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
314 315 2.593956 AACCTCCGTGCCTTCCTCC 61.594 63.158 0.00 0.00 0.00 4.30
315 316 1.376037 CAACCTCCGTGCCTTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
316 317 2.750350 CAACCTCCGTGCCTTCCT 59.250 61.111 0.00 0.00 0.00 3.36
317 318 3.056328 GCAACCTCCGTGCCTTCC 61.056 66.667 0.00 0.00 35.91 3.46
334 335 8.946103 TATTCACTTGAACTGAACCCATGGGG 62.946 46.154 34.27 18.84 42.21 4.96
335 336 1.888512 CACTTGAACTGAACCCATGGG 59.111 52.381 30.23 30.23 42.03 4.00
336 337 2.862541 TCACTTGAACTGAACCCATGG 58.137 47.619 4.14 4.14 0.00 3.66
337 338 6.764308 ATATTCACTTGAACTGAACCCATG 57.236 37.500 0.00 0.00 36.80 3.66
338 339 7.093771 GGAAATATTCACTTGAACTGAACCCAT 60.094 37.037 0.00 0.00 36.80 4.00
339 340 6.208599 GGAAATATTCACTTGAACTGAACCCA 59.791 38.462 0.00 0.00 36.80 4.51
340 341 6.208599 TGGAAATATTCACTTGAACTGAACCC 59.791 38.462 0.00 0.00 36.80 4.11
341 342 7.174946 TCTGGAAATATTCACTTGAACTGAACC 59.825 37.037 0.00 0.00 36.80 3.62
342 343 8.099364 TCTGGAAATATTCACTTGAACTGAAC 57.901 34.615 0.00 0.00 36.80 3.18
343 344 8.868522 ATCTGGAAATATTCACTTGAACTGAA 57.131 30.769 0.00 0.00 36.80 3.02
369 370 9.398921 GGGTGATCCTAATCATTCCCTATATAT 57.601 37.037 6.78 0.00 43.62 0.86
370 371 7.509318 CGGGTGATCCTAATCATTCCCTATATA 59.491 40.741 10.61 0.00 42.32 0.86
371 372 6.327626 CGGGTGATCCTAATCATTCCCTATAT 59.672 42.308 10.61 0.00 42.32 0.86
372 373 5.661312 CGGGTGATCCTAATCATTCCCTATA 59.339 44.000 10.61 0.00 42.32 1.31
373 374 4.471386 CGGGTGATCCTAATCATTCCCTAT 59.529 45.833 10.61 0.00 42.32 2.57
374 375 3.838317 CGGGTGATCCTAATCATTCCCTA 59.162 47.826 10.61 0.00 42.32 3.53
375 376 2.639839 CGGGTGATCCTAATCATTCCCT 59.360 50.000 10.61 0.00 42.32 4.20
376 377 2.637872 TCGGGTGATCCTAATCATTCCC 59.362 50.000 4.69 4.69 43.62 3.97
377 378 3.665190 GTCGGGTGATCCTAATCATTCC 58.335 50.000 0.00 0.00 43.62 3.01
378 379 3.005472 TCGTCGGGTGATCCTAATCATTC 59.995 47.826 0.00 0.00 43.62 2.67
379 380 2.963101 TCGTCGGGTGATCCTAATCATT 59.037 45.455 0.00 0.00 43.62 2.57
380 381 2.594131 TCGTCGGGTGATCCTAATCAT 58.406 47.619 0.00 0.00 43.62 2.45
381 382 2.061509 TCGTCGGGTGATCCTAATCA 57.938 50.000 0.00 0.00 39.63 2.57
382 383 3.662247 ATTCGTCGGGTGATCCTAATC 57.338 47.619 0.00 0.00 0.00 1.75
383 384 4.342951 TGTTATTCGTCGGGTGATCCTAAT 59.657 41.667 0.00 0.00 0.00 1.73
384 385 3.700539 TGTTATTCGTCGGGTGATCCTAA 59.299 43.478 0.00 0.00 0.00 2.69
385 386 3.289836 TGTTATTCGTCGGGTGATCCTA 58.710 45.455 0.00 0.00 0.00 2.94
386 387 2.104967 TGTTATTCGTCGGGTGATCCT 58.895 47.619 0.00 0.00 0.00 3.24
387 388 2.589798 TGTTATTCGTCGGGTGATCC 57.410 50.000 0.00 0.00 0.00 3.36
388 389 3.869246 ACATTGTTATTCGTCGGGTGATC 59.131 43.478 0.00 0.00 0.00 2.92
389 390 3.621268 CACATTGTTATTCGTCGGGTGAT 59.379 43.478 0.00 0.00 0.00 3.06
390 391 2.997303 CACATTGTTATTCGTCGGGTGA 59.003 45.455 0.00 0.00 0.00 4.02
391 392 2.739913 ACACATTGTTATTCGTCGGGTG 59.260 45.455 0.00 0.00 0.00 4.61
392 393 2.739913 CACACATTGTTATTCGTCGGGT 59.260 45.455 0.00 0.00 0.00 5.28
393 394 2.475519 GCACACATTGTTATTCGTCGGG 60.476 50.000 0.00 0.00 0.00 5.14
394 395 2.769376 GCACACATTGTTATTCGTCGG 58.231 47.619 0.00 0.00 0.00 4.79
395 396 2.159894 ACGCACACATTGTTATTCGTCG 60.160 45.455 0.00 0.00 0.00 5.12
396 397 3.404564 GACGCACACATTGTTATTCGTC 58.595 45.455 11.93 11.93 38.28 4.20
397 398 2.158841 GGACGCACACATTGTTATTCGT 59.841 45.455 3.75 3.75 0.00 3.85
398 399 2.769376 GGACGCACACATTGTTATTCG 58.231 47.619 0.00 0.00 0.00 3.34
399 400 2.769376 CGGACGCACACATTGTTATTC 58.231 47.619 0.00 0.00 0.00 1.75
400 401 1.135803 GCGGACGCACACATTGTTATT 60.136 47.619 12.31 0.00 41.49 1.40
401 402 0.446222 GCGGACGCACACATTGTTAT 59.554 50.000 12.31 0.00 41.49 1.89
402 403 1.570347 GGCGGACGCACACATTGTTA 61.570 55.000 18.95 0.00 44.11 2.41
403 404 2.637025 GCGGACGCACACATTGTT 59.363 55.556 12.31 0.00 41.49 2.83
404 405 3.353836 GGCGGACGCACACATTGT 61.354 61.111 18.95 0.00 44.11 2.71
405 406 4.444024 CGGCGGACGCACACATTG 62.444 66.667 18.95 0.00 44.11 2.82
424 425 1.171308 CAGATCCAACAGCCAGGTTG 58.829 55.000 0.79 0.79 45.97 3.77
425 426 1.067295 TCAGATCCAACAGCCAGGTT 58.933 50.000 0.00 0.00 0.00 3.50
426 427 1.293062 ATCAGATCCAACAGCCAGGT 58.707 50.000 0.00 0.00 0.00 4.00
427 428 2.431954 AATCAGATCCAACAGCCAGG 57.568 50.000 0.00 0.00 0.00 4.45
428 429 5.591472 TGATTAAATCAGATCCAACAGCCAG 59.409 40.000 0.00 0.00 33.59 4.85
429 430 5.508567 TGATTAAATCAGATCCAACAGCCA 58.491 37.500 0.00 0.00 33.59 4.75
442 443 9.547753 GTTGCTCCTAACTATCTGATTAAATCA 57.452 33.333 0.00 0.00 37.76 2.57
443 444 8.704234 CGTTGCTCCTAACTATCTGATTAAATC 58.296 37.037 0.00 0.00 0.00 2.17
444 445 8.204836 ACGTTGCTCCTAACTATCTGATTAAAT 58.795 33.333 0.00 0.00 0.00 1.40
445 446 7.553334 ACGTTGCTCCTAACTATCTGATTAAA 58.447 34.615 0.00 0.00 0.00 1.52
446 447 7.108841 ACGTTGCTCCTAACTATCTGATTAA 57.891 36.000 0.00 0.00 0.00 1.40
447 448 6.710597 ACGTTGCTCCTAACTATCTGATTA 57.289 37.500 0.00 0.00 0.00 1.75
448 449 5.599999 ACGTTGCTCCTAACTATCTGATT 57.400 39.130 0.00 0.00 0.00 2.57
449 450 6.902771 ATACGTTGCTCCTAACTATCTGAT 57.097 37.500 0.00 0.00 0.00 2.90
450 451 6.710597 AATACGTTGCTCCTAACTATCTGA 57.289 37.500 0.00 0.00 0.00 3.27
451 452 7.649973 AGTAATACGTTGCTCCTAACTATCTG 58.350 38.462 0.00 0.00 0.00 2.90
452 453 7.820578 AGTAATACGTTGCTCCTAACTATCT 57.179 36.000 0.00 0.00 0.00 1.98
453 454 8.997323 TCTAGTAATACGTTGCTCCTAACTATC 58.003 37.037 0.00 0.00 32.30 2.08
454 455 8.782144 GTCTAGTAATACGTTGCTCCTAACTAT 58.218 37.037 0.00 0.00 32.30 2.12
455 456 7.989741 AGTCTAGTAATACGTTGCTCCTAACTA 59.010 37.037 0.00 0.00 32.30 2.24
456 457 6.827762 AGTCTAGTAATACGTTGCTCCTAACT 59.172 38.462 0.00 0.00 32.30 2.24
457 458 7.025485 AGTCTAGTAATACGTTGCTCCTAAC 57.975 40.000 0.00 0.00 32.30 2.34
458 459 8.737168 TTAGTCTAGTAATACGTTGCTCCTAA 57.263 34.615 0.00 0.00 32.30 2.69
459 460 7.989741 ACTTAGTCTAGTAATACGTTGCTCCTA 59.010 37.037 0.00 0.00 32.30 2.94
460 461 6.827762 ACTTAGTCTAGTAATACGTTGCTCCT 59.172 38.462 0.00 0.00 32.30 3.69
461 462 7.025485 ACTTAGTCTAGTAATACGTTGCTCC 57.975 40.000 0.00 0.00 32.30 4.70
462 463 8.908172 AAACTTAGTCTAGTAATACGTTGCTC 57.092 34.615 0.00 0.00 32.30 4.26
463 464 9.136952 CAAAACTTAGTCTAGTAATACGTTGCT 57.863 33.333 0.00 0.00 34.50 3.91
464 465 8.378421 CCAAAACTTAGTCTAGTAATACGTTGC 58.622 37.037 0.00 0.00 0.00 4.17
465 466 9.630098 TCCAAAACTTAGTCTAGTAATACGTTG 57.370 33.333 0.00 0.00 0.00 4.10
467 468 9.631452 GTTCCAAAACTTAGTCTAGTAATACGT 57.369 33.333 0.00 0.00 32.36 3.57
468 469 9.852091 AGTTCCAAAACTTAGTCTAGTAATACG 57.148 33.333 0.00 0.00 43.28 3.06
484 485 7.066374 TGCAACAACAATTAAGTTCCAAAAC 57.934 32.000 0.00 0.00 35.50 2.43
485 486 7.672983 TTGCAACAACAATTAAGTTCCAAAA 57.327 28.000 0.00 0.00 0.00 2.44
486 487 7.768120 AGATTGCAACAACAATTAAGTTCCAAA 59.232 29.630 0.00 0.00 40.31 3.28
487 488 7.271511 AGATTGCAACAACAATTAAGTTCCAA 58.728 30.769 0.00 0.00 40.31 3.53
488 489 6.815089 AGATTGCAACAACAATTAAGTTCCA 58.185 32.000 0.00 0.00 40.31 3.53
489 490 7.095649 GGAAGATTGCAACAACAATTAAGTTCC 60.096 37.037 0.00 1.06 40.31 3.62
490 491 7.095649 GGGAAGATTGCAACAACAATTAAGTTC 60.096 37.037 0.00 0.00 40.31 3.01
491 492 6.705825 GGGAAGATTGCAACAACAATTAAGTT 59.294 34.615 0.00 0.00 40.31 2.66
492 493 6.183360 TGGGAAGATTGCAACAACAATTAAGT 60.183 34.615 0.00 0.00 40.31 2.24
493 494 6.146021 GTGGGAAGATTGCAACAACAATTAAG 59.854 38.462 0.00 0.00 40.31 1.85
494 495 5.988561 GTGGGAAGATTGCAACAACAATTAA 59.011 36.000 0.00 0.00 40.31 1.40
495 496 5.304101 AGTGGGAAGATTGCAACAACAATTA 59.696 36.000 0.00 0.00 40.31 1.40
496 497 4.101430 AGTGGGAAGATTGCAACAACAATT 59.899 37.500 0.00 0.00 40.31 2.32
497 498 3.642848 AGTGGGAAGATTGCAACAACAAT 59.357 39.130 0.00 0.00 42.88 2.71
498 499 3.030291 AGTGGGAAGATTGCAACAACAA 58.970 40.909 0.00 0.00 0.00 2.83
499 500 2.361757 CAGTGGGAAGATTGCAACAACA 59.638 45.455 0.00 0.00 0.00 3.33
500 501 2.863704 GCAGTGGGAAGATTGCAACAAC 60.864 50.000 0.00 0.00 36.59 3.32
501 502 1.340889 GCAGTGGGAAGATTGCAACAA 59.659 47.619 0.00 0.00 36.59 2.83
502 503 0.961019 GCAGTGGGAAGATTGCAACA 59.039 50.000 0.00 0.00 36.59 3.33
503 504 0.961019 TGCAGTGGGAAGATTGCAAC 59.039 50.000 0.00 0.00 42.96 4.17
504 505 3.435846 TGCAGTGGGAAGATTGCAA 57.564 47.368 0.00 0.00 42.96 4.08
505 506 0.961019 GTTGCAGTGGGAAGATTGCA 59.039 50.000 0.00 0.00 44.09 4.08
506 507 0.961019 TGTTGCAGTGGGAAGATTGC 59.039 50.000 0.00 0.00 37.09 3.56
507 508 3.947910 ATTGTTGCAGTGGGAAGATTG 57.052 42.857 0.00 0.00 0.00 2.67
508 509 3.007182 CCAATTGTTGCAGTGGGAAGATT 59.993 43.478 4.43 0.00 0.00 2.40
509 510 2.564062 CCAATTGTTGCAGTGGGAAGAT 59.436 45.455 4.43 0.00 0.00 2.40
510 511 1.962807 CCAATTGTTGCAGTGGGAAGA 59.037 47.619 4.43 0.00 0.00 2.87
511 512 1.688197 ACCAATTGTTGCAGTGGGAAG 59.312 47.619 4.43 0.00 35.32 3.46
512 513 1.411977 CACCAATTGTTGCAGTGGGAA 59.588 47.619 4.43 0.00 35.32 3.97
513 514 1.039068 CACCAATTGTTGCAGTGGGA 58.961 50.000 4.43 0.00 35.32 4.37
514 515 0.752054 ACACCAATTGTTGCAGTGGG 59.248 50.000 13.90 0.00 33.09 4.61
515 516 1.136695 ACACACCAATTGTTGCAGTGG 59.863 47.619 13.90 3.58 35.67 4.00
516 517 2.582728 ACACACCAATTGTTGCAGTG 57.417 45.000 2.45 6.57 35.67 3.66
517 518 2.891112 CAACACACCAATTGTTGCAGT 58.109 42.857 2.45 0.00 45.36 4.40
522 523 2.020720 TCTCGCAACACACCAATTGTT 58.979 42.857 4.43 0.00 35.67 2.83
523 524 1.674359 TCTCGCAACACACCAATTGT 58.326 45.000 4.43 0.00 39.97 2.71
524 525 2.485426 AGATCTCGCAACACACCAATTG 59.515 45.455 0.00 0.00 0.00 2.32
525 526 2.485426 CAGATCTCGCAACACACCAATT 59.515 45.455 0.00 0.00 0.00 2.32
526 527 2.079158 CAGATCTCGCAACACACCAAT 58.921 47.619 0.00 0.00 0.00 3.16
527 528 1.511850 CAGATCTCGCAACACACCAA 58.488 50.000 0.00 0.00 0.00 3.67
528 529 0.320683 CCAGATCTCGCAACACACCA 60.321 55.000 0.00 0.00 0.00 4.17
529 530 0.037326 TCCAGATCTCGCAACACACC 60.037 55.000 0.00 0.00 0.00 4.16
530 531 1.071605 GTCCAGATCTCGCAACACAC 58.928 55.000 0.00 0.00 0.00 3.82
531 532 0.037326 GGTCCAGATCTCGCAACACA 60.037 55.000 0.00 0.00 0.00 3.72
532 533 0.741221 GGGTCCAGATCTCGCAACAC 60.741 60.000 0.00 0.00 0.00 3.32
533 534 1.596934 GGGTCCAGATCTCGCAACA 59.403 57.895 0.00 0.00 0.00 3.33
534 535 1.519455 CGGGTCCAGATCTCGCAAC 60.519 63.158 0.00 0.00 0.00 4.17
535 536 2.721167 CCGGGTCCAGATCTCGCAA 61.721 63.158 0.00 0.00 0.00 4.85
536 537 2.928988 ATCCGGGTCCAGATCTCGCA 62.929 60.000 0.00 0.00 0.00 5.10
537 538 1.749334 AATCCGGGTCCAGATCTCGC 61.749 60.000 0.00 0.00 0.00 5.03
538 539 0.315568 GAATCCGGGTCCAGATCTCG 59.684 60.000 0.00 0.00 0.00 4.04
539 540 0.682292 GGAATCCGGGTCCAGATCTC 59.318 60.000 17.49 0.00 35.05 2.75
540 541 0.266152 AGGAATCCGGGTCCAGATCT 59.734 55.000 22.53 0.00 37.65 2.75
541 542 1.132500 AAGGAATCCGGGTCCAGATC 58.868 55.000 22.53 1.48 37.65 2.75
542 543 1.212935 CAAAGGAATCCGGGTCCAGAT 59.787 52.381 22.53 9.20 37.65 2.90
543 544 0.618458 CAAAGGAATCCGGGTCCAGA 59.382 55.000 22.53 0.00 37.65 3.86
544 545 0.618458 TCAAAGGAATCCGGGTCCAG 59.382 55.000 22.53 13.84 37.65 3.86
545 546 0.618458 CTCAAAGGAATCCGGGTCCA 59.382 55.000 22.53 5.55 37.65 4.02
546 547 0.618981 ACTCAAAGGAATCCGGGTCC 59.381 55.000 15.29 15.29 35.17 4.46
547 548 1.739067 CACTCAAAGGAATCCGGGTC 58.261 55.000 0.00 0.00 0.00 4.46
548 549 0.322546 GCACTCAAAGGAATCCGGGT 60.323 55.000 0.00 0.00 0.00 5.28
549 550 1.369091 CGCACTCAAAGGAATCCGGG 61.369 60.000 0.00 0.00 0.00 5.73
550 551 1.982073 GCGCACTCAAAGGAATCCGG 61.982 60.000 0.30 0.00 0.00 5.14
551 552 1.021390 AGCGCACTCAAAGGAATCCG 61.021 55.000 11.47 0.00 0.00 4.18
552 553 0.729690 GAGCGCACTCAAAGGAATCC 59.270 55.000 11.47 0.00 42.93 3.01
553 554 0.371645 CGAGCGCACTCAAAGGAATC 59.628 55.000 11.47 0.00 43.66 2.52
554 555 0.320771 ACGAGCGCACTCAAAGGAAT 60.321 50.000 11.47 0.00 43.66 3.01
555 556 0.944311 GACGAGCGCACTCAAAGGAA 60.944 55.000 11.47 0.00 43.66 3.36
556 557 1.372997 GACGAGCGCACTCAAAGGA 60.373 57.895 11.47 0.00 43.66 3.36
557 558 1.664649 TGACGAGCGCACTCAAAGG 60.665 57.895 11.47 0.00 43.66 3.11
558 559 1.488957 GTGACGAGCGCACTCAAAG 59.511 57.895 11.47 0.00 43.66 2.77
559 560 1.954146 GGTGACGAGCGCACTCAAA 60.954 57.895 11.47 0.00 43.66 2.69
560 561 2.355837 GGTGACGAGCGCACTCAA 60.356 61.111 11.47 0.00 43.66 3.02
561 562 3.295273 AGGTGACGAGCGCACTCA 61.295 61.111 11.47 6.53 43.66 3.41
562 563 2.807045 CAGGTGACGAGCGCACTC 60.807 66.667 11.47 3.71 39.75 3.51
563 564 3.606662 ACAGGTGACGAGCGCACT 61.607 61.111 11.47 0.00 36.53 4.40
564 565 3.406361 CACAGGTGACGAGCGCAC 61.406 66.667 11.47 0.96 35.56 5.34
567 568 2.807045 GAGCACAGGTGACGAGCG 60.807 66.667 3.10 0.00 0.00 5.03
568 569 2.433318 GGAGCACAGGTGACGAGC 60.433 66.667 3.10 0.00 0.00 5.03
569 570 1.214062 GAGGAGCACAGGTGACGAG 59.786 63.158 3.10 0.00 0.00 4.18
570 571 2.276116 GGAGGAGCACAGGTGACGA 61.276 63.158 3.10 0.00 0.00 4.20
571 572 2.262915 GGAGGAGCACAGGTGACG 59.737 66.667 3.10 0.00 0.00 4.35
572 573 2.665603 GGGAGGAGCACAGGTGAC 59.334 66.667 3.10 0.00 0.00 3.67
573 574 2.997315 CGGGAGGAGCACAGGTGA 60.997 66.667 3.10 0.00 0.00 4.02
574 575 2.997315 TCGGGAGGAGCACAGGTG 60.997 66.667 0.00 0.00 0.00 4.00
575 576 2.681778 CTCGGGAGGAGCACAGGT 60.682 66.667 0.00 0.00 35.63 4.00
582 583 0.174617 GACAAAGAGCTCGGGAGGAG 59.825 60.000 8.37 0.00 46.06 3.69
583 584 0.541998 TGACAAAGAGCTCGGGAGGA 60.542 55.000 8.37 0.00 0.00 3.71
584 585 0.321671 TTGACAAAGAGCTCGGGAGG 59.678 55.000 8.37 0.24 0.00 4.30
585 586 1.719600 CTTGACAAAGAGCTCGGGAG 58.280 55.000 8.37 2.52 35.19 4.30
586 587 0.320771 GCTTGACAAAGAGCTCGGGA 60.321 55.000 8.37 0.00 35.19 5.14
587 588 1.301677 GGCTTGACAAAGAGCTCGGG 61.302 60.000 8.37 4.40 38.89 5.14
588 589 1.301677 GGGCTTGACAAAGAGCTCGG 61.302 60.000 8.37 4.78 38.89 4.63
589 590 0.603707 TGGGCTTGACAAAGAGCTCG 60.604 55.000 8.37 0.00 42.34 5.03
590 591 0.877743 GTGGGCTTGACAAAGAGCTC 59.122 55.000 5.27 5.27 39.84 4.09
591 592 0.183492 TGTGGGCTTGACAAAGAGCT 59.817 50.000 0.00 0.00 38.89 4.09
592 593 0.312102 GTGTGGGCTTGACAAAGAGC 59.688 55.000 0.00 0.00 35.19 4.09
593 594 0.954452 GGTGTGGGCTTGACAAAGAG 59.046 55.000 0.00 0.00 35.19 2.85
594 595 0.550914 AGGTGTGGGCTTGACAAAGA 59.449 50.000 0.00 0.00 35.19 2.52
595 596 0.954452 GAGGTGTGGGCTTGACAAAG 59.046 55.000 0.00 0.00 36.41 2.77
596 597 0.467290 GGAGGTGTGGGCTTGACAAA 60.467 55.000 0.00 0.00 0.00 2.83
597 598 1.150536 GGAGGTGTGGGCTTGACAA 59.849 57.895 0.00 0.00 0.00 3.18
598 599 1.768684 GAGGAGGTGTGGGCTTGACA 61.769 60.000 0.00 0.00 0.00 3.58
599 600 1.003233 GAGGAGGTGTGGGCTTGAC 60.003 63.158 0.00 0.00 0.00 3.18
600 601 1.461268 TGAGGAGGTGTGGGCTTGA 60.461 57.895 0.00 0.00 0.00 3.02
601 602 1.302832 GTGAGGAGGTGTGGGCTTG 60.303 63.158 0.00 0.00 0.00 4.01
602 603 2.883828 CGTGAGGAGGTGTGGGCTT 61.884 63.158 0.00 0.00 0.00 4.35
603 604 3.314331 CGTGAGGAGGTGTGGGCT 61.314 66.667 0.00 0.00 0.00 5.19
605 606 3.314331 AGCGTGAGGAGGTGTGGG 61.314 66.667 0.00 0.00 0.00 4.61
606 607 2.047844 CAGCGTGAGGAGGTGTGG 60.048 66.667 0.00 0.00 32.96 4.17
607 608 2.740055 GCAGCGTGAGGAGGTGTG 60.740 66.667 0.00 0.00 39.11 3.82
608 609 2.919856 AGCAGCGTGAGGAGGTGT 60.920 61.111 0.00 0.00 39.11 4.16
609 610 2.125753 GAGCAGCGTGAGGAGGTG 60.126 66.667 0.00 0.00 39.81 4.00
610 611 3.386237 GGAGCAGCGTGAGGAGGT 61.386 66.667 0.00 0.00 0.00 3.85
611 612 4.504916 CGGAGCAGCGTGAGGAGG 62.505 72.222 0.00 0.00 0.00 4.30
612 613 3.443925 TCGGAGCAGCGTGAGGAG 61.444 66.667 0.00 0.00 0.00 3.69
613 614 3.749064 GTCGGAGCAGCGTGAGGA 61.749 66.667 0.00 0.00 0.00 3.71
614 615 4.803426 GGTCGGAGCAGCGTGAGG 62.803 72.222 1.64 0.00 0.00 3.86
615 616 3.362399 ATGGTCGGAGCAGCGTGAG 62.362 63.158 15.69 0.00 0.00 3.51
616 617 3.356639 GATGGTCGGAGCAGCGTGA 62.357 63.158 15.69 0.00 0.00 4.35
617 618 2.887568 GATGGTCGGAGCAGCGTG 60.888 66.667 15.69 0.00 0.00 5.34
621 622 4.147449 TGGCGATGGTCGGAGCAG 62.147 66.667 15.69 4.18 40.84 4.24
622 623 4.451150 GTGGCGATGGTCGGAGCA 62.451 66.667 12.80 12.80 40.84 4.26
624 625 4.873129 CGGTGGCGATGGTCGGAG 62.873 72.222 1.29 0.00 40.84 4.63
628 629 4.832608 GGGTCGGTGGCGATGGTC 62.833 72.222 0.00 0.00 0.00 4.02
629 630 3.968837 TAGGGTCGGTGGCGATGGT 62.969 63.158 0.00 0.00 0.00 3.55
630 631 3.151710 TAGGGTCGGTGGCGATGG 61.152 66.667 0.00 0.00 0.00 3.51
631 632 2.106332 GTAGGGTCGGTGGCGATG 59.894 66.667 0.00 0.00 0.00 3.84
632 633 3.152400 GGTAGGGTCGGTGGCGAT 61.152 66.667 0.00 0.00 0.00 4.58
635 636 2.206182 AATTGGGTAGGGTCGGTGGC 62.206 60.000 0.00 0.00 0.00 5.01
636 637 0.107361 GAATTGGGTAGGGTCGGTGG 60.107 60.000 0.00 0.00 0.00 4.61
637 638 0.107361 GGAATTGGGTAGGGTCGGTG 60.107 60.000 0.00 0.00 0.00 4.94
638 639 1.619807 CGGAATTGGGTAGGGTCGGT 61.620 60.000 0.00 0.00 0.00 4.69
639 640 1.145377 CGGAATTGGGTAGGGTCGG 59.855 63.158 0.00 0.00 0.00 4.79
640 641 1.523032 GCGGAATTGGGTAGGGTCG 60.523 63.158 0.00 0.00 0.00 4.79
641 642 1.523032 CGCGGAATTGGGTAGGGTC 60.523 63.158 0.00 0.00 0.00 4.46
642 643 2.248086 GACGCGGAATTGGGTAGGGT 62.248 60.000 12.47 0.00 34.88 4.34
643 644 1.523032 GACGCGGAATTGGGTAGGG 60.523 63.158 12.47 0.00 34.88 3.53
644 645 1.523032 GGACGCGGAATTGGGTAGG 60.523 63.158 12.47 0.00 34.88 3.18
645 646 1.523032 GGGACGCGGAATTGGGTAG 60.523 63.158 12.47 0.00 34.88 3.18
646 647 1.628238 ATGGGACGCGGAATTGGGTA 61.628 55.000 12.47 0.00 34.88 3.69
647 648 1.628238 TATGGGACGCGGAATTGGGT 61.628 55.000 12.47 0.00 37.78 4.51
648 649 0.250727 ATATGGGACGCGGAATTGGG 60.251 55.000 12.47 0.00 0.00 4.12
649 650 2.465860 TATATGGGACGCGGAATTGG 57.534 50.000 12.47 0.00 0.00 3.16
650 651 2.936498 GGATATATGGGACGCGGAATTG 59.064 50.000 12.47 0.00 0.00 2.32
651 652 2.838202 AGGATATATGGGACGCGGAATT 59.162 45.455 12.47 0.00 0.00 2.17
652 653 2.467880 AGGATATATGGGACGCGGAAT 58.532 47.619 12.47 0.23 0.00 3.01
653 654 1.933021 AGGATATATGGGACGCGGAA 58.067 50.000 12.47 0.00 0.00 4.30
654 655 2.812836 TAGGATATATGGGACGCGGA 57.187 50.000 12.47 0.00 0.00 5.54
655 656 3.880047 TTTAGGATATATGGGACGCGG 57.120 47.619 12.47 0.00 0.00 6.46
656 657 7.926555 AGATTTATTTAGGATATATGGGACGCG 59.073 37.037 3.53 3.53 0.00 6.01
657 658 9.614792 AAGATTTATTTAGGATATATGGGACGC 57.385 33.333 0.00 0.00 0.00 5.19
788 2195 4.967036 AGGAGCAGAATAAATGAGTAGCC 58.033 43.478 0.00 0.00 0.00 3.93
799 2206 9.231297 GCCATACATAAATTAAGGAGCAGAATA 57.769 33.333 0.00 0.00 0.00 1.75
817 2227 4.816126 TCTACTTAGGAGGTGCCATACAT 58.184 43.478 0.00 0.00 40.02 2.29
820 2230 5.340891 AGATCTACTTAGGAGGTGCCATA 57.659 43.478 0.00 0.00 40.02 2.74
835 2245 3.629398 CCAAGGGATTGCACAAGATCTAC 59.371 47.826 0.00 0.00 0.00 2.59
891 2476 6.517362 GCATATTGGCGCATCCTATCTCTATA 60.517 42.308 10.83 0.00 32.52 1.31
916 2501 9.747293 TTTGTGTATATGTATGCATTTTCATGG 57.253 29.630 3.54 0.00 36.58 3.66
935 2526 7.339721 TGGTCTTGGTTTCTTTGTATTTGTGTA 59.660 33.333 0.00 0.00 0.00 2.90
936 2527 6.153680 TGGTCTTGGTTTCTTTGTATTTGTGT 59.846 34.615 0.00 0.00 0.00 3.72
937 2528 6.568869 TGGTCTTGGTTTCTTTGTATTTGTG 58.431 36.000 0.00 0.00 0.00 3.33
938 2529 6.783708 TGGTCTTGGTTTCTTTGTATTTGT 57.216 33.333 0.00 0.00 0.00 2.83
953 2575 1.256812 GGTTGGGTCAATGGTCTTGG 58.743 55.000 0.00 0.00 0.00 3.61
954 2576 0.881118 CGGTTGGGTCAATGGTCTTG 59.119 55.000 0.00 0.00 0.00 3.02
1334 4074 0.676151 CTTCAGCTTCAGGTCCCTGC 60.676 60.000 8.53 0.00 43.31 4.85
1339 4079 2.394563 GCCGCTTCAGCTTCAGGTC 61.395 63.158 0.00 0.00 39.32 3.85
1411 4151 2.079925 GTTGGACTCGTAGTACCTCGT 58.920 52.381 7.08 0.00 0.00 4.18
1433 4188 4.587189 GCGCTGGGTAGGCCGTAG 62.587 72.222 0.00 0.00 34.97 3.51
1497 4252 1.051812 AATAGGCATCACGGGAGGAG 58.948 55.000 2.08 0.00 0.00 3.69
1565 4320 2.466982 TACGCGTCGTAGCCTCCAG 61.467 63.158 18.63 0.00 41.54 3.86
1566 4321 2.436469 TACGCGTCGTAGCCTCCA 60.436 61.111 18.63 0.00 41.54 3.86
1567 4322 2.023882 GTACGCGTCGTAGCCTCC 59.976 66.667 18.63 0.00 43.06 4.30
1568 4323 2.350537 CGTACGCGTCGTAGCCTC 60.351 66.667 18.63 0.00 43.06 4.70
1569 4324 4.527157 GCGTACGCGTCGTAGCCT 62.527 66.667 26.17 0.00 43.06 4.58
1983 4998 3.426859 CGATCGATTCATGCTACAGGAAC 59.573 47.826 10.26 0.00 36.99 3.62
1984 4999 3.552890 CCGATCGATTCATGCTACAGGAA 60.553 47.826 18.66 0.00 38.49 3.36
1985 5000 2.029918 CCGATCGATTCATGCTACAGGA 60.030 50.000 18.66 0.00 0.00 3.86
1986 5001 2.029918 TCCGATCGATTCATGCTACAGG 60.030 50.000 18.66 0.00 0.00 4.00
2254 5503 1.338200 GGTCGTCATCAACTTGCTCCT 60.338 52.381 0.00 0.00 0.00 3.69
2388 5637 9.626045 GGTTCAGAAATATTTGTCGAAGAAAAT 57.374 29.630 5.17 7.05 39.69 1.82
2389 5638 7.801315 CGGTTCAGAAATATTTGTCGAAGAAAA 59.199 33.333 5.17 0.00 39.69 2.29
2411 5660 4.771114 TTGATGACATATTCCCTCGGTT 57.229 40.909 0.00 0.00 0.00 4.44
2445 6752 4.215109 GGTTATTGGGTGGCTTCATGTAT 58.785 43.478 0.00 0.00 0.00 2.29
2481 6788 0.405198 ATGACAGTTGCCATGTCCCA 59.595 50.000 9.69 0.00 45.24 4.37
2496 6803 4.083057 GCTTCTCCTCAAAGTTTCCATGAC 60.083 45.833 0.00 0.00 0.00 3.06
2585 6892 3.088532 GGGCAAGAATGTGGACATGTTA 58.911 45.455 0.00 0.00 36.56 2.41
2587 6894 1.549203 GGGCAAGAATGTGGACATGT 58.451 50.000 0.00 0.00 36.56 3.21
2615 6922 6.233434 CCATTAAGGATATGCTCAGTTGCTA 58.767 40.000 0.00 0.00 41.22 3.49
2625 6932 3.334583 TCGAGGCCATTAAGGATATGC 57.665 47.619 5.01 0.00 41.22 3.14
2696 7017 3.505184 GCAACATACCCGCCGGTG 61.505 66.667 8.42 8.42 44.40 4.94
2754 7075 4.130118 GGTTGTCATTGTTGTCTCTCTGT 58.870 43.478 0.00 0.00 0.00 3.41
2769 7093 2.429930 CAGCGAAGGGGGTTGTCA 59.570 61.111 0.00 0.00 0.00 3.58
2821 7148 9.158233 ACTTTAGTCGTAGCTTGCATTAAATTA 57.842 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.