Multiple sequence alignment - TraesCS7B01G433700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G433700 chr7B 100.000 7625 0 0 1 7625 701179105 701171481 0.000000e+00 14081.0
1 TraesCS7B01G433700 chr7B 93.543 1146 50 11 6193 7330 701158180 701157051 0.000000e+00 1685.0
2 TraesCS7B01G433700 chr7B 96.545 984 30 3 5215 6195 701159275 701158293 0.000000e+00 1626.0
3 TraesCS7B01G433700 chr7B 88.608 237 12 6 7332 7554 701155230 701154995 2.710000e-69 274.0
4 TraesCS7B01G433700 chr7B 89.041 73 3 1 4097 4164 99103405 99103477 1.360000e-12 86.1
5 TraesCS7B01G433700 chr7A 94.173 3604 155 29 1454 5030 701634975 701631400 0.000000e+00 5441.0
6 TraesCS7B01G433700 chr7A 95.263 1710 71 3 5016 6718 701631254 701629548 0.000000e+00 2700.0
7 TraesCS7B01G433700 chr7A 89.675 891 58 22 6743 7607 701629560 701628678 0.000000e+00 1105.0
8 TraesCS7B01G433700 chr7A 87.815 952 80 18 355 1286 701635936 701635001 0.000000e+00 1083.0
9 TraesCS7B01G433700 chr7A 93.213 221 14 1 1 221 701636671 701636452 2.650000e-84 324.0
10 TraesCS7B01G433700 chr7A 100.000 30 0 0 4139 4168 208171903 208171932 1.000000e-03 56.5
11 TraesCS7B01G433700 chr7D 90.615 3676 194 49 508 4076 611716958 611713327 0.000000e+00 4737.0
12 TraesCS7B01G433700 chr7D 96.483 1848 61 4 4204 6050 611713228 611711384 0.000000e+00 3049.0
13 TraesCS7B01G433700 chr7D 92.822 1421 71 16 6033 7432 611711336 611709926 0.000000e+00 2030.0
14 TraesCS7B01G433700 chr7D 97.674 43 1 0 7583 7625 611709803 611709761 2.950000e-09 75.0
15 TraesCS7B01G433700 chr7D 97.674 43 1 0 4162 4204 611713330 611713288 2.950000e-09 75.0
16 TraesCS7B01G433700 chr6B 80.719 306 34 15 988 1273 186589482 186589782 1.670000e-51 215.0
17 TraesCS7B01G433700 chr6B 85.311 177 26 0 2823 2999 186591811 186591987 4.700000e-42 183.0
18 TraesCS7B01G433700 chr6B 100.000 29 0 0 4139 4167 173526497 173526469 4.000000e-03 54.7
19 TraesCS7B01G433700 chr6D 85.876 177 25 0 2823 2999 101492070 101492246 1.010000e-43 189.0
20 TraesCS7B01G433700 chr4B 94.048 84 3 1 273 354 466023352 466023269 8.030000e-25 126.0
21 TraesCS7B01G433700 chr4B 93.827 81 4 1 275 355 47022122 47022043 3.740000e-23 121.0
22 TraesCS7B01G433700 chr4A 96.154 78 2 1 273 349 712959858 712959935 8.030000e-25 126.0
23 TraesCS7B01G433700 chr6A 93.976 83 3 2 273 353 32382400 32382318 2.890000e-24 124.0
24 TraesCS7B01G433700 chr6A 93.976 83 3 2 273 353 32503464 32503382 2.890000e-24 124.0
25 TraesCS7B01G433700 chr2D 94.937 79 3 1 273 351 383550991 383551068 1.040000e-23 122.0
26 TraesCS7B01G433700 chr2D 100.000 29 0 0 4144 4172 445896387 445896415 4.000000e-03 54.7
27 TraesCS7B01G433700 chr1D 93.902 82 4 1 273 354 301218413 301218333 1.040000e-23 122.0
28 TraesCS7B01G433700 chr5A 91.860 86 6 1 273 357 98446313 98446228 1.340000e-22 119.0
29 TraesCS7B01G433700 chr3B 91.954 87 3 4 275 358 597823262 597823347 1.340000e-22 119.0
30 TraesCS7B01G433700 chr2A 97.561 41 1 0 4124 4164 153533074 153533114 3.820000e-08 71.3
31 TraesCS7B01G433700 chr5B 100.000 29 0 0 4139 4167 553354453 553354481 4.000000e-03 54.7
32 TraesCS7B01G433700 chr3D 87.500 48 5 1 4120 4167 456595966 456595920 4.000000e-03 54.7
33 TraesCS7B01G433700 chr2B 100.000 29 0 0 4139 4167 211535651 211535679 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G433700 chr7B 701171481 701179105 7624 True 14081.0 14081 100.000000 1 7625 1 chr7B.!!$R1 7624
1 TraesCS7B01G433700 chr7B 701154995 701159275 4280 True 1195.0 1685 92.898667 5215 7554 3 chr7B.!!$R2 2339
2 TraesCS7B01G433700 chr7A 701628678 701636671 7993 True 2130.6 5441 92.027800 1 7607 5 chr7A.!!$R1 7606
3 TraesCS7B01G433700 chr7D 611709761 611716958 7197 True 1993.2 4737 95.053600 508 7625 5 chr7D.!!$R1 7117

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 1194 0.393402 TACTCGAAGCTGTAGCCCGA 60.393 55.000 14.93 14.93 43.38 5.14 F
1472 1991 0.031212 ATTGGGTATGGGCCTTTGGG 60.031 55.000 4.53 0.00 0.00 4.12 F
2501 3064 0.178953 AGAAGCCCATTGCACTGGTT 60.179 50.000 20.56 10.12 44.83 3.67 F
3542 4142 0.038892 GTGGTTGGCTGATTGCACTG 60.039 55.000 0.00 0.00 45.15 3.66 F
3937 4539 1.071471 CCCTGTTCTTCCGCACTGT 59.929 57.895 0.00 0.00 0.00 3.55 F
5445 6273 1.679139 CATCCTTTGGCGATTGGCTA 58.321 50.000 8.17 0.00 42.94 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2676 0.179086 ACAAAGGCAAAACAAGGGCG 60.179 50.000 0.00 0.0 34.32 6.13 R
3041 3640 0.178068 TCCGAGGTGCTGGAAATAGC 59.822 55.000 0.00 0.0 43.95 2.97 R
4410 5076 1.004745 CTCTAACTGGTGGCAATGGGT 59.995 52.381 0.00 0.0 0.00 4.51 R
5529 6357 0.608640 CCTGGTACGCTTGAACTCCT 59.391 55.000 0.00 0.0 0.00 3.69 R
5575 6404 7.718525 TGGTTTTCTTAGGTAAAAACATCCAC 58.281 34.615 11.47 0.0 43.74 4.02 R
6739 7758 0.036388 GTCCGAATTCTCCACAGCCA 60.036 55.000 3.52 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.529880 AATCAAGAAAAAGAAAGTGTGCTTG 57.470 32.000 0.00 0.00 34.71 4.01
66 67 4.662145 AGAAAAAGAAAGTGTGCTTGTCG 58.338 39.130 0.00 0.00 34.71 4.35
71 72 4.278678 AGAAAGTGTGCTTGTCGAAAAG 57.721 40.909 11.22 11.22 34.71 2.27
73 74 2.325583 AGTGTGCTTGTCGAAAAGGA 57.674 45.000 17.03 11.66 0.00 3.36
74 75 2.639065 AGTGTGCTTGTCGAAAAGGAA 58.361 42.857 17.03 2.96 0.00 3.36
106 107 3.126171 CCGCGAATTTAACATGGAGAACA 59.874 43.478 8.23 0.00 0.00 3.18
114 115 2.437359 ATGGAGAACAGGCAGCGC 60.437 61.111 0.00 0.00 0.00 5.92
144 145 3.733077 GCCATGCTTAGATCAAGTGCAAC 60.733 47.826 0.00 0.00 37.20 4.17
188 189 6.258947 GGAGCATATAGAAAACACTCCTTGTC 59.741 42.308 0.00 0.00 37.51 3.18
192 193 7.094377 GCATATAGAAAACACTCCTTGTCCAAA 60.094 37.037 0.00 0.00 37.51 3.28
224 698 2.875087 TCGAAAAGGTCACGTCTCAA 57.125 45.000 0.00 0.00 0.00 3.02
231 705 4.345859 AAGGTCACGTCTCAACCAATTA 57.654 40.909 8.23 0.00 35.43 1.40
234 708 6.235231 AGGTCACGTCTCAACCAATTATAT 57.765 37.500 8.23 0.00 35.43 0.86
236 710 5.465724 GGTCACGTCTCAACCAATTATATCC 59.534 44.000 0.00 0.00 33.11 2.59
238 712 6.018994 GTCACGTCTCAACCAATTATATCCAC 60.019 42.308 0.00 0.00 0.00 4.02
247 721 7.234782 TCAACCAATTATATCCACGGAGTAGAT 59.765 37.037 0.00 0.00 41.61 1.98
261 735 8.794553 CCACGGAGTAGATATGTAAATAGAAGT 58.205 37.037 0.00 0.00 41.61 3.01
264 738 9.991388 CGGAGTAGATATGTAAATAGAAGTAGC 57.009 37.037 0.00 0.00 0.00 3.58
268 742 9.279904 GTAGATATGTAAATAGAAGTAGCAGCG 57.720 37.037 0.00 0.00 0.00 5.18
269 743 8.112016 AGATATGTAAATAGAAGTAGCAGCGA 57.888 34.615 0.00 0.00 0.00 4.93
270 744 8.240682 AGATATGTAAATAGAAGTAGCAGCGAG 58.759 37.037 0.00 0.00 0.00 5.03
271 745 5.578005 TGTAAATAGAAGTAGCAGCGAGT 57.422 39.130 0.00 0.00 0.00 4.18
272 746 6.688637 TGTAAATAGAAGTAGCAGCGAGTA 57.311 37.500 0.00 0.00 0.00 2.59
273 747 6.493116 TGTAAATAGAAGTAGCAGCGAGTAC 58.507 40.000 0.00 0.00 0.00 2.73
274 748 3.881780 ATAGAAGTAGCAGCGAGTACG 57.118 47.619 0.00 0.00 42.93 3.67
275 749 1.735386 AGAAGTAGCAGCGAGTACGA 58.265 50.000 0.00 0.00 42.66 3.43
276 750 2.290464 AGAAGTAGCAGCGAGTACGAT 58.710 47.619 0.00 0.00 42.66 3.73
277 751 3.464907 AGAAGTAGCAGCGAGTACGATA 58.535 45.455 0.00 0.00 42.66 2.92
278 752 4.066490 AGAAGTAGCAGCGAGTACGATAT 58.934 43.478 0.00 0.00 42.66 1.63
279 753 4.515944 AGAAGTAGCAGCGAGTACGATATT 59.484 41.667 0.00 0.00 42.66 1.28
280 754 4.148563 AGTAGCAGCGAGTACGATATTG 57.851 45.455 0.00 0.00 42.66 1.90
281 755 3.564644 AGTAGCAGCGAGTACGATATTGT 59.435 43.478 0.23 0.23 42.66 2.71
282 756 4.753610 AGTAGCAGCGAGTACGATATTGTA 59.246 41.667 0.00 0.00 42.66 2.41
283 757 4.563337 AGCAGCGAGTACGATATTGTAA 57.437 40.909 4.29 0.00 42.66 2.41
284 758 4.928601 AGCAGCGAGTACGATATTGTAAA 58.071 39.130 4.29 0.00 42.66 2.01
285 759 5.529791 AGCAGCGAGTACGATATTGTAAAT 58.470 37.500 4.29 0.00 42.66 1.40
286 760 5.983720 AGCAGCGAGTACGATATTGTAAATT 59.016 36.000 4.29 0.00 42.66 1.82
287 761 6.479001 AGCAGCGAGTACGATATTGTAAATTT 59.521 34.615 4.29 0.00 42.66 1.82
288 762 6.786103 GCAGCGAGTACGATATTGTAAATTTC 59.214 38.462 4.29 1.09 42.66 2.17
289 763 7.281484 CAGCGAGTACGATATTGTAAATTTCC 58.719 38.462 4.29 0.00 42.66 3.13
290 764 7.169308 CAGCGAGTACGATATTGTAAATTTCCT 59.831 37.037 4.29 0.00 42.66 3.36
291 765 7.709613 AGCGAGTACGATATTGTAAATTTCCTT 59.290 33.333 4.29 0.00 42.66 3.36
292 766 8.971321 GCGAGTACGATATTGTAAATTTCCTTA 58.029 33.333 4.29 0.00 42.66 2.69
370 844 0.905839 GAAGCAGCGAGTACGTAACG 59.094 55.000 15.76 15.76 41.98 3.18
372 846 1.078709 AGCAGCGAGTACGTAACGTA 58.921 50.000 19.30 0.00 41.54 3.57
404 878 2.519691 AGAATGGCAAAGGGATATGGGT 59.480 45.455 0.00 0.00 0.00 4.51
405 879 2.386829 ATGGCAAAGGGATATGGGTG 57.613 50.000 0.00 0.00 0.00 4.61
409 883 1.986882 CAAAGGGATATGGGTGGAGC 58.013 55.000 0.00 0.00 0.00 4.70
410 884 0.853530 AAAGGGATATGGGTGGAGCC 59.146 55.000 0.00 0.00 0.00 4.70
414 888 1.674057 GATATGGGTGGAGCCTCCG 59.326 63.158 6.21 0.00 40.17 4.63
418 892 2.043248 GGGTGGAGCCTCCGTAGA 60.043 66.667 6.21 0.00 40.17 2.59
428 902 3.120979 CTCCGTAGACGATGGCGCA 62.121 63.158 10.83 0.00 43.02 6.09
429 903 2.202690 CCGTAGACGATGGCGCAA 60.203 61.111 10.83 0.00 43.02 4.85
430 904 1.807981 CCGTAGACGATGGCGCAAA 60.808 57.895 10.83 0.00 43.02 3.68
431 905 1.151777 CCGTAGACGATGGCGCAAAT 61.152 55.000 10.83 1.06 43.02 2.32
443 919 1.466855 GCGCAAATCATCTTTACGCC 58.533 50.000 0.30 0.00 39.01 5.68
447 923 3.181511 CGCAAATCATCTTTACGCCTTCA 60.182 43.478 0.00 0.00 0.00 3.02
452 928 7.679638 GCAAATCATCTTTACGCCTTCACTATT 60.680 37.037 0.00 0.00 0.00 1.73
464 945 5.445540 CGCCTTCACTATTTAAACCGAGTTC 60.446 44.000 0.00 0.00 0.00 3.01
469 950 9.893305 CTTCACTATTTAAACCGAGTTCATTTT 57.107 29.630 0.00 0.00 0.00 1.82
501 982 1.542492 TACAGGTGGTTCGAGAGGTC 58.458 55.000 0.00 0.00 0.00 3.85
502 983 1.186267 ACAGGTGGTTCGAGAGGTCC 61.186 60.000 0.00 0.00 0.00 4.46
520 1001 0.958822 CCAAGGAAAAACCCAGACCG 59.041 55.000 0.00 0.00 40.05 4.79
521 1002 1.477923 CCAAGGAAAAACCCAGACCGA 60.478 52.381 0.00 0.00 40.05 4.69
536 1017 0.938713 ACCGAAAAATCAACGCGACA 59.061 45.000 15.93 0.00 0.00 4.35
547 1028 1.711060 AACGCGACACAACCCACTTG 61.711 55.000 15.93 0.00 35.77 3.16
580 1063 5.123979 CCTTTGTCTCCACCTATGCTTAAAC 59.876 44.000 0.00 0.00 0.00 2.01
611 1094 9.817365 CTCTAACAATCATTAACTGAAGTTGTG 57.183 33.333 5.95 5.28 37.23 3.33
688 1184 4.419522 TGGCTTTCAAATTACTCGAAGC 57.580 40.909 0.00 0.00 0.00 3.86
690 1186 4.083324 TGGCTTTCAAATTACTCGAAGCTG 60.083 41.667 5.95 0.00 0.00 4.24
691 1187 4.083271 GGCTTTCAAATTACTCGAAGCTGT 60.083 41.667 5.95 0.00 0.00 4.40
692 1188 5.121768 GGCTTTCAAATTACTCGAAGCTGTA 59.878 40.000 5.95 0.00 0.00 2.74
693 1189 6.244275 GCTTTCAAATTACTCGAAGCTGTAG 58.756 40.000 0.00 0.00 0.00 2.74
694 1190 5.779806 TTCAAATTACTCGAAGCTGTAGC 57.220 39.130 0.00 0.00 42.49 3.58
698 1194 0.393402 TACTCGAAGCTGTAGCCCGA 60.393 55.000 14.93 14.93 43.38 5.14
700 1196 1.934220 CTCGAAGCTGTAGCCCGACA 61.934 60.000 12.71 0.00 43.38 4.35
710 1206 3.869065 TGTAGCCCGACAGAAAATAAGG 58.131 45.455 0.00 0.00 0.00 2.69
726 1229 5.843019 AATAAGGAAAACAGAGGTCCTGA 57.157 39.130 0.00 0.00 45.78 3.86
923 1430 4.760047 CTCTCCCCAACCACCGCG 62.760 72.222 0.00 0.00 0.00 6.46
951 1458 4.168291 CCAAGCTCCTCCCCTCGC 62.168 72.222 0.00 0.00 0.00 5.03
978 1485 1.915769 CCCCGCAATTCCCCCAAAA 60.916 57.895 0.00 0.00 0.00 2.44
983 1490 1.847798 GCAATTCCCCCAAAACCCCC 61.848 60.000 0.00 0.00 0.00 5.40
984 1491 1.229368 AATTCCCCCAAAACCCCCG 60.229 57.895 0.00 0.00 0.00 5.73
985 1492 1.741692 AATTCCCCCAAAACCCCCGA 61.742 55.000 0.00 0.00 0.00 5.14
986 1493 1.523818 ATTCCCCCAAAACCCCCGAT 61.524 55.000 0.00 0.00 0.00 4.18
988 1495 2.043349 CCCCAAAACCCCCGATCC 60.043 66.667 0.00 0.00 0.00 3.36
989 1496 2.439519 CCCAAAACCCCCGATCCG 60.440 66.667 0.00 0.00 0.00 4.18
990 1497 2.672295 CCAAAACCCCCGATCCGA 59.328 61.111 0.00 0.00 0.00 4.55
991 1498 1.226262 CCAAAACCCCCGATCCGAT 59.774 57.895 0.00 0.00 0.00 4.18
994 1501 1.991339 AAAACCCCCGATCCGATCCC 61.991 60.000 2.69 0.00 0.00 3.85
995 1502 4.956137 ACCCCCGATCCGATCCCC 62.956 72.222 2.69 0.00 0.00 4.81
1313 1832 0.833949 CTCCCCTCTCAGCTTTACCC 59.166 60.000 0.00 0.00 0.00 3.69
1314 1833 0.118346 TCCCCTCTCAGCTTTACCCA 59.882 55.000 0.00 0.00 0.00 4.51
1322 1841 3.508840 GCTTTACCCATGCGCGCT 61.509 61.111 33.29 14.40 0.00 5.92
1344 1863 0.165511 CTCTGCGAGCTGAACTTTGC 59.834 55.000 0.00 0.00 0.00 3.68
1345 1864 0.532640 TCTGCGAGCTGAACTTTGCA 60.533 50.000 0.00 0.00 37.62 4.08
1413 1932 1.225745 CCGCTGCGAGCTTTAAACG 60.226 57.895 25.45 0.00 39.60 3.60
1436 1955 2.132762 GGATGCTTATCGTTACCGTGG 58.867 52.381 0.00 0.00 35.01 4.94
1439 1958 1.545136 TGCTTATCGTTACCGTGGTCA 59.455 47.619 0.00 0.00 35.01 4.02
1447 1966 2.412325 CGTTACCGTGGTCAGAAATTGC 60.412 50.000 0.00 0.00 0.00 3.56
1450 1969 1.176527 CCGTGGTCAGAAATTGCCAT 58.823 50.000 0.00 0.00 36.07 4.40
1472 1991 0.031212 ATTGGGTATGGGCCTTTGGG 60.031 55.000 4.53 0.00 0.00 4.12
1478 1997 0.560688 TATGGGCCTTTGGGGGATTC 59.439 55.000 4.53 0.00 35.12 2.52
1479 1998 2.041922 GGGCCTTTGGGGGATTCC 60.042 66.667 0.84 0.00 35.12 3.01
1486 2005 2.292455 CCTTTGGGGGATTCCATGAAGT 60.292 50.000 4.80 0.00 36.58 3.01
1487 2006 2.530460 TTGGGGGATTCCATGAAGTG 57.470 50.000 4.80 0.00 36.58 3.16
1495 2014 4.818546 GGGATTCCATGAAGTGTGTATGAG 59.181 45.833 4.80 0.00 0.00 2.90
1540 2073 3.156511 TCTCAGCTGCTCATTTACTCG 57.843 47.619 9.47 0.00 0.00 4.18
1546 2079 2.094417 GCTGCTCATTTACTCGGTTGAC 59.906 50.000 0.00 0.00 0.00 3.18
1660 2211 3.687125 TGGTTAACCGCATGGATTTGTA 58.313 40.909 19.65 0.00 39.43 2.41
1670 2221 2.380084 TGGATTTGTAGCTCGTGGAC 57.620 50.000 0.00 0.00 0.00 4.02
1715 2266 2.063156 TTGTCGCATTCACCATTTGC 57.937 45.000 0.00 0.00 0.00 3.68
1716 2267 0.243365 TGTCGCATTCACCATTTGCC 59.757 50.000 0.00 0.00 32.76 4.52
1719 2270 0.527113 CGCATTCACCATTTGCCTCA 59.473 50.000 0.00 0.00 32.76 3.86
1751 2307 4.381612 CCTCCACAGTTTCGAGTATAAGCA 60.382 45.833 0.00 0.00 0.00 3.91
1771 2327 2.697147 AATGAGCGTGTGGTGGGCTT 62.697 55.000 0.00 0.00 37.10 4.35
1818 2374 2.038426 TGTACCCCATGGCGATCAATAG 59.962 50.000 6.09 0.00 33.59 1.73
1819 2375 0.401738 ACCCCATGGCGATCAATAGG 59.598 55.000 6.09 0.76 33.59 2.57
1820 2376 0.692476 CCCCATGGCGATCAATAGGA 59.308 55.000 6.09 0.00 0.00 2.94
1826 2382 3.319137 TGGCGATCAATAGGAGTATGC 57.681 47.619 0.00 0.00 0.00 3.14
1883 2445 2.301577 CAGTACTTGCTCCTGGTAGC 57.698 55.000 10.12 10.12 43.08 3.58
1886 2448 1.550976 GTACTTGCTCCTGGTAGCTGT 59.449 52.381 15.75 15.38 43.19 4.40
1905 2467 6.856895 AGCTGTAGTTGCCTGAATAATTTTC 58.143 36.000 0.00 0.00 0.00 2.29
2003 2565 1.765314 ACAGCACTTCACTGGAGTTCT 59.235 47.619 0.00 0.00 39.55 3.01
2107 2669 2.826128 TCTGCATACTGACTTCTTCCGT 59.174 45.455 0.00 0.00 0.00 4.69
2114 2676 3.718815 ACTGACTTCTTCCGTGTCTTTC 58.281 45.455 0.00 0.00 0.00 2.62
2133 2696 0.179086 CGCCCTTGTTTTGCCTTTGT 60.179 50.000 0.00 0.00 0.00 2.83
2181 2744 8.651588 GTTCATTCACAACTGATAGACAACTAG 58.348 37.037 0.00 0.00 31.78 2.57
2219 2782 4.038402 CCTGCCAAATGGATCAACTATTCC 59.962 45.833 2.98 0.00 37.39 3.01
2223 2786 5.279156 GCCAAATGGATCAACTATTCCCATC 60.279 44.000 2.98 0.00 36.67 3.51
2230 2793 6.953520 TGGATCAACTATTCCCATCTTGTTTT 59.046 34.615 0.00 0.00 0.00 2.43
2231 2794 7.122650 TGGATCAACTATTCCCATCTTGTTTTC 59.877 37.037 0.00 0.00 0.00 2.29
2245 2808 3.684103 TGTTTTCCTGCAAGTTACACG 57.316 42.857 0.00 0.00 0.00 4.49
2255 2818 6.320418 TCCTGCAAGTTACACGATAAGAGATA 59.680 38.462 0.00 0.00 0.00 1.98
2358 2921 9.237187 TGTGGCATTGAATTAATTACAACTCTA 57.763 29.630 0.00 0.19 0.00 2.43
2501 3064 0.178953 AGAAGCCCATTGCACTGGTT 60.179 50.000 20.56 10.12 44.83 3.67
2502 3065 0.681175 GAAGCCCATTGCACTGGTTT 59.319 50.000 20.56 14.40 44.83 3.27
2503 3066 0.393820 AAGCCCATTGCACTGGTTTG 59.606 50.000 20.56 7.76 44.83 2.93
2504 3067 0.760189 AGCCCATTGCACTGGTTTGT 60.760 50.000 20.56 0.73 44.83 2.83
2565 3128 4.202050 GCCTACCAATTATTTCTGCTGGTG 60.202 45.833 2.33 0.00 40.58 4.17
2599 3185 8.553459 AACATATGTCTGAACAGAACTTTAGG 57.447 34.615 9.23 1.79 39.20 2.69
2603 3189 4.654262 TGTCTGAACAGAACTTTAGGACCT 59.346 41.667 6.08 0.00 39.48 3.85
2642 3228 7.981225 ACATTTCTGTTTTCTTATGTGTTGCTT 59.019 29.630 0.00 0.00 28.70 3.91
2643 3229 9.462174 CATTTCTGTTTTCTTATGTGTTGCTTA 57.538 29.630 0.00 0.00 0.00 3.09
2784 3374 3.751175 TGCCTGTAAATAGAACACAGCAC 59.249 43.478 0.00 0.00 38.67 4.40
2785 3375 3.181520 GCCTGTAAATAGAACACAGCACG 60.182 47.826 0.00 0.00 38.67 5.34
2871 3468 4.087182 CTGCTATCCGGGGTAATCTAGAA 58.913 47.826 0.00 0.00 0.00 2.10
3011 3608 1.481363 TGTGAGTAACAACACGGACCA 59.519 47.619 0.00 0.00 39.52 4.02
3041 3640 5.888691 TCTGTTCTAGTCTACTTGAGCTG 57.111 43.478 0.00 8.63 32.30 4.24
3092 3692 4.272018 GCACAAGCACTGTCATCTAATAGG 59.728 45.833 0.00 0.00 41.58 2.57
3197 3797 9.586435 GTATGCCTGCTTTCTAATTGTTTAAAT 57.414 29.630 0.00 0.00 0.00 1.40
3269 3869 3.759618 TGAATGATGCACATGCTTTCTGA 59.240 39.130 5.31 0.00 42.66 3.27
3514 4114 9.860898 AGGAATTGAAATGATTAACTGTTTAGC 57.139 29.630 0.00 0.00 0.00 3.09
3542 4142 0.038892 GTGGTTGGCTGATTGCACTG 60.039 55.000 0.00 0.00 45.15 3.66
3665 4265 4.473444 TGATCTTGAGTTGAAAGGGCTTT 58.527 39.130 0.00 0.00 35.14 3.51
3666 4266 5.630121 TGATCTTGAGTTGAAAGGGCTTTA 58.370 37.500 0.00 0.00 32.11 1.85
3735 4337 5.542616 AGAATCTGAAGACTTGATTTGCG 57.457 39.130 0.00 0.00 31.49 4.85
3784 4386 4.081087 AGGGTACATGACAGTGGATGTAAC 60.081 45.833 18.03 18.03 44.17 2.50
3785 4387 4.323180 GGGTACATGACAGTGGATGTAACA 60.323 45.833 23.60 5.24 42.31 2.41
3844 4446 4.207891 TGCTCCTCTTCTTTGGTGTATC 57.792 45.455 0.00 0.00 0.00 2.24
3932 4534 2.815647 CTCGCCCTGTTCTTCCGC 60.816 66.667 0.00 0.00 0.00 5.54
3937 4539 1.071471 CCCTGTTCTTCCGCACTGT 59.929 57.895 0.00 0.00 0.00 3.55
3987 4589 5.415701 CCAGGACAATATAACATGGGTATGC 59.584 44.000 0.00 0.00 37.85 3.14
4088 4690 3.939592 GGTACTGAAGCATTTGGGTAGTC 59.060 47.826 0.00 0.00 0.00 2.59
4104 4710 4.141551 GGGTAGTCCTCCGTTCCAAAATAT 60.142 45.833 0.00 0.00 0.00 1.28
4114 4720 3.606346 CGTTCCAAAATATTTGTCGTGGC 59.394 43.478 10.57 0.14 0.00 5.01
4126 4732 3.462483 TGTCGTGGCTTTAGTTCTGAA 57.538 42.857 0.00 0.00 0.00 3.02
4151 4757 7.269316 ACTAAAACCACAACAAGTATTTTGGG 58.731 34.615 0.00 0.00 33.73 4.12
4153 4759 4.929819 ACCACAACAAGTATTTTGGGAC 57.070 40.909 0.00 0.00 0.00 4.46
4174 4780 5.340439 ACGGAGGGAGTAGTTATGAAAAG 57.660 43.478 0.00 0.00 0.00 2.27
4417 5083 7.391148 AAAATGTAGTGCTACTAACCCATTG 57.609 36.000 10.28 0.00 37.00 2.82
4532 5199 5.016051 ACATCAGTGCGAATACAAGAGAT 57.984 39.130 0.00 0.00 0.00 2.75
4550 5217 7.337942 ACAAGAGATTCACATAATCAAAGGGAC 59.662 37.037 0.00 0.00 0.00 4.46
4573 5240 7.073342 ACGATGTAAGTTTGAAAGATTAGCC 57.927 36.000 0.00 0.00 0.00 3.93
4968 5635 4.452733 GCGTCGGCAAGGTAGGCT 62.453 66.667 0.00 0.00 39.62 4.58
5047 5875 5.046529 CCTCTTCTGAAGATGTATTGGACG 58.953 45.833 19.61 5.03 36.82 4.79
5080 5908 8.615211 GTTGCTTGATGAATATCATGTAGACAA 58.385 33.333 0.00 0.00 42.60 3.18
5385 6213 8.621286 GGAAATGTTCCGTATGATTCATTACTT 58.379 33.333 4.14 0.00 40.59 2.24
5445 6273 1.679139 CATCCTTTGGCGATTGGCTA 58.321 50.000 8.17 0.00 42.94 3.93
5529 6357 4.203226 TCTTTGGTGTTGCATGTCTAACA 58.797 39.130 7.82 7.82 34.66 2.41
5541 6369 3.026630 TGTCTAACAGGAGTTCAAGCG 57.973 47.619 0.00 0.00 39.15 4.68
5996 6835 7.707624 TGGAATTCAATAGCAAAGTCAAGAT 57.292 32.000 7.93 0.00 0.00 2.40
6015 6854 6.936335 TCAAGATTGCAATTACTGAACAGAGA 59.064 34.615 14.33 0.00 0.00 3.10
6099 7003 0.527565 GTTCATGTGTGGGACCATGC 59.472 55.000 0.00 0.00 38.63 4.06
6176 7080 8.977412 TCTGTACCATGTATTCTTCTTCATGTA 58.023 33.333 0.00 0.00 36.81 2.29
6339 7358 4.970711 TCTTGGTAAACGGGTACAATGAA 58.029 39.130 0.00 0.00 0.00 2.57
6430 7449 2.046023 CACAGAATGGCGAGGGCA 60.046 61.111 0.00 0.00 43.62 5.36
6522 7541 1.141053 GGTGGTTCCTCTCAGTGTTGT 59.859 52.381 0.00 0.00 0.00 3.32
6552 7571 3.257393 CAAGAAGAATGAGAGGACACCG 58.743 50.000 0.00 0.00 0.00 4.94
6638 7657 2.104967 ACTATGATTCGTCGGTTGGGA 58.895 47.619 0.00 0.00 0.00 4.37
6650 7669 1.545841 GGTTGGGAATTGGGTGAGTC 58.454 55.000 0.00 0.00 0.00 3.36
6663 7682 1.132643 GGTGAGTCGTCGCTGTAGATT 59.867 52.381 0.00 0.00 33.34 2.40
6701 7720 2.103094 CAGGCTCCATCGTCCATTTAGA 59.897 50.000 0.00 0.00 0.00 2.10
6706 7725 4.691216 GCTCCATCGTCCATTTAGATTACC 59.309 45.833 0.00 0.00 0.00 2.85
6716 7735 5.104693 TCCATTTAGATTACCGTGGACATGT 60.105 40.000 0.00 0.00 31.24 3.21
6717 7736 5.588648 CCATTTAGATTACCGTGGACATGTT 59.411 40.000 0.00 0.00 0.00 2.71
6718 7737 6.094881 CCATTTAGATTACCGTGGACATGTTT 59.905 38.462 0.00 0.00 0.00 2.83
6719 7738 7.362574 CCATTTAGATTACCGTGGACATGTTTT 60.363 37.037 0.00 0.00 0.00 2.43
6720 7739 7.513371 TTTAGATTACCGTGGACATGTTTTT 57.487 32.000 0.00 0.00 0.00 1.94
6721 7740 5.371115 AGATTACCGTGGACATGTTTTTG 57.629 39.130 0.00 0.00 0.00 2.44
6722 7741 3.357166 TTACCGTGGACATGTTTTTGC 57.643 42.857 0.00 0.00 0.00 3.68
6723 7742 1.398692 ACCGTGGACATGTTTTTGCT 58.601 45.000 0.00 0.00 0.00 3.91
6724 7743 2.577700 ACCGTGGACATGTTTTTGCTA 58.422 42.857 0.00 0.00 0.00 3.49
6725 7744 2.952978 ACCGTGGACATGTTTTTGCTAA 59.047 40.909 0.00 0.00 0.00 3.09
6726 7745 3.572255 ACCGTGGACATGTTTTTGCTAAT 59.428 39.130 0.00 0.00 0.00 1.73
6727 7746 4.762765 ACCGTGGACATGTTTTTGCTAATA 59.237 37.500 0.00 0.00 0.00 0.98
6728 7747 5.417580 ACCGTGGACATGTTTTTGCTAATAT 59.582 36.000 0.00 0.00 0.00 1.28
6729 7748 5.971202 CCGTGGACATGTTTTTGCTAATATC 59.029 40.000 0.00 0.00 0.00 1.63
6730 7749 5.676744 CGTGGACATGTTTTTGCTAATATCG 59.323 40.000 0.00 0.00 0.00 2.92
6731 7750 6.551736 GTGGACATGTTTTTGCTAATATCGT 58.448 36.000 0.00 0.00 0.00 3.73
6732 7751 6.687105 GTGGACATGTTTTTGCTAATATCGTC 59.313 38.462 0.00 0.00 0.00 4.20
6733 7752 5.901884 GGACATGTTTTTGCTAATATCGTCG 59.098 40.000 0.00 0.00 0.00 5.12
6734 7753 6.237996 GGACATGTTTTTGCTAATATCGTCGA 60.238 38.462 0.00 0.00 0.00 4.20
6735 7754 6.705782 ACATGTTTTTGCTAATATCGTCGAG 58.294 36.000 0.00 0.00 0.00 4.04
6736 7755 5.712217 TGTTTTTGCTAATATCGTCGAGG 57.288 39.130 0.00 0.00 0.00 4.63
6737 7756 4.569162 TGTTTTTGCTAATATCGTCGAGGG 59.431 41.667 5.12 0.00 0.00 4.30
6738 7757 2.433868 TTGCTAATATCGTCGAGGGC 57.566 50.000 5.12 0.15 0.00 5.19
6739 7758 1.617322 TGCTAATATCGTCGAGGGCT 58.383 50.000 5.12 0.00 0.00 5.19
6740 7759 1.269723 TGCTAATATCGTCGAGGGCTG 59.730 52.381 5.12 0.00 0.00 4.85
6741 7760 1.402984 GCTAATATCGTCGAGGGCTGG 60.403 57.143 5.12 0.00 0.00 4.85
6742 7761 0.601558 TAATATCGTCGAGGGCTGGC 59.398 55.000 5.12 0.00 0.00 4.85
6743 7762 1.115930 AATATCGTCGAGGGCTGGCT 61.116 55.000 5.12 0.00 0.00 4.75
6744 7763 1.810606 ATATCGTCGAGGGCTGGCTG 61.811 60.000 5.12 0.00 0.00 4.85
6747 7766 4.767255 GTCGAGGGCTGGCTGTGG 62.767 72.222 0.00 0.00 0.00 4.17
6749 7768 4.463879 CGAGGGCTGGCTGTGGAG 62.464 72.222 0.00 0.00 0.00 3.86
6750 7769 3.005539 GAGGGCTGGCTGTGGAGA 61.006 66.667 0.00 0.00 0.00 3.71
6751 7770 2.530151 AGGGCTGGCTGTGGAGAA 60.530 61.111 0.00 0.00 0.00 2.87
6790 7845 0.322456 TTGGGCGCTAGCTGTTCATT 60.322 50.000 13.93 0.00 44.37 2.57
6812 7867 4.819105 TTACACAGGAGATGGGTTGTAG 57.181 45.455 0.00 0.00 45.97 2.74
6817 7872 3.780294 ACAGGAGATGGGTTGTAGCAATA 59.220 43.478 0.00 0.00 0.00 1.90
6853 7908 2.414559 CGCCAGTCTGCATTTCGAAAAT 60.415 45.455 15.66 0.84 0.00 1.82
6989 8045 2.092646 GGCACCATATACACACTTGGGA 60.093 50.000 0.00 0.00 33.39 4.37
7057 8113 5.477607 TTAGTAGCTTCACTGTGGCTTAA 57.522 39.130 15.08 7.63 37.50 1.85
7074 8137 3.425492 GCTTAAAGCTGCTTTCTTCTCCG 60.425 47.826 29.06 12.52 38.45 4.63
7149 8212 3.253188 GCGGGTGTTGCATTATATGACAT 59.747 43.478 0.00 0.00 0.00 3.06
7161 8224 8.959548 TGCATTATATGACATCCATTTGGTATC 58.040 33.333 0.00 0.00 36.71 2.24
7172 8235 6.795144 TCCATTTGGTATCTTTTGATGCAT 57.205 33.333 0.00 0.00 42.28 3.96
7242 8306 6.093495 TGACTGGCTGTAAGAAAATATTTCCG 59.907 38.462 0.10 0.00 34.07 4.30
7300 8369 5.132897 TCATGGGCTGTACATTTGTTTTC 57.867 39.130 0.00 0.00 0.00 2.29
7317 8386 7.483580 TTGTTTTCCCCTTTTCTTTTGTCTA 57.516 32.000 0.00 0.00 0.00 2.59
7318 8387 7.669089 TGTTTTCCCCTTTTCTTTTGTCTAT 57.331 32.000 0.00 0.00 0.00 1.98
7319 8388 7.722363 TGTTTTCCCCTTTTCTTTTGTCTATC 58.278 34.615 0.00 0.00 0.00 2.08
7353 10243 4.277672 GCTGGCATTCAGATATGTTCATGT 59.722 41.667 0.00 0.00 46.18 3.21
7401 10305 3.280197 TGTAATAGCTGCATTGCCTGA 57.720 42.857 6.12 0.00 0.00 3.86
7419 10323 5.163405 TGCCTGATAAAGCTAAGAGATCGTT 60.163 40.000 0.00 0.00 0.00 3.85
7552 10458 9.265901 TCACTGTTAGAGAAGAGAAGAAAAATG 57.734 33.333 0.00 0.00 30.50 2.32
7553 10459 9.050601 CACTGTTAGAGAAGAGAAGAAAAATGT 57.949 33.333 0.00 0.00 30.50 2.71
7554 10460 9.267084 ACTGTTAGAGAAGAGAAGAAAAATGTC 57.733 33.333 0.00 0.00 30.50 3.06
7555 10461 9.265901 CTGTTAGAGAAGAGAAGAAAAATGTCA 57.734 33.333 0.00 0.00 0.00 3.58
7563 10469 5.050972 AGAGAAGAAAAATGTCAACGTCGAC 60.051 40.000 5.18 5.18 36.40 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.013921 TCCTTTTCGACAAGCACACTTT 58.986 40.909 5.77 0.00 32.29 2.66
54 55 2.325583 TCCTTTTCGACAAGCACACT 57.674 45.000 5.77 0.00 0.00 3.55
80 81 2.937799 TCCATGTTAAATTCGCGGTACC 59.062 45.455 6.13 0.16 0.00 3.34
86 87 4.662145 CCTGTTCTCCATGTTAAATTCGC 58.338 43.478 0.00 0.00 0.00 4.70
106 107 1.227973 GGCCTAATTAGCGCTGCCT 60.228 57.895 22.90 6.16 35.99 4.75
114 115 6.939163 ACTTGATCTAAGCATGGCCTAATTAG 59.061 38.462 3.32 5.43 40.16 1.73
144 145 5.705441 TGCTCCACCTCAAAGTACATAAAAG 59.295 40.000 0.00 0.00 0.00 2.27
188 189 3.380479 TCGATAACTCGGCCTATTTGG 57.620 47.619 0.00 0.00 45.10 3.28
192 193 3.387050 ACCTTTTCGATAACTCGGCCTAT 59.613 43.478 0.00 0.00 45.10 2.57
214 215 6.046593 GTGGATATAATTGGTTGAGACGTGA 58.953 40.000 0.00 0.00 0.00 4.35
224 698 8.696374 CATATCTACTCCGTGGATATAATTGGT 58.304 37.037 11.03 0.00 42.14 3.67
234 708 8.929260 TTCTATTTACATATCTACTCCGTGGA 57.071 34.615 0.00 0.00 0.00 4.02
238 712 9.991388 GCTACTTCTATTTACATATCTACTCCG 57.009 37.037 0.00 0.00 0.00 4.63
247 721 7.273320 ACTCGCTGCTACTTCTATTTACATA 57.727 36.000 0.00 0.00 0.00 2.29
257 731 2.759538 ATCGTACTCGCTGCTACTTC 57.240 50.000 0.00 0.00 36.96 3.01
261 735 5.678132 TTACAATATCGTACTCGCTGCTA 57.322 39.130 0.00 0.00 36.96 3.49
262 736 4.563337 TTACAATATCGTACTCGCTGCT 57.437 40.909 0.00 0.00 36.96 4.24
263 737 5.824243 ATTTACAATATCGTACTCGCTGC 57.176 39.130 0.00 0.00 36.96 5.25
264 738 7.169308 AGGAAATTTACAATATCGTACTCGCTG 59.831 37.037 2.58 0.00 36.96 5.18
265 739 7.208080 AGGAAATTTACAATATCGTACTCGCT 58.792 34.615 2.58 0.00 36.96 4.93
266 740 7.404139 AGGAAATTTACAATATCGTACTCGC 57.596 36.000 2.58 0.00 36.96 5.03
343 817 3.184581 CGTACTCGCTGCTTCTTCTTTTT 59.815 43.478 0.00 0.00 0.00 1.94
344 818 2.731976 CGTACTCGCTGCTTCTTCTTTT 59.268 45.455 0.00 0.00 0.00 2.27
345 819 2.288273 ACGTACTCGCTGCTTCTTCTTT 60.288 45.455 0.00 0.00 41.18 2.52
346 820 1.269998 ACGTACTCGCTGCTTCTTCTT 59.730 47.619 0.00 0.00 41.18 2.52
347 821 0.882474 ACGTACTCGCTGCTTCTTCT 59.118 50.000 0.00 0.00 41.18 2.85
348 822 2.539346 TACGTACTCGCTGCTTCTTC 57.461 50.000 0.00 0.00 41.18 2.87
349 823 2.593257 GTTACGTACTCGCTGCTTCTT 58.407 47.619 0.00 0.00 41.18 2.52
350 824 1.465354 CGTTACGTACTCGCTGCTTCT 60.465 52.381 0.00 0.00 41.18 2.85
351 825 0.905839 CGTTACGTACTCGCTGCTTC 59.094 55.000 0.00 0.00 41.18 3.86
352 826 0.239347 ACGTTACGTACTCGCTGCTT 59.761 50.000 9.22 0.00 38.73 3.91
353 827 1.061711 CTACGTTACGTACTCGCTGCT 59.938 52.381 13.90 3.46 41.54 4.24
382 856 3.051880 ACCCATATCCCTTTGCCATTCTT 60.052 43.478 0.00 0.00 0.00 2.52
404 878 1.101635 CATCGTCTACGGAGGCTCCA 61.102 60.000 31.69 13.70 35.91 3.86
405 879 1.655329 CATCGTCTACGGAGGCTCC 59.345 63.158 24.06 24.06 40.29 4.70
409 883 2.331805 CGCCATCGTCTACGGAGG 59.668 66.667 0.00 6.27 40.29 4.30
410 884 2.353607 GCGCCATCGTCTACGGAG 60.354 66.667 0.00 0.00 40.29 4.63
414 888 1.286501 TGATTTGCGCCATCGTCTAC 58.713 50.000 4.18 0.00 38.14 2.59
418 892 1.382522 AAGATGATTTGCGCCATCGT 58.617 45.000 15.62 13.16 42.81 3.73
428 902 7.865706 AATAGTGAAGGCGTAAAGATGATTT 57.134 32.000 0.00 0.00 0.00 2.17
429 903 7.865706 AAATAGTGAAGGCGTAAAGATGATT 57.134 32.000 0.00 0.00 0.00 2.57
430 904 8.958119 TTAAATAGTGAAGGCGTAAAGATGAT 57.042 30.769 0.00 0.00 0.00 2.45
431 905 8.662141 GTTTAAATAGTGAAGGCGTAAAGATGA 58.338 33.333 0.00 0.00 0.00 2.92
443 919 9.893305 AAAATGAACTCGGTTTAAATAGTGAAG 57.107 29.630 0.00 0.00 0.00 3.02
475 956 6.381994 ACCTCTCGAACCACCTGTATTATTTA 59.618 38.462 0.00 0.00 0.00 1.40
501 982 0.958822 CGGTCTGGGTTTTTCCTTGG 59.041 55.000 0.00 0.00 36.25 3.61
502 983 1.975660 TCGGTCTGGGTTTTTCCTTG 58.024 50.000 0.00 0.00 36.25 3.61
520 1001 2.466205 GGTTGTGTCGCGTTGATTTTTC 59.534 45.455 5.77 0.00 0.00 2.29
521 1002 2.456010 GGTTGTGTCGCGTTGATTTTT 58.544 42.857 5.77 0.00 0.00 1.94
547 1028 2.882761 GTGGAGACAAAGGTGTTTACCC 59.117 50.000 0.00 0.00 45.99 3.69
555 1036 2.269940 AGCATAGGTGGAGACAAAGGT 58.730 47.619 0.00 0.00 46.06 3.50
557 1040 5.123979 GGTTTAAGCATAGGTGGAGACAAAG 59.876 44.000 0.00 0.00 46.06 2.77
580 1063 8.948631 TTCAGTTAATGATTGTTAGAGCTAGG 57.051 34.615 0.00 0.00 37.89 3.02
622 1106 9.060347 ACAACCTTAATGCTACATATCTGATTG 57.940 33.333 0.00 0.00 0.00 2.67
669 1165 5.035784 ACAGCTTCGAGTAATTTGAAAGC 57.964 39.130 0.00 0.00 0.00 3.51
670 1166 6.244275 GCTACAGCTTCGAGTAATTTGAAAG 58.756 40.000 0.00 0.00 38.21 2.62
681 1177 1.226717 GTCGGGCTACAGCTTCGAG 60.227 63.158 16.10 0.00 42.89 4.04
688 1184 3.871594 CCTTATTTTCTGTCGGGCTACAG 59.128 47.826 12.46 12.46 46.78 2.74
690 1186 4.133013 TCCTTATTTTCTGTCGGGCTAC 57.867 45.455 0.00 0.00 0.00 3.58
691 1187 4.829872 TTCCTTATTTTCTGTCGGGCTA 57.170 40.909 0.00 0.00 0.00 3.93
692 1188 3.713826 TTCCTTATTTTCTGTCGGGCT 57.286 42.857 0.00 0.00 0.00 5.19
693 1189 4.022676 TGTTTTCCTTATTTTCTGTCGGGC 60.023 41.667 0.00 0.00 0.00 6.13
694 1190 5.472137 TCTGTTTTCCTTATTTTCTGTCGGG 59.528 40.000 0.00 0.00 0.00 5.14
698 1194 6.490381 GGACCTCTGTTTTCCTTATTTTCTGT 59.510 38.462 0.00 0.00 0.00 3.41
700 1196 6.717084 CAGGACCTCTGTTTTCCTTATTTTCT 59.283 38.462 0.00 0.00 37.69 2.52
702 1198 6.490381 GTCAGGACCTCTGTTTTCCTTATTTT 59.510 38.462 0.00 0.00 43.76 1.82
703 1199 6.004574 GTCAGGACCTCTGTTTTCCTTATTT 58.995 40.000 0.00 0.00 43.76 1.40
704 1200 5.073144 TGTCAGGACCTCTGTTTTCCTTATT 59.927 40.000 0.00 0.00 43.76 1.40
706 1202 3.971305 TGTCAGGACCTCTGTTTTCCTTA 59.029 43.478 0.00 0.00 43.76 2.69
709 1205 2.495084 GTGTCAGGACCTCTGTTTTCC 58.505 52.381 0.00 0.00 43.76 3.13
710 1206 2.135933 CGTGTCAGGACCTCTGTTTTC 58.864 52.381 0.00 0.00 43.76 2.29
738 1241 3.012722 GGGGACGAATGTGGGGGA 61.013 66.667 0.00 0.00 0.00 4.81
739 1242 4.123545 GGGGGACGAATGTGGGGG 62.124 72.222 0.00 0.00 0.00 5.40
903 1410 3.637273 GGTGGTTGGGGAGAGCGT 61.637 66.667 0.00 0.00 0.00 5.07
904 1411 4.760047 CGGTGGTTGGGGAGAGCG 62.760 72.222 0.00 0.00 0.00 5.03
906 1413 4.760047 CGCGGTGGTTGGGGAGAG 62.760 72.222 0.00 0.00 0.00 3.20
974 1481 0.818040 GGATCGGATCGGGGGTTTTG 60.818 60.000 11.62 0.00 0.00 2.44
978 1485 4.956137 GGGGATCGGATCGGGGGT 62.956 72.222 11.62 0.00 0.00 4.95
984 1491 3.322466 ATGGGCGGGGATCGGATC 61.322 66.667 9.54 9.54 39.69 3.36
985 1492 3.640407 CATGGGCGGGGATCGGAT 61.640 66.667 0.00 0.00 39.69 4.18
996 1503 4.241555 ATCTCCGACGCCATGGGC 62.242 66.667 15.13 4.92 46.75 5.36
1088 1607 3.080121 CCTTGAGCGCCTCCTCCT 61.080 66.667 2.29 0.00 0.00 3.69
1290 1809 0.178861 AAAGCTGAGAGGGGAGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
1291 1810 0.716591 TAAAGCTGAGAGGGGAGGGA 59.283 55.000 0.00 0.00 0.00 4.20
1292 1811 0.833949 GTAAAGCTGAGAGGGGAGGG 59.166 60.000 0.00 0.00 0.00 4.30
1293 1812 0.833949 GGTAAAGCTGAGAGGGGAGG 59.166 60.000 0.00 0.00 0.00 4.30
1294 1813 0.833949 GGGTAAAGCTGAGAGGGGAG 59.166 60.000 0.00 0.00 0.00 4.30
1295 1814 0.118346 TGGGTAAAGCTGAGAGGGGA 59.882 55.000 0.00 0.00 0.00 4.81
1338 1857 1.113788 AGTTGTGTGGCATGCAAAGT 58.886 45.000 21.36 5.52 0.00 2.66
1365 1884 1.100510 TCCGGACATCGACACTAAGG 58.899 55.000 0.00 0.00 42.43 2.69
1436 1955 2.933906 CCAATGCATGGCAATTTCTGAC 59.066 45.455 0.00 0.00 43.62 3.51
1450 1969 0.042431 AAAGGCCCATACCCAATGCA 59.958 50.000 0.00 0.00 33.92 3.96
1472 1991 4.780815 TCATACACACTTCATGGAATCCC 58.219 43.478 0.00 0.00 0.00 3.85
1478 1997 3.376234 CCAAGCTCATACACACTTCATGG 59.624 47.826 0.00 0.00 0.00 3.66
1479 1998 4.256110 TCCAAGCTCATACACACTTCATG 58.744 43.478 0.00 0.00 0.00 3.07
1486 2005 3.368427 GCTACACTCCAAGCTCATACACA 60.368 47.826 0.00 0.00 35.80 3.72
1487 2006 3.190874 GCTACACTCCAAGCTCATACAC 58.809 50.000 0.00 0.00 35.80 2.90
1495 2014 0.749454 CCCATGGCTACACTCCAAGC 60.749 60.000 6.09 0.00 37.13 4.01
1540 2073 2.556622 ACATTCAATTGTCCCGTCAACC 59.443 45.455 5.13 0.00 0.00 3.77
1551 2084 4.142534 CCACAGCACTAGGACATTCAATTG 60.143 45.833 0.00 0.00 0.00 2.32
1660 2211 1.913451 CTCGAACGAGTCCACGAGCT 61.913 60.000 14.87 0.00 43.71 4.09
1670 2221 2.125912 CTGGTGCCCTCGAACGAG 60.126 66.667 15.94 15.94 41.63 4.18
1695 2246 2.402305 GCAAATGGTGAATGCGACAAA 58.598 42.857 0.00 0.00 0.00 2.83
1715 2266 4.911390 ACTGTGGAGGAATTAAACTGAGG 58.089 43.478 0.00 0.00 0.00 3.86
1716 2267 6.347725 CGAAACTGTGGAGGAATTAAACTGAG 60.348 42.308 0.00 0.00 0.00 3.35
1719 2270 5.617252 TCGAAACTGTGGAGGAATTAAACT 58.383 37.500 0.00 0.00 0.00 2.66
1751 2307 2.268076 GCCCACCACACGCTCATTT 61.268 57.895 0.00 0.00 0.00 2.32
1771 2327 4.655649 ACATTGTATGAGCAGACTATCCCA 59.344 41.667 0.00 0.00 0.00 4.37
1818 2374 5.914033 TCAAGTACATAACAGGCATACTCC 58.086 41.667 0.00 0.00 0.00 3.85
1819 2375 6.477033 CACTCAAGTACATAACAGGCATACTC 59.523 42.308 0.00 0.00 0.00 2.59
1820 2376 6.341316 CACTCAAGTACATAACAGGCATACT 58.659 40.000 0.00 0.00 0.00 2.12
1826 2382 3.367932 CACGCACTCAAGTACATAACAGG 59.632 47.826 0.00 0.00 0.00 4.00
1873 2435 1.134670 GGCAACTACAGCTACCAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
1905 2467 6.266103 ACAAAATCATCACCCAGCCAATATAG 59.734 38.462 0.00 0.00 0.00 1.31
2107 2669 1.202359 GCAAAACAAGGGCGAAAGACA 60.202 47.619 0.00 0.00 45.40 3.41
2114 2676 0.179086 ACAAAGGCAAAACAAGGGCG 60.179 50.000 0.00 0.00 34.32 6.13
2133 2696 1.561643 TGGACACCCAAAAGCAAACA 58.438 45.000 0.00 0.00 40.09 2.83
2181 2744 1.065551 GGCAGGCAAATATCCAACGAC 59.934 52.381 0.00 0.00 0.00 4.34
2219 2782 4.326504 AACTTGCAGGAAAACAAGATGG 57.673 40.909 1.40 0.00 44.89 3.51
2223 2786 4.035017 CGTGTAACTTGCAGGAAAACAAG 58.965 43.478 1.40 2.51 46.91 3.16
2230 2793 4.461431 TCTCTTATCGTGTAACTTGCAGGA 59.539 41.667 1.40 4.96 35.62 3.86
2231 2794 4.744570 TCTCTTATCGTGTAACTTGCAGG 58.255 43.478 0.00 0.00 31.75 4.85
2309 2872 1.885233 TGAATGCCGTTGATTCTTGCA 59.115 42.857 0.00 0.00 36.23 4.08
2501 3064 5.142061 TCAAGAGCATAAGGTACGAACAA 57.858 39.130 0.00 0.00 0.00 2.83
2502 3065 4.219944 ACTCAAGAGCATAAGGTACGAACA 59.780 41.667 0.00 0.00 0.00 3.18
2503 3066 4.745649 ACTCAAGAGCATAAGGTACGAAC 58.254 43.478 0.00 0.00 0.00 3.95
2504 3067 4.705507 AGACTCAAGAGCATAAGGTACGAA 59.294 41.667 0.00 0.00 0.00 3.85
2565 3128 9.045223 TCTGTTCAGACATATGTTACATAATGC 57.955 33.333 10.30 2.04 34.72 3.56
2599 3185 8.082242 ACAGAAATGTAAATGTAAAAGCAGGTC 58.918 33.333 0.00 0.00 0.00 3.85
2636 3222 4.948004 AGCCCTACAAGGTAAATAAGCAAC 59.052 41.667 0.00 0.00 31.93 4.17
2642 3228 4.855298 AAGCAGCCCTACAAGGTAAATA 57.145 40.909 0.00 0.00 31.93 1.40
2643 3229 3.739401 AAGCAGCCCTACAAGGTAAAT 57.261 42.857 0.00 0.00 31.93 1.40
2644 3230 3.328343 TGTAAGCAGCCCTACAAGGTAAA 59.672 43.478 3.00 0.00 31.93 2.01
2645 3231 2.907696 TGTAAGCAGCCCTACAAGGTAA 59.092 45.455 3.00 0.00 31.93 2.85
2784 3374 5.613358 AGAAATAAAAGTCAAGCTCCACG 57.387 39.130 0.00 0.00 0.00 4.94
2785 3375 9.346725 CATAAAGAAATAAAAGTCAAGCTCCAC 57.653 33.333 0.00 0.00 0.00 4.02
2998 3595 2.270352 ATGACATGGTCCGTGTTGTT 57.730 45.000 17.97 3.74 33.38 2.83
2999 3596 2.270352 AATGACATGGTCCGTGTTGT 57.730 45.000 17.97 7.26 33.38 3.32
3000 3597 2.813754 AGAAATGACATGGTCCGTGTTG 59.186 45.455 17.97 0.00 33.38 3.33
3005 3602 3.338249 AGAACAGAAATGACATGGTCCG 58.662 45.455 0.00 0.00 30.73 4.79
3011 3608 8.807118 TCAAGTAGACTAGAACAGAAATGACAT 58.193 33.333 0.00 0.00 0.00 3.06
3041 3640 0.178068 TCCGAGGTGCTGGAAATAGC 59.822 55.000 0.00 0.00 43.95 2.97
3080 3680 8.644374 ACTAGACAGAATCCCTATTAGATGAC 57.356 38.462 0.00 0.00 0.00 3.06
3197 3797 3.764237 AACTCAGCCTTCCTTAACGAA 57.236 42.857 0.00 0.00 0.00 3.85
3269 3869 9.010029 CAAGTCTACACATAAAATTACCAGGTT 57.990 33.333 0.00 0.00 0.00 3.50
3338 3938 5.691754 CCAAACCAGTATCTGCTTTTTGTTC 59.308 40.000 11.73 0.00 29.90 3.18
3444 4044 7.761704 GCAAAATATCTGTGAGACAGTAAGAGA 59.238 37.037 3.75 0.00 46.03 3.10
3514 4114 4.724074 ATCAGCCAACCACATGTAAATG 57.276 40.909 0.00 0.00 0.00 2.32
3665 4265 6.998074 CCCCAGTTCAAATATCAGCAATACTA 59.002 38.462 0.00 0.00 0.00 1.82
3666 4266 5.829924 CCCCAGTTCAAATATCAGCAATACT 59.170 40.000 0.00 0.00 0.00 2.12
3784 4386 3.504863 CTTTGCAAATGTCGGATTCCTG 58.495 45.455 13.23 0.00 0.00 3.86
3785 4387 2.094545 GCTTTGCAAATGTCGGATTCCT 60.095 45.455 13.23 0.00 0.00 3.36
3844 4446 2.159430 TGTAGCAAGCAATACAACAGCG 59.841 45.455 0.00 0.00 0.00 5.18
3894 4496 5.358298 AGTGAAAAGACATTAGAAACGCC 57.642 39.130 0.00 0.00 0.00 5.68
3987 4589 1.488390 AATAGCCCAAATGCTGGTGG 58.512 50.000 0.00 0.00 44.76 4.61
4083 4685 6.373495 ACAAATATTTTGGAACGGAGGACTAC 59.627 38.462 0.00 0.00 0.00 2.73
4088 4690 4.155280 ACGACAAATATTTTGGAACGGAGG 59.845 41.667 0.00 0.00 0.00 4.30
4104 4710 3.799366 TCAGAACTAAAGCCACGACAAA 58.201 40.909 0.00 0.00 0.00 2.83
4126 4732 7.124448 TCCCAAAATACTTGTTGTGGTTTTAGT 59.876 33.333 0.00 0.00 31.42 2.24
4137 4743 3.418047 CCTCCGTCCCAAAATACTTGTT 58.582 45.455 0.00 0.00 0.00 2.83
4138 4744 2.290705 CCCTCCGTCCCAAAATACTTGT 60.291 50.000 0.00 0.00 0.00 3.16
4151 4757 4.996788 TTTCATAACTACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
4153 4759 4.161754 ACCTTTTCATAACTACTCCCTCCG 59.838 45.833 0.00 0.00 0.00 4.63
4174 4780 1.547372 ACATGCTTGCTGGATTCAACC 59.453 47.619 0.00 0.00 0.00 3.77
4309 4975 6.935741 ATTTGCCATGTACGTAACACATAT 57.064 33.333 0.00 0.00 42.09 1.78
4398 5064 3.203716 GGCAATGGGTTAGTAGCACTAC 58.796 50.000 0.00 0.00 36.35 2.73
4409 5075 1.427368 TCTAACTGGTGGCAATGGGTT 59.573 47.619 0.00 0.00 0.00 4.11
4410 5076 1.004745 CTCTAACTGGTGGCAATGGGT 59.995 52.381 0.00 0.00 0.00 4.51
4413 5079 3.057969 TGTCTCTAACTGGTGGCAATG 57.942 47.619 0.00 0.00 0.00 2.82
4417 5083 1.443802 GCTTGTCTCTAACTGGTGGC 58.556 55.000 0.00 0.00 0.00 5.01
4532 5199 5.496556 ACATCGTCCCTTTGATTATGTGAA 58.503 37.500 0.00 0.00 32.83 3.18
4550 5217 6.035650 TCGGCTAATCTTTCAAACTTACATCG 59.964 38.462 0.00 0.00 0.00 3.84
4573 5240 3.637432 TGCAGCAAACCAAATTAACTCG 58.363 40.909 0.00 0.00 0.00 4.18
4655 5322 2.855209 TGGGATTGCAACATTTTGGG 57.145 45.000 0.00 0.00 32.81 4.12
4859 5526 1.728971 CGAACAGGTCTGACAATCTGC 59.271 52.381 10.38 0.00 0.00 4.26
4968 5635 5.255687 AGGCACATATGACATGACTGAAAA 58.744 37.500 10.38 0.00 35.60 2.29
5047 5875 9.188588 CATGATATTCATCAAGCAACATAAACC 57.811 33.333 0.00 0.00 44.27 3.27
5114 5942 2.275318 GCACAGGCTCTTCATAGTGTC 58.725 52.381 0.00 0.00 36.96 3.67
5445 6273 6.823689 CAGTATGGTAAACAACAGAATAGCCT 59.176 38.462 0.00 0.00 0.00 4.58
5529 6357 0.608640 CCTGGTACGCTTGAACTCCT 59.391 55.000 0.00 0.00 0.00 3.69
5575 6404 7.718525 TGGTTTTCTTAGGTAAAAACATCCAC 58.281 34.615 11.47 0.00 43.74 4.02
5577 6406 8.418662 ACTTGGTTTTCTTAGGTAAAAACATCC 58.581 33.333 11.47 0.00 41.69 3.51
5944 6783 9.357652 ACATGATACAGTTTTATTGACAAATGC 57.642 29.630 0.00 0.00 0.00 3.56
6015 6854 3.554934 TCGCATCTGGCCTTGATTTTAT 58.445 40.909 3.32 0.00 40.31 1.40
6099 7003 6.268847 AGAGGCTATAACTACTGGATGGAAAG 59.731 42.308 0.00 0.00 0.00 2.62
6176 7080 6.156949 TGCTATCTACAAGGGAGAGAAACAAT 59.843 38.462 0.00 0.00 0.00 2.71
6179 7083 5.599999 TGCTATCTACAAGGGAGAGAAAC 57.400 43.478 0.00 0.00 0.00 2.78
6339 7358 3.329688 CTCGAGCCGCTCAACGTCT 62.330 63.158 20.22 0.00 41.42 4.18
6522 7541 3.071457 TCTCATTCTTCTTGCTGTGGTCA 59.929 43.478 0.00 0.00 0.00 4.02
6567 7586 3.365265 CTGTTGCGTCCAAGGCCC 61.365 66.667 0.00 0.00 0.00 5.80
6579 7598 2.594303 TGCCGGGAAGCACTGTTG 60.594 61.111 2.18 0.00 38.00 3.33
6638 7657 0.670546 CAGCGACGACTCACCCAATT 60.671 55.000 0.00 0.00 0.00 2.32
6650 7669 1.838345 CGTGTACAATCTACAGCGACG 59.162 52.381 0.00 0.00 0.00 5.12
6663 7682 1.269569 CCTGAGCAGTGAACGTGTACA 60.270 52.381 0.00 0.00 0.00 2.90
6701 7720 3.572255 AGCAAAAACATGTCCACGGTAAT 59.428 39.130 0.00 0.00 0.00 1.89
6706 7725 5.676744 CGATATTAGCAAAAACATGTCCACG 59.323 40.000 0.00 0.00 0.00 4.94
6716 7735 3.558418 GCCCTCGACGATATTAGCAAAAA 59.442 43.478 0.00 0.00 0.00 1.94
6717 7736 3.128349 GCCCTCGACGATATTAGCAAAA 58.872 45.455 0.00 0.00 0.00 2.44
6718 7737 2.364324 AGCCCTCGACGATATTAGCAAA 59.636 45.455 0.00 0.00 0.00 3.68
6719 7738 1.961394 AGCCCTCGACGATATTAGCAA 59.039 47.619 0.00 0.00 0.00 3.91
6720 7739 1.269723 CAGCCCTCGACGATATTAGCA 59.730 52.381 0.00 0.00 0.00 3.49
6721 7740 1.402984 CCAGCCCTCGACGATATTAGC 60.403 57.143 0.00 0.00 0.00 3.09
6722 7741 1.402984 GCCAGCCCTCGACGATATTAG 60.403 57.143 0.00 0.00 0.00 1.73
6723 7742 0.601558 GCCAGCCCTCGACGATATTA 59.398 55.000 0.00 0.00 0.00 0.98
6724 7743 1.115930 AGCCAGCCCTCGACGATATT 61.116 55.000 0.00 0.00 0.00 1.28
6725 7744 1.531840 AGCCAGCCCTCGACGATAT 60.532 57.895 0.00 0.00 0.00 1.63
6726 7745 2.123854 AGCCAGCCCTCGACGATA 60.124 61.111 0.00 0.00 0.00 2.92
6727 7746 3.842923 CAGCCAGCCCTCGACGAT 61.843 66.667 0.00 0.00 0.00 3.73
6730 7749 4.767255 CCACAGCCAGCCCTCGAC 62.767 72.222 0.00 0.00 0.00 4.20
6732 7751 4.463879 CTCCACAGCCAGCCCTCG 62.464 72.222 0.00 0.00 0.00 4.63
6733 7752 1.919600 ATTCTCCACAGCCAGCCCTC 61.920 60.000 0.00 0.00 0.00 4.30
6734 7753 1.504275 AATTCTCCACAGCCAGCCCT 61.504 55.000 0.00 0.00 0.00 5.19
6735 7754 1.000396 AATTCTCCACAGCCAGCCC 60.000 57.895 0.00 0.00 0.00 5.19
6736 7755 1.372087 CGAATTCTCCACAGCCAGCC 61.372 60.000 3.52 0.00 0.00 4.85
6737 7756 1.372087 CCGAATTCTCCACAGCCAGC 61.372 60.000 3.52 0.00 0.00 4.85
6738 7757 0.250234 TCCGAATTCTCCACAGCCAG 59.750 55.000 3.52 0.00 0.00 4.85
6739 7758 0.036388 GTCCGAATTCTCCACAGCCA 60.036 55.000 3.52 0.00 0.00 4.75
6740 7759 0.036388 TGTCCGAATTCTCCACAGCC 60.036 55.000 3.52 0.00 0.00 4.85
6741 7760 1.667724 CATGTCCGAATTCTCCACAGC 59.332 52.381 3.52 0.00 0.00 4.40
6742 7761 1.667724 GCATGTCCGAATTCTCCACAG 59.332 52.381 3.52 0.39 0.00 3.66
6743 7762 1.278985 AGCATGTCCGAATTCTCCACA 59.721 47.619 3.52 3.88 0.00 4.17
6744 7763 1.936547 GAGCATGTCCGAATTCTCCAC 59.063 52.381 3.52 0.00 0.00 4.02
6745 7764 1.554617 TGAGCATGTCCGAATTCTCCA 59.445 47.619 3.52 0.00 0.00 3.86
6746 7765 2.315925 TGAGCATGTCCGAATTCTCC 57.684 50.000 3.52 0.00 0.00 3.71
6747 7766 5.477510 AGATATGAGCATGTCCGAATTCTC 58.522 41.667 3.52 0.00 30.34 2.87
6748 7767 5.480642 AGATATGAGCATGTCCGAATTCT 57.519 39.130 3.52 0.00 30.34 2.40
6749 7768 6.369005 CAAAGATATGAGCATGTCCGAATTC 58.631 40.000 3.95 0.00 30.34 2.17
6750 7769 5.240183 CCAAAGATATGAGCATGTCCGAATT 59.760 40.000 3.95 0.00 30.34 2.17
6751 7770 4.758674 CCAAAGATATGAGCATGTCCGAAT 59.241 41.667 3.95 0.00 30.34 3.34
6790 7845 4.564821 GCTACAACCCATCTCCTGTGTAAA 60.565 45.833 0.00 0.00 0.00 2.01
6812 7867 2.622436 GGATATCCGTGAGCCTATTGC 58.378 52.381 5.86 0.00 41.71 3.56
6853 7908 8.301252 TGCTATCCTGTTCTACATAGTAACAA 57.699 34.615 0.00 0.00 33.05 2.83
7057 8113 2.262423 AACGGAGAAGAAAGCAGCTT 57.738 45.000 0.21 0.21 0.00 3.74
7074 8137 5.938322 TCCTACGCAAAATGAATGAGAAAC 58.062 37.500 0.00 0.00 0.00 2.78
7149 8212 6.795144 ATGCATCAAAAGATACCAAATGGA 57.205 33.333 6.42 0.00 38.94 3.41
7161 8224 8.531622 TTATACAAACACCAATGCATCAAAAG 57.468 30.769 0.00 0.00 0.00 2.27
7164 8227 7.598118 CAGTTTATACAAACACCAATGCATCAA 59.402 33.333 0.00 0.00 45.44 2.57
7172 8235 8.788806 CCAGAATACAGTTTATACAAACACCAA 58.211 33.333 0.00 0.00 45.44 3.67
7242 8306 6.609237 AAGAAAAAGGAAAAATGCAGAAGC 57.391 33.333 0.00 0.00 42.57 3.86
7300 8369 7.201857 GGATGATGATAGACAAAAGAAAAGGGG 60.202 40.741 0.00 0.00 0.00 4.79
7319 8388 1.880675 GAATGCCAGCAGAGGATGATG 59.119 52.381 0.00 0.00 45.15 3.07
7363 10253 9.840427 GCTATTACATTGTGTACACAGAAAAAT 57.160 29.630 26.52 23.58 42.94 1.82
7372 10262 6.784176 CAATGCAGCTATTACATTGTGTACA 58.216 36.000 16.74 0.00 43.53 2.90
7379 10269 4.209538 TCAGGCAATGCAGCTATTACATT 58.790 39.130 7.79 0.00 34.42 2.71
7401 10305 6.879400 AGGTTGAACGATCTCTTAGCTTTAT 58.121 36.000 0.00 0.00 0.00 1.40
7419 10323 6.183361 TGTTGTGTTATCCCTCTTTAGGTTGA 60.183 38.462 0.00 0.00 41.89 3.18
7474 10380 6.653320 TGAATTCTAAAACGACCTACATTGCT 59.347 34.615 7.05 0.00 0.00 3.91
7542 10448 4.828704 TGTCGACGTTGACATTTTTCTTC 58.171 39.130 30.49 5.28 43.62 2.87
7552 10458 1.000884 TTGGTGTTGTCGACGTTGAC 58.999 50.000 26.13 26.13 39.37 3.18
7553 10459 1.282817 CTTGGTGTTGTCGACGTTGA 58.717 50.000 11.62 0.00 0.00 3.18
7554 10460 0.315869 GCTTGGTGTTGTCGACGTTG 60.316 55.000 11.62 0.00 0.00 4.10
7555 10461 1.433837 GGCTTGGTGTTGTCGACGTT 61.434 55.000 11.62 0.00 0.00 3.99
7563 10469 3.651803 TTTAAATCCGGCTTGGTGTTG 57.348 42.857 0.00 0.00 39.52 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.