Multiple sequence alignment - TraesCS7B01G435600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G435600 chr7B 100.000 2714 0 0 1 2714 702243826 702246539 0.000000e+00 5012.0
1 TraesCS7B01G435600 chr7D 91.787 2082 84 37 687 2698 612779412 612781476 0.000000e+00 2817.0
2 TraesCS7B01G435600 chr7D 83.137 255 22 7 357 602 612779173 612779415 2.120000e-51 213.0
3 TraesCS7B01G435600 chr7A 90.587 1328 61 27 758 2034 703567293 703568607 0.000000e+00 1701.0
4 TraesCS7B01G435600 chr7A 93.388 605 37 1 1069 1673 217720262 217720863 0.000000e+00 893.0
5 TraesCS7B01G435600 chr1B 94.910 609 27 2 1069 1677 594500660 594501264 0.000000e+00 950.0
6 TraesCS7B01G435600 chr1B 94.715 246 10 1 1069 1314 547256194 547255952 1.970000e-101 379.0
7 TraesCS7B01G435600 chr3A 95.041 605 26 2 1069 1673 146191482 146192082 0.000000e+00 948.0
8 TraesCS7B01G435600 chrUn 94.545 605 28 3 1069 1673 263126409 263127008 0.000000e+00 929.0
9 TraesCS7B01G435600 chr2B 93.377 604 29 4 1069 1672 231602179 231602771 0.000000e+00 883.0
10 TraesCS7B01G435600 chr2B 94.231 104 4 2 588 689 129268265 129268368 1.010000e-34 158.0
11 TraesCS7B01G435600 chr2B 97.590 83 2 0 272 354 686549752 686549670 2.820000e-30 143.0
12 TraesCS7B01G435600 chr2B 94.444 90 3 2 272 360 713118163 713118075 1.310000e-28 137.0
13 TraesCS7B01G435600 chr2A 92.370 616 33 2 1069 1673 758111030 758110418 0.000000e+00 865.0
14 TraesCS7B01G435600 chr2A 97.872 94 2 0 602 695 181850024 181850117 2.160000e-36 163.0
15 TraesCS7B01G435600 chr5A 92.295 597 31 3 1088 1673 457537160 457536568 0.000000e+00 833.0
16 TraesCS7B01G435600 chr5A 83.495 103 17 0 482 584 670538697 670538799 2.220000e-16 97.1
17 TraesCS7B01G435600 chr5A 80.870 115 18 4 394 507 191040438 191040549 1.340000e-13 87.9
18 TraesCS7B01G435600 chr4B 96.939 98 2 1 603 699 433617347 433617250 2.160000e-36 163.0
19 TraesCS7B01G435600 chr4B 97.590 83 2 0 272 354 35550363 35550445 2.820000e-30 143.0
20 TraesCS7B01G435600 chr4B 96.386 83 3 0 272 354 453596330 453596412 1.310000e-28 137.0
21 TraesCS7B01G435600 chr4B 96.386 83 3 0 272 354 563878733 563878815 1.310000e-28 137.0
22 TraesCS7B01G435600 chr4B 96.386 83 3 0 272 354 618812901 618812819 1.310000e-28 137.0
23 TraesCS7B01G435600 chr1A 97.872 94 2 0 603 696 517414825 517414918 2.160000e-36 163.0
24 TraesCS7B01G435600 chr3B 97.849 93 2 0 597 689 435294995 435294903 7.780000e-36 161.0
25 TraesCS7B01G435600 chr6D 95.050 101 4 1 597 696 400294261 400294361 1.010000e-34 158.0
26 TraesCS7B01G435600 chr6D 91.892 111 8 1 596 705 408688699 408688809 1.300000e-33 154.0
27 TraesCS7B01G435600 chr5B 91.964 112 6 3 578 688 623100441 623100550 1.300000e-33 154.0
28 TraesCS7B01G435600 chr5B 80.110 181 33 3 404 582 611185371 611185550 6.100000e-27 132.0
29 TraesCS7B01G435600 chr6B 92.523 107 7 1 586 692 187052225 187052330 4.680000e-33 152.0
30 TraesCS7B01G435600 chr6B 96.386 83 3 0 272 354 38642427 38642509 1.310000e-28 137.0
31 TraesCS7B01G435600 chr6B 96.386 83 3 0 272 354 66391542 66391460 1.310000e-28 137.0
32 TraesCS7B01G435600 chr6B 96.386 83 3 0 272 354 120450843 120450761 1.310000e-28 137.0
33 TraesCS7B01G435600 chr5D 76.796 181 28 7 407 585 494753444 494753612 3.720000e-14 89.8
34 TraesCS7B01G435600 chr4D 90.909 44 4 0 480 523 409166617 409166574 2.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G435600 chr7B 702243826 702246539 2713 False 5012 5012 100.000 1 2714 1 chr7B.!!$F1 2713
1 TraesCS7B01G435600 chr7D 612779173 612781476 2303 False 1515 2817 87.462 357 2698 2 chr7D.!!$F1 2341
2 TraesCS7B01G435600 chr7A 703567293 703568607 1314 False 1701 1701 90.587 758 2034 1 chr7A.!!$F2 1276
3 TraesCS7B01G435600 chr7A 217720262 217720863 601 False 893 893 93.388 1069 1673 1 chr7A.!!$F1 604
4 TraesCS7B01G435600 chr1B 594500660 594501264 604 False 950 950 94.910 1069 1677 1 chr1B.!!$F1 608
5 TraesCS7B01G435600 chr3A 146191482 146192082 600 False 948 948 95.041 1069 1673 1 chr3A.!!$F1 604
6 TraesCS7B01G435600 chrUn 263126409 263127008 599 False 929 929 94.545 1069 1673 1 chrUn.!!$F1 604
7 TraesCS7B01G435600 chr2B 231602179 231602771 592 False 883 883 93.377 1069 1672 1 chr2B.!!$F2 603
8 TraesCS7B01G435600 chr2A 758110418 758111030 612 True 865 865 92.370 1069 1673 1 chr2A.!!$R1 604
9 TraesCS7B01G435600 chr5A 457536568 457537160 592 True 833 833 92.295 1088 1673 1 chr5A.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
538 540 0.023732 CTACTCGCGCGTGATGTTTG 59.976 55.0 35.09 13.49 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2315 2418 0.887933 ACAGCTAATGCAAAACGGGG 59.112 50.0 0.0 0.0 42.74 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.817616 GCATTGAGAAAAGTTGACATGTG 57.182 39.130 1.15 0.00 0.00 3.21
23 24 5.284079 GCATTGAGAAAAGTTGACATGTGT 58.716 37.500 1.15 0.00 0.00 3.72
24 25 5.750067 GCATTGAGAAAAGTTGACATGTGTT 59.250 36.000 1.15 0.00 0.00 3.32
25 26 6.917477 GCATTGAGAAAAGTTGACATGTGTTA 59.083 34.615 1.15 0.00 0.00 2.41
26 27 7.434897 GCATTGAGAAAAGTTGACATGTGTTAA 59.565 33.333 1.15 0.00 0.00 2.01
27 28 9.299963 CATTGAGAAAAGTTGACATGTGTTAAA 57.700 29.630 1.15 0.00 0.00 1.52
28 29 9.868277 ATTGAGAAAAGTTGACATGTGTTAAAA 57.132 25.926 1.15 0.00 0.00 1.52
29 30 9.698309 TTGAGAAAAGTTGACATGTGTTAAAAA 57.302 25.926 1.15 0.00 0.00 1.94
89 90 9.974980 AAAATTAAAGAAAGCCAAAGAATACGA 57.025 25.926 0.00 0.00 0.00 3.43
90 91 9.974980 AAATTAAAGAAAGCCAAAGAATACGAA 57.025 25.926 0.00 0.00 0.00 3.85
91 92 9.626045 AATTAAAGAAAGCCAAAGAATACGAAG 57.374 29.630 0.00 0.00 0.00 3.79
108 109 5.746307 ACGAAGTAAACCAAGGAAGAAAC 57.254 39.130 0.00 0.00 41.94 2.78
109 110 5.187687 ACGAAGTAAACCAAGGAAGAAACA 58.812 37.500 0.00 0.00 41.94 2.83
110 111 5.648960 ACGAAGTAAACCAAGGAAGAAACAA 59.351 36.000 0.00 0.00 41.94 2.83
111 112 6.151480 ACGAAGTAAACCAAGGAAGAAACAAA 59.849 34.615 0.00 0.00 41.94 2.83
112 113 7.030768 CGAAGTAAACCAAGGAAGAAACAAAA 58.969 34.615 0.00 0.00 0.00 2.44
113 114 7.542824 CGAAGTAAACCAAGGAAGAAACAAAAA 59.457 33.333 0.00 0.00 0.00 1.94
114 115 8.771920 AAGTAAACCAAGGAAGAAACAAAAAG 57.228 30.769 0.00 0.00 0.00 2.27
115 116 8.129496 AGTAAACCAAGGAAGAAACAAAAAGA 57.871 30.769 0.00 0.00 0.00 2.52
116 117 8.590204 AGTAAACCAAGGAAGAAACAAAAAGAA 58.410 29.630 0.00 0.00 0.00 2.52
117 118 9.210329 GTAAACCAAGGAAGAAACAAAAAGAAA 57.790 29.630 0.00 0.00 0.00 2.52
118 119 8.862325 AAACCAAGGAAGAAACAAAAAGAAAT 57.138 26.923 0.00 0.00 0.00 2.17
119 120 9.952030 AAACCAAGGAAGAAACAAAAAGAAATA 57.048 25.926 0.00 0.00 0.00 1.40
174 175 9.527566 CCAATGAAAATATAAACAAACAAAGCG 57.472 29.630 0.00 0.00 0.00 4.68
183 184 7.867445 ATAAACAAACAAAGCGTAATGAAGG 57.133 32.000 0.00 0.00 0.00 3.46
184 185 5.508200 AACAAACAAAGCGTAATGAAGGA 57.492 34.783 0.00 0.00 0.00 3.36
185 186 5.508200 ACAAACAAAGCGTAATGAAGGAA 57.492 34.783 0.00 0.00 0.00 3.36
186 187 5.897050 ACAAACAAAGCGTAATGAAGGAAA 58.103 33.333 0.00 0.00 0.00 3.13
187 188 6.334202 ACAAACAAAGCGTAATGAAGGAAAA 58.666 32.000 0.00 0.00 0.00 2.29
188 189 6.814146 ACAAACAAAGCGTAATGAAGGAAAAA 59.186 30.769 0.00 0.00 0.00 1.94
189 190 7.010091 ACAAACAAAGCGTAATGAAGGAAAAAG 59.990 33.333 0.00 0.00 0.00 2.27
190 191 6.385649 ACAAAGCGTAATGAAGGAAAAAGA 57.614 33.333 0.00 0.00 0.00 2.52
191 192 6.801575 ACAAAGCGTAATGAAGGAAAAAGAA 58.198 32.000 0.00 0.00 0.00 2.52
192 193 7.262048 ACAAAGCGTAATGAAGGAAAAAGAAA 58.738 30.769 0.00 0.00 0.00 2.52
193 194 7.762159 ACAAAGCGTAATGAAGGAAAAAGAAAA 59.238 29.630 0.00 0.00 0.00 2.29
194 195 8.764287 CAAAGCGTAATGAAGGAAAAAGAAAAT 58.236 29.630 0.00 0.00 0.00 1.82
195 196 8.520835 AAGCGTAATGAAGGAAAAAGAAAATC 57.479 30.769 0.00 0.00 0.00 2.17
196 197 7.090808 AGCGTAATGAAGGAAAAAGAAAATCC 58.909 34.615 0.00 0.00 0.00 3.01
197 198 6.866248 GCGTAATGAAGGAAAAAGAAAATCCA 59.134 34.615 0.00 0.00 35.62 3.41
198 199 7.383843 GCGTAATGAAGGAAAAAGAAAATCCAA 59.616 33.333 0.00 0.00 35.62 3.53
199 200 9.423061 CGTAATGAAGGAAAAAGAAAATCCAAT 57.577 29.630 0.00 0.00 35.62 3.16
202 203 9.498176 AATGAAGGAAAAAGAAAATCCAATGAG 57.502 29.630 0.00 0.00 35.62 2.90
203 204 8.248904 TGAAGGAAAAAGAAAATCCAATGAGA 57.751 30.769 0.00 0.00 35.62 3.27
204 205 8.703743 TGAAGGAAAAAGAAAATCCAATGAGAA 58.296 29.630 0.00 0.00 35.62 2.87
205 206 9.546428 GAAGGAAAAAGAAAATCCAATGAGAAA 57.454 29.630 0.00 0.00 35.62 2.52
206 207 9.904198 AAGGAAAAAGAAAATCCAATGAGAAAA 57.096 25.926 0.00 0.00 35.62 2.29
207 208 9.551734 AGGAAAAAGAAAATCCAATGAGAAAAG 57.448 29.630 0.00 0.00 35.62 2.27
208 209 9.546428 GGAAAAAGAAAATCCAATGAGAAAAGA 57.454 29.630 0.00 0.00 33.30 2.52
247 248 9.841880 AGGAAAATAGAAGAAAATAAACGAAGC 57.158 29.630 0.00 0.00 0.00 3.86
248 249 9.620660 GGAAAATAGAAGAAAATAAACGAAGCA 57.379 29.630 0.00 0.00 0.00 3.91
253 254 9.959749 ATAGAAGAAAATAAACGAAGCAAAACA 57.040 25.926 0.00 0.00 0.00 2.83
254 255 8.115491 AGAAGAAAATAAACGAAGCAAAACAC 57.885 30.769 0.00 0.00 0.00 3.32
255 256 7.973944 AGAAGAAAATAAACGAAGCAAAACACT 59.026 29.630 0.00 0.00 0.00 3.55
256 257 9.228636 GAAGAAAATAAACGAAGCAAAACACTA 57.771 29.630 0.00 0.00 0.00 2.74
257 258 8.782533 AGAAAATAAACGAAGCAAAACACTAG 57.217 30.769 0.00 0.00 0.00 2.57
258 259 8.403236 AGAAAATAAACGAAGCAAAACACTAGT 58.597 29.630 0.00 0.00 0.00 2.57
259 260 7.908193 AAATAAACGAAGCAAAACACTAGTG 57.092 32.000 21.44 21.44 0.00 2.74
260 261 3.963383 AACGAAGCAAAACACTAGTGG 57.037 42.857 26.12 9.92 34.19 4.00
261 262 2.218603 ACGAAGCAAAACACTAGTGGG 58.781 47.619 26.12 13.50 34.19 4.61
262 263 2.158871 ACGAAGCAAAACACTAGTGGGA 60.159 45.455 26.12 0.00 34.19 4.37
263 264 2.480419 CGAAGCAAAACACTAGTGGGAG 59.520 50.000 26.12 13.80 34.19 4.30
264 265 2.568623 AGCAAAACACTAGTGGGAGG 57.431 50.000 26.12 13.83 34.19 4.30
265 266 1.073923 AGCAAAACACTAGTGGGAGGG 59.926 52.381 26.12 12.52 34.19 4.30
266 267 1.073284 GCAAAACACTAGTGGGAGGGA 59.927 52.381 26.12 0.00 34.19 4.20
267 268 2.779506 CAAAACACTAGTGGGAGGGAC 58.220 52.381 26.12 0.00 34.19 4.46
268 269 2.372172 CAAAACACTAGTGGGAGGGACT 59.628 50.000 26.12 0.00 36.46 3.85
269 270 1.645710 AACACTAGTGGGAGGGACTG 58.354 55.000 26.12 0.00 34.18 3.51
270 271 0.252284 ACACTAGTGGGAGGGACTGG 60.252 60.000 26.12 0.00 34.18 4.00
271 272 1.306226 ACTAGTGGGAGGGACTGGC 60.306 63.158 0.00 0.00 41.55 4.85
272 273 1.306141 CTAGTGGGAGGGACTGGCA 60.306 63.158 0.00 0.00 41.55 4.92
273 274 0.909610 CTAGTGGGAGGGACTGGCAA 60.910 60.000 0.00 0.00 41.55 4.52
274 275 0.253160 TAGTGGGAGGGACTGGCAAT 60.253 55.000 0.00 0.00 41.55 3.56
275 276 1.142688 AGTGGGAGGGACTGGCAATT 61.143 55.000 0.00 0.00 41.55 2.32
276 277 0.251787 GTGGGAGGGACTGGCAATTT 60.252 55.000 0.00 0.00 41.55 1.82
277 278 0.251742 TGGGAGGGACTGGCAATTTG 60.252 55.000 0.00 0.00 41.55 2.32
278 279 0.039618 GGGAGGGACTGGCAATTTGA 59.960 55.000 0.00 0.00 41.55 2.69
279 280 1.467920 GGAGGGACTGGCAATTTGAG 58.532 55.000 0.00 0.00 41.55 3.02
280 281 0.813821 GAGGGACTGGCAATTTGAGC 59.186 55.000 0.00 0.00 41.55 4.26
281 282 0.112995 AGGGACTGGCAATTTGAGCA 59.887 50.000 0.00 0.00 37.18 4.26
282 283 0.968405 GGGACTGGCAATTTGAGCAA 59.032 50.000 0.00 0.00 0.00 3.91
283 284 1.337167 GGGACTGGCAATTTGAGCAAC 60.337 52.381 0.00 0.00 0.00 4.17
284 285 1.615392 GGACTGGCAATTTGAGCAACT 59.385 47.619 0.00 0.00 0.00 3.16
285 286 2.352127 GGACTGGCAATTTGAGCAACTC 60.352 50.000 0.00 0.00 0.00 3.01
286 287 2.294233 GACTGGCAATTTGAGCAACTCA 59.706 45.455 0.00 0.00 38.87 3.41
287 288 2.694628 ACTGGCAATTTGAGCAACTCAA 59.305 40.909 5.94 5.94 46.93 3.02
295 296 2.928801 TGAGCAACTCAACTAAGGCA 57.071 45.000 0.00 0.00 37.57 4.75
296 297 3.207265 TGAGCAACTCAACTAAGGCAA 57.793 42.857 0.00 0.00 37.57 4.52
297 298 3.141398 TGAGCAACTCAACTAAGGCAAG 58.859 45.455 0.00 0.00 37.57 4.01
298 299 3.142174 GAGCAACTCAACTAAGGCAAGT 58.858 45.455 0.00 0.00 0.00 3.16
299 300 2.880890 AGCAACTCAACTAAGGCAAGTG 59.119 45.455 0.00 0.00 0.00 3.16
300 301 2.618709 GCAACTCAACTAAGGCAAGTGT 59.381 45.455 0.00 0.00 0.00 3.55
301 302 3.548818 GCAACTCAACTAAGGCAAGTGTG 60.549 47.826 0.00 0.00 0.00 3.82
302 303 2.851195 ACTCAACTAAGGCAAGTGTGG 58.149 47.619 0.00 0.00 0.00 4.17
313 314 3.799137 GCAAGTGTGGCAAAAATCATG 57.201 42.857 0.00 0.00 0.00 3.07
314 315 3.132925 GCAAGTGTGGCAAAAATCATGT 58.867 40.909 0.00 0.00 0.00 3.21
315 316 3.059461 GCAAGTGTGGCAAAAATCATGTG 60.059 43.478 0.00 0.00 0.00 3.21
316 317 3.389925 AGTGTGGCAAAAATCATGTGG 57.610 42.857 0.00 0.00 0.00 4.17
317 318 1.799994 GTGTGGCAAAAATCATGTGGC 59.200 47.619 0.00 0.00 38.26 5.01
318 319 1.415289 TGTGGCAAAAATCATGTGGCA 59.585 42.857 5.53 5.53 44.57 4.92
319 320 2.924757 TGGCAAAAATCATGTGGCAA 57.075 40.000 6.99 0.00 43.91 4.52
320 321 3.420300 TGGCAAAAATCATGTGGCAAT 57.580 38.095 6.99 0.00 43.91 3.56
321 322 4.548451 TGGCAAAAATCATGTGGCAATA 57.452 36.364 6.99 0.00 43.91 1.90
322 323 5.100344 TGGCAAAAATCATGTGGCAATAT 57.900 34.783 6.99 0.00 43.91 1.28
323 324 6.231258 TGGCAAAAATCATGTGGCAATATA 57.769 33.333 6.99 0.00 43.91 0.86
324 325 6.828788 TGGCAAAAATCATGTGGCAATATAT 58.171 32.000 6.99 0.00 43.91 0.86
325 326 6.706716 TGGCAAAAATCATGTGGCAATATATG 59.293 34.615 6.99 0.00 43.91 1.78
326 327 6.148150 GGCAAAAATCATGTGGCAATATATGG 59.852 38.462 0.00 0.00 37.73 2.74
327 328 6.707161 GCAAAAATCATGTGGCAATATATGGT 59.293 34.615 0.00 0.00 0.00 3.55
328 329 7.871973 GCAAAAATCATGTGGCAATATATGGTA 59.128 33.333 0.00 0.00 0.00 3.25
329 330 9.761504 CAAAAATCATGTGGCAATATATGGTAA 57.238 29.630 0.00 0.00 0.00 2.85
334 335 9.932207 ATCATGTGGCAATATATGGTAAAAATG 57.068 29.630 0.00 0.00 0.00 2.32
335 336 8.366401 TCATGTGGCAATATATGGTAAAAATGG 58.634 33.333 0.00 0.00 0.00 3.16
336 337 7.667575 TGTGGCAATATATGGTAAAAATGGT 57.332 32.000 0.00 0.00 0.00 3.55
337 338 7.721402 TGTGGCAATATATGGTAAAAATGGTC 58.279 34.615 0.00 0.00 0.00 4.02
338 339 7.343057 TGTGGCAATATATGGTAAAAATGGTCA 59.657 33.333 0.00 0.00 0.00 4.02
339 340 7.651704 GTGGCAATATATGGTAAAAATGGTCAC 59.348 37.037 0.00 0.00 0.00 3.67
340 341 7.343057 TGGCAATATATGGTAAAAATGGTCACA 59.657 33.333 0.00 0.00 0.00 3.58
341 342 8.200792 GGCAATATATGGTAAAAATGGTCACAA 58.799 33.333 0.00 0.00 0.00 3.33
342 343 9.762933 GCAATATATGGTAAAAATGGTCACAAT 57.237 29.630 0.00 0.00 0.00 2.71
345 346 7.969690 ATATGGTAAAAATGGTCACAATCCA 57.030 32.000 0.00 0.00 39.41 3.41
346 347 6.678568 ATGGTAAAAATGGTCACAATCCAA 57.321 33.333 0.00 0.00 38.52 3.53
347 348 6.485830 TGGTAAAAATGGTCACAATCCAAA 57.514 33.333 0.00 0.00 38.52 3.28
348 349 6.284459 TGGTAAAAATGGTCACAATCCAAAC 58.716 36.000 0.00 0.00 38.52 2.93
349 350 6.127054 TGGTAAAAATGGTCACAATCCAAACA 60.127 34.615 0.00 0.00 38.52 2.83
350 351 6.763610 GGTAAAAATGGTCACAATCCAAACAA 59.236 34.615 0.00 0.00 38.52 2.83
351 352 6.676237 AAAAATGGTCACAATCCAAACAAC 57.324 33.333 0.00 0.00 38.52 3.32
352 353 4.335400 AATGGTCACAATCCAAACAACC 57.665 40.909 0.00 0.00 38.52 3.77
353 354 2.035632 TGGTCACAATCCAAACAACCC 58.964 47.619 0.00 0.00 31.50 4.11
354 355 2.316108 GGTCACAATCCAAACAACCCT 58.684 47.619 0.00 0.00 0.00 4.34
355 356 3.117474 TGGTCACAATCCAAACAACCCTA 60.117 43.478 0.00 0.00 31.50 3.53
361 362 5.393866 ACAATCCAAACAACCCTAGATTGT 58.606 37.500 9.69 9.69 45.36 2.71
373 374 7.175119 ACAACCCTAGATTGTTTAAGAAGCTTC 59.825 37.037 19.11 19.11 36.93 3.86
386 387 9.989869 GTTTAAGAAGCTTCATATTCTTGTACC 57.010 33.333 27.57 0.00 43.69 3.34
425 426 9.807649 ATGAAAATATAAAGGTCAACATGCTTC 57.192 29.630 0.00 0.00 0.00 3.86
426 427 8.250332 TGAAAATATAAAGGTCAACATGCTTCC 58.750 33.333 0.00 0.00 0.00 3.46
427 428 7.716799 AAATATAAAGGTCAACATGCTTCCA 57.283 32.000 0.00 0.00 0.00 3.53
428 429 6.699575 ATATAAAGGTCAACATGCTTCCAC 57.300 37.500 0.00 0.00 0.00 4.02
429 430 2.363306 AAGGTCAACATGCTTCCACA 57.637 45.000 0.00 0.00 0.00 4.17
430 431 1.609208 AGGTCAACATGCTTCCACAC 58.391 50.000 0.00 0.00 0.00 3.82
431 432 1.133823 AGGTCAACATGCTTCCACACA 60.134 47.619 0.00 0.00 0.00 3.72
432 433 1.001378 GGTCAACATGCTTCCACACAC 60.001 52.381 0.00 0.00 0.00 3.82
433 434 1.675483 GTCAACATGCTTCCACACACA 59.325 47.619 0.00 0.00 0.00 3.72
434 435 1.675483 TCAACATGCTTCCACACACAC 59.325 47.619 0.00 0.00 0.00 3.82
438 439 0.112995 ATGCTTCCACACACACCCAT 59.887 50.000 0.00 0.00 0.00 4.00
455 456 7.083875 ACACCCATGTGAATAGTAAAATTCG 57.916 36.000 0.00 0.00 45.76 3.34
525 527 2.233922 ACTTGGACCACCATTCTACTCG 59.766 50.000 0.00 0.00 46.34 4.18
527 529 0.527817 GGACCACCATTCTACTCGCG 60.528 60.000 0.00 0.00 35.97 5.87
528 530 1.146358 GACCACCATTCTACTCGCGC 61.146 60.000 0.00 0.00 0.00 6.86
538 540 0.023732 CTACTCGCGCGTGATGTTTG 59.976 55.000 35.09 13.49 0.00 2.93
545 547 0.586319 CGCGTGATGTTTGGTGAAGT 59.414 50.000 0.00 0.00 0.00 3.01
559 561 1.274167 GTGAAGTACCGACACCCATGA 59.726 52.381 0.00 0.00 0.00 3.07
565 574 3.964688 AGTACCGACACCCATGATATTCA 59.035 43.478 0.00 0.00 0.00 2.57
568 577 5.152623 ACCGACACCCATGATATTCATAG 57.847 43.478 0.00 0.00 34.28 2.23
573 582 6.146184 CGACACCCATGATATTCATAGTGAAC 59.854 42.308 18.95 13.49 40.18 3.18
608 617 7.584122 TCAAACATCACTACTATCTACTCCC 57.416 40.000 0.00 0.00 0.00 4.30
609 618 7.355101 TCAAACATCACTACTATCTACTCCCT 58.645 38.462 0.00 0.00 0.00 4.20
610 619 7.502895 TCAAACATCACTACTATCTACTCCCTC 59.497 40.741 0.00 0.00 0.00 4.30
611 620 5.883180 ACATCACTACTATCTACTCCCTCC 58.117 45.833 0.00 0.00 0.00 4.30
612 621 4.620589 TCACTACTATCTACTCCCTCCG 57.379 50.000 0.00 0.00 0.00 4.63
613 622 3.972638 TCACTACTATCTACTCCCTCCGT 59.027 47.826 0.00 0.00 0.00 4.69
614 623 4.411540 TCACTACTATCTACTCCCTCCGTT 59.588 45.833 0.00 0.00 0.00 4.44
615 624 4.756135 CACTACTATCTACTCCCTCCGTTC 59.244 50.000 0.00 0.00 0.00 3.95
616 625 3.226682 ACTATCTACTCCCTCCGTTCC 57.773 52.381 0.00 0.00 0.00 3.62
617 626 2.512896 ACTATCTACTCCCTCCGTTCCA 59.487 50.000 0.00 0.00 0.00 3.53
618 627 2.544844 ATCTACTCCCTCCGTTCCAA 57.455 50.000 0.00 0.00 0.00 3.53
619 628 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
620 629 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
621 630 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
622 631 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
623 632 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
624 633 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
625 634 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
626 635 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
627 636 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
628 637 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
629 638 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
630 639 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
631 640 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
632 641 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
633 642 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
634 643 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
635 644 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
636 645 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
637 646 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
638 647 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
639 648 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
640 649 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
641 650 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
642 651 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
643 652 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
644 653 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
645 654 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
646 655 5.705905 AGATGACCCAACTTTGTACTAAAGC 59.294 40.000 14.06 0.00 0.00 3.51
647 656 5.043737 TGACCCAACTTTGTACTAAAGCT 57.956 39.130 14.06 3.86 0.00 3.74
648 657 6.177310 TGACCCAACTTTGTACTAAAGCTA 57.823 37.500 14.06 0.00 0.00 3.32
649 658 6.228258 TGACCCAACTTTGTACTAAAGCTAG 58.772 40.000 14.06 0.00 0.00 3.42
650 659 6.183361 TGACCCAACTTTGTACTAAAGCTAGT 60.183 38.462 14.06 0.00 41.43 2.57
651 660 7.015487 TGACCCAACTTTGTACTAAAGCTAGTA 59.985 37.037 14.06 0.00 39.23 1.82
652 661 7.914859 ACCCAACTTTGTACTAAAGCTAGTAT 58.085 34.615 14.06 0.00 41.57 2.12
653 662 9.039165 ACCCAACTTTGTACTAAAGCTAGTATA 57.961 33.333 14.06 0.00 41.57 1.47
654 663 9.880157 CCCAACTTTGTACTAAAGCTAGTATAA 57.120 33.333 14.06 1.34 41.57 0.98
661 670 9.880157 TTGTACTAAAGCTAGTATAAAGTTGGG 57.120 33.333 3.99 0.00 41.57 4.12
662 671 9.039165 TGTACTAAAGCTAGTATAAAGTTGGGT 57.961 33.333 0.00 0.00 41.57 4.51
663 672 9.526713 GTACTAAAGCTAGTATAAAGTTGGGTC 57.473 37.037 0.00 0.00 41.57 4.46
664 673 8.142485 ACTAAAGCTAGTATAAAGTTGGGTCA 57.858 34.615 0.00 0.00 36.56 4.02
665 674 8.769359 ACTAAAGCTAGTATAAAGTTGGGTCAT 58.231 33.333 0.00 0.00 36.56 3.06
666 675 9.262358 CTAAAGCTAGTATAAAGTTGGGTCATC 57.738 37.037 0.00 0.00 0.00 2.92
667 676 7.439108 AAGCTAGTATAAAGTTGGGTCATCT 57.561 36.000 0.00 0.00 0.00 2.90
668 677 8.548880 AAGCTAGTATAAAGTTGGGTCATCTA 57.451 34.615 0.00 0.00 0.00 1.98
669 678 8.728596 AGCTAGTATAAAGTTGGGTCATCTAT 57.271 34.615 0.00 0.00 0.00 1.98
670 679 9.160412 AGCTAGTATAAAGTTGGGTCATCTATT 57.840 33.333 0.00 0.00 0.00 1.73
671 680 9.780186 GCTAGTATAAAGTTGGGTCATCTATTT 57.220 33.333 0.00 0.00 0.00 1.40
674 683 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
675 684 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
676 685 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
677 686 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
678 687 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
679 688 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
680 689 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
681 690 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
682 691 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
683 692 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
684 693 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
685 694 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
693 702 3.112263 TGGAACGGAGGGAGTATCAAAT 58.888 45.455 0.00 0.00 36.25 2.32
698 707 4.287552 ACGGAGGGAGTATCAAATAGTGT 58.712 43.478 0.00 0.00 36.25 3.55
699 708 4.715297 ACGGAGGGAGTATCAAATAGTGTT 59.285 41.667 0.00 0.00 36.25 3.32
776 788 2.154198 TGTTCGTGAAACTTCATACGCG 59.846 45.455 3.53 3.53 39.73 6.01
784 796 8.197458 CGTGAAACTTCATACGCGAGTATACG 62.197 46.154 15.93 11.17 45.66 3.06
796 808 2.159734 CGAGTATACGGGTCGACTATGC 60.160 54.545 16.46 9.15 35.70 3.14
798 810 2.551459 AGTATACGGGTCGACTATGCAC 59.449 50.000 16.46 7.03 0.00 4.57
803 815 0.314302 GGGTCGACTATGCACGCTAT 59.686 55.000 16.46 0.00 0.00 2.97
890 916 6.964370 TGTTCATTATATTCGCGTCCTTTTTG 59.036 34.615 5.77 0.00 0.00 2.44
989 1039 4.344865 GGCCCAACTCCCTCGCAA 62.345 66.667 0.00 0.00 0.00 4.85
990 1040 2.747855 GCCCAACTCCCTCGCAAG 60.748 66.667 0.00 0.00 0.00 4.01
991 1041 2.747855 CCCAACTCCCTCGCAAGC 60.748 66.667 0.00 0.00 37.18 4.01
1003 1053 2.040544 CGCAAGCCCCGAAAGATGT 61.041 57.895 0.00 0.00 0.00 3.06
1032 1082 2.336809 GTATCGCTCCGGCTCCTG 59.663 66.667 0.00 0.00 36.09 3.86
1033 1083 3.606662 TATCGCTCCGGCTCCTGC 61.607 66.667 0.00 0.00 36.09 4.85
1707 1769 1.743252 GCTTCTTGGAGCGTGGGAG 60.743 63.158 0.00 0.00 32.23 4.30
1776 1849 3.769739 AAAGGCAGGTGAAATTTTCCC 57.230 42.857 6.68 7.44 0.00 3.97
1786 1859 5.648092 AGGTGAAATTTTCCCGAGATTGTAG 59.352 40.000 6.68 0.00 0.00 2.74
1787 1860 5.646360 GGTGAAATTTTCCCGAGATTGTAGA 59.354 40.000 6.68 0.00 0.00 2.59
1789 1862 7.148069 GGTGAAATTTTCCCGAGATTGTAGAAT 60.148 37.037 6.68 0.00 0.00 2.40
1790 1863 8.244113 GTGAAATTTTCCCGAGATTGTAGAATT 58.756 33.333 6.68 0.00 0.00 2.17
1791 1864 8.802267 TGAAATTTTCCCGAGATTGTAGAATTT 58.198 29.630 6.68 0.00 0.00 1.82
1792 1865 8.986477 AAATTTTCCCGAGATTGTAGAATTTG 57.014 30.769 0.00 0.00 0.00 2.32
1795 1868 8.624367 TTTTCCCGAGATTGTAGAATTTGTTA 57.376 30.769 0.00 0.00 0.00 2.41
1852 1929 6.772233 TCCCCCAAGTTAAAGTTAGTGTTAAC 59.228 38.462 0.00 0.00 39.46 2.01
1931 2024 1.757118 TCAAGAGGCCTATTCGAGTGG 59.243 52.381 10.38 0.00 0.00 4.00
1978 2071 6.032094 CACATGAGAACTATTTTGTGATGCC 58.968 40.000 0.00 0.00 37.28 4.40
1979 2072 5.711506 ACATGAGAACTATTTTGTGATGCCA 59.288 36.000 0.00 0.00 0.00 4.92
1994 2093 5.069648 TGTGATGCCAAAAAGAACCATTGTA 59.930 36.000 0.00 0.00 0.00 2.41
2019 2118 2.280797 TGTGCCAGGCGTCAGAAC 60.281 61.111 7.03 0.00 0.00 3.01
2037 2140 6.639671 CAGAACTATCTGTTGCTGTAGAAC 57.360 41.667 0.00 0.00 46.60 3.01
2051 2154 8.565416 GTTGCTGTAGAACTTAGGTTTGTATTT 58.435 33.333 0.00 0.00 35.58 1.40
2052 2155 8.094798 TGCTGTAGAACTTAGGTTTGTATTTG 57.905 34.615 0.00 0.00 35.58 2.32
2078 2181 3.335579 ACTTAGATTCGTGAAACTGGCC 58.664 45.455 0.00 0.00 31.75 5.36
2081 2184 0.442699 GATTCGTGAAACTGGCCGAC 59.557 55.000 0.00 0.00 31.75 4.79
2137 2240 6.811253 ATCTCGTATCCACTCTATGAGAAC 57.189 41.667 6.40 0.00 41.91 3.01
2186 2289 9.406828 CTTCGTAATGAGATATGGTTTATCGAA 57.593 33.333 0.00 0.00 0.00 3.71
2315 2418 7.518529 GCAAAGTGAACACCTAGTTAAGAGTTC 60.519 40.741 1.11 0.00 41.51 3.01
2345 2448 2.544267 GCATTAGCTGTCCGTACAATCC 59.456 50.000 0.00 0.00 34.49 3.01
2363 2466 3.444792 TCCCCCTTTTGGTTTACTAGC 57.555 47.619 0.00 0.00 38.10 3.42
2365 2468 3.089284 CCCCCTTTTGGTTTACTAGCTG 58.911 50.000 0.00 0.00 38.10 4.24
2392 2495 5.116180 CCATAATCCTCGCTGAAACACTTA 58.884 41.667 0.00 0.00 0.00 2.24
2394 2497 6.293081 CCATAATCCTCGCTGAAACACTTATG 60.293 42.308 0.00 0.00 0.00 1.90
2409 2512 4.260170 CACTTATGCTGCCTCTTCTCTTT 58.740 43.478 0.00 0.00 0.00 2.52
2457 2572 3.885297 ACACATCTTGTTCTGGGTTCTTG 59.115 43.478 0.00 0.00 33.09 3.02
2522 2637 3.508793 CCATTGCACTCTCACAATTTCCT 59.491 43.478 0.00 0.00 34.32 3.36
2629 2744 0.249911 AAGGACTGACAGCACCGAAC 60.250 55.000 1.25 0.00 0.00 3.95
2698 2813 3.438781 GGCCATGAAAATGTCTCACGTTA 59.561 43.478 0.00 0.00 0.00 3.18
2699 2814 4.437390 GGCCATGAAAATGTCTCACGTTAG 60.437 45.833 0.00 0.00 0.00 2.34
2700 2815 4.154195 GCCATGAAAATGTCTCACGTTAGT 59.846 41.667 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.284079 ACACATGTCAACTTTTCTCAATGC 58.716 37.500 0.00 0.00 0.00 3.56
1 2 8.854979 TTAACACATGTCAACTTTTCTCAATG 57.145 30.769 0.00 0.00 0.00 2.82
2 3 9.868277 TTTTAACACATGTCAACTTTTCTCAAT 57.132 25.926 0.00 0.00 0.00 2.57
3 4 9.698309 TTTTTAACACATGTCAACTTTTCTCAA 57.302 25.926 0.00 0.00 0.00 3.02
63 64 9.974980 TCGTATTCTTTGGCTTTCTTTAATTTT 57.025 25.926 0.00 0.00 0.00 1.82
64 65 9.974980 TTCGTATTCTTTGGCTTTCTTTAATTT 57.025 25.926 0.00 0.00 0.00 1.82
65 66 9.626045 CTTCGTATTCTTTGGCTTTCTTTAATT 57.374 29.630 0.00 0.00 0.00 1.40
66 67 8.793592 ACTTCGTATTCTTTGGCTTTCTTTAAT 58.206 29.630 0.00 0.00 0.00 1.40
67 68 8.161699 ACTTCGTATTCTTTGGCTTTCTTTAA 57.838 30.769 0.00 0.00 0.00 1.52
68 69 7.739498 ACTTCGTATTCTTTGGCTTTCTTTA 57.261 32.000 0.00 0.00 0.00 1.85
69 70 6.635030 ACTTCGTATTCTTTGGCTTTCTTT 57.365 33.333 0.00 0.00 0.00 2.52
70 71 7.739498 TTACTTCGTATTCTTTGGCTTTCTT 57.261 32.000 0.00 0.00 0.00 2.52
71 72 7.308408 GGTTTACTTCGTATTCTTTGGCTTTCT 60.308 37.037 0.00 0.00 0.00 2.52
72 73 6.800408 GGTTTACTTCGTATTCTTTGGCTTTC 59.200 38.462 0.00 0.00 0.00 2.62
73 74 6.263617 TGGTTTACTTCGTATTCTTTGGCTTT 59.736 34.615 0.00 0.00 0.00 3.51
74 75 5.766174 TGGTTTACTTCGTATTCTTTGGCTT 59.234 36.000 0.00 0.00 0.00 4.35
75 76 5.310451 TGGTTTACTTCGTATTCTTTGGCT 58.690 37.500 0.00 0.00 0.00 4.75
76 77 5.616488 TGGTTTACTTCGTATTCTTTGGC 57.384 39.130 0.00 0.00 0.00 4.52
77 78 6.428771 TCCTTGGTTTACTTCGTATTCTTTGG 59.571 38.462 0.00 0.00 0.00 3.28
78 79 7.429636 TCCTTGGTTTACTTCGTATTCTTTG 57.570 36.000 0.00 0.00 0.00 2.77
79 80 7.935210 TCTTCCTTGGTTTACTTCGTATTCTTT 59.065 33.333 0.00 0.00 0.00 2.52
80 81 7.447594 TCTTCCTTGGTTTACTTCGTATTCTT 58.552 34.615 0.00 0.00 0.00 2.52
81 82 7.001099 TCTTCCTTGGTTTACTTCGTATTCT 57.999 36.000 0.00 0.00 0.00 2.40
82 83 7.662604 TTCTTCCTTGGTTTACTTCGTATTC 57.337 36.000 0.00 0.00 0.00 1.75
83 84 7.499895 TGTTTCTTCCTTGGTTTACTTCGTATT 59.500 33.333 0.00 0.00 0.00 1.89
84 85 6.993902 TGTTTCTTCCTTGGTTTACTTCGTAT 59.006 34.615 0.00 0.00 0.00 3.06
85 86 6.347696 TGTTTCTTCCTTGGTTTACTTCGTA 58.652 36.000 0.00 0.00 0.00 3.43
86 87 5.187687 TGTTTCTTCCTTGGTTTACTTCGT 58.812 37.500 0.00 0.00 0.00 3.85
87 88 5.744666 TGTTTCTTCCTTGGTTTACTTCG 57.255 39.130 0.00 0.00 0.00 3.79
88 89 8.766000 TTTTTGTTTCTTCCTTGGTTTACTTC 57.234 30.769 0.00 0.00 0.00 3.01
89 90 8.590204 TCTTTTTGTTTCTTCCTTGGTTTACTT 58.410 29.630 0.00 0.00 0.00 2.24
90 91 8.129496 TCTTTTTGTTTCTTCCTTGGTTTACT 57.871 30.769 0.00 0.00 0.00 2.24
91 92 8.766000 TTCTTTTTGTTTCTTCCTTGGTTTAC 57.234 30.769 0.00 0.00 0.00 2.01
92 93 9.952030 ATTTCTTTTTGTTTCTTCCTTGGTTTA 57.048 25.926 0.00 0.00 0.00 2.01
93 94 8.862325 ATTTCTTTTTGTTTCTTCCTTGGTTT 57.138 26.923 0.00 0.00 0.00 3.27
148 149 9.527566 CGCTTTGTTTGTTTATATTTTCATTGG 57.472 29.630 0.00 0.00 0.00 3.16
157 158 9.567848 CCTTCATTACGCTTTGTTTGTTTATAT 57.432 29.630 0.00 0.00 0.00 0.86
158 159 8.784994 TCCTTCATTACGCTTTGTTTGTTTATA 58.215 29.630 0.00 0.00 0.00 0.98
159 160 7.653647 TCCTTCATTACGCTTTGTTTGTTTAT 58.346 30.769 0.00 0.00 0.00 1.40
160 161 7.028926 TCCTTCATTACGCTTTGTTTGTTTA 57.971 32.000 0.00 0.00 0.00 2.01
161 162 5.897050 TCCTTCATTACGCTTTGTTTGTTT 58.103 33.333 0.00 0.00 0.00 2.83
162 163 5.508200 TCCTTCATTACGCTTTGTTTGTT 57.492 34.783 0.00 0.00 0.00 2.83
163 164 5.508200 TTCCTTCATTACGCTTTGTTTGT 57.492 34.783 0.00 0.00 0.00 2.83
164 165 6.820470 TTTTCCTTCATTACGCTTTGTTTG 57.180 33.333 0.00 0.00 0.00 2.93
165 166 7.262048 TCTTTTTCCTTCATTACGCTTTGTTT 58.738 30.769 0.00 0.00 0.00 2.83
166 167 6.801575 TCTTTTTCCTTCATTACGCTTTGTT 58.198 32.000 0.00 0.00 0.00 2.83
167 168 6.385649 TCTTTTTCCTTCATTACGCTTTGT 57.614 33.333 0.00 0.00 0.00 2.83
168 169 7.692908 TTTCTTTTTCCTTCATTACGCTTTG 57.307 32.000 0.00 0.00 0.00 2.77
169 170 8.887036 ATTTTCTTTTTCCTTCATTACGCTTT 57.113 26.923 0.00 0.00 0.00 3.51
170 171 7.598869 GGATTTTCTTTTTCCTTCATTACGCTT 59.401 33.333 0.00 0.00 0.00 4.68
171 172 7.090808 GGATTTTCTTTTTCCTTCATTACGCT 58.909 34.615 0.00 0.00 0.00 5.07
172 173 6.866248 TGGATTTTCTTTTTCCTTCATTACGC 59.134 34.615 0.00 0.00 0.00 4.42
173 174 8.810652 TTGGATTTTCTTTTTCCTTCATTACG 57.189 30.769 0.00 0.00 0.00 3.18
176 177 9.498176 CTCATTGGATTTTCTTTTTCCTTCATT 57.502 29.630 0.00 0.00 0.00 2.57
177 178 8.873144 TCTCATTGGATTTTCTTTTTCCTTCAT 58.127 29.630 0.00 0.00 0.00 2.57
178 179 8.248904 TCTCATTGGATTTTCTTTTTCCTTCA 57.751 30.769 0.00 0.00 0.00 3.02
179 180 9.546428 TTTCTCATTGGATTTTCTTTTTCCTTC 57.454 29.630 0.00 0.00 0.00 3.46
180 181 9.904198 TTTTCTCATTGGATTTTCTTTTTCCTT 57.096 25.926 0.00 0.00 0.00 3.36
181 182 9.551734 CTTTTCTCATTGGATTTTCTTTTTCCT 57.448 29.630 0.00 0.00 0.00 3.36
182 183 9.546428 TCTTTTCTCATTGGATTTTCTTTTTCC 57.454 29.630 0.00 0.00 0.00 3.13
221 222 9.841880 GCTTCGTTTATTTTCTTCTATTTTCCT 57.158 29.630 0.00 0.00 0.00 3.36
222 223 9.620660 TGCTTCGTTTATTTTCTTCTATTTTCC 57.379 29.630 0.00 0.00 0.00 3.13
227 228 9.959749 TGTTTTGCTTCGTTTATTTTCTTCTAT 57.040 25.926 0.00 0.00 0.00 1.98
228 229 9.228636 GTGTTTTGCTTCGTTTATTTTCTTCTA 57.771 29.630 0.00 0.00 0.00 2.10
229 230 7.973944 AGTGTTTTGCTTCGTTTATTTTCTTCT 59.026 29.630 0.00 0.00 0.00 2.85
230 231 8.115491 AGTGTTTTGCTTCGTTTATTTTCTTC 57.885 30.769 0.00 0.00 0.00 2.87
231 232 9.233232 CTAGTGTTTTGCTTCGTTTATTTTCTT 57.767 29.630 0.00 0.00 0.00 2.52
232 233 8.403236 ACTAGTGTTTTGCTTCGTTTATTTTCT 58.597 29.630 0.00 0.00 0.00 2.52
233 234 8.469125 CACTAGTGTTTTGCTTCGTTTATTTTC 58.531 33.333 15.06 0.00 0.00 2.29
234 235 7.434013 CCACTAGTGTTTTGCTTCGTTTATTTT 59.566 33.333 21.18 0.00 0.00 1.82
235 236 6.915843 CCACTAGTGTTTTGCTTCGTTTATTT 59.084 34.615 21.18 0.00 0.00 1.40
236 237 6.435428 CCACTAGTGTTTTGCTTCGTTTATT 58.565 36.000 21.18 0.00 0.00 1.40
237 238 5.048991 CCCACTAGTGTTTTGCTTCGTTTAT 60.049 40.000 21.18 0.00 0.00 1.40
238 239 4.273969 CCCACTAGTGTTTTGCTTCGTTTA 59.726 41.667 21.18 0.00 0.00 2.01
239 240 3.066203 CCCACTAGTGTTTTGCTTCGTTT 59.934 43.478 21.18 0.00 0.00 3.60
240 241 2.616842 CCCACTAGTGTTTTGCTTCGTT 59.383 45.455 21.18 0.00 0.00 3.85
241 242 2.158871 TCCCACTAGTGTTTTGCTTCGT 60.159 45.455 21.18 0.00 0.00 3.85
242 243 2.480419 CTCCCACTAGTGTTTTGCTTCG 59.520 50.000 21.18 2.82 0.00 3.79
243 244 2.814336 CCTCCCACTAGTGTTTTGCTTC 59.186 50.000 21.18 0.00 0.00 3.86
244 245 2.489073 CCCTCCCACTAGTGTTTTGCTT 60.489 50.000 21.18 0.00 0.00 3.91
245 246 1.073923 CCCTCCCACTAGTGTTTTGCT 59.926 52.381 21.18 0.00 0.00 3.91
246 247 1.073284 TCCCTCCCACTAGTGTTTTGC 59.927 52.381 21.18 0.00 0.00 3.68
247 248 2.372172 AGTCCCTCCCACTAGTGTTTTG 59.628 50.000 21.18 6.03 0.00 2.44
248 249 2.372172 CAGTCCCTCCCACTAGTGTTTT 59.628 50.000 21.18 0.00 0.00 2.43
249 250 1.978580 CAGTCCCTCCCACTAGTGTTT 59.021 52.381 21.18 0.00 0.00 2.83
250 251 1.645710 CAGTCCCTCCCACTAGTGTT 58.354 55.000 21.18 0.00 0.00 3.32
251 252 0.252284 CCAGTCCCTCCCACTAGTGT 60.252 60.000 21.18 0.00 0.00 3.55
252 253 1.617947 GCCAGTCCCTCCCACTAGTG 61.618 65.000 16.34 16.34 0.00 2.74
253 254 1.306226 GCCAGTCCCTCCCACTAGT 60.306 63.158 0.00 0.00 0.00 2.57
254 255 0.909610 TTGCCAGTCCCTCCCACTAG 60.910 60.000 0.00 0.00 0.00 2.57
255 256 0.253160 ATTGCCAGTCCCTCCCACTA 60.253 55.000 0.00 0.00 0.00 2.74
256 257 1.142688 AATTGCCAGTCCCTCCCACT 61.143 55.000 0.00 0.00 0.00 4.00
257 258 0.251787 AAATTGCCAGTCCCTCCCAC 60.252 55.000 0.00 0.00 0.00 4.61
258 259 0.251742 CAAATTGCCAGTCCCTCCCA 60.252 55.000 0.00 0.00 0.00 4.37
259 260 0.039618 TCAAATTGCCAGTCCCTCCC 59.960 55.000 0.00 0.00 0.00 4.30
260 261 1.467920 CTCAAATTGCCAGTCCCTCC 58.532 55.000 0.00 0.00 0.00 4.30
261 262 0.813821 GCTCAAATTGCCAGTCCCTC 59.186 55.000 0.00 0.00 0.00 4.30
262 263 0.112995 TGCTCAAATTGCCAGTCCCT 59.887 50.000 0.00 0.00 0.00 4.20
263 264 0.968405 TTGCTCAAATTGCCAGTCCC 59.032 50.000 0.00 0.00 0.00 4.46
264 265 1.615392 AGTTGCTCAAATTGCCAGTCC 59.385 47.619 0.00 0.00 0.00 3.85
265 266 2.294233 TGAGTTGCTCAAATTGCCAGTC 59.706 45.455 0.00 0.00 37.57 3.51
266 267 2.309613 TGAGTTGCTCAAATTGCCAGT 58.690 42.857 0.00 0.00 37.57 4.00
267 268 3.374220 TTGAGTTGCTCAAATTGCCAG 57.626 42.857 8.89 0.00 45.84 4.85
275 276 3.207265 TGCCTTAGTTGAGTTGCTCAA 57.793 42.857 7.41 7.41 46.50 3.02
276 277 2.928801 TGCCTTAGTTGAGTTGCTCA 57.071 45.000 0.00 0.00 38.87 4.26
277 278 3.058639 CACTTGCCTTAGTTGAGTTGCTC 60.059 47.826 0.00 0.00 0.00 4.26
278 279 2.880890 CACTTGCCTTAGTTGAGTTGCT 59.119 45.455 0.00 0.00 0.00 3.91
279 280 2.618709 ACACTTGCCTTAGTTGAGTTGC 59.381 45.455 0.00 0.00 0.00 4.17
280 281 3.003689 CCACACTTGCCTTAGTTGAGTTG 59.996 47.826 0.00 0.00 0.00 3.16
281 282 3.214328 CCACACTTGCCTTAGTTGAGTT 58.786 45.455 0.00 0.00 0.00 3.01
282 283 2.851195 CCACACTTGCCTTAGTTGAGT 58.149 47.619 0.00 0.00 0.00 3.41
283 284 1.537202 GCCACACTTGCCTTAGTTGAG 59.463 52.381 0.00 0.00 0.00 3.02
284 285 1.133945 TGCCACACTTGCCTTAGTTGA 60.134 47.619 0.00 0.00 0.00 3.18
285 286 1.317613 TGCCACACTTGCCTTAGTTG 58.682 50.000 0.00 0.00 0.00 3.16
286 287 2.065899 TTGCCACACTTGCCTTAGTT 57.934 45.000 0.00 0.00 0.00 2.24
287 288 2.065899 TTTGCCACACTTGCCTTAGT 57.934 45.000 0.00 0.00 0.00 2.24
288 289 3.451141 TTTTTGCCACACTTGCCTTAG 57.549 42.857 0.00 0.00 0.00 2.18
289 290 3.386078 TGATTTTTGCCACACTTGCCTTA 59.614 39.130 0.00 0.00 0.00 2.69
290 291 2.170187 TGATTTTTGCCACACTTGCCTT 59.830 40.909 0.00 0.00 0.00 4.35
291 292 1.761784 TGATTTTTGCCACACTTGCCT 59.238 42.857 0.00 0.00 0.00 4.75
292 293 2.237393 TGATTTTTGCCACACTTGCC 57.763 45.000 0.00 0.00 0.00 4.52
293 294 3.059461 CACATGATTTTTGCCACACTTGC 60.059 43.478 0.00 0.00 0.00 4.01
294 295 3.495377 CCACATGATTTTTGCCACACTTG 59.505 43.478 0.00 0.00 0.00 3.16
295 296 3.731089 CCACATGATTTTTGCCACACTT 58.269 40.909 0.00 0.00 0.00 3.16
296 297 2.548493 GCCACATGATTTTTGCCACACT 60.548 45.455 0.00 0.00 0.00 3.55
297 298 1.799994 GCCACATGATTTTTGCCACAC 59.200 47.619 0.00 0.00 0.00 3.82
298 299 1.415289 TGCCACATGATTTTTGCCACA 59.585 42.857 0.00 0.00 0.00 4.17
299 300 2.166821 TGCCACATGATTTTTGCCAC 57.833 45.000 0.00 0.00 0.00 5.01
300 301 2.924757 TTGCCACATGATTTTTGCCA 57.075 40.000 0.00 0.00 0.00 4.92
301 302 6.148150 CCATATATTGCCACATGATTTTTGCC 59.852 38.462 0.00 0.00 0.00 4.52
302 303 6.707161 ACCATATATTGCCACATGATTTTTGC 59.293 34.615 0.00 0.00 0.00 3.68
303 304 9.761504 TTACCATATATTGCCACATGATTTTTG 57.238 29.630 0.00 0.00 0.00 2.44
308 309 9.932207 CATTTTTACCATATATTGCCACATGAT 57.068 29.630 0.00 0.00 0.00 2.45
309 310 8.366401 CCATTTTTACCATATATTGCCACATGA 58.634 33.333 0.00 0.00 0.00 3.07
310 311 8.149647 ACCATTTTTACCATATATTGCCACATG 58.850 33.333 0.00 0.00 0.00 3.21
311 312 8.261349 ACCATTTTTACCATATATTGCCACAT 57.739 30.769 0.00 0.00 0.00 3.21
312 313 7.343057 TGACCATTTTTACCATATATTGCCACA 59.657 33.333 0.00 0.00 0.00 4.17
313 314 7.651704 GTGACCATTTTTACCATATATTGCCAC 59.348 37.037 0.00 0.00 0.00 5.01
314 315 7.343057 TGTGACCATTTTTACCATATATTGCCA 59.657 33.333 0.00 0.00 0.00 4.92
315 316 7.721402 TGTGACCATTTTTACCATATATTGCC 58.279 34.615 0.00 0.00 0.00 4.52
316 317 9.762933 ATTGTGACCATTTTTACCATATATTGC 57.237 29.630 0.00 0.00 0.00 3.56
319 320 9.653516 TGGATTGTGACCATTTTTACCATATAT 57.346 29.630 0.00 0.00 32.03 0.86
320 321 9.480861 TTGGATTGTGACCATTTTTACCATATA 57.519 29.630 0.00 0.00 37.26 0.86
321 322 7.969690 TGGATTGTGACCATTTTTACCATAT 57.030 32.000 0.00 0.00 32.03 1.78
322 323 7.782897 TTGGATTGTGACCATTTTTACCATA 57.217 32.000 0.00 0.00 37.26 2.74
323 324 6.678568 TTGGATTGTGACCATTTTTACCAT 57.321 33.333 0.00 0.00 37.26 3.55
324 325 6.127054 TGTTTGGATTGTGACCATTTTTACCA 60.127 34.615 0.00 0.00 37.26 3.25
325 326 6.284459 TGTTTGGATTGTGACCATTTTTACC 58.716 36.000 0.00 0.00 37.26 2.85
326 327 7.254624 GGTTGTTTGGATTGTGACCATTTTTAC 60.255 37.037 0.00 0.00 37.26 2.01
327 328 6.763610 GGTTGTTTGGATTGTGACCATTTTTA 59.236 34.615 0.00 0.00 37.26 1.52
328 329 5.588246 GGTTGTTTGGATTGTGACCATTTTT 59.412 36.000 0.00 0.00 37.26 1.94
329 330 5.122519 GGTTGTTTGGATTGTGACCATTTT 58.877 37.500 0.00 0.00 37.26 1.82
330 331 4.444164 GGGTTGTTTGGATTGTGACCATTT 60.444 41.667 0.00 0.00 37.26 2.32
331 332 3.070878 GGGTTGTTTGGATTGTGACCATT 59.929 43.478 0.00 0.00 37.26 3.16
332 333 2.632512 GGGTTGTTTGGATTGTGACCAT 59.367 45.455 0.00 0.00 37.26 3.55
333 334 2.035632 GGGTTGTTTGGATTGTGACCA 58.964 47.619 0.00 0.00 35.47 4.02
334 335 2.316108 AGGGTTGTTTGGATTGTGACC 58.684 47.619 0.00 0.00 0.00 4.02
335 336 4.394729 TCTAGGGTTGTTTGGATTGTGAC 58.605 43.478 0.00 0.00 0.00 3.67
336 337 4.715534 TCTAGGGTTGTTTGGATTGTGA 57.284 40.909 0.00 0.00 0.00 3.58
337 338 5.243730 ACAATCTAGGGTTGTTTGGATTGTG 59.756 40.000 15.26 0.00 46.02 3.33
338 339 5.393866 ACAATCTAGGGTTGTTTGGATTGT 58.606 37.500 11.66 11.66 44.33 2.71
339 340 5.982890 ACAATCTAGGGTTGTTTGGATTG 57.017 39.130 10.61 10.61 42.94 2.67
347 348 6.543735 AGCTTCTTAAACAATCTAGGGTTGT 58.456 36.000 8.15 8.15 41.28 3.32
348 349 7.174946 TGAAGCTTCTTAAACAATCTAGGGTTG 59.825 37.037 26.09 7.09 0.00 3.77
349 350 7.231467 TGAAGCTTCTTAAACAATCTAGGGTT 58.769 34.615 26.09 0.00 0.00 4.11
350 351 6.779860 TGAAGCTTCTTAAACAATCTAGGGT 58.220 36.000 26.09 0.00 0.00 4.34
351 352 7.872113 ATGAAGCTTCTTAAACAATCTAGGG 57.128 36.000 26.09 0.00 0.00 3.53
361 362 8.879759 CGGTACAAGAATATGAAGCTTCTTAAA 58.120 33.333 26.09 7.35 39.15 1.52
415 416 1.269206 GGTGTGTGTGGAAGCATGTTG 60.269 52.381 0.00 0.00 0.00 3.33
417 418 0.823356 GGGTGTGTGTGGAAGCATGT 60.823 55.000 0.00 0.00 0.00 3.21
418 419 0.822944 TGGGTGTGTGTGGAAGCATG 60.823 55.000 0.00 0.00 0.00 4.06
419 420 0.112995 ATGGGTGTGTGTGGAAGCAT 59.887 50.000 0.00 0.00 0.00 3.79
420 421 0.822944 CATGGGTGTGTGTGGAAGCA 60.823 55.000 0.00 0.00 0.00 3.91
421 422 0.823356 ACATGGGTGTGTGTGGAAGC 60.823 55.000 0.00 0.00 37.14 3.86
422 423 3.419793 ACATGGGTGTGTGTGGAAG 57.580 52.632 0.00 0.00 37.14 3.46
431 432 6.882140 TCGAATTTTACTATTCACATGGGTGT 59.118 34.615 0.00 0.00 45.45 4.16
432 433 7.315247 TCGAATTTTACTATTCACATGGGTG 57.685 36.000 0.00 0.00 46.66 4.61
433 434 7.931578 TTCGAATTTTACTATTCACATGGGT 57.068 32.000 0.00 0.00 34.83 4.51
434 435 9.632807 TTTTTCGAATTTTACTATTCACATGGG 57.367 29.630 0.00 0.00 34.83 4.00
525 527 0.725784 CTTCACCAAACATCACGCGC 60.726 55.000 5.73 0.00 0.00 6.86
527 529 3.183237 GTACTTCACCAAACATCACGC 57.817 47.619 0.00 0.00 0.00 5.34
538 540 0.611714 ATGGGTGTCGGTACTTCACC 59.388 55.000 18.90 18.90 44.40 4.02
545 547 5.778241 ACTATGAATATCATGGGTGTCGGTA 59.222 40.000 8.31 0.00 39.34 4.02
568 577 9.848172 GTGATGTTTGAATTGTATTTTGTTCAC 57.152 29.630 0.00 0.00 30.96 3.18
587 596 6.308566 GGAGGGAGTAGATAGTAGTGATGTT 58.691 44.000 0.00 0.00 0.00 2.71
590 599 4.598373 ACGGAGGGAGTAGATAGTAGTGAT 59.402 45.833 0.00 0.00 0.00 3.06
592 601 4.354893 ACGGAGGGAGTAGATAGTAGTG 57.645 50.000 0.00 0.00 0.00 2.74
597 606 3.225177 TGGAACGGAGGGAGTAGATAG 57.775 52.381 0.00 0.00 0.00 2.08
598 607 3.675348 TTGGAACGGAGGGAGTAGATA 57.325 47.619 0.00 0.00 0.00 1.98
599 608 2.544844 TTGGAACGGAGGGAGTAGAT 57.455 50.000 0.00 0.00 0.00 1.98
600 609 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
601 610 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
602 611 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
603 612 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
604 613 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
605 614 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
606 615 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
607 616 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
608 617 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
609 618 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
610 619 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
611 620 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
612 621 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
613 622 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
614 623 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
615 624 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
616 625 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
617 626 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
618 627 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
619 628 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
620 629 7.553044 GCTTTAGTACAAAGTTGGGTCATCTAT 59.447 37.037 14.90 0.00 0.00 1.98
621 630 6.877322 GCTTTAGTACAAAGTTGGGTCATCTA 59.123 38.462 14.90 0.00 0.00 1.98
622 631 5.705905 GCTTTAGTACAAAGTTGGGTCATCT 59.294 40.000 14.90 0.00 0.00 2.90
623 632 5.705905 AGCTTTAGTACAAAGTTGGGTCATC 59.294 40.000 14.90 1.67 0.00 2.92
624 633 5.631119 AGCTTTAGTACAAAGTTGGGTCAT 58.369 37.500 14.90 0.00 0.00 3.06
625 634 5.043737 AGCTTTAGTACAAAGTTGGGTCA 57.956 39.130 14.90 0.00 0.00 4.02
626 635 6.228995 ACTAGCTTTAGTACAAAGTTGGGTC 58.771 40.000 15.82 4.33 0.00 4.46
627 636 6.183810 ACTAGCTTTAGTACAAAGTTGGGT 57.816 37.500 15.82 11.73 0.00 4.51
628 637 9.880157 TTATACTAGCTTTAGTACAAAGTTGGG 57.120 33.333 15.82 11.36 35.60 4.12
635 644 9.880157 CCCAACTTTATACTAGCTTTAGTACAA 57.120 33.333 0.00 0.00 35.60 2.41
636 645 9.039165 ACCCAACTTTATACTAGCTTTAGTACA 57.961 33.333 0.00 0.00 35.60 2.90
637 646 9.526713 GACCCAACTTTATACTAGCTTTAGTAC 57.473 37.037 0.00 0.00 35.60 2.73
638 647 9.258629 TGACCCAACTTTATACTAGCTTTAGTA 57.741 33.333 0.00 0.00 37.01 1.82
639 648 8.142485 TGACCCAACTTTATACTAGCTTTAGT 57.858 34.615 0.00 0.00 0.00 2.24
640 649 9.262358 GATGACCCAACTTTATACTAGCTTTAG 57.738 37.037 0.00 0.00 0.00 1.85
641 650 8.989131 AGATGACCCAACTTTATACTAGCTTTA 58.011 33.333 0.00 0.00 0.00 1.85
642 651 7.862675 AGATGACCCAACTTTATACTAGCTTT 58.137 34.615 0.00 0.00 0.00 3.51
643 652 7.439108 AGATGACCCAACTTTATACTAGCTT 57.561 36.000 0.00 0.00 0.00 3.74
644 653 8.728596 ATAGATGACCCAACTTTATACTAGCT 57.271 34.615 0.00 0.00 0.00 3.32
645 654 9.780186 AAATAGATGACCCAACTTTATACTAGC 57.220 33.333 0.00 0.00 0.00 3.42
648 657 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
649 658 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
650 659 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
651 660 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
652 661 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
653 662 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
654 663 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
655 664 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
656 665 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
657 666 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
658 667 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
659 668 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
660 669 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
661 670 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
662 671 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
663 672 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
664 673 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
665 674 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
666 675 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
667 676 4.717778 TGATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
668 677 3.521937 TGATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
669 678 2.907696 TGATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
670 679 2.542550 TGATACTCCCTCCGTTCCAAA 58.457 47.619 0.00 0.00 0.00 3.28
671 680 2.241281 TGATACTCCCTCCGTTCCAA 57.759 50.000 0.00 0.00 0.00 3.53
672 681 2.241281 TTGATACTCCCTCCGTTCCA 57.759 50.000 0.00 0.00 0.00 3.53
673 682 3.840124 ATTTGATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
674 683 5.163437 ACACTATTTGATACTCCCTCCGTTC 60.163 44.000 0.00 0.00 0.00 3.95
675 684 4.715297 ACACTATTTGATACTCCCTCCGTT 59.285 41.667 0.00 0.00 0.00 4.44
676 685 4.287552 ACACTATTTGATACTCCCTCCGT 58.712 43.478 0.00 0.00 0.00 4.69
677 686 4.939052 ACACTATTTGATACTCCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
678 687 7.939784 AAAAACACTATTTGATACTCCCTCC 57.060 36.000 0.00 0.00 0.00 4.30
706 715 7.566858 AAAAATGACAAAATCGACACTATGC 57.433 32.000 0.00 0.00 0.00 3.14
739 751 5.633601 TCACGAACAAATGACATCTGTAGTC 59.366 40.000 0.00 0.00 36.55 2.59
747 759 6.130298 TGAAGTTTCACGAACAAATGACAT 57.870 33.333 0.00 0.00 40.84 3.06
756 768 2.406024 TCGCGTATGAAGTTTCACGAAC 59.594 45.455 5.77 2.75 40.49 3.95
760 772 5.108854 CGTATACTCGCGTATGAAGTTTCAC 60.109 44.000 5.77 0.22 40.49 3.18
776 788 2.810274 TGCATAGTCGACCCGTATACTC 59.190 50.000 13.01 0.00 0.00 2.59
784 796 0.314302 ATAGCGTGCATAGTCGACCC 59.686 55.000 13.01 0.00 0.00 4.46
856 874 7.011576 ACGCGAATATAATGAACATGGTTAACA 59.988 33.333 15.93 0.00 0.00 2.41
858 876 7.307514 GGACGCGAATATAATGAACATGGTTAA 60.308 37.037 15.93 0.00 0.00 2.01
874 900 4.567971 TCCTTACAAAAAGGACGCGAATA 58.432 39.130 15.93 0.00 41.27 1.75
899 930 7.967854 CGCTCAAGGTCAATATTCAATAAAACA 59.032 33.333 0.00 0.00 0.00 2.83
985 1035 1.982073 GACATCTTTCGGGGCTTGCG 61.982 60.000 0.00 0.00 0.00 4.85
986 1036 1.803289 GACATCTTTCGGGGCTTGC 59.197 57.895 0.00 0.00 0.00 4.01
987 1037 1.982073 GCGACATCTTTCGGGGCTTG 61.982 60.000 0.00 0.00 39.50 4.01
989 1039 2.125106 GCGACATCTTTCGGGGCT 60.125 61.111 0.00 0.00 39.50 5.19
990 1040 1.706287 GAAGCGACATCTTTCGGGGC 61.706 60.000 0.00 0.00 39.50 5.80
991 1041 1.090052 GGAAGCGACATCTTTCGGGG 61.090 60.000 0.00 0.00 39.50 5.73
1816 1893 4.576330 AACTTGGGGGATTTCTCACTAG 57.424 45.455 0.00 0.00 0.00 2.57
1852 1929 3.374988 CACCAAGCATACAGTGTATGTGG 59.625 47.826 32.04 32.04 43.80 4.17
1931 2024 9.042008 TGTGGTTATTATTAAGCTTCTTCGATC 57.958 33.333 0.00 0.00 36.87 3.69
2019 2118 6.868622 ACCTAAGTTCTACAGCAACAGATAG 58.131 40.000 0.00 0.00 0.00 2.08
2051 2154 7.277098 GCCAGTTTCACGAATCTAAGTTATACA 59.723 37.037 0.00 0.00 0.00 2.29
2052 2155 7.254353 GGCCAGTTTCACGAATCTAAGTTATAC 60.254 40.741 0.00 0.00 0.00 1.47
2078 2181 7.445945 AGAAAATAATCCTCCTAGAATGGTCG 58.554 38.462 0.00 0.00 0.00 4.79
2081 2184 9.282569 CTTGAGAAAATAATCCTCCTAGAATGG 57.717 37.037 0.00 0.00 0.00 3.16
2315 2418 0.887933 ACAGCTAATGCAAAACGGGG 59.112 50.000 0.00 0.00 42.74 5.73
2345 2448 3.763057 ACAGCTAGTAAACCAAAAGGGG 58.237 45.455 0.00 0.00 42.91 4.79
2365 2468 2.910688 TCAGCGAGGATTATGGGAAC 57.089 50.000 0.00 0.00 0.00 3.62
2414 2517 2.017049 CGAGTCATGTCAAAATCCCCC 58.983 52.381 0.00 0.00 0.00 5.40
2428 2531 3.552890 CCAGAACAAGATGTGTCGAGTCA 60.553 47.826 0.00 0.00 40.60 3.41
2457 2572 9.294030 CAAATGTAAGCATGGAGTTTAAGATTC 57.706 33.333 0.00 0.00 35.15 2.52
2522 2637 2.266070 GCAGGCTGCATAACACCAA 58.734 52.632 33.33 0.00 44.26 3.67
2629 2744 3.245519 CGTCATCTGTCATTCAGCTCATG 59.754 47.826 0.00 0.00 43.32 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.