Multiple sequence alignment - TraesCS7B01G435700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G435700 chr7B 100.000 6037 0 0 1 6037 702319556 702325592 0.000000e+00 11149.0
1 TraesCS7B01G435700 chr7B 84.932 584 42 18 5398 5948 702428275 702428845 3.180000e-152 549.0
2 TraesCS7B01G435700 chr7B 85.333 375 29 8 4620 4986 702390636 702390992 1.240000e-96 364.0
3 TraesCS7B01G435700 chr7B 100.000 89 0 0 5949 6037 106108358 106108270 1.350000e-36 165.0
4 TraesCS7B01G435700 chr7B 83.065 124 6 4 5281 5398 702428116 702428230 1.380000e-16 99.0
5 TraesCS7B01G435700 chr7B 94.286 35 1 1 5391 5425 702324899 702324932 1.100000e-02 52.8
6 TraesCS7B01G435700 chr7B 94.286 35 1 1 5344 5377 702324946 702324980 1.100000e-02 52.8
7 TraesCS7B01G435700 chr7D 95.122 3239 105 31 1886 5091 612890351 612893569 0.000000e+00 5057.0
8 TraesCS7B01G435700 chr7D 93.319 943 46 6 861 1803 612889417 612890342 0.000000e+00 1376.0
9 TraesCS7B01G435700 chr7D 89.893 841 50 20 5 828 612888591 612889413 0.000000e+00 1050.0
10 TraesCS7B01G435700 chr7D 92.160 676 35 9 5282 5945 612893720 612894389 0.000000e+00 939.0
11 TraesCS7B01G435700 chr7D 80.992 121 14 7 5169 5289 612893575 612893686 3.000000e-13 87.9
12 TraesCS7B01G435700 chr7D 90.476 63 6 0 5088 5150 51998853 51998791 3.880000e-12 84.2
13 TraesCS7B01G435700 chr7D 94.286 35 1 1 5391 5425 612893782 612893815 1.100000e-02 52.8
14 TraesCS7B01G435700 chr7D 100.000 28 0 0 5350 5377 612893836 612893863 1.100000e-02 52.8
15 TraesCS7B01G435700 chr7A 96.566 1718 44 4 1883 3599 704271770 704273473 0.000000e+00 2832.0
16 TraesCS7B01G435700 chr7A 92.232 1519 88 13 3590 5091 704273615 704275120 0.000000e+00 2124.0
17 TraesCS7B01G435700 chr7A 93.916 904 47 4 864 1762 704270821 704271721 0.000000e+00 1358.0
18 TraesCS7B01G435700 chr7A 93.158 570 27 4 5391 5950 704275496 704276063 0.000000e+00 826.0
19 TraesCS7B01G435700 chr7A 88.551 690 60 12 183 857 704270044 704270729 0.000000e+00 819.0
20 TraesCS7B01G435700 chr7A 90.374 187 9 3 1 185 704269758 704269937 2.810000e-58 237.0
21 TraesCS7B01G435700 chr7A 95.876 97 4 0 5281 5377 704275433 704275529 2.250000e-34 158.0
22 TraesCS7B01G435700 chr7A 100.000 30 0 0 846 875 704270774 704270803 8.450000e-04 56.5
23 TraesCS7B01G435700 chr5B 88.562 306 31 2 5576 5881 291793399 291793098 9.560000e-98 368.0
24 TraesCS7B01G435700 chr5D 86.145 332 41 3 5550 5881 257510750 257510424 2.680000e-93 353.0
25 TraesCS7B01G435700 chr5D 90.909 66 6 0 5085 5150 215254056 215254121 8.330000e-14 89.8
26 TraesCS7B01G435700 chr5D 90.625 64 6 0 5087 5150 216627767 216627830 1.080000e-12 86.1
27 TraesCS7B01G435700 chr5A 88.276 290 34 0 5576 5865 342237852 342237563 1.250000e-91 348.0
28 TraesCS7B01G435700 chr1B 100.000 91 0 0 5947 6037 531534376 531534286 1.040000e-37 169.0
29 TraesCS7B01G435700 chr1B 98.876 89 1 0 5949 6037 130533558 130533470 6.260000e-35 159.0
30 TraesCS7B01G435700 chr1B 98.876 89 1 0 5949 6037 588227897 588227985 6.260000e-35 159.0
31 TraesCS7B01G435700 chr1B 91.071 56 3 2 902 956 615372943 615372997 2.330000e-09 75.0
32 TraesCS7B01G435700 chr4B 100.000 89 0 0 5949 6037 417766825 417766913 1.350000e-36 165.0
33 TraesCS7B01G435700 chr4B 98.876 89 1 0 5949 6037 538371705 538371617 6.260000e-35 159.0
34 TraesCS7B01G435700 chr4B 97.778 90 2 0 5948 6037 652280704 652280793 8.100000e-34 156.0
35 TraesCS7B01G435700 chr4B 92.982 57 4 0 5088 5144 24559645 24559701 3.880000e-12 84.2
36 TraesCS7B01G435700 chr3B 98.876 89 1 0 5949 6037 750357214 750357302 6.260000e-35 159.0
37 TraesCS7B01G435700 chr3B 90.625 64 4 2 5088 5150 417370139 417370201 3.880000e-12 84.2
38 TraesCS7B01G435700 chr2B 97.802 91 2 0 5947 6037 147482087 147482177 2.250000e-34 158.0
39 TraesCS7B01G435700 chr2B 92.188 64 4 1 5088 5150 563028084 563028021 8.330000e-14 89.8
40 TraesCS7B01G435700 chrUn 88.571 105 11 1 2716 2819 196936472 196936576 6.350000e-25 126.0
41 TraesCS7B01G435700 chrUn 87.619 105 12 1 2716 2819 196962254 196962358 2.960000e-23 121.0
42 TraesCS7B01G435700 chr6D 91.304 69 5 1 5082 5150 191651504 191651437 6.440000e-15 93.5
43 TraesCS7B01G435700 chr3D 90.476 63 6 0 5088 5150 49864442 49864504 3.880000e-12 84.2
44 TraesCS7B01G435700 chr6B 81.081 111 11 7 2190 2290 471050752 471050642 5.020000e-11 80.5
45 TraesCS7B01G435700 chr3A 88.060 67 8 0 5079 5145 642676889 642676823 5.020000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G435700 chr7B 702319556 702325592 6036 False 3751.533333 11149 96.190667 1 6037 3 chr7B.!!$F2 6036
1 TraesCS7B01G435700 chr7B 702428116 702428845 729 False 324.000000 549 83.998500 5281 5948 2 chr7B.!!$F3 667
2 TraesCS7B01G435700 chr7D 612888591 612894389 5798 False 1230.785714 5057 92.253143 5 5945 7 chr7D.!!$F1 5940
3 TraesCS7B01G435700 chr7A 704269758 704276063 6305 False 1051.312500 2832 93.834125 1 5950 8 chr7A.!!$F1 5949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 120 0.321387 CCATGAGCACAGAGCACACT 60.321 55.0 0.00 0.00 46.51 3.55 F
120 122 0.395686 ATGAGCACAGAGCACACTGT 59.604 50.0 5.60 5.60 46.51 3.55 F
1440 1657 0.179124 GAAGCCGCTGATCGAGAAGT 60.179 55.0 0.00 0.00 41.67 3.01 F
2591 2808 0.395036 TCCAAGGAGAGAGCCTCGAG 60.395 60.0 5.13 5.13 42.89 4.04 F
2882 3099 0.240945 CGTGCCCTTCATTGGTGTTC 59.759 55.0 0.00 0.00 0.00 3.18 F
4096 4471 2.910688 ACCTACATTACATGGAGCGG 57.089 50.0 0.00 0.00 40.01 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1034 1246 0.239879 CGATGGGGTTTGTTCCGTTG 59.760 55.000 0.0 0.0 0.00 4.10 R
1831 2048 1.135139 GCATCGTCTCTAGCAGAACCA 59.865 52.381 0.0 0.0 30.72 3.67 R
2768 2985 0.875059 GCCTCCTCTTTTTGTCCGTG 59.125 55.000 0.0 0.0 0.00 4.94 R
4096 4471 1.128692 GCAATTGTGTGCTCCTCGTAC 59.871 52.381 7.4 0.0 41.51 3.67 R
4372 4747 1.344763 ACAAGTGGTCCTGTCTAGTGC 59.655 52.381 0.0 0.0 0.00 4.40 R
5989 6685 0.033504 AGTCGTGCATCAAAGACCGT 59.966 50.000 0.0 0.0 34.41 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.840991 ACAAGATGACTATACCCGCCTA 58.159 45.455 0.00 0.00 0.00 3.93
90 92 9.479549 AATACTACATGGTTTGGAGAATTCATT 57.520 29.630 8.44 0.00 38.77 2.57
118 120 0.321387 CCATGAGCACAGAGCACACT 60.321 55.000 0.00 0.00 46.51 3.55
119 121 0.796927 CATGAGCACAGAGCACACTG 59.203 55.000 0.00 0.00 46.51 3.66
120 122 0.395686 ATGAGCACAGAGCACACTGT 59.604 50.000 5.60 5.60 46.51 3.55
126 128 2.977700 CAGAGCACACTGTTGTCGT 58.022 52.632 0.00 0.00 31.66 4.34
127 129 0.578683 CAGAGCACACTGTTGTCGTG 59.421 55.000 0.00 0.00 38.32 4.35
128 130 0.530650 AGAGCACACTGTTGTCGTGG 60.531 55.000 0.00 0.00 36.71 4.94
188 190 4.037923 CACCCAAGCAAGAAAACTACATGT 59.962 41.667 2.69 2.69 0.00 3.21
241 351 5.856455 CGTTTAGGCCAGTTTTAGTCATTTG 59.144 40.000 5.01 0.00 0.00 2.32
348 462 9.741647 ACTTCTTTTCTTGAATTCATGAACTTC 57.258 29.630 27.40 15.01 38.97 3.01
365 479 7.807977 TGAACTTCTATCTATTGCAATTCCC 57.192 36.000 18.75 0.00 0.00 3.97
649 775 2.545946 GCAAGCTCGTGAGTTTTTCTCT 59.454 45.455 0.00 0.00 43.13 3.10
723 849 8.829612 ACAAACTTTTTCAAATCCATGAACATC 58.170 29.630 0.00 0.00 38.95 3.06
757 884 7.363443 CCATATAGTTTTTCCAAACCGGTGAAT 60.363 37.037 8.52 0.00 43.08 2.57
880 1092 2.676471 AGGGCGAAATGTGGTGGC 60.676 61.111 0.00 0.00 0.00 5.01
882 1094 2.258286 GGCGAAATGTGGTGGCAC 59.742 61.111 9.70 9.70 0.00 5.01
885 1097 1.963855 CGAAATGTGGTGGCACCGA 60.964 57.895 30.14 20.23 42.58 4.69
961 1173 0.460311 GCCAGCTTAGCGAACTCCTA 59.540 55.000 0.00 0.00 0.00 2.94
967 1179 2.623889 GCTTAGCGAACTCCTATCCTCA 59.376 50.000 0.00 0.00 0.00 3.86
1012 1224 2.203422 CCGCTCCAAAACCCACCA 60.203 61.111 0.00 0.00 0.00 4.17
1021 1233 0.478507 AAAACCCACCACCTCCTCTG 59.521 55.000 0.00 0.00 0.00 3.35
1022 1234 0.401395 AAACCCACCACCTCCTCTGA 60.401 55.000 0.00 0.00 0.00 3.27
1029 1241 2.752238 ACCTCCTCTGACCTCGCG 60.752 66.667 0.00 0.00 0.00 5.87
1034 1246 2.182030 CTCTGACCTCGCGGAACC 59.818 66.667 6.13 0.00 0.00 3.62
1398 1615 1.152839 GACGAGGAGGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
1399 1616 1.619975 ACGAGGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
1400 1617 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1440 1657 0.179124 GAAGCCGCTGATCGAGAAGT 60.179 55.000 0.00 0.00 41.67 3.01
1643 1860 3.023116 CATGGCTTCCCCTCCCCA 61.023 66.667 0.00 0.00 0.00 4.96
1674 1891 4.338879 CTCTCCATTTCCACCACATTTCT 58.661 43.478 0.00 0.00 0.00 2.52
1677 1894 2.497273 CCATTTCCACCACATTTCTCCC 59.503 50.000 0.00 0.00 0.00 4.30
1701 1918 4.080186 TCATGAGTCATGTGAATCCATGGT 60.080 41.667 28.03 0.00 41.98 3.55
1704 1921 2.756760 AGTCATGTGAATCCATGGTTGC 59.243 45.455 12.58 2.10 42.02 4.17
1753 1970 2.404215 CATGCCACACGTATAGGTAGC 58.596 52.381 0.00 3.09 0.00 3.58
1808 2025 6.582437 GGTACCTTGTGTTTTGATTTGTTG 57.418 37.500 4.06 0.00 0.00 3.33
1809 2026 6.334202 GGTACCTTGTGTTTTGATTTGTTGA 58.666 36.000 4.06 0.00 0.00 3.18
1810 2027 6.983890 GGTACCTTGTGTTTTGATTTGTTGAT 59.016 34.615 4.06 0.00 0.00 2.57
1811 2028 6.907206 ACCTTGTGTTTTGATTTGTTGATG 57.093 33.333 0.00 0.00 0.00 3.07
1812 2029 6.405538 ACCTTGTGTTTTGATTTGTTGATGT 58.594 32.000 0.00 0.00 0.00 3.06
1813 2030 7.551585 ACCTTGTGTTTTGATTTGTTGATGTA 58.448 30.769 0.00 0.00 0.00 2.29
1814 2031 8.037758 ACCTTGTGTTTTGATTTGTTGATGTAA 58.962 29.630 0.00 0.00 0.00 2.41
1815 2032 8.327429 CCTTGTGTTTTGATTTGTTGATGTAAC 58.673 33.333 0.00 0.00 39.80 2.50
1829 2046 8.028540 TGTTGATGTAACAGTGACATGATTAC 57.971 34.615 8.44 0.00 44.07 1.89
1830 2047 7.877612 TGTTGATGTAACAGTGACATGATTACT 59.122 33.333 8.44 0.00 44.07 2.24
1831 2048 8.721478 GTTGATGTAACAGTGACATGATTACTT 58.279 33.333 8.44 0.00 37.65 2.24
1832 2049 8.255394 TGATGTAACAGTGACATGATTACTTG 57.745 34.615 8.44 0.00 37.65 3.16
1833 2050 7.334171 TGATGTAACAGTGACATGATTACTTGG 59.666 37.037 8.44 0.00 37.65 3.61
1834 2051 6.530120 TGTAACAGTGACATGATTACTTGGT 58.470 36.000 0.00 0.00 0.00 3.67
1835 2052 6.995686 TGTAACAGTGACATGATTACTTGGTT 59.004 34.615 0.00 5.04 0.00 3.67
1836 2053 6.560253 AACAGTGACATGATTACTTGGTTC 57.440 37.500 0.00 0.00 0.00 3.62
1837 2054 5.869579 ACAGTGACATGATTACTTGGTTCT 58.130 37.500 0.00 0.00 0.00 3.01
1838 2055 5.702670 ACAGTGACATGATTACTTGGTTCTG 59.297 40.000 0.00 0.00 0.00 3.02
1839 2056 4.697352 AGTGACATGATTACTTGGTTCTGC 59.303 41.667 0.00 0.00 0.00 4.26
1840 2057 4.697352 GTGACATGATTACTTGGTTCTGCT 59.303 41.667 0.00 0.00 0.00 4.24
1841 2058 5.874810 GTGACATGATTACTTGGTTCTGCTA 59.125 40.000 0.00 0.00 0.00 3.49
1842 2059 6.036517 GTGACATGATTACTTGGTTCTGCTAG 59.963 42.308 0.00 0.00 0.00 3.42
1843 2060 6.070824 TGACATGATTACTTGGTTCTGCTAGA 60.071 38.462 0.00 0.00 0.00 2.43
1844 2061 6.344500 ACATGATTACTTGGTTCTGCTAGAG 58.656 40.000 0.00 0.00 0.00 2.43
1845 2062 6.155221 ACATGATTACTTGGTTCTGCTAGAGA 59.845 38.462 0.00 0.00 0.00 3.10
1846 2063 5.967088 TGATTACTTGGTTCTGCTAGAGAC 58.033 41.667 0.00 0.00 0.00 3.36
1847 2064 4.436242 TTACTTGGTTCTGCTAGAGACG 57.564 45.455 0.00 0.00 0.00 4.18
1848 2065 2.515854 ACTTGGTTCTGCTAGAGACGA 58.484 47.619 0.00 0.00 0.00 4.20
1849 2066 3.093057 ACTTGGTTCTGCTAGAGACGAT 58.907 45.455 0.00 0.00 0.00 3.73
1850 2067 3.119316 ACTTGGTTCTGCTAGAGACGATG 60.119 47.826 0.00 0.00 0.00 3.84
1851 2068 1.135139 TGGTTCTGCTAGAGACGATGC 59.865 52.381 0.00 0.00 0.00 3.91
1852 2069 1.135139 GGTTCTGCTAGAGACGATGCA 59.865 52.381 0.00 0.00 0.00 3.96
1853 2070 2.223923 GGTTCTGCTAGAGACGATGCAT 60.224 50.000 0.00 0.00 34.79 3.96
1854 2071 3.004839 GGTTCTGCTAGAGACGATGCATA 59.995 47.826 0.00 0.00 34.79 3.14
1855 2072 4.321601 GGTTCTGCTAGAGACGATGCATAT 60.322 45.833 0.00 0.00 34.79 1.78
1856 2073 4.693538 TCTGCTAGAGACGATGCATATC 57.306 45.455 0.00 0.00 34.79 1.63
1857 2074 3.441922 TCTGCTAGAGACGATGCATATCC 59.558 47.826 0.00 0.00 34.79 2.59
1858 2075 3.425659 TGCTAGAGACGATGCATATCCT 58.574 45.455 0.00 3.33 0.00 3.24
1859 2076 3.829026 TGCTAGAGACGATGCATATCCTT 59.171 43.478 0.00 0.00 0.00 3.36
1860 2077 4.172505 GCTAGAGACGATGCATATCCTTG 58.827 47.826 0.00 3.27 0.00 3.61
1861 2078 4.321601 GCTAGAGACGATGCATATCCTTGT 60.322 45.833 0.00 0.00 0.00 3.16
1862 2079 5.106118 GCTAGAGACGATGCATATCCTTGTA 60.106 44.000 0.00 0.00 0.00 2.41
1863 2080 5.384063 AGAGACGATGCATATCCTTGTAG 57.616 43.478 0.00 0.00 0.00 2.74
1864 2081 3.919216 AGACGATGCATATCCTTGTAGC 58.081 45.455 0.00 0.00 0.00 3.58
1865 2082 3.576118 AGACGATGCATATCCTTGTAGCT 59.424 43.478 0.00 0.00 0.00 3.32
1866 2083 3.919216 ACGATGCATATCCTTGTAGCTC 58.081 45.455 0.00 0.00 0.00 4.09
1867 2084 3.576118 ACGATGCATATCCTTGTAGCTCT 59.424 43.478 0.00 0.00 0.00 4.09
1868 2085 4.172505 CGATGCATATCCTTGTAGCTCTC 58.827 47.826 0.00 0.00 0.00 3.20
1869 2086 4.321527 CGATGCATATCCTTGTAGCTCTCA 60.322 45.833 0.00 0.00 0.00 3.27
1870 2087 5.624052 CGATGCATATCCTTGTAGCTCTCAT 60.624 44.000 0.00 0.00 0.00 2.90
1871 2088 5.144692 TGCATATCCTTGTAGCTCTCATC 57.855 43.478 0.00 0.00 0.00 2.92
1872 2089 4.837298 TGCATATCCTTGTAGCTCTCATCT 59.163 41.667 0.00 0.00 0.00 2.90
1873 2090 5.170021 GCATATCCTTGTAGCTCTCATCTG 58.830 45.833 0.00 0.00 0.00 2.90
1874 2091 3.749665 ATCCTTGTAGCTCTCATCTGC 57.250 47.619 0.00 0.00 0.00 4.26
1875 2092 2.460669 TCCTTGTAGCTCTCATCTGCA 58.539 47.619 0.00 0.00 0.00 4.41
1876 2093 2.167281 TCCTTGTAGCTCTCATCTGCAC 59.833 50.000 0.00 0.00 0.00 4.57
1877 2094 2.093816 CCTTGTAGCTCTCATCTGCACA 60.094 50.000 0.00 0.00 0.00 4.57
1878 2095 3.431905 CCTTGTAGCTCTCATCTGCACAT 60.432 47.826 0.00 0.00 0.00 3.21
1879 2096 3.449528 TGTAGCTCTCATCTGCACATC 57.550 47.619 0.00 0.00 0.00 3.06
1880 2097 2.102084 TGTAGCTCTCATCTGCACATCC 59.898 50.000 0.00 0.00 0.00 3.51
1881 2098 1.201424 AGCTCTCATCTGCACATCCA 58.799 50.000 0.00 0.00 0.00 3.41
1882 2099 1.558294 AGCTCTCATCTGCACATCCAA 59.442 47.619 0.00 0.00 0.00 3.53
1883 2100 2.026542 AGCTCTCATCTGCACATCCAAA 60.027 45.455 0.00 0.00 0.00 3.28
1884 2101 2.751259 GCTCTCATCTGCACATCCAAAA 59.249 45.455 0.00 0.00 0.00 2.44
1926 2143 6.992715 GCCTCACATATATATTACCATGACCC 59.007 42.308 0.00 0.00 0.00 4.46
1927 2144 7.147479 GCCTCACATATATATTACCATGACCCT 60.147 40.741 0.00 0.00 0.00 4.34
2066 2283 5.136105 AGGAATCCATCTATGTTTTGCTCC 58.864 41.667 0.61 0.00 0.00 4.70
2123 2340 7.715686 CCATCACAGTCACAGATACTACTAGTA 59.284 40.741 1.89 1.89 34.82 1.82
2159 2376 3.960102 TCCTGAATGTTGCTTTGTTCCTT 59.040 39.130 0.00 0.00 0.00 3.36
2544 2761 3.131400 TCCGGACGATGTGATTGATAACA 59.869 43.478 0.00 0.00 0.00 2.41
2591 2808 0.395036 TCCAAGGAGAGAGCCTCGAG 60.395 60.000 5.13 5.13 42.89 4.04
2617 2834 3.876320 GAGGATGAGGAGTTCAATGAAGC 59.124 47.826 0.00 0.00 39.77 3.86
2880 3097 2.268076 GCGTGCCCTTCATTGGTGT 61.268 57.895 0.00 0.00 0.00 4.16
2881 3098 1.805428 GCGTGCCCTTCATTGGTGTT 61.805 55.000 0.00 0.00 0.00 3.32
2882 3099 0.240945 CGTGCCCTTCATTGGTGTTC 59.759 55.000 0.00 0.00 0.00 3.18
2918 3135 5.011943 ACATTTGTAACTCCATTGTGCCAAT 59.988 36.000 0.00 0.00 0.00 3.16
2991 3208 7.144722 TGATGTGAAGGTCATTGATGTTAAC 57.855 36.000 0.00 0.00 0.00 2.01
3208 3425 4.623932 TGCAATACAGAGGGTATGGATC 57.376 45.455 0.00 0.00 41.87 3.36
3305 3522 7.663081 TCATCCATTCCACTATTAGCTCATTTC 59.337 37.037 0.00 0.00 0.00 2.17
3314 3531 7.554118 CCACTATTAGCTCATTTCCTTTTCTCA 59.446 37.037 0.00 0.00 0.00 3.27
3544 3762 7.994911 TGGTAGATTCATATGACATTTGCTTCT 59.005 33.333 4.48 4.79 0.00 2.85
3573 3791 5.806654 AACAAAATTTGCTGGTCCAGTAT 57.193 34.783 20.24 8.78 33.43 2.12
3684 4053 8.019669 GCAATACTTTTCTGGTATATGCAGATG 58.980 37.037 3.54 0.00 35.86 2.90
3750 4119 9.138062 GAGTTACTACTACTTTTAGGCTTCAAC 57.862 37.037 0.00 0.00 33.84 3.18
3803 4172 4.397417 GGCTCTTACATGACATTTGCTTCT 59.603 41.667 0.00 0.00 0.00 2.85
3819 4188 9.033481 CATTTGCTTCTTCTCAAAACAAATGTA 57.967 29.630 14.31 0.00 43.70 2.29
3820 4189 8.994429 TTTGCTTCTTCTCAAAACAAATGTAA 57.006 26.923 0.00 0.00 30.19 2.41
4032 4407 3.102972 TCAGCTCTTACATGAAGCTCCT 58.897 45.455 0.00 0.00 34.87 3.69
4096 4471 2.910688 ACCTACATTACATGGAGCGG 57.089 50.000 0.00 0.00 40.01 5.52
4099 4474 3.069158 ACCTACATTACATGGAGCGGTAC 59.931 47.826 0.00 0.00 40.01 3.34
4372 4747 2.611518 GTGTGCTTCTGCTGTACTAGG 58.388 52.381 0.00 0.00 40.48 3.02
4420 4795 3.964031 TGGATTTGCAAAGTGGTAACCTT 59.036 39.130 18.19 0.00 0.00 3.50
4421 4796 5.141182 TGGATTTGCAAAGTGGTAACCTTA 58.859 37.500 18.19 0.00 0.00 2.69
4422 4797 5.777732 TGGATTTGCAAAGTGGTAACCTTAT 59.222 36.000 18.19 0.00 0.00 1.73
4526 4901 1.488261 GCCGTGCGTGCTCTATTACC 61.488 60.000 0.00 0.00 0.00 2.85
4561 4936 5.949952 ACTTAAAGTGTTTTTGTGTCCTCCT 59.050 36.000 0.00 0.00 0.00 3.69
4563 4938 3.644966 AGTGTTTTTGTGTCCTCCTGA 57.355 42.857 0.00 0.00 0.00 3.86
4608 4984 9.593134 TGCTATCTGTATTTTTGTTTGTTTTGT 57.407 25.926 0.00 0.00 0.00 2.83
4694 5070 2.949451 AGCGAGGTAGTCATCTGTTG 57.051 50.000 0.00 0.00 0.00 3.33
4721 5098 0.872021 GGAGATCACGTCATGTCGGC 60.872 60.000 16.43 3.53 34.94 5.54
4796 5173 2.771089 GTGAGACCTCTGTTTGCATCA 58.229 47.619 0.00 0.00 0.00 3.07
4828 5205 1.686355 ATTTGTTTGTCCTGCGACCA 58.314 45.000 0.00 0.00 38.32 4.02
4864 5241 4.023739 GGGTACCGTAATGTTTTGATGC 57.976 45.455 5.65 0.00 40.86 3.91
4899 5276 2.236146 TGTAACCAGATAGCAGGTGGTG 59.764 50.000 0.00 0.00 44.07 4.17
4900 5277 1.362224 AACCAGATAGCAGGTGGTGT 58.638 50.000 0.00 0.00 44.07 4.16
4922 5299 7.422399 GTGTTATTTACTTGGCAAAGAGAACA 58.578 34.615 8.15 2.49 36.84 3.18
4930 5307 1.620323 GGCAAAGAGAACAAAGGCCAT 59.380 47.619 5.01 0.00 39.66 4.40
4986 5367 0.955428 TCTGCAATTCTGTCGTGGCC 60.955 55.000 0.00 0.00 0.00 5.36
5002 5409 2.641815 GTGGCCATCTTAGATGGATCCT 59.358 50.000 37.12 0.00 41.64 3.24
5004 5411 4.081198 GTGGCCATCTTAGATGGATCCTAG 60.081 50.000 37.12 14.89 41.64 3.02
5015 5422 5.219739 AGATGGATCCTAGCTTGGTAGAAA 58.780 41.667 14.23 0.00 0.00 2.52
5025 5432 9.975218 TCCTAGCTTGGTAGAAAGAATAAAAAT 57.025 29.630 14.12 0.00 0.00 1.82
5030 5437 9.929180 GCTTGGTAGAAAGAATAAAAATCCTTT 57.071 29.630 0.00 0.00 0.00 3.11
5080 5487 3.829886 TGGTTTGCTCGTTTCATCATC 57.170 42.857 0.00 0.00 0.00 2.92
5091 5498 7.976175 TGCTCGTTTCATCATCCATATATACTC 59.024 37.037 0.00 0.00 0.00 2.59
5092 5499 7.436673 GCTCGTTTCATCATCCATATATACTCC 59.563 40.741 0.00 0.00 0.00 3.85
5093 5500 7.782049 TCGTTTCATCATCCATATATACTCCC 58.218 38.462 0.00 0.00 0.00 4.30
5095 5502 7.923344 CGTTTCATCATCCATATATACTCCCTC 59.077 40.741 0.00 0.00 0.00 4.30
5096 5503 7.921041 TTCATCATCCATATATACTCCCTCC 57.079 40.000 0.00 0.00 0.00 4.30
5097 5504 6.071320 TCATCATCCATATATACTCCCTCCG 58.929 44.000 0.00 0.00 0.00 4.63
5098 5505 5.467668 TCATCCATATATACTCCCTCCGT 57.532 43.478 0.00 0.00 0.00 4.69
5099 5506 5.446860 TCATCCATATATACTCCCTCCGTC 58.553 45.833 0.00 0.00 0.00 4.79
5100 5507 4.246712 TCCATATATACTCCCTCCGTCC 57.753 50.000 0.00 0.00 0.00 4.79
5101 5508 3.053095 TCCATATATACTCCCTCCGTCCC 60.053 52.174 0.00 0.00 0.00 4.46
5102 5509 3.309629 CCATATATACTCCCTCCGTCCCA 60.310 52.174 0.00 0.00 0.00 4.37
5103 5510 2.305858 ATATACTCCCTCCGTCCCAC 57.694 55.000 0.00 0.00 0.00 4.61
5104 5511 0.928505 TATACTCCCTCCGTCCCACA 59.071 55.000 0.00 0.00 0.00 4.17
5105 5512 0.042131 ATACTCCCTCCGTCCCACAA 59.958 55.000 0.00 0.00 0.00 3.33
5106 5513 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
5107 5514 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
5108 5515 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
5109 5516 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
5110 5517 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
5111 5518 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
5112 5519 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
5113 5520 3.006967 CCCTCCGTCCCACAATATAAGAG 59.993 52.174 0.00 0.00 0.00 2.85
5114 5521 3.555168 CCTCCGTCCCACAATATAAGAGC 60.555 52.174 0.00 0.00 0.00 4.09
5115 5522 2.367567 TCCGTCCCACAATATAAGAGCC 59.632 50.000 0.00 0.00 0.00 4.70
5116 5523 2.368875 CCGTCCCACAATATAAGAGCCT 59.631 50.000 0.00 0.00 0.00 4.58
5117 5524 3.181454 CCGTCCCACAATATAAGAGCCTT 60.181 47.826 0.00 0.00 0.00 4.35
5118 5525 4.451900 CGTCCCACAATATAAGAGCCTTT 58.548 43.478 0.00 0.00 0.00 3.11
5119 5526 4.881850 CGTCCCACAATATAAGAGCCTTTT 59.118 41.667 0.00 0.00 0.00 2.27
5120 5527 5.357032 CGTCCCACAATATAAGAGCCTTTTT 59.643 40.000 0.00 0.00 0.00 1.94
5121 5528 6.564328 GTCCCACAATATAAGAGCCTTTTTG 58.436 40.000 0.00 0.00 0.00 2.44
5122 5529 6.377146 GTCCCACAATATAAGAGCCTTTTTGA 59.623 38.462 0.00 0.00 0.00 2.69
5123 5530 6.377146 TCCCACAATATAAGAGCCTTTTTGAC 59.623 38.462 0.00 0.00 0.00 3.18
5124 5531 6.152661 CCCACAATATAAGAGCCTTTTTGACA 59.847 38.462 0.00 0.00 0.00 3.58
5125 5532 7.029563 CCACAATATAAGAGCCTTTTTGACAC 58.970 38.462 0.00 0.00 0.00 3.67
5126 5533 7.094205 CCACAATATAAGAGCCTTTTTGACACT 60.094 37.037 0.00 0.00 0.00 3.55
5127 5534 8.946085 CACAATATAAGAGCCTTTTTGACACTA 58.054 33.333 0.00 0.00 0.00 2.74
5128 5535 8.947115 ACAATATAAGAGCCTTTTTGACACTAC 58.053 33.333 0.00 0.00 0.00 2.73
5129 5536 8.946085 CAATATAAGAGCCTTTTTGACACTACA 58.054 33.333 0.00 0.00 0.00 2.74
5130 5537 6.803154 ATAAGAGCCTTTTTGACACTACAC 57.197 37.500 0.00 0.00 0.00 2.90
5131 5538 4.423625 AGAGCCTTTTTGACACTACACT 57.576 40.909 0.00 0.00 0.00 3.55
5132 5539 4.781934 AGAGCCTTTTTGACACTACACTT 58.218 39.130 0.00 0.00 0.00 3.16
5133 5540 4.576463 AGAGCCTTTTTGACACTACACTTG 59.424 41.667 0.00 0.00 0.00 3.16
5134 5541 4.270008 AGCCTTTTTGACACTACACTTGT 58.730 39.130 0.00 0.00 0.00 3.16
5135 5542 4.096382 AGCCTTTTTGACACTACACTTGTG 59.904 41.667 0.00 0.00 40.87 3.33
5144 5551 5.961395 ACACTACACTTGTGTTAGAAACG 57.039 39.130 11.80 0.00 45.11 3.60
5145 5552 4.269363 ACACTACACTTGTGTTAGAAACGC 59.731 41.667 11.80 0.00 45.11 4.84
5152 5559 2.634600 TGTGTTAGAAACGCACTTGGT 58.365 42.857 2.08 0.00 46.08 3.67
5153 5560 3.011119 TGTGTTAGAAACGCACTTGGTT 58.989 40.909 2.08 0.00 46.08 3.67
5154 5561 3.440872 TGTGTTAGAAACGCACTTGGTTT 59.559 39.130 2.08 0.00 46.08 3.27
5155 5562 3.789224 GTGTTAGAAACGCACTTGGTTTG 59.211 43.478 0.00 0.00 41.43 2.93
5156 5563 2.766970 TAGAAACGCACTTGGTTTGC 57.233 45.000 0.00 0.00 37.70 3.68
5157 5564 1.102978 AGAAACGCACTTGGTTTGCT 58.897 45.000 0.00 0.00 37.70 3.91
5158 5565 1.065551 AGAAACGCACTTGGTTTGCTC 59.934 47.619 0.00 0.00 37.70 4.26
5159 5566 1.065551 GAAACGCACTTGGTTTGCTCT 59.934 47.619 0.00 0.00 37.70 4.09
5160 5567 0.381801 AACGCACTTGGTTTGCTCTG 59.618 50.000 0.00 0.00 37.87 3.35
5161 5568 0.463654 ACGCACTTGGTTTGCTCTGA 60.464 50.000 0.00 0.00 37.87 3.27
5162 5569 0.662619 CGCACTTGGTTTGCTCTGAA 59.337 50.000 0.00 0.00 37.87 3.02
5163 5570 1.065401 CGCACTTGGTTTGCTCTGAAA 59.935 47.619 0.00 0.00 37.87 2.69
5164 5571 2.463876 GCACTTGGTTTGCTCTGAAAC 58.536 47.619 0.00 0.00 37.00 2.78
5165 5572 2.159254 GCACTTGGTTTGCTCTGAAACA 60.159 45.455 0.00 0.00 37.53 2.83
5166 5573 3.438360 CACTTGGTTTGCTCTGAAACAC 58.562 45.455 0.00 0.00 37.53 3.32
5167 5574 3.088532 ACTTGGTTTGCTCTGAAACACA 58.911 40.909 0.00 0.00 37.53 3.72
5207 5614 6.899393 AGTAATCAAATTTGCTGGAGTTGA 57.101 33.333 13.54 0.00 33.08 3.18
5212 5619 4.276678 TCAAATTTGCTGGAGTTGACTGAG 59.723 41.667 13.54 0.00 0.00 3.35
5225 5632 6.295011 GGAGTTGACTGAGGGATGTATATCAG 60.295 46.154 1.63 0.00 43.81 2.90
5283 5885 8.363390 TCAGACATAGATGGATGTTCACTAATC 58.637 37.037 0.00 0.00 40.18 1.75
5312 5920 7.865706 AGGGCTAGTTAATTACTCAAATGTG 57.134 36.000 0.00 0.00 38.33 3.21
5328 5936 6.979465 TCAAATGTGAATGTGTGCTTGATTA 58.021 32.000 0.00 0.00 0.00 1.75
5391 5999 0.678048 CCTGCCTACTTGGTTGGAGC 60.678 60.000 2.63 0.00 38.35 4.70
5434 6097 1.526315 TCTCCCCTGCATTCATCCAT 58.474 50.000 0.00 0.00 0.00 3.41
5451 6114 7.252612 TCATCCATTAGAGTTTTGGTACTGA 57.747 36.000 0.00 0.00 0.00 3.41
5466 6129 5.116180 TGGTACTGAATATCAAAAGAGGCG 58.884 41.667 0.00 0.00 0.00 5.52
5507 6170 5.075493 GGAGGCATCATCCATTACATCTTT 58.925 41.667 0.00 0.00 36.79 2.52
5565 6248 2.863809 ACCAGCGATTTCTTTTCCAGT 58.136 42.857 0.00 0.00 0.00 4.00
5568 6251 3.120060 CCAGCGATTTCTTTTCCAGTGAG 60.120 47.826 0.00 0.00 0.00 3.51
5569 6252 3.077359 AGCGATTTCTTTTCCAGTGAGG 58.923 45.455 0.00 0.00 39.47 3.86
5571 6254 3.077359 CGATTTCTTTTCCAGTGAGGCT 58.923 45.455 0.00 0.00 37.29 4.58
5616 6300 1.139734 GTCGAGCTCGCCAAGATCA 59.860 57.895 30.97 8.61 40.58 2.92
5631 6315 2.092323 AGATCACCGTCGTCATCTTGA 58.908 47.619 0.00 0.00 0.00 3.02
5688 6372 5.388164 CGTGATAGCATTCATGATCAACTCG 60.388 44.000 0.00 0.00 35.10 4.18
5775 6462 0.988145 CCAGTCCTGGCTTCCCCATA 60.988 60.000 0.00 0.00 44.33 2.74
5808 6495 3.064958 TCTTGATCACCTCATCGTCGTAC 59.935 47.826 0.00 0.00 32.72 3.67
5882 6570 1.081094 GCATGCTCAAAACCAATGGC 58.919 50.000 11.37 0.00 0.00 4.40
5950 6646 3.792716 GCCAACTGCCACACAATAC 57.207 52.632 0.00 0.00 0.00 1.89
5951 6647 1.247567 GCCAACTGCCACACAATACT 58.752 50.000 0.00 0.00 0.00 2.12
5952 6648 1.200020 GCCAACTGCCACACAATACTC 59.800 52.381 0.00 0.00 0.00 2.59
5953 6649 1.812571 CCAACTGCCACACAATACTCC 59.187 52.381 0.00 0.00 0.00 3.85
5954 6650 1.812571 CAACTGCCACACAATACTCCC 59.187 52.381 0.00 0.00 0.00 4.30
5955 6651 1.362224 ACTGCCACACAATACTCCCT 58.638 50.000 0.00 0.00 0.00 4.20
5956 6652 1.279271 ACTGCCACACAATACTCCCTC 59.721 52.381 0.00 0.00 0.00 4.30
5957 6653 0.618458 TGCCACACAATACTCCCTCC 59.382 55.000 0.00 0.00 0.00 4.30
5958 6654 0.912486 GCCACACAATACTCCCTCCT 59.088 55.000 0.00 0.00 0.00 3.69
5959 6655 1.282157 GCCACACAATACTCCCTCCTT 59.718 52.381 0.00 0.00 0.00 3.36
5960 6656 2.681097 GCCACACAATACTCCCTCCTTC 60.681 54.545 0.00 0.00 0.00 3.46
5961 6657 2.092914 CCACACAATACTCCCTCCTTCC 60.093 54.545 0.00 0.00 0.00 3.46
5962 6658 2.092914 CACACAATACTCCCTCCTTCCC 60.093 54.545 0.00 0.00 0.00 3.97
5963 6659 2.196595 CACAATACTCCCTCCTTCCCA 58.803 52.381 0.00 0.00 0.00 4.37
5964 6660 2.576191 CACAATACTCCCTCCTTCCCAA 59.424 50.000 0.00 0.00 0.00 4.12
5965 6661 3.010138 CACAATACTCCCTCCTTCCCAAA 59.990 47.826 0.00 0.00 0.00 3.28
5966 6662 3.660669 ACAATACTCCCTCCTTCCCAAAA 59.339 43.478 0.00 0.00 0.00 2.44
5967 6663 4.294970 ACAATACTCCCTCCTTCCCAAAAT 59.705 41.667 0.00 0.00 0.00 1.82
5968 6664 5.494706 ACAATACTCCCTCCTTCCCAAAATA 59.505 40.000 0.00 0.00 0.00 1.40
5969 6665 6.162241 ACAATACTCCCTCCTTCCCAAAATAT 59.838 38.462 0.00 0.00 0.00 1.28
5970 6666 7.352522 ACAATACTCCCTCCTTCCCAAAATATA 59.647 37.037 0.00 0.00 0.00 0.86
5971 6667 7.964730 ATACTCCCTCCTTCCCAAAATATAA 57.035 36.000 0.00 0.00 0.00 0.98
5972 6668 6.267492 ACTCCCTCCTTCCCAAAATATAAG 57.733 41.667 0.00 0.00 0.00 1.73
5973 6669 5.134509 ACTCCCTCCTTCCCAAAATATAAGG 59.865 44.000 0.00 0.00 39.93 2.69
5974 6670 4.141018 TCCCTCCTTCCCAAAATATAAGGC 60.141 45.833 0.00 0.00 38.70 4.35
5975 6671 3.821033 CCTCCTTCCCAAAATATAAGGCG 59.179 47.826 0.00 0.00 38.70 5.52
5976 6672 3.219281 TCCTTCCCAAAATATAAGGCGC 58.781 45.455 0.00 0.00 38.70 6.53
5977 6673 2.031157 CCTTCCCAAAATATAAGGCGCG 60.031 50.000 0.00 0.00 32.66 6.86
5978 6674 2.623878 TCCCAAAATATAAGGCGCGA 57.376 45.000 12.10 0.00 0.00 5.87
5979 6675 3.134574 TCCCAAAATATAAGGCGCGAT 57.865 42.857 12.10 0.00 0.00 4.58
5980 6676 3.482436 TCCCAAAATATAAGGCGCGATT 58.518 40.909 12.10 6.21 0.00 3.34
5981 6677 3.252215 TCCCAAAATATAAGGCGCGATTG 59.748 43.478 12.10 0.00 0.00 2.67
5982 6678 3.252215 CCCAAAATATAAGGCGCGATTGA 59.748 43.478 12.10 0.00 0.00 2.57
5983 6679 4.219033 CCAAAATATAAGGCGCGATTGAC 58.781 43.478 12.10 0.00 0.00 3.18
5984 6680 4.024048 CCAAAATATAAGGCGCGATTGACT 60.024 41.667 12.10 0.00 0.00 3.41
5985 6681 5.505654 CCAAAATATAAGGCGCGATTGACTT 60.506 40.000 12.10 7.96 0.00 3.01
5986 6682 5.751243 AAATATAAGGCGCGATTGACTTT 57.249 34.783 12.10 0.00 0.00 2.66
5987 6683 5.751243 AATATAAGGCGCGATTGACTTTT 57.249 34.783 12.10 3.43 0.00 2.27
5988 6684 5.751243 ATATAAGGCGCGATTGACTTTTT 57.249 34.783 12.10 0.00 0.00 1.94
5989 6685 6.854496 ATATAAGGCGCGATTGACTTTTTA 57.146 33.333 12.10 0.00 0.00 1.52
5990 6686 2.894307 AGGCGCGATTGACTTTTTAC 57.106 45.000 12.10 0.00 0.00 2.01
5991 6687 1.127951 AGGCGCGATTGACTTTTTACG 59.872 47.619 12.10 0.00 0.00 3.18
5992 6688 1.520368 GCGCGATTGACTTTTTACGG 58.480 50.000 12.10 0.00 0.00 4.02
5993 6689 1.136169 GCGCGATTGACTTTTTACGGT 60.136 47.619 12.10 0.00 0.00 4.83
5994 6690 2.754478 CGCGATTGACTTTTTACGGTC 58.246 47.619 0.00 0.00 0.00 4.79
5995 6691 2.410730 CGCGATTGACTTTTTACGGTCT 59.589 45.455 0.00 0.00 34.01 3.85
5996 6692 3.120786 CGCGATTGACTTTTTACGGTCTT 60.121 43.478 0.00 0.00 34.01 3.01
5997 6693 4.609783 CGCGATTGACTTTTTACGGTCTTT 60.610 41.667 0.00 0.00 34.01 2.52
5998 6694 4.611366 GCGATTGACTTTTTACGGTCTTTG 59.389 41.667 0.00 0.00 34.01 2.77
5999 6695 5.559417 GCGATTGACTTTTTACGGTCTTTGA 60.559 40.000 0.00 0.00 34.01 2.69
6000 6696 6.599437 CGATTGACTTTTTACGGTCTTTGAT 58.401 36.000 0.00 0.00 34.01 2.57
6001 6697 6.519761 CGATTGACTTTTTACGGTCTTTGATG 59.480 38.462 0.00 0.00 34.01 3.07
6002 6698 5.103290 TGACTTTTTACGGTCTTTGATGC 57.897 39.130 0.00 0.00 34.01 3.91
6003 6699 4.576873 TGACTTTTTACGGTCTTTGATGCA 59.423 37.500 0.00 0.00 34.01 3.96
6004 6700 4.855531 ACTTTTTACGGTCTTTGATGCAC 58.144 39.130 0.00 0.00 0.00 4.57
6005 6701 3.529634 TTTTACGGTCTTTGATGCACG 57.470 42.857 0.00 0.00 0.00 5.34
6006 6702 2.442212 TTACGGTCTTTGATGCACGA 57.558 45.000 0.00 0.00 0.00 4.35
6007 6703 1.705256 TACGGTCTTTGATGCACGAC 58.295 50.000 0.00 0.00 0.00 4.34
6008 6704 0.033504 ACGGTCTTTGATGCACGACT 59.966 50.000 0.00 0.00 0.00 4.18
6009 6705 1.148310 CGGTCTTTGATGCACGACTT 58.852 50.000 0.00 0.00 0.00 3.01
6010 6706 1.531149 CGGTCTTTGATGCACGACTTT 59.469 47.619 0.00 0.00 0.00 2.66
6011 6707 2.662791 CGGTCTTTGATGCACGACTTTG 60.663 50.000 0.00 0.00 0.00 2.77
6012 6708 2.548057 GGTCTTTGATGCACGACTTTGA 59.452 45.455 0.00 0.00 0.00 2.69
6013 6709 3.545633 GTCTTTGATGCACGACTTTGAC 58.454 45.455 0.00 0.00 0.00 3.18
6014 6710 2.548057 TCTTTGATGCACGACTTTGACC 59.452 45.455 0.00 0.00 0.00 4.02
6015 6711 1.960417 TTGATGCACGACTTTGACCA 58.040 45.000 0.00 0.00 0.00 4.02
6016 6712 1.225855 TGATGCACGACTTTGACCAC 58.774 50.000 0.00 0.00 0.00 4.16
6017 6713 1.202639 TGATGCACGACTTTGACCACT 60.203 47.619 0.00 0.00 0.00 4.00
6018 6714 2.036604 TGATGCACGACTTTGACCACTA 59.963 45.455 0.00 0.00 0.00 2.74
6019 6715 2.605837 TGCACGACTTTGACCACTAA 57.394 45.000 0.00 0.00 0.00 2.24
6020 6716 3.120321 TGCACGACTTTGACCACTAAT 57.880 42.857 0.00 0.00 0.00 1.73
6021 6717 4.260139 TGCACGACTTTGACCACTAATA 57.740 40.909 0.00 0.00 0.00 0.98
6022 6718 4.827692 TGCACGACTTTGACCACTAATAT 58.172 39.130 0.00 0.00 0.00 1.28
6023 6719 5.968254 TGCACGACTTTGACCACTAATATA 58.032 37.500 0.00 0.00 0.00 0.86
6024 6720 6.578944 TGCACGACTTTGACCACTAATATAT 58.421 36.000 0.00 0.00 0.00 0.86
6025 6721 7.718525 TGCACGACTTTGACCACTAATATATA 58.281 34.615 0.00 0.00 0.00 0.86
6026 6722 8.364894 TGCACGACTTTGACCACTAATATATAT 58.635 33.333 0.00 0.00 0.00 0.86
6027 6723 8.861101 GCACGACTTTGACCACTAATATATATC 58.139 37.037 0.00 0.00 0.00 1.63
6028 6724 9.908152 CACGACTTTGACCACTAATATATATCA 57.092 33.333 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.520691 TGTAGGCGGGTATAGTCATCT 57.479 47.619 0.00 0.00 0.00 2.90
10 11 4.157246 ACATGATCTTGTAGGCGGGTATA 58.843 43.478 12.27 0.00 0.00 1.47
16 17 5.126396 TCAGATACATGATCTTGTAGGCG 57.874 43.478 21.74 14.04 42.70 5.52
21 22 6.053632 TGTGGTTCAGATACATGATCTTGT 57.946 37.500 17.37 17.37 42.70 3.16
90 92 1.297689 GTGCTCATGGCTCCTGACA 59.702 57.895 7.54 0.00 42.39 3.58
110 112 0.529773 TCCACGACAACAGTGTGCTC 60.530 55.000 0.00 0.00 38.41 4.26
113 115 1.593006 GACTTCCACGACAACAGTGTG 59.407 52.381 0.00 0.00 38.41 3.82
114 116 1.472728 GGACTTCCACGACAACAGTGT 60.473 52.381 0.00 0.00 37.88 3.55
115 117 1.217882 GGACTTCCACGACAACAGTG 58.782 55.000 0.00 0.00 39.19 3.66
116 118 0.828022 TGGACTTCCACGACAACAGT 59.172 50.000 0.00 0.00 42.01 3.55
126 128 2.513259 GGTGGACCGTGGACTTCCA 61.513 63.158 0.00 0.00 45.30 3.53
127 129 2.346365 GGTGGACCGTGGACTTCC 59.654 66.667 0.00 0.00 0.00 3.46
128 130 2.168666 GAGGGTGGACCGTGGACTTC 62.169 65.000 0.00 0.00 46.96 3.01
308 422 8.526681 CAAGAAAAGAAGTTCACGAATTTGAAG 58.473 33.333 5.50 0.00 36.15 3.02
353 467 8.319881 TCATGAATTTGAAAGGGAATTGCAATA 58.680 29.630 13.39 0.00 36.27 1.90
357 471 7.619964 AATCATGAATTTGAAAGGGAATTGC 57.380 32.000 0.00 0.00 0.00 3.56
386 501 8.704849 TTGAAGAAAAGTTCATGGATTTAGGA 57.295 30.769 0.00 0.00 36.34 2.94
387 502 9.933723 ATTTGAAGAAAAGTTCATGGATTTAGG 57.066 29.630 0.00 0.00 36.34 2.69
392 507 9.431887 CATGAATTTGAAGAAAAGTTCATGGAT 57.568 29.630 19.36 0.00 41.99 3.41
396 511 9.649167 GGATCATGAATTTGAAGAAAAGTTCAT 57.351 29.630 0.00 2.85 36.96 2.57
397 512 8.863086 AGGATCATGAATTTGAAGAAAAGTTCA 58.137 29.630 0.00 0.00 34.56 3.18
398 513 9.702494 AAGGATCATGAATTTGAAGAAAAGTTC 57.298 29.630 0.00 0.00 0.00 3.01
446 561 8.818141 TTGGAAAACATTATTACGCATTTGAA 57.182 26.923 0.00 0.00 0.00 2.69
491 606 8.263640 TGGAAAAGTTCATGGATTTCTTGAAAA 58.736 29.630 0.00 0.00 39.97 2.29
673 799 7.807433 TGTGGATAACTGAAACAAAAATCATCG 59.193 33.333 0.00 0.00 0.00 3.84
674 800 9.474920 TTGTGGATAACTGAAACAAAAATCATC 57.525 29.630 0.00 0.00 0.00 2.92
733 859 7.712204 ATTCACCGGTTTGGAAAAACTATAT 57.288 32.000 2.97 0.00 42.00 0.86
839 966 2.784380 CGAGTCATTAGTAGCTTCGTGC 59.216 50.000 0.00 0.00 43.29 5.34
840 967 3.786576 CACGAGTCATTAGTAGCTTCGTG 59.213 47.826 14.97 14.97 41.40 4.35
842 969 4.274421 TCACGAGTCATTAGTAGCTTCG 57.726 45.455 0.00 0.00 0.00 3.79
880 1092 0.110644 GTTGCTCGCTTCTTTCGGTG 60.111 55.000 0.00 0.00 0.00 4.94
882 1094 1.227999 TGGTTGCTCGCTTCTTTCGG 61.228 55.000 0.00 0.00 0.00 4.30
885 1097 1.845809 CGCTGGTTGCTCGCTTCTTT 61.846 55.000 0.00 0.00 40.11 2.52
961 1173 1.493871 CTTGATGGGCCTCTTGAGGAT 59.506 52.381 19.85 5.08 0.00 3.24
994 1206 2.114411 GGTGGGTTTTGGAGCGGA 59.886 61.111 0.00 0.00 0.00 5.54
1012 1224 2.752238 CGCGAGGTCAGAGGAGGT 60.752 66.667 0.00 0.00 0.00 3.85
1029 1241 0.386476 GGGTTTGTTCCGTTGGTTCC 59.614 55.000 0.00 0.00 0.00 3.62
1034 1246 0.239879 CGATGGGGTTTGTTCCGTTG 59.760 55.000 0.00 0.00 0.00 4.10
1249 1466 4.803426 GCGGCTCACTGTCCCTCG 62.803 72.222 0.00 0.00 0.00 4.63
1629 1846 3.412408 GAGTGGGGAGGGGAAGCC 61.412 72.222 0.00 0.00 0.00 4.35
1643 1860 3.054065 GTGGAAATGGAGAGGAATGGAGT 60.054 47.826 0.00 0.00 0.00 3.85
1674 1891 3.135348 GGATTCACATGACTCATGAGGGA 59.865 47.826 26.08 12.58 43.81 4.20
1701 1918 4.790937 TGATGCATTGTATAAGAGGGCAA 58.209 39.130 0.00 0.00 33.09 4.52
1704 1921 5.368256 GCTTGATGCATTGTATAAGAGGG 57.632 43.478 0.00 0.00 42.31 4.30
1792 2009 8.031864 ACTGTTACATCAACAAATCAAAACACA 58.968 29.630 0.00 0.00 46.37 3.72
1806 2023 8.720562 CAAGTAATCATGTCACTGTTACATCAA 58.279 33.333 4.69 0.00 35.39 2.57
1808 2025 7.334421 ACCAAGTAATCATGTCACTGTTACATC 59.666 37.037 4.69 0.00 35.39 3.06
1809 2026 7.168219 ACCAAGTAATCATGTCACTGTTACAT 58.832 34.615 1.87 1.87 38.08 2.29
1810 2027 6.530120 ACCAAGTAATCATGTCACTGTTACA 58.470 36.000 0.00 0.00 0.00 2.41
1811 2028 7.387948 AGAACCAAGTAATCATGTCACTGTTAC 59.612 37.037 0.00 0.00 0.00 2.50
1812 2029 7.387673 CAGAACCAAGTAATCATGTCACTGTTA 59.612 37.037 0.00 0.00 0.00 2.41
1813 2030 6.205464 CAGAACCAAGTAATCATGTCACTGTT 59.795 38.462 0.00 0.00 0.00 3.16
1814 2031 5.702670 CAGAACCAAGTAATCATGTCACTGT 59.297 40.000 0.00 0.00 0.00 3.55
1815 2032 5.391310 GCAGAACCAAGTAATCATGTCACTG 60.391 44.000 0.00 0.00 0.00 3.66
1816 2033 4.697352 GCAGAACCAAGTAATCATGTCACT 59.303 41.667 0.00 0.00 0.00 3.41
1817 2034 4.697352 AGCAGAACCAAGTAATCATGTCAC 59.303 41.667 0.00 0.00 0.00 3.67
1818 2035 4.910195 AGCAGAACCAAGTAATCATGTCA 58.090 39.130 0.00 0.00 0.00 3.58
1819 2036 6.341316 TCTAGCAGAACCAAGTAATCATGTC 58.659 40.000 0.00 0.00 0.00 3.06
1820 2037 6.155221 TCTCTAGCAGAACCAAGTAATCATGT 59.845 38.462 0.00 0.00 0.00 3.21
1821 2038 6.478344 GTCTCTAGCAGAACCAAGTAATCATG 59.522 42.308 0.00 0.00 30.72 3.07
1822 2039 6.578023 GTCTCTAGCAGAACCAAGTAATCAT 58.422 40.000 0.00 0.00 30.72 2.45
1823 2040 5.393135 CGTCTCTAGCAGAACCAAGTAATCA 60.393 44.000 0.00 0.00 30.72 2.57
1824 2041 5.038033 CGTCTCTAGCAGAACCAAGTAATC 58.962 45.833 0.00 0.00 30.72 1.75
1825 2042 4.705507 TCGTCTCTAGCAGAACCAAGTAAT 59.294 41.667 0.00 0.00 30.72 1.89
1826 2043 4.077108 TCGTCTCTAGCAGAACCAAGTAA 58.923 43.478 0.00 0.00 30.72 2.24
1827 2044 3.682696 TCGTCTCTAGCAGAACCAAGTA 58.317 45.455 0.00 0.00 30.72 2.24
1828 2045 2.515854 TCGTCTCTAGCAGAACCAAGT 58.484 47.619 0.00 0.00 30.72 3.16
1829 2046 3.443037 CATCGTCTCTAGCAGAACCAAG 58.557 50.000 0.00 0.00 30.72 3.61
1830 2047 2.417379 GCATCGTCTCTAGCAGAACCAA 60.417 50.000 0.00 0.00 30.72 3.67
1831 2048 1.135139 GCATCGTCTCTAGCAGAACCA 59.865 52.381 0.00 0.00 30.72 3.67
1832 2049 1.135139 TGCATCGTCTCTAGCAGAACC 59.865 52.381 0.00 0.00 30.72 3.62
1833 2050 2.568696 TGCATCGTCTCTAGCAGAAC 57.431 50.000 0.00 0.00 30.72 3.01
1834 2051 4.082517 GGATATGCATCGTCTCTAGCAGAA 60.083 45.833 0.19 0.00 40.71 3.02
1835 2052 3.441922 GGATATGCATCGTCTCTAGCAGA 59.558 47.826 0.19 0.00 40.71 4.26
1836 2053 3.443329 AGGATATGCATCGTCTCTAGCAG 59.557 47.826 0.19 0.00 40.71 4.24
1837 2054 3.425659 AGGATATGCATCGTCTCTAGCA 58.574 45.455 0.19 0.00 41.73 3.49
1838 2055 4.172505 CAAGGATATGCATCGTCTCTAGC 58.827 47.826 0.19 0.00 31.33 3.42
1839 2056 5.384063 ACAAGGATATGCATCGTCTCTAG 57.616 43.478 0.19 0.00 31.33 2.43
1840 2057 5.106118 GCTACAAGGATATGCATCGTCTCTA 60.106 44.000 0.19 0.00 31.33 2.43
1841 2058 4.321601 GCTACAAGGATATGCATCGTCTCT 60.322 45.833 0.19 0.27 31.33 3.10
1842 2059 3.923461 GCTACAAGGATATGCATCGTCTC 59.077 47.826 0.19 0.00 31.33 3.36
1843 2060 3.576118 AGCTACAAGGATATGCATCGTCT 59.424 43.478 0.19 0.00 31.33 4.18
1844 2061 3.919216 AGCTACAAGGATATGCATCGTC 58.081 45.455 0.19 2.62 31.33 4.20
1845 2062 3.576118 AGAGCTACAAGGATATGCATCGT 59.424 43.478 0.19 0.00 31.33 3.73
1846 2063 4.172505 GAGAGCTACAAGGATATGCATCG 58.827 47.826 0.19 0.00 31.33 3.84
1847 2064 5.144692 TGAGAGCTACAAGGATATGCATC 57.855 43.478 0.19 0.00 0.00 3.91
1848 2065 5.484644 AGATGAGAGCTACAAGGATATGCAT 59.515 40.000 3.79 3.79 0.00 3.96
1849 2066 4.837298 AGATGAGAGCTACAAGGATATGCA 59.163 41.667 0.00 0.00 0.00 3.96
1850 2067 5.170021 CAGATGAGAGCTACAAGGATATGC 58.830 45.833 0.00 0.00 0.00 3.14
1851 2068 5.170021 GCAGATGAGAGCTACAAGGATATG 58.830 45.833 0.00 0.00 0.00 1.78
1852 2069 4.837298 TGCAGATGAGAGCTACAAGGATAT 59.163 41.667 0.00 0.00 0.00 1.63
1853 2070 4.038522 GTGCAGATGAGAGCTACAAGGATA 59.961 45.833 0.00 0.00 0.00 2.59
1854 2071 3.036819 TGCAGATGAGAGCTACAAGGAT 58.963 45.455 0.00 0.00 0.00 3.24
1855 2072 2.167281 GTGCAGATGAGAGCTACAAGGA 59.833 50.000 0.00 0.00 0.00 3.36
1856 2073 2.093816 TGTGCAGATGAGAGCTACAAGG 60.094 50.000 0.00 0.00 0.00 3.61
1857 2074 3.242549 TGTGCAGATGAGAGCTACAAG 57.757 47.619 0.00 0.00 0.00 3.16
1858 2075 3.431346 GGATGTGCAGATGAGAGCTACAA 60.431 47.826 0.00 0.00 0.00 2.41
1859 2076 2.102084 GGATGTGCAGATGAGAGCTACA 59.898 50.000 0.00 0.00 0.00 2.74
1860 2077 2.102084 TGGATGTGCAGATGAGAGCTAC 59.898 50.000 0.00 0.00 0.00 3.58
1861 2078 2.391678 TGGATGTGCAGATGAGAGCTA 58.608 47.619 0.00 0.00 0.00 3.32
1862 2079 1.201424 TGGATGTGCAGATGAGAGCT 58.799 50.000 0.00 0.00 0.00 4.09
1863 2080 2.034104 TTGGATGTGCAGATGAGAGC 57.966 50.000 0.00 0.00 0.00 4.09
1864 2081 5.578005 ATTTTTGGATGTGCAGATGAGAG 57.422 39.130 0.00 0.00 0.00 3.20
1865 2082 5.357878 GGTATTTTTGGATGTGCAGATGAGA 59.642 40.000 0.00 0.00 0.00 3.27
1866 2083 5.125900 TGGTATTTTTGGATGTGCAGATGAG 59.874 40.000 0.00 0.00 0.00 2.90
1867 2084 5.015515 TGGTATTTTTGGATGTGCAGATGA 58.984 37.500 0.00 0.00 0.00 2.92
1868 2085 5.104374 GTGGTATTTTTGGATGTGCAGATG 58.896 41.667 0.00 0.00 0.00 2.90
1869 2086 4.142403 CGTGGTATTTTTGGATGTGCAGAT 60.142 41.667 0.00 0.00 0.00 2.90
1870 2087 3.190327 CGTGGTATTTTTGGATGTGCAGA 59.810 43.478 0.00 0.00 0.00 4.26
1871 2088 3.057596 ACGTGGTATTTTTGGATGTGCAG 60.058 43.478 0.00 0.00 0.00 4.41
1872 2089 2.887783 ACGTGGTATTTTTGGATGTGCA 59.112 40.909 0.00 0.00 0.00 4.57
1873 2090 3.190535 AGACGTGGTATTTTTGGATGTGC 59.809 43.478 0.00 0.00 0.00 4.57
1874 2091 4.215399 ACAGACGTGGTATTTTTGGATGTG 59.785 41.667 0.00 0.00 0.00 3.21
1875 2092 4.394729 ACAGACGTGGTATTTTTGGATGT 58.605 39.130 0.00 0.00 0.00 3.06
1876 2093 6.489127 TTACAGACGTGGTATTTTTGGATG 57.511 37.500 0.00 0.00 0.00 3.51
1877 2094 6.349033 GCTTTACAGACGTGGTATTTTTGGAT 60.349 38.462 0.00 0.00 0.00 3.41
1878 2095 5.049267 GCTTTACAGACGTGGTATTTTTGGA 60.049 40.000 0.00 0.00 0.00 3.53
1879 2096 5.151389 GCTTTACAGACGTGGTATTTTTGG 58.849 41.667 0.00 0.00 0.00 3.28
1880 2097 5.048991 AGGCTTTACAGACGTGGTATTTTTG 60.049 40.000 0.00 0.00 30.31 2.44
1881 2098 5.067954 AGGCTTTACAGACGTGGTATTTTT 58.932 37.500 0.00 0.00 30.31 1.94
1882 2099 4.648651 AGGCTTTACAGACGTGGTATTTT 58.351 39.130 0.00 0.00 30.31 1.82
1883 2100 4.251268 GAGGCTTTACAGACGTGGTATTT 58.749 43.478 0.00 0.00 30.31 1.40
1884 2101 3.259876 TGAGGCTTTACAGACGTGGTATT 59.740 43.478 0.00 0.00 30.31 1.89
1966 2183 4.187594 TCGCTTCGACAGTTATAGTACG 57.812 45.455 0.00 0.00 0.00 3.67
2066 2283 2.141122 AAATTGCCCGTGGTCAAGCG 62.141 55.000 0.00 0.00 0.00 4.68
2159 2376 1.206849 TGATGGCTGTCAGCGACATTA 59.793 47.619 18.44 10.87 43.62 1.90
2544 2761 1.001406 CTTCTCCTTGTCGAAGCCAGT 59.999 52.381 0.00 0.00 31.34 4.00
2591 2808 1.475403 TGAACTCCTCATCCTCGTCC 58.525 55.000 0.00 0.00 0.00 4.79
2617 2834 4.041321 TGAGCATATCATCCTTCTCCTTGG 59.959 45.833 0.00 0.00 31.12 3.61
2768 2985 0.875059 GCCTCCTCTTTTTGTCCGTG 59.125 55.000 0.00 0.00 0.00 4.94
2991 3208 3.564511 CTTTGTAACTTTGCATGTCCGG 58.435 45.455 0.00 0.00 0.00 5.14
3208 3425 6.833416 TCAATATATTGTTTGGAACAGGGGAG 59.167 38.462 21.89 0.00 43.27 4.30
3305 3522 5.685511 CACGTAAACCACAAATGAGAAAAGG 59.314 40.000 0.00 0.00 0.00 3.11
3314 3531 5.996513 TGTACATACCACGTAAACCACAAAT 59.003 36.000 0.00 0.00 0.00 2.32
3544 3762 5.452636 GGACCAGCAAATTTTGTTTCCAGTA 60.453 40.000 10.65 0.00 0.00 2.74
3803 4172 7.786030 TGGACCAATTACATTTGTTTTGAGAA 58.214 30.769 0.00 0.00 0.00 2.87
3969 4344 4.381932 CCATATCCAACTGAAGCCCAAAAC 60.382 45.833 0.00 0.00 0.00 2.43
4032 4407 4.159506 CCTGGAAAGTGGAAACAGAACAAA 59.840 41.667 0.00 0.00 44.46 2.83
4096 4471 1.128692 GCAATTGTGTGCTCCTCGTAC 59.871 52.381 7.40 0.00 41.51 3.67
4159 4534 2.223409 CGATTTGATGCCCAGATGTGTG 60.223 50.000 0.00 0.00 0.00 3.82
4372 4747 1.344763 ACAAGTGGTCCTGTCTAGTGC 59.655 52.381 0.00 0.00 0.00 4.40
4542 4917 3.963129 TCAGGAGGACACAAAAACACTT 58.037 40.909 0.00 0.00 0.00 3.16
4547 4922 6.183360 GGAAAGAAATCAGGAGGACACAAAAA 60.183 38.462 0.00 0.00 0.00 1.94
4561 4936 4.572389 GCAGATCGCTTAGGAAAGAAATCA 59.428 41.667 2.84 0.00 37.77 2.57
4608 4984 3.278574 CATCCTTGGGCGTTTCAATCTA 58.721 45.455 0.00 0.00 0.00 1.98
4694 5070 2.479837 TGACGTGATCTCCACAAACAC 58.520 47.619 0.00 0.00 45.98 3.32
4721 5098 2.360852 CTTGCCACTCCAGCAGGG 60.361 66.667 0.00 0.00 42.17 4.45
4796 5173 6.777580 AGGACAAACAAATAGTTGGAATCACT 59.222 34.615 7.93 0.00 41.19 3.41
4828 5205 3.816054 CCCGGTTAACAGGGGACT 58.184 61.111 30.25 0.00 46.01 3.85
4862 5239 3.495193 GTTACACTACTCGTTGATCGCA 58.505 45.455 0.00 0.00 39.67 5.10
4863 5240 2.850647 GGTTACACTACTCGTTGATCGC 59.149 50.000 0.00 0.00 39.67 4.58
4864 5241 4.087510 TGGTTACACTACTCGTTGATCG 57.912 45.455 0.00 0.00 41.41 3.69
4871 5248 4.261238 CCTGCTATCTGGTTACACTACTCG 60.261 50.000 0.00 0.00 0.00 4.18
4873 5250 4.402793 CACCTGCTATCTGGTTACACTACT 59.597 45.833 0.00 0.00 41.85 2.57
4874 5251 4.441634 CCACCTGCTATCTGGTTACACTAC 60.442 50.000 0.00 0.00 41.85 2.73
4899 5276 8.865590 TTTGTTCTCTTTGCCAAGTAAATAAC 57.134 30.769 0.00 0.00 0.00 1.89
4900 5277 8.141268 CCTTTGTTCTCTTTGCCAAGTAAATAA 58.859 33.333 0.00 0.00 0.00 1.40
4922 5299 1.228552 AGCGACCAACATGGCCTTT 60.229 52.632 3.32 0.00 42.67 3.11
4958 5339 6.036408 CACGACAGAATTGCAGAATATCTTGA 59.964 38.462 0.00 0.00 0.00 3.02
4959 5340 6.190264 CACGACAGAATTGCAGAATATCTTG 58.810 40.000 0.00 0.00 0.00 3.02
4960 5341 5.295292 CCACGACAGAATTGCAGAATATCTT 59.705 40.000 0.00 0.00 0.00 2.40
4968 5349 1.236616 TGGCCACGACAGAATTGCAG 61.237 55.000 0.00 0.00 0.00 4.41
4986 5367 5.248020 ACCAAGCTAGGATCCATCTAAGATG 59.752 44.000 15.82 2.43 0.00 2.90
5002 5409 9.975218 AGGATTTTTATTCTTTCTACCAAGCTA 57.025 29.630 0.00 0.00 0.00 3.32
5004 5411 9.929180 AAAGGATTTTTATTCTTTCTACCAAGC 57.071 29.630 0.00 0.00 31.62 4.01
5025 5432 4.130118 GCAGAAGAACAAGAGACAAAGGA 58.870 43.478 0.00 0.00 0.00 3.36
5030 5437 3.801638 GCAGAGCAGAAGAACAAGAGACA 60.802 47.826 0.00 0.00 0.00 3.41
5080 5487 3.297736 GGGACGGAGGGAGTATATATGG 58.702 54.545 0.00 0.00 0.00 2.74
5091 5498 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
5092 5499 3.555168 GCTCTTATATTGTGGGACGGAGG 60.555 52.174 0.00 0.00 0.00 4.30
5093 5500 3.555168 GGCTCTTATATTGTGGGACGGAG 60.555 52.174 0.00 0.00 0.00 4.63
5095 5502 2.368875 AGGCTCTTATATTGTGGGACGG 59.631 50.000 0.00 0.00 0.00 4.79
5096 5503 3.753294 AGGCTCTTATATTGTGGGACG 57.247 47.619 0.00 0.00 0.00 4.79
5097 5504 6.377146 TCAAAAAGGCTCTTATATTGTGGGAC 59.623 38.462 0.00 0.00 0.00 4.46
5098 5505 6.377146 GTCAAAAAGGCTCTTATATTGTGGGA 59.623 38.462 0.00 0.00 0.00 4.37
5099 5506 6.152661 TGTCAAAAAGGCTCTTATATTGTGGG 59.847 38.462 0.00 0.00 0.00 4.61
5100 5507 7.029563 GTGTCAAAAAGGCTCTTATATTGTGG 58.970 38.462 0.00 0.00 0.00 4.17
5101 5508 7.820648 AGTGTCAAAAAGGCTCTTATATTGTG 58.179 34.615 0.00 0.00 0.00 3.33
5102 5509 8.947115 GTAGTGTCAAAAAGGCTCTTATATTGT 58.053 33.333 0.00 0.00 0.00 2.71
5103 5510 8.946085 TGTAGTGTCAAAAAGGCTCTTATATTG 58.054 33.333 0.00 0.00 0.00 1.90
5104 5511 8.947115 GTGTAGTGTCAAAAAGGCTCTTATATT 58.053 33.333 0.00 0.00 0.00 1.28
5105 5512 8.322091 AGTGTAGTGTCAAAAAGGCTCTTATAT 58.678 33.333 0.00 0.00 0.00 0.86
5106 5513 7.676947 AGTGTAGTGTCAAAAAGGCTCTTATA 58.323 34.615 0.00 0.00 0.00 0.98
5107 5514 6.534634 AGTGTAGTGTCAAAAAGGCTCTTAT 58.465 36.000 0.00 0.00 0.00 1.73
5108 5515 5.925509 AGTGTAGTGTCAAAAAGGCTCTTA 58.074 37.500 0.00 0.00 0.00 2.10
5109 5516 4.781934 AGTGTAGTGTCAAAAAGGCTCTT 58.218 39.130 0.00 0.00 0.00 2.85
5110 5517 4.423625 AGTGTAGTGTCAAAAAGGCTCT 57.576 40.909 0.00 0.00 0.00 4.09
5111 5518 4.335594 ACAAGTGTAGTGTCAAAAAGGCTC 59.664 41.667 0.00 0.00 0.00 4.70
5112 5519 4.096382 CACAAGTGTAGTGTCAAAAAGGCT 59.904 41.667 0.00 0.00 32.44 4.58
5113 5520 4.142469 ACACAAGTGTAGTGTCAAAAAGGC 60.142 41.667 3.64 0.00 46.57 4.35
5114 5521 5.560966 ACACAAGTGTAGTGTCAAAAAGG 57.439 39.130 3.64 0.00 46.57 3.11
5123 5530 4.269123 TGCGTTTCTAACACAAGTGTAGTG 59.731 41.667 6.24 0.71 44.13 2.74
5124 5531 4.269363 GTGCGTTTCTAACACAAGTGTAGT 59.731 41.667 6.24 0.00 44.13 2.73
5125 5532 4.506654 AGTGCGTTTCTAACACAAGTGTAG 59.493 41.667 6.24 5.16 44.13 2.74
5126 5533 4.435425 AGTGCGTTTCTAACACAAGTGTA 58.565 39.130 6.24 0.00 44.13 2.90
5128 5535 3.944422 AGTGCGTTTCTAACACAAGTG 57.056 42.857 0.00 0.00 36.76 3.16
5129 5536 3.064820 CCAAGTGCGTTTCTAACACAAGT 59.935 43.478 0.00 0.00 36.76 3.16
5130 5537 3.064820 ACCAAGTGCGTTTCTAACACAAG 59.935 43.478 0.00 0.00 36.76 3.16
5131 5538 3.011119 ACCAAGTGCGTTTCTAACACAA 58.989 40.909 0.00 0.00 36.76 3.33
5132 5539 2.634600 ACCAAGTGCGTTTCTAACACA 58.365 42.857 0.00 0.00 36.76 3.72
5133 5540 3.685836 AACCAAGTGCGTTTCTAACAC 57.314 42.857 0.00 0.00 34.48 3.32
5134 5541 3.732471 GCAAACCAAGTGCGTTTCTAACA 60.732 43.478 0.00 0.00 31.11 2.41
5135 5542 2.787129 GCAAACCAAGTGCGTTTCTAAC 59.213 45.455 0.00 0.00 31.11 2.34
5136 5543 2.685897 AGCAAACCAAGTGCGTTTCTAA 59.314 40.909 0.00 0.00 46.86 2.10
5137 5544 2.289547 GAGCAAACCAAGTGCGTTTCTA 59.710 45.455 0.00 0.00 46.86 2.10
5138 5545 1.065551 GAGCAAACCAAGTGCGTTTCT 59.934 47.619 0.00 0.00 46.86 2.52
5139 5546 1.065551 AGAGCAAACCAAGTGCGTTTC 59.934 47.619 0.00 0.00 46.86 2.78
5140 5547 1.102978 AGAGCAAACCAAGTGCGTTT 58.897 45.000 0.00 0.00 46.86 3.60
5141 5548 0.381801 CAGAGCAAACCAAGTGCGTT 59.618 50.000 0.00 0.00 46.86 4.84
5142 5549 0.463654 TCAGAGCAAACCAAGTGCGT 60.464 50.000 0.00 0.00 46.86 5.24
5143 5550 0.662619 TTCAGAGCAAACCAAGTGCG 59.337 50.000 0.00 0.00 46.86 5.34
5144 5551 2.159254 TGTTTCAGAGCAAACCAAGTGC 60.159 45.455 0.00 0.00 42.55 4.40
5145 5552 3.119531 TGTGTTTCAGAGCAAACCAAGTG 60.120 43.478 0.00 0.00 35.69 3.16
5146 5553 3.088532 TGTGTTTCAGAGCAAACCAAGT 58.911 40.909 0.00 0.00 35.69 3.16
5147 5554 3.781079 TGTGTTTCAGAGCAAACCAAG 57.219 42.857 0.00 0.00 35.69 3.61
5148 5555 4.159321 TGAATGTGTTTCAGAGCAAACCAA 59.841 37.500 0.00 0.00 39.44 3.67
5149 5556 3.698539 TGAATGTGTTTCAGAGCAAACCA 59.301 39.130 0.00 0.00 39.44 3.67
5150 5557 4.305989 TGAATGTGTTTCAGAGCAAACC 57.694 40.909 0.00 0.00 39.44 3.27
5151 5558 5.343249 ACTTGAATGTGTTTCAGAGCAAAC 58.657 37.500 0.00 0.00 44.90 2.93
5152 5559 5.357878 AGACTTGAATGTGTTTCAGAGCAAA 59.642 36.000 0.00 0.00 44.90 3.68
5153 5560 4.883585 AGACTTGAATGTGTTTCAGAGCAA 59.116 37.500 0.00 0.00 44.90 3.91
5154 5561 4.454678 AGACTTGAATGTGTTTCAGAGCA 58.545 39.130 0.00 0.00 44.90 4.26
5155 5562 6.402983 CCATAGACTTGAATGTGTTTCAGAGC 60.403 42.308 0.00 0.00 44.90 4.09
5156 5563 6.875726 TCCATAGACTTGAATGTGTTTCAGAG 59.124 38.462 0.00 0.00 44.90 3.35
5157 5564 6.768483 TCCATAGACTTGAATGTGTTTCAGA 58.232 36.000 0.00 0.00 44.90 3.27
5158 5565 6.875726 TCTCCATAGACTTGAATGTGTTTCAG 59.124 38.462 0.00 0.00 44.90 3.02
5159 5566 6.768483 TCTCCATAGACTTGAATGTGTTTCA 58.232 36.000 0.00 0.00 42.62 2.69
5160 5567 7.389053 ACTTCTCCATAGACTTGAATGTGTTTC 59.611 37.037 0.00 0.00 34.72 2.78
5161 5568 7.227156 ACTTCTCCATAGACTTGAATGTGTTT 58.773 34.615 0.00 0.00 0.00 2.83
5162 5569 6.773638 ACTTCTCCATAGACTTGAATGTGTT 58.226 36.000 0.00 0.00 0.00 3.32
5163 5570 6.365970 ACTTCTCCATAGACTTGAATGTGT 57.634 37.500 0.00 0.00 0.00 3.72
5164 5571 8.954950 ATTACTTCTCCATAGACTTGAATGTG 57.045 34.615 0.00 0.00 0.00 3.21
5165 5572 8.762645 TGATTACTTCTCCATAGACTTGAATGT 58.237 33.333 0.00 0.00 0.00 2.71
5166 5573 9.605275 TTGATTACTTCTCCATAGACTTGAATG 57.395 33.333 0.00 0.00 0.00 2.67
5207 5614 5.538053 CAGTGTCTGATATACATCCCTCAGT 59.462 44.000 0.00 0.00 37.12 3.41
5212 5619 7.147983 GGATAGTCAGTGTCTGATATACATCCC 60.148 44.444 2.80 0.00 42.73 3.85
5225 5632 2.741145 ACCTCCAGGATAGTCAGTGTC 58.259 52.381 0.00 0.00 38.94 3.67
5312 5920 7.493971 ACTCTGTCTATAATCAAGCACACATTC 59.506 37.037 0.00 0.00 0.00 2.67
5328 5936 7.117285 TGATGAATGCAACTACTCTGTCTAT 57.883 36.000 0.00 0.00 0.00 1.98
5451 6114 3.261981 ACGGACGCCTCTTTTGATATT 57.738 42.857 0.00 0.00 0.00 1.28
5466 6129 3.003480 CTCCTTTGATCTTGGAACGGAC 58.997 50.000 0.00 0.00 0.00 4.79
5507 6170 2.105649 TCTGACTATGGTGTTTGTGGCA 59.894 45.455 0.00 0.00 0.00 4.92
5569 6252 3.622060 TTGGAGGCTAACCGGCAGC 62.622 63.158 18.15 18.15 42.76 5.25
5571 6254 2.058125 TTGTTGGAGGCTAACCGGCA 62.058 55.000 0.00 0.00 42.76 5.69
5616 6300 0.389948 GCCTTCAAGATGACGACGGT 60.390 55.000 0.00 0.00 0.00 4.83
5631 6315 2.436646 CTGGACGCCATTCGCCTT 60.437 61.111 0.00 0.00 43.23 4.35
5808 6495 0.752658 TGGATCCAGAGGCATACACG 59.247 55.000 11.44 0.00 0.00 4.49
5875 6562 8.836268 ATTTATTGCATATAACAAGCCATTGG 57.164 30.769 0.00 0.00 40.97 3.16
5950 6646 5.635120 CCTTATATTTTGGGAAGGAGGGAG 58.365 45.833 0.00 0.00 40.88 4.30
5951 6647 4.141018 GCCTTATATTTTGGGAAGGAGGGA 60.141 45.833 3.71 0.00 40.88 4.20
5952 6648 4.152647 GCCTTATATTTTGGGAAGGAGGG 58.847 47.826 3.71 0.00 40.88 4.30
5953 6649 3.821033 CGCCTTATATTTTGGGAAGGAGG 59.179 47.826 3.71 0.00 40.88 4.30
5954 6650 3.253432 GCGCCTTATATTTTGGGAAGGAG 59.747 47.826 0.00 1.55 40.88 3.69
5955 6651 3.219281 GCGCCTTATATTTTGGGAAGGA 58.781 45.455 0.00 0.00 40.88 3.36
5956 6652 2.031157 CGCGCCTTATATTTTGGGAAGG 60.031 50.000 0.00 0.00 41.26 3.46
5957 6653 2.875933 TCGCGCCTTATATTTTGGGAAG 59.124 45.455 0.00 0.00 0.00 3.46
5958 6654 2.920524 TCGCGCCTTATATTTTGGGAA 58.079 42.857 0.00 0.00 0.00 3.97
5959 6655 2.623878 TCGCGCCTTATATTTTGGGA 57.376 45.000 0.00 0.00 0.00 4.37
5960 6656 3.252215 TCAATCGCGCCTTATATTTTGGG 59.748 43.478 0.00 0.00 0.00 4.12
5961 6657 4.024048 AGTCAATCGCGCCTTATATTTTGG 60.024 41.667 0.00 0.00 0.00 3.28
5962 6658 5.095691 AGTCAATCGCGCCTTATATTTTG 57.904 39.130 0.00 0.00 0.00 2.44
5963 6659 5.751243 AAGTCAATCGCGCCTTATATTTT 57.249 34.783 0.00 0.00 0.00 1.82
5964 6660 5.751243 AAAGTCAATCGCGCCTTATATTT 57.249 34.783 0.00 0.00 0.00 1.40
5965 6661 5.751243 AAAAGTCAATCGCGCCTTATATT 57.249 34.783 0.00 0.00 0.00 1.28
5966 6662 5.751243 AAAAAGTCAATCGCGCCTTATAT 57.249 34.783 0.00 0.00 0.00 0.86
5967 6663 5.276489 CGTAAAAAGTCAATCGCGCCTTATA 60.276 40.000 0.00 0.00 0.00 0.98
5968 6664 4.493545 CGTAAAAAGTCAATCGCGCCTTAT 60.494 41.667 0.00 0.00 0.00 1.73
5969 6665 3.181528 CGTAAAAAGTCAATCGCGCCTTA 60.182 43.478 0.00 0.00 0.00 2.69
5970 6666 2.412325 CGTAAAAAGTCAATCGCGCCTT 60.412 45.455 0.00 0.00 0.00 4.35
5971 6667 1.127951 CGTAAAAAGTCAATCGCGCCT 59.872 47.619 0.00 0.00 0.00 5.52
5972 6668 1.520368 CGTAAAAAGTCAATCGCGCC 58.480 50.000 0.00 0.00 0.00 6.53
5973 6669 1.136169 ACCGTAAAAAGTCAATCGCGC 60.136 47.619 0.00 0.00 0.00 6.86
5974 6670 2.410730 AGACCGTAAAAAGTCAATCGCG 59.589 45.455 0.00 0.00 35.38 5.87
5975 6671 4.400036 AAGACCGTAAAAAGTCAATCGC 57.600 40.909 0.00 0.00 35.38 4.58
5976 6672 5.981174 TCAAAGACCGTAAAAAGTCAATCG 58.019 37.500 0.00 0.00 35.38 3.34
5977 6673 6.305638 GCATCAAAGACCGTAAAAAGTCAATC 59.694 38.462 0.00 0.00 35.38 2.67
5978 6674 6.149633 GCATCAAAGACCGTAAAAAGTCAAT 58.850 36.000 0.00 0.00 35.38 2.57
5979 6675 5.066634 TGCATCAAAGACCGTAAAAAGTCAA 59.933 36.000 0.00 0.00 35.38 3.18
5980 6676 4.576873 TGCATCAAAGACCGTAAAAAGTCA 59.423 37.500 0.00 0.00 35.38 3.41
5981 6677 4.909880 GTGCATCAAAGACCGTAAAAAGTC 59.090 41.667 0.00 0.00 0.00 3.01
5982 6678 4.553938 CGTGCATCAAAGACCGTAAAAAGT 60.554 41.667 0.00 0.00 0.00 2.66
5983 6679 3.906008 CGTGCATCAAAGACCGTAAAAAG 59.094 43.478 0.00 0.00 0.00 2.27
5984 6680 3.560481 TCGTGCATCAAAGACCGTAAAAA 59.440 39.130 0.00 0.00 0.00 1.94
5985 6681 3.059461 GTCGTGCATCAAAGACCGTAAAA 60.059 43.478 0.00 0.00 0.00 1.52
5986 6682 2.477375 GTCGTGCATCAAAGACCGTAAA 59.523 45.455 0.00 0.00 0.00 2.01
5987 6683 2.063266 GTCGTGCATCAAAGACCGTAA 58.937 47.619 0.00 0.00 0.00 3.18
5988 6684 1.271379 AGTCGTGCATCAAAGACCGTA 59.729 47.619 0.00 0.00 34.41 4.02
5989 6685 0.033504 AGTCGTGCATCAAAGACCGT 59.966 50.000 0.00 0.00 34.41 4.83
5990 6686 1.148310 AAGTCGTGCATCAAAGACCG 58.852 50.000 0.00 0.00 34.41 4.79
5991 6687 2.548057 TCAAAGTCGTGCATCAAAGACC 59.452 45.455 0.00 0.00 34.41 3.85
5992 6688 3.545633 GTCAAAGTCGTGCATCAAAGAC 58.454 45.455 0.00 0.00 0.00 3.01
5993 6689 2.548057 GGTCAAAGTCGTGCATCAAAGA 59.452 45.455 0.00 0.00 0.00 2.52
5994 6690 2.290367 TGGTCAAAGTCGTGCATCAAAG 59.710 45.455 0.00 0.00 0.00 2.77
5995 6691 2.032799 GTGGTCAAAGTCGTGCATCAAA 59.967 45.455 0.00 0.00 0.00 2.69
5996 6692 1.601903 GTGGTCAAAGTCGTGCATCAA 59.398 47.619 0.00 0.00 0.00 2.57
5997 6693 1.202639 AGTGGTCAAAGTCGTGCATCA 60.203 47.619 0.00 0.00 0.00 3.07
5998 6694 1.512926 AGTGGTCAAAGTCGTGCATC 58.487 50.000 0.00 0.00 0.00 3.91
5999 6695 2.831685 TAGTGGTCAAAGTCGTGCAT 57.168 45.000 0.00 0.00 0.00 3.96
6000 6696 2.605837 TTAGTGGTCAAAGTCGTGCA 57.394 45.000 0.00 0.00 0.00 4.57
6001 6697 8.758633 ATATATATTAGTGGTCAAAGTCGTGC 57.241 34.615 0.00 0.00 0.00 5.34
6002 6698 9.908152 TGATATATATTAGTGGTCAAAGTCGTG 57.092 33.333 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.