Multiple sequence alignment - TraesCS7B01G433600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G433600 chr7B 100.000 3419 0 0 1 3419 700905722 700902304 0.000000e+00 6314.0
1 TraesCS7B01G433600 chr7B 78.548 1198 200 34 1359 2529 701037404 701038571 0.000000e+00 736.0
2 TraesCS7B01G433600 chr7B 72.961 1594 331 76 1359 2893 672770182 672771734 6.680000e-127 464.0
3 TraesCS7B01G433600 chr7A 90.729 2222 151 33 1234 3418 701570586 701568383 0.000000e+00 2911.0
4 TraesCS7B01G433600 chr7A 77.336 1584 240 75 1359 2893 701604952 701603439 0.000000e+00 826.0
5 TraesCS7B01G433600 chr7A 78.545 1086 197 27 1824 2894 701599547 701598483 0.000000e+00 682.0
6 TraesCS7B01G433600 chr7A 72.926 1603 327 74 1359 2893 688345482 688347045 1.120000e-124 457.0
7 TraesCS7B01G433600 chr7A 72.106 1287 283 55 1640 2890 702237726 702238972 5.510000e-83 318.0
8 TraesCS7B01G433600 chr7A 87.500 144 14 4 896 1037 507014993 507015134 2.730000e-36 163.0
9 TraesCS7B01G433600 chr7A 86.275 102 6 2 1034 1134 701590131 701590037 1.680000e-18 104.0
10 TraesCS7B01G433600 chr7A 90.741 54 2 2 1146 1197 701600080 701600028 6.120000e-08 69.4
11 TraesCS7B01G433600 chr7D 91.222 2176 124 30 1288 3418 611635404 611633251 0.000000e+00 2898.0
12 TraesCS7B01G433600 chr7D 82.883 777 108 20 59 820 611643703 611642937 0.000000e+00 675.0
13 TraesCS7B01G433600 chr7D 72.854 1584 337 66 1359 2893 611857444 611855905 1.120000e-124 457.0
14 TraesCS7B01G433600 chr7D 72.796 1452 314 65 1473 2889 612286905 612288310 5.280000e-113 418.0
15 TraesCS7B01G433600 chr7D 74.807 909 189 33 1997 2890 595348316 595349199 1.160000e-99 374.0
16 TraesCS7B01G433600 chr7D 72.368 1292 281 56 1640 2893 611871144 611869891 4.230000e-89 339.0
17 TraesCS7B01G433600 chr7D 71.945 1301 293 53 1640 2893 612404072 612405347 7.120000e-82 315.0
18 TraesCS7B01G433600 chr7D 73.185 854 175 34 2055 2891 612428577 612429393 3.380000e-65 259.0
19 TraesCS7B01G433600 chr7D 83.486 109 18 0 1359 1467 101574703 101574595 6.040000e-18 102.0
20 TraesCS7B01G433600 chr7D 100.000 28 0 0 1235 1262 611640951 611640924 6.000000e-03 52.8
21 TraesCS7B01G433600 chr2D 74.822 1541 312 53 1360 2869 420739305 420740800 8.050000e-176 627.0
22 TraesCS7B01G433600 chr2D 96.429 56 2 0 1034 1089 631288914 631288969 3.630000e-15 93.5
23 TraesCS7B01G433600 chr2D 78.571 140 11 7 896 1033 627929808 627929930 1.320000e-09 75.0
24 TraesCS7B01G433600 chr5B 73.641 1582 310 79 1360 2894 689180330 689178809 2.350000e-141 512.0
25 TraesCS7B01G433600 chr2A 74.617 1111 218 41 1359 2441 566456542 566457616 6.780000e-117 431.0
26 TraesCS7B01G433600 chr2A 73.360 1235 250 53 1359 2548 698176718 698177918 5.350000e-103 385.0
27 TraesCS7B01G433600 chr3B 78.261 368 77 3 252 617 637664078 637664444 2.050000e-57 233.0
28 TraesCS7B01G433600 chr3B 78.261 368 76 4 252 617 637679963 637680328 2.050000e-57 233.0
29 TraesCS7B01G433600 chr1D 74.905 526 114 13 333 845 432632518 432631998 1.230000e-54 224.0
30 TraesCS7B01G433600 chr1D 90.667 75 5 2 1034 1108 432631885 432631813 7.810000e-17 99.0
31 TraesCS7B01G433600 chr5D 72.888 509 106 22 1472 1961 546001802 546001307 2.750000e-31 147.0
32 TraesCS7B01G433600 chr5D 81.553 103 13 3 135 237 247783857 247783953 2.830000e-11 80.5
33 TraesCS7B01G433600 chr6B 96.552 87 2 1 947 1033 613310570 613310655 3.560000e-30 143.0
34 TraesCS7B01G433600 chr1A 74.806 258 52 11 499 748 550896298 550896550 1.680000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G433600 chr7B 700902304 700905722 3418 True 6314.0 6314 100.000000 1 3419 1 chr7B.!!$R1 3418
1 TraesCS7B01G433600 chr7B 701037404 701038571 1167 False 736.0 736 78.548000 1359 2529 1 chr7B.!!$F2 1170
2 TraesCS7B01G433600 chr7B 672770182 672771734 1552 False 464.0 464 72.961000 1359 2893 1 chr7B.!!$F1 1534
3 TraesCS7B01G433600 chr7A 701568383 701570586 2203 True 2911.0 2911 90.729000 1234 3418 1 chr7A.!!$R1 2184
4 TraesCS7B01G433600 chr7A 701598483 701604952 6469 True 525.8 826 82.207333 1146 2894 3 chr7A.!!$R3 1748
5 TraesCS7B01G433600 chr7A 688345482 688347045 1563 False 457.0 457 72.926000 1359 2893 1 chr7A.!!$F2 1534
6 TraesCS7B01G433600 chr7A 702237726 702238972 1246 False 318.0 318 72.106000 1640 2890 1 chr7A.!!$F3 1250
7 TraesCS7B01G433600 chr7D 611633251 611635404 2153 True 2898.0 2898 91.222000 1288 3418 1 chr7D.!!$R2 2130
8 TraesCS7B01G433600 chr7D 611855905 611857444 1539 True 457.0 457 72.854000 1359 2893 1 chr7D.!!$R3 1534
9 TraesCS7B01G433600 chr7D 612286905 612288310 1405 False 418.0 418 72.796000 1473 2889 1 chr7D.!!$F2 1416
10 TraesCS7B01G433600 chr7D 595348316 595349199 883 False 374.0 374 74.807000 1997 2890 1 chr7D.!!$F1 893
11 TraesCS7B01G433600 chr7D 611640924 611643703 2779 True 363.9 675 91.441500 59 1262 2 chr7D.!!$R5 1203
12 TraesCS7B01G433600 chr7D 611869891 611871144 1253 True 339.0 339 72.368000 1640 2893 1 chr7D.!!$R4 1253
13 TraesCS7B01G433600 chr7D 612404072 612405347 1275 False 315.0 315 71.945000 1640 2893 1 chr7D.!!$F3 1253
14 TraesCS7B01G433600 chr7D 612428577 612429393 816 False 259.0 259 73.185000 2055 2891 1 chr7D.!!$F4 836
15 TraesCS7B01G433600 chr2D 420739305 420740800 1495 False 627.0 627 74.822000 1360 2869 1 chr2D.!!$F1 1509
16 TraesCS7B01G433600 chr5B 689178809 689180330 1521 True 512.0 512 73.641000 1360 2894 1 chr5B.!!$R1 1534
17 TraesCS7B01G433600 chr2A 566456542 566457616 1074 False 431.0 431 74.617000 1359 2441 1 chr2A.!!$F1 1082
18 TraesCS7B01G433600 chr2A 698176718 698177918 1200 False 385.0 385 73.360000 1359 2548 1 chr2A.!!$F2 1189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
985 997 0.035739 TAACGAAACCCACCTCAGCC 59.964 55.0 0.00 0.0 0.0 4.85 F
996 1008 0.042731 ACCTCAGCCTAGCCCTGTAA 59.957 55.0 8.06 0.0 0.0 2.41 F
1030 1042 0.307760 GCCCGTGTATGTAGCATTGC 59.692 55.0 0.00 0.0 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 3799 0.251916 TTGGTACAGGCGGAAGATGG 59.748 55.000 0.0 0.0 42.39 3.51 R
2321 4248 0.868406 CAAAGGTGTGCTCTTCGGTC 59.132 55.000 0.0 0.0 0.00 4.79 R
2779 9680 2.276201 TGCGGATTCATCGTTACTTGG 58.724 47.619 0.0 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.308371 TCATTTCTAACCGAACCTCAAAAC 57.692 37.500 0.00 0.00 0.00 2.43
24 25 6.059484 TCATTTCTAACCGAACCTCAAAACT 58.941 36.000 0.00 0.00 0.00 2.66
25 26 6.544564 TCATTTCTAACCGAACCTCAAAACTT 59.455 34.615 0.00 0.00 0.00 2.66
26 27 7.716123 TCATTTCTAACCGAACCTCAAAACTTA 59.284 33.333 0.00 0.00 0.00 2.24
27 28 7.862512 TTTCTAACCGAACCTCAAAACTTAA 57.137 32.000 0.00 0.00 0.00 1.85
28 29 6.849588 TCTAACCGAACCTCAAAACTTAAC 57.150 37.500 0.00 0.00 0.00 2.01
29 30 4.541085 AACCGAACCTCAAAACTTAACG 57.459 40.909 0.00 0.00 0.00 3.18
30 31 3.534554 ACCGAACCTCAAAACTTAACGT 58.465 40.909 0.00 0.00 0.00 3.99
31 32 4.692228 ACCGAACCTCAAAACTTAACGTA 58.308 39.130 0.00 0.00 0.00 3.57
32 33 5.299949 ACCGAACCTCAAAACTTAACGTAT 58.700 37.500 0.00 0.00 0.00 3.06
33 34 5.759763 ACCGAACCTCAAAACTTAACGTATT 59.240 36.000 0.00 0.00 0.00 1.89
34 35 6.928492 ACCGAACCTCAAAACTTAACGTATTA 59.072 34.615 0.00 0.00 0.00 0.98
35 36 7.440856 ACCGAACCTCAAAACTTAACGTATTAA 59.559 33.333 0.00 0.00 0.00 1.40
36 37 8.281893 CCGAACCTCAAAACTTAACGTATTAAA 58.718 33.333 0.00 0.00 29.82 1.52
37 38 9.649024 CGAACCTCAAAACTTAACGTATTAAAA 57.351 29.630 0.00 0.00 29.82 1.52
83 84 8.441608 CAAAATGAAAGACACATGAACACAAAA 58.558 29.630 0.00 0.00 0.00 2.44
88 89 4.133820 AGACACATGAACACAAAATCGGA 58.866 39.130 0.00 0.00 0.00 4.55
89 90 4.024048 AGACACATGAACACAAAATCGGAC 60.024 41.667 0.00 0.00 0.00 4.79
90 91 3.882888 ACACATGAACACAAAATCGGACT 59.117 39.130 0.00 0.00 0.00 3.85
91 92 5.060506 ACACATGAACACAAAATCGGACTA 58.939 37.500 0.00 0.00 0.00 2.59
94 95 7.083858 CACATGAACACAAAATCGGACTAAAT 58.916 34.615 0.00 0.00 0.00 1.40
96 97 8.788806 ACATGAACACAAAATCGGACTAAATTA 58.211 29.630 0.00 0.00 0.00 1.40
101 104 8.385898 ACACAAAATCGGACTAAATTAGTTCA 57.614 30.769 11.62 0.20 39.59 3.18
144 149 8.746530 ACTTGAATGACATCTCAAATTTATGCT 58.253 29.630 11.58 0.00 31.41 3.79
169 174 9.896263 CTAGAAATTCGAACTATAACCTAGTCC 57.104 37.037 0.00 0.00 0.00 3.85
177 182 6.292811 CGAACTATAACCTAGTCCGACTCTTC 60.293 46.154 3.74 0.00 26.13 2.87
179 184 2.599408 AACCTAGTCCGACTCTTCCA 57.401 50.000 3.74 0.00 0.00 3.53
180 185 2.599408 ACCTAGTCCGACTCTTCCAA 57.401 50.000 3.74 0.00 0.00 3.53
181 186 2.885616 ACCTAGTCCGACTCTTCCAAA 58.114 47.619 3.74 0.00 0.00 3.28
196 201 1.073923 TCCAAAAGCTCCTTCCACTCC 59.926 52.381 0.00 0.00 0.00 3.85
202 207 0.251634 GCTCCTTCCACTCCCTTCTG 59.748 60.000 0.00 0.00 0.00 3.02
209 214 1.072331 TCCACTCCCTTCTGCTCAAAC 59.928 52.381 0.00 0.00 0.00 2.93
212 217 0.674895 CTCCCTTCTGCTCAAACCGG 60.675 60.000 0.00 0.00 0.00 5.28
226 231 2.189257 CCGGCGATCATTGGGTCA 59.811 61.111 9.30 0.00 0.00 4.02
244 249 4.144703 GGGTCGTCGCCTCCTTCC 62.145 72.222 5.82 0.00 0.00 3.46
247 252 2.035155 TCGTCGCCTCCTTCCTCA 59.965 61.111 0.00 0.00 0.00 3.86
254 259 0.531753 GCCTCCTTCCTCATTCGAGC 60.532 60.000 0.00 0.00 38.00 5.03
258 263 0.528684 CCTTCCTCATTCGAGCGGTC 60.529 60.000 4.06 4.06 38.00 4.79
278 283 2.159240 TCGATGACATTGGTCTTCCTCG 60.159 50.000 2.75 0.00 44.61 4.63
311 317 0.613260 TACAGTCTGCAATCCGCCTT 59.387 50.000 0.00 0.00 41.33 4.35
314 320 0.392193 AGTCTGCAATCCGCCTTGAG 60.392 55.000 0.00 0.00 41.33 3.02
318 324 3.056313 GCAATCCGCCTTGAGGTGC 62.056 63.158 5.06 0.00 44.11 5.01
338 346 1.745489 CCAGGTAGCTTTGGCGGAC 60.745 63.158 0.00 0.00 44.37 4.79
343 351 1.916273 TAGCTTTGGCGGACCTCCA 60.916 57.895 0.00 0.00 44.37 3.86
352 360 1.895020 GCGGACCTCCACCATGTACA 61.895 60.000 0.00 0.00 35.14 2.90
353 361 0.175760 CGGACCTCCACCATGTACAG 59.824 60.000 0.33 0.00 35.14 2.74
357 365 0.179100 CCTCCACCATGTACAGCTCG 60.179 60.000 0.33 0.00 0.00 5.03
358 366 0.807667 CTCCACCATGTACAGCTCGC 60.808 60.000 0.33 0.00 0.00 5.03
359 367 1.219124 CCACCATGTACAGCTCGCT 59.781 57.895 0.33 0.00 0.00 4.93
380 388 1.664649 CACGCTTCGCCTTGAGACA 60.665 57.895 0.00 0.00 0.00 3.41
383 391 0.946221 CGCTTCGCCTTGAGACACTT 60.946 55.000 0.00 0.00 0.00 3.16
388 396 2.328099 GCCTTGAGACACTTGCGGG 61.328 63.158 0.00 0.00 0.00 6.13
404 412 4.423209 GGCCTCCCAGTCCTCCCT 62.423 72.222 0.00 0.00 0.00 4.20
411 419 0.041833 CCCAGTCCTCCCTTCTCTCA 59.958 60.000 0.00 0.00 0.00 3.27
415 423 2.168106 CAGTCCTCCCTTCTCTCACATG 59.832 54.545 0.00 0.00 0.00 3.21
451 459 2.036098 CCACCAGCTCCAATGGCA 59.964 61.111 0.00 0.00 41.87 4.92
455 463 1.980232 CCAGCTCCAATGGCAGCAA 60.980 57.895 20.21 0.00 38.18 3.91
481 489 2.985896 CGAAGGGAAAGTTATGGCAGA 58.014 47.619 0.00 0.00 0.00 4.26
482 490 2.678336 CGAAGGGAAAGTTATGGCAGAC 59.322 50.000 0.00 0.00 0.00 3.51
483 491 3.686016 GAAGGGAAAGTTATGGCAGACA 58.314 45.455 6.57 0.00 0.00 3.41
557 565 1.001641 CCAAGTGGAAGGAGCCCAG 60.002 63.158 0.00 0.00 37.39 4.45
572 580 1.078143 CCAGCCAGTAGGTCTTGCC 60.078 63.158 0.00 0.00 35.71 4.52
574 582 1.913762 AGCCAGTAGGTCTTGCCGT 60.914 57.895 0.00 0.00 43.70 5.68
578 586 1.542547 CCAGTAGGTCTTGCCGTTGTT 60.543 52.381 0.00 0.00 43.70 2.83
584 592 1.527380 TCTTGCCGTTGTTGGGGTC 60.527 57.895 0.00 0.00 0.00 4.46
589 598 1.165284 GCCGTTGTTGGGGTCGTAAA 61.165 55.000 0.00 0.00 0.00 2.01
593 602 2.548904 CGTTGTTGGGGTCGTAAATTCA 59.451 45.455 0.00 0.00 0.00 2.57
620 629 2.480610 CGCCCCGCACTTGCATTAT 61.481 57.895 1.48 0.00 42.21 1.28
622 631 1.383456 GCCCCGCACTTGCATTATCA 61.383 55.000 1.48 0.00 42.21 2.15
623 632 1.321474 CCCCGCACTTGCATTATCAT 58.679 50.000 1.48 0.00 42.21 2.45
626 635 2.096268 CCCGCACTTGCATTATCATACG 60.096 50.000 1.48 0.00 42.21 3.06
650 659 2.697431 TGTATTTCGGCAACAACAGC 57.303 45.000 0.00 0.00 0.00 4.40
651 660 1.950216 TGTATTTCGGCAACAACAGCA 59.050 42.857 0.00 0.00 0.00 4.41
654 663 1.661498 TTTCGGCAACAACAGCAGCA 61.661 50.000 0.00 0.00 0.00 4.41
655 664 1.661498 TTCGGCAACAACAGCAGCAA 61.661 50.000 0.00 0.00 0.00 3.91
673 682 2.362632 CGGGAGGTCGAGGAAGGT 60.363 66.667 0.00 0.00 0.00 3.50
675 684 1.609794 GGGAGGTCGAGGAAGGTGT 60.610 63.158 0.00 0.00 0.00 4.16
681 690 2.197605 TCGAGGAAGGTGTGTGCGA 61.198 57.895 0.00 0.00 0.00 5.10
706 718 4.779733 GTGGGAGGAGGAGGCGGA 62.780 72.222 0.00 0.00 0.00 5.54
707 719 4.465446 TGGGAGGAGGAGGCGGAG 62.465 72.222 0.00 0.00 0.00 4.63
748 760 3.950794 GAGCGTTGCGGATGGGTGA 62.951 63.158 0.00 0.00 0.00 4.02
751 763 2.800736 GTTGCGGATGGGTGATGC 59.199 61.111 0.00 0.00 0.00 3.91
756 768 2.911143 GGATGGGTGATGCGGAGT 59.089 61.111 0.00 0.00 0.00 3.85
757 769 1.524621 GGATGGGTGATGCGGAGTG 60.525 63.158 0.00 0.00 0.00 3.51
787 799 4.776322 TCCAGCCATTGTCGCCGG 62.776 66.667 0.00 0.00 0.00 6.13
812 824 2.109181 GAGGCGGAGTGGGCATAC 59.891 66.667 0.00 0.00 34.40 2.39
813 825 3.792053 GAGGCGGAGTGGGCATACG 62.792 68.421 0.00 0.00 34.40 3.06
814 826 4.157120 GGCGGAGTGGGCATACGT 62.157 66.667 0.00 0.00 0.00 3.57
815 827 2.890474 GCGGAGTGGGCATACGTG 60.890 66.667 0.00 0.00 0.00 4.49
833 845 3.803082 CGGCGGCAGTGTGGATTG 61.803 66.667 10.53 0.00 0.00 2.67
834 846 3.443045 GGCGGCAGTGTGGATTGG 61.443 66.667 3.07 0.00 0.00 3.16
835 847 3.443045 GCGGCAGTGTGGATTGGG 61.443 66.667 0.00 0.00 0.00 4.12
836 848 3.443045 CGGCAGTGTGGATTGGGC 61.443 66.667 0.00 0.00 0.00 5.36
837 849 3.443045 GGCAGTGTGGATTGGGCG 61.443 66.667 0.00 0.00 0.00 6.13
838 850 3.443045 GCAGTGTGGATTGGGCGG 61.443 66.667 0.00 0.00 0.00 6.13
839 851 3.443045 CAGTGTGGATTGGGCGGC 61.443 66.667 0.00 0.00 0.00 6.53
860 872 2.890474 GGCGATGGTAGGCGTGTG 60.890 66.667 0.00 0.00 0.00 3.82
862 874 1.878522 GCGATGGTAGGCGTGTGAG 60.879 63.158 0.00 0.00 0.00 3.51
863 875 1.226974 CGATGGTAGGCGTGTGAGG 60.227 63.158 0.00 0.00 0.00 3.86
867 879 0.981183 TGGTAGGCGTGTGAGGAAAT 59.019 50.000 0.00 0.00 0.00 2.17
874 886 4.142038 AGGCGTGTGAGGAAATTTTACTT 58.858 39.130 0.00 0.00 0.00 2.24
877 889 4.261447 GCGTGTGAGGAAATTTTACTTGGT 60.261 41.667 0.00 0.00 0.00 3.67
880 892 4.038642 TGTGAGGAAATTTTACTTGGTGGC 59.961 41.667 0.00 0.00 0.00 5.01
881 893 4.280929 GTGAGGAAATTTTACTTGGTGGCT 59.719 41.667 0.00 0.00 0.00 4.75
882 894 4.898861 TGAGGAAATTTTACTTGGTGGCTT 59.101 37.500 0.00 0.00 0.00 4.35
897 909 4.081087 TGGTGGCTTAGAGGTTGAGTATTC 60.081 45.833 0.00 0.00 0.00 1.75
898 910 4.443621 GTGGCTTAGAGGTTGAGTATTCC 58.556 47.826 0.00 0.00 0.00 3.01
899 911 3.454812 TGGCTTAGAGGTTGAGTATTCCC 59.545 47.826 0.00 0.00 0.00 3.97
900 912 3.181453 GGCTTAGAGGTTGAGTATTCCCC 60.181 52.174 0.00 0.00 0.00 4.81
918 930 2.892784 CCCCCTCACTAATTCTCGAC 57.107 55.000 0.00 0.00 0.00 4.20
919 931 1.413077 CCCCCTCACTAATTCTCGACC 59.587 57.143 0.00 0.00 0.00 4.79
920 932 1.413077 CCCCTCACTAATTCTCGACCC 59.587 57.143 0.00 0.00 0.00 4.46
921 933 1.413077 CCCTCACTAATTCTCGACCCC 59.587 57.143 0.00 0.00 0.00 4.95
922 934 1.413077 CCTCACTAATTCTCGACCCCC 59.587 57.143 0.00 0.00 0.00 5.40
936 948 4.986467 CCCCCTGATTTTCGGAGG 57.014 61.111 0.00 0.00 0.00 4.30
937 949 1.227383 CCCCCTGATTTTCGGAGGG 59.773 63.158 0.00 0.00 45.57 4.30
938 950 4.986467 CCCTGATTTTCGGAGGGG 57.014 61.111 0.00 0.00 42.65 4.79
939 951 1.227383 CCCTGATTTTCGGAGGGGG 59.773 63.158 0.00 0.00 42.65 5.40
962 974 3.804329 GGCGTCCCCTAATGCCCA 61.804 66.667 0.00 0.00 44.20 5.36
963 975 2.274104 GCGTCCCCTAATGCCCAA 59.726 61.111 0.00 0.00 0.00 4.12
964 976 1.152756 GCGTCCCCTAATGCCCAAT 60.153 57.895 0.00 0.00 0.00 3.16
965 977 0.109723 GCGTCCCCTAATGCCCAATA 59.890 55.000 0.00 0.00 0.00 1.90
966 978 1.271926 GCGTCCCCTAATGCCCAATAT 60.272 52.381 0.00 0.00 0.00 1.28
967 979 2.026636 GCGTCCCCTAATGCCCAATATA 60.027 50.000 0.00 0.00 0.00 0.86
968 980 3.560453 GCGTCCCCTAATGCCCAATATAA 60.560 47.826 0.00 0.00 0.00 0.98
969 981 4.007659 CGTCCCCTAATGCCCAATATAAC 58.992 47.826 0.00 0.00 0.00 1.89
970 982 4.007659 GTCCCCTAATGCCCAATATAACG 58.992 47.826 0.00 0.00 0.00 3.18
971 983 3.911260 TCCCCTAATGCCCAATATAACGA 59.089 43.478 0.00 0.00 0.00 3.85
972 984 4.351407 TCCCCTAATGCCCAATATAACGAA 59.649 41.667 0.00 0.00 0.00 3.85
973 985 5.074115 CCCCTAATGCCCAATATAACGAAA 58.926 41.667 0.00 0.00 0.00 3.46
974 986 5.048294 CCCCTAATGCCCAATATAACGAAAC 60.048 44.000 0.00 0.00 0.00 2.78
975 987 5.048294 CCCTAATGCCCAATATAACGAAACC 60.048 44.000 0.00 0.00 0.00 3.27
976 988 4.929819 AATGCCCAATATAACGAAACCC 57.070 40.909 0.00 0.00 0.00 4.11
977 989 3.367646 TGCCCAATATAACGAAACCCA 57.632 42.857 0.00 0.00 0.00 4.51
978 990 3.018149 TGCCCAATATAACGAAACCCAC 58.982 45.455 0.00 0.00 0.00 4.61
979 991 2.359848 GCCCAATATAACGAAACCCACC 59.640 50.000 0.00 0.00 0.00 4.61
980 992 3.893521 CCCAATATAACGAAACCCACCT 58.106 45.455 0.00 0.00 0.00 4.00
981 993 3.881089 CCCAATATAACGAAACCCACCTC 59.119 47.826 0.00 0.00 0.00 3.85
982 994 4.519213 CCAATATAACGAAACCCACCTCA 58.481 43.478 0.00 0.00 0.00 3.86
983 995 4.574828 CCAATATAACGAAACCCACCTCAG 59.425 45.833 0.00 0.00 0.00 3.35
984 996 2.109425 ATAACGAAACCCACCTCAGC 57.891 50.000 0.00 0.00 0.00 4.26
985 997 0.035739 TAACGAAACCCACCTCAGCC 59.964 55.000 0.00 0.00 0.00 4.85
986 998 1.705997 AACGAAACCCACCTCAGCCT 61.706 55.000 0.00 0.00 0.00 4.58
987 999 0.834687 ACGAAACCCACCTCAGCCTA 60.835 55.000 0.00 0.00 0.00 3.93
988 1000 0.108138 CGAAACCCACCTCAGCCTAG 60.108 60.000 0.00 0.00 0.00 3.02
989 1001 0.393132 GAAACCCACCTCAGCCTAGC 60.393 60.000 0.00 0.00 0.00 3.42
990 1002 1.853250 AAACCCACCTCAGCCTAGCC 61.853 60.000 0.00 0.00 0.00 3.93
991 1003 3.483869 CCCACCTCAGCCTAGCCC 61.484 72.222 0.00 0.00 0.00 5.19
992 1004 2.366167 CCACCTCAGCCTAGCCCT 60.366 66.667 0.00 0.00 0.00 5.19
993 1005 2.739996 CCACCTCAGCCTAGCCCTG 61.740 68.421 3.04 3.04 0.00 4.45
994 1006 1.992277 CACCTCAGCCTAGCCCTGT 60.992 63.158 8.06 0.00 0.00 4.00
995 1007 0.687757 CACCTCAGCCTAGCCCTGTA 60.688 60.000 8.06 0.00 0.00 2.74
996 1008 0.042731 ACCTCAGCCTAGCCCTGTAA 59.957 55.000 8.06 0.00 0.00 2.41
997 1009 1.204146 CCTCAGCCTAGCCCTGTAAA 58.796 55.000 8.06 0.00 0.00 2.01
998 1010 1.559682 CCTCAGCCTAGCCCTGTAAAA 59.440 52.381 8.06 0.00 0.00 1.52
999 1011 2.633488 CTCAGCCTAGCCCTGTAAAAC 58.367 52.381 8.06 0.00 0.00 2.43
1000 1012 1.066430 TCAGCCTAGCCCTGTAAAACG 60.066 52.381 8.06 0.00 0.00 3.60
1001 1013 0.392595 AGCCTAGCCCTGTAAAACGC 60.393 55.000 0.00 0.00 0.00 4.84
1002 1014 1.374343 GCCTAGCCCTGTAAAACGCC 61.374 60.000 0.00 0.00 0.00 5.68
1003 1015 0.746923 CCTAGCCCTGTAAAACGCCC 60.747 60.000 0.00 0.00 0.00 6.13
1004 1016 0.746923 CTAGCCCTGTAAAACGCCCC 60.747 60.000 0.00 0.00 0.00 5.80
1005 1017 1.202769 TAGCCCTGTAAAACGCCCCT 61.203 55.000 0.00 0.00 0.00 4.79
1006 1018 1.202769 AGCCCTGTAAAACGCCCCTA 61.203 55.000 0.00 0.00 0.00 3.53
1007 1019 0.322726 GCCCTGTAAAACGCCCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
1008 1020 1.887522 GCCCTGTAAAACGCCCCTAAA 60.888 52.381 0.00 0.00 0.00 1.85
1009 1021 2.089201 CCCTGTAAAACGCCCCTAAAG 58.911 52.381 0.00 0.00 0.00 1.85
1010 1022 2.553685 CCCTGTAAAACGCCCCTAAAGT 60.554 50.000 0.00 0.00 0.00 2.66
1011 1023 2.486592 CCTGTAAAACGCCCCTAAAGTG 59.513 50.000 0.00 0.00 0.00 3.16
1012 1024 1.881324 TGTAAAACGCCCCTAAAGTGC 59.119 47.619 0.00 0.00 0.00 4.40
1013 1025 1.200716 GTAAAACGCCCCTAAAGTGCC 59.799 52.381 0.00 0.00 0.00 5.01
1014 1026 1.183030 AAAACGCCCCTAAAGTGCCC 61.183 55.000 0.00 0.00 0.00 5.36
1015 1027 3.912745 AACGCCCCTAAAGTGCCCG 62.913 63.158 0.00 0.00 0.00 6.13
1016 1028 4.404098 CGCCCCTAAAGTGCCCGT 62.404 66.667 0.00 0.00 0.00 5.28
1017 1029 2.750237 GCCCCTAAAGTGCCCGTG 60.750 66.667 0.00 0.00 0.00 4.94
1018 1030 2.754375 CCCCTAAAGTGCCCGTGT 59.246 61.111 0.00 0.00 0.00 4.49
1019 1031 1.984817 CCCCTAAAGTGCCCGTGTA 59.015 57.895 0.00 0.00 0.00 2.90
1020 1032 0.544697 CCCCTAAAGTGCCCGTGTAT 59.455 55.000 0.00 0.00 0.00 2.29
1021 1033 1.663695 CCCTAAAGTGCCCGTGTATG 58.336 55.000 0.00 0.00 0.00 2.39
1022 1034 1.065709 CCCTAAAGTGCCCGTGTATGT 60.066 52.381 0.00 0.00 0.00 2.29
1023 1035 2.168936 CCCTAAAGTGCCCGTGTATGTA 59.831 50.000 0.00 0.00 0.00 2.29
1024 1036 3.454375 CCTAAAGTGCCCGTGTATGTAG 58.546 50.000 0.00 0.00 0.00 2.74
1025 1037 1.734163 AAAGTGCCCGTGTATGTAGC 58.266 50.000 0.00 0.00 0.00 3.58
1026 1038 0.611200 AAGTGCCCGTGTATGTAGCA 59.389 50.000 0.00 0.00 0.00 3.49
1027 1039 0.830648 AGTGCCCGTGTATGTAGCAT 59.169 50.000 0.00 0.00 35.62 3.79
1028 1040 1.209504 AGTGCCCGTGTATGTAGCATT 59.790 47.619 0.00 0.00 35.62 3.56
1029 1041 1.330521 GTGCCCGTGTATGTAGCATTG 59.669 52.381 0.00 0.00 35.62 2.82
1030 1042 0.307760 GCCCGTGTATGTAGCATTGC 59.692 55.000 0.00 0.00 0.00 3.56
1031 1043 1.953559 CCCGTGTATGTAGCATTGCT 58.046 50.000 16.63 16.63 43.41 3.91
1032 1044 1.867233 CCCGTGTATGTAGCATTGCTC 59.133 52.381 15.81 7.72 40.44 4.26
1036 1048 4.035558 CCGTGTATGTAGCATTGCTCAATT 59.964 41.667 15.81 1.67 40.44 2.32
1051 1063 8.892723 CATTGCTCAATTTATACTCACCTAACA 58.107 33.333 0.00 0.00 0.00 2.41
1089 1104 4.583907 GCTAGTTCCGGTTTAGAGGAGTAT 59.416 45.833 0.00 0.00 37.88 2.12
1090 1105 5.767168 GCTAGTTCCGGTTTAGAGGAGTATA 59.233 44.000 0.00 0.00 37.88 1.47
1101 1116 8.824781 GGTTTAGAGGAGTATAAACCGAATTTC 58.175 37.037 10.21 0.00 45.81 2.17
1108 1123 7.919621 AGGAGTATAAACCGAATTTCTTACTCG 59.080 37.037 17.40 0.00 41.56 4.18
1116 1131 5.990996 ACCGAATTTCTTACTCGTGGTTTTA 59.009 36.000 0.00 0.00 0.00 1.52
1141 1157 3.952931 ACCGACTAGAGTTGCTCTTAGA 58.047 45.455 3.87 0.00 41.50 2.10
1161 1177 0.716108 GACGATCCGTTGCTTCAGTG 59.284 55.000 0.00 0.00 41.37 3.66
1175 1191 1.301716 CAGTGTCCCAACCTGACCG 60.302 63.158 0.00 0.00 31.60 4.79
1199 1216 3.189285 CCATCGATGGCAATGTTTTTCC 58.811 45.455 30.53 0.00 41.75 3.13
1202 1219 1.994779 CGATGGCAATGTTTTTCCTGC 59.005 47.619 0.00 0.00 0.00 4.85
1216 1233 2.191513 CCTGCGAAGGCCCATCATG 61.192 63.158 0.00 0.00 38.85 3.07
1271 2982 4.034048 CAGCTTACGTAATTAGCAACCTGG 59.966 45.833 17.55 0.00 37.37 4.45
1286 2997 2.203669 TGGGAGGGGAACGAACGA 60.204 61.111 0.14 0.00 0.00 3.85
1371 3086 2.580815 CTGAGGACCGCATCAGCA 59.419 61.111 0.00 0.00 44.70 4.41
1379 3094 4.100084 CGCATCAGCACCCTCCCA 62.100 66.667 0.00 0.00 42.27 4.37
1512 3233 1.428219 GAGATCGTCTTCCGCGACA 59.572 57.895 8.23 0.00 41.33 4.35
1793 3583 3.135895 TCAACTTTTTCCTCTTCCTCCGT 59.864 43.478 0.00 0.00 0.00 4.69
1796 3586 2.833631 TTTTCCTCTTCCTCCGTGTC 57.166 50.000 0.00 0.00 0.00 3.67
1871 3674 0.468214 CAGATCTCGACCCCTGGCTA 60.468 60.000 0.00 0.00 0.00 3.93
1918 3742 1.208614 GGCTGCGCAGAGTTTTCAG 59.791 57.895 40.21 12.59 0.00 3.02
1939 3775 3.474570 GGGCGAGCTGAGGGTCAT 61.475 66.667 0.00 0.00 39.68 3.06
2048 3893 3.652869 TGACCATGTCCTTTTTCTCCTCT 59.347 43.478 0.00 0.00 0.00 3.69
2310 4234 2.859165 ATTGCTTTTCCAGACCTCGA 57.141 45.000 0.00 0.00 0.00 4.04
2321 4248 3.958798 TCCAGACCTCGAGTATTTTAGGG 59.041 47.826 12.31 2.13 33.16 3.53
2343 4270 0.236711 CGAAGAGCACACCTTTGCAG 59.763 55.000 0.00 0.00 45.62 4.41
2506 9371 4.260702 CGTCCTAGAGAGATCAACGGTAAC 60.261 50.000 0.00 0.00 0.00 2.50
2509 9374 4.024725 CCTAGAGAGATCAACGGTAACTCG 60.025 50.000 0.00 0.00 33.53 4.18
2635 9536 3.034635 GAGCCTTGGAACTGGAGATCTA 58.965 50.000 0.00 0.00 0.00 1.98
2685 9586 2.076863 GTGGAGATCAACGGGTTTCAG 58.923 52.381 0.00 0.00 0.00 3.02
2691 9592 3.716872 AGATCAACGGGTTTCAGGGATAT 59.283 43.478 0.00 0.00 0.00 1.63
2795 9696 4.504858 ACCTCACCAAGTAACGATGAATC 58.495 43.478 0.00 0.00 0.00 2.52
2933 9834 7.545965 AGTCATAGAGTTTAGTTGTGCATGTAC 59.454 37.037 7.03 7.03 0.00 2.90
2934 9835 7.330946 GTCATAGAGTTTAGTTGTGCATGTACA 59.669 37.037 13.02 13.02 0.00 2.90
2935 9836 8.040727 TCATAGAGTTTAGTTGTGCATGTACAT 58.959 33.333 17.69 1.41 0.00 2.29
2936 9837 6.486253 AGAGTTTAGTTGTGCATGTACATG 57.514 37.500 28.07 28.07 41.60 3.21
2937 9838 5.997746 AGAGTTTAGTTGTGCATGTACATGT 59.002 36.000 31.10 16.40 40.80 3.21
2938 9839 7.158697 AGAGTTTAGTTGTGCATGTACATGTA 58.841 34.615 31.10 26.40 40.80 2.29
2987 9889 5.008613 TGCTATATTCCCGATTTTTGTGCTC 59.991 40.000 0.00 0.00 0.00 4.26
2996 9898 3.426695 CGATTTTTGTGCTCATCCCTCAC 60.427 47.826 0.00 0.00 0.00 3.51
2998 9900 2.885135 TTTGTGCTCATCCCTCACAT 57.115 45.000 0.00 0.00 40.00 3.21
3007 9909 3.634504 TCATCCCTCACATTTTCATGGG 58.365 45.455 0.00 0.00 34.72 4.00
3039 9941 5.042979 ACCAAATGGGGGAGTGGATAATAAA 60.043 40.000 4.17 0.00 42.91 1.40
3041 9943 3.849563 TGGGGGAGTGGATAATAAACG 57.150 47.619 0.00 0.00 0.00 3.60
3080 9982 9.566432 TTTACGTGGTTTTCCTTACCTAATTTA 57.434 29.630 0.00 0.00 41.38 1.40
3082 9984 6.430925 ACGTGGTTTTCCTTACCTAATTTACC 59.569 38.462 0.00 0.00 41.38 2.85
3124 10026 2.025155 TCTGCTGAGATCGTACCCTTC 58.975 52.381 0.00 0.00 0.00 3.46
3137 10039 2.435372 ACCCTTCTGTTTTGCAGTGA 57.565 45.000 0.00 0.00 45.23 3.41
3141 10043 5.079643 ACCCTTCTGTTTTGCAGTGATATT 58.920 37.500 0.00 0.00 45.23 1.28
3143 10045 5.327091 CCTTCTGTTTTGCAGTGATATTCG 58.673 41.667 0.00 0.00 45.23 3.34
3162 10064 4.877378 TCGAGTTTCTAGGTTAGCCAAA 57.123 40.909 0.00 0.00 37.19 3.28
3169 10071 4.281898 TCTAGGTTAGCCAAAGTTGTCC 57.718 45.455 0.00 0.00 37.19 4.02
3232 10134 8.798859 ATTAGTTCAGTTAAACTCTGCATCAT 57.201 30.769 0.00 0.00 40.01 2.45
3370 10273 5.105310 ACATTTTCTAGTAGCGATGGTGACT 60.105 40.000 10.17 0.00 0.00 3.41
3375 10278 0.818296 GTAGCGATGGTGACTGGAGT 59.182 55.000 0.00 0.00 0.00 3.85
3376 10279 2.022195 GTAGCGATGGTGACTGGAGTA 58.978 52.381 0.00 0.00 0.00 2.59
3418 10337 2.095059 GGTTAATGCACAACAGCCAGAG 60.095 50.000 13.40 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.059484 AGTTTTGAGGTTCGGTTAGAAATGA 58.941 36.000 0.00 0.00 41.10 2.57
1 2 6.313744 AGTTTTGAGGTTCGGTTAGAAATG 57.686 37.500 0.00 0.00 41.10 2.32
3 4 7.465781 CGTTAAGTTTTGAGGTTCGGTTAGAAA 60.466 37.037 0.00 0.00 41.10 2.52
5 6 5.463061 CGTTAAGTTTTGAGGTTCGGTTAGA 59.537 40.000 0.00 0.00 0.00 2.10
6 7 5.234972 ACGTTAAGTTTTGAGGTTCGGTTAG 59.765 40.000 0.00 0.00 0.00 2.34
7 8 5.115480 ACGTTAAGTTTTGAGGTTCGGTTA 58.885 37.500 0.00 0.00 0.00 2.85
8 9 3.940852 ACGTTAAGTTTTGAGGTTCGGTT 59.059 39.130 0.00 0.00 0.00 4.44
9 10 3.534554 ACGTTAAGTTTTGAGGTTCGGT 58.465 40.909 0.00 0.00 0.00 4.69
10 11 5.851047 ATACGTTAAGTTTTGAGGTTCGG 57.149 39.130 0.00 0.00 0.00 4.30
11 12 9.649024 TTTTAATACGTTAAGTTTTGAGGTTCG 57.351 29.630 0.00 0.00 31.81 3.95
37 38 9.991388 CATTTTGTTCATGTGTCTTTCATTTTT 57.009 25.926 0.00 0.00 0.00 1.94
38 39 9.381033 TCATTTTGTTCATGTGTCTTTCATTTT 57.619 25.926 0.00 0.00 0.00 1.82
39 40 8.945481 TCATTTTGTTCATGTGTCTTTCATTT 57.055 26.923 0.00 0.00 0.00 2.32
40 41 8.945481 TTCATTTTGTTCATGTGTCTTTCATT 57.055 26.923 0.00 0.00 0.00 2.57
41 42 8.945481 TTTCATTTTGTTCATGTGTCTTTCAT 57.055 26.923 0.00 0.00 0.00 2.57
42 43 8.249638 TCTTTCATTTTGTTCATGTGTCTTTCA 58.750 29.630 0.00 0.00 0.00 2.69
43 44 8.534778 GTCTTTCATTTTGTTCATGTGTCTTTC 58.465 33.333 0.00 0.00 0.00 2.62
44 45 8.034215 TGTCTTTCATTTTGTTCATGTGTCTTT 58.966 29.630 0.00 0.00 0.00 2.52
45 46 7.489113 GTGTCTTTCATTTTGTTCATGTGTCTT 59.511 33.333 0.00 0.00 0.00 3.01
46 47 6.974622 GTGTCTTTCATTTTGTTCATGTGTCT 59.025 34.615 0.00 0.00 0.00 3.41
47 48 6.751425 TGTGTCTTTCATTTTGTTCATGTGTC 59.249 34.615 0.00 0.00 0.00 3.67
48 49 6.629128 TGTGTCTTTCATTTTGTTCATGTGT 58.371 32.000 0.00 0.00 0.00 3.72
49 50 7.435784 TCATGTGTCTTTCATTTTGTTCATGTG 59.564 33.333 0.00 0.00 33.27 3.21
50 51 7.490840 TCATGTGTCTTTCATTTTGTTCATGT 58.509 30.769 0.00 0.00 33.27 3.21
51 52 7.933728 TCATGTGTCTTTCATTTTGTTCATG 57.066 32.000 0.00 0.00 0.00 3.07
52 53 7.980662 TGTTCATGTGTCTTTCATTTTGTTCAT 59.019 29.630 0.00 0.00 0.00 2.57
53 54 7.275341 GTGTTCATGTGTCTTTCATTTTGTTCA 59.725 33.333 0.00 0.00 0.00 3.18
54 55 7.275341 TGTGTTCATGTGTCTTTCATTTTGTTC 59.725 33.333 0.00 0.00 0.00 3.18
55 56 7.095910 TGTGTTCATGTGTCTTTCATTTTGTT 58.904 30.769 0.00 0.00 0.00 2.83
56 57 6.629128 TGTGTTCATGTGTCTTTCATTTTGT 58.371 32.000 0.00 0.00 0.00 2.83
57 58 7.522901 TTGTGTTCATGTGTCTTTCATTTTG 57.477 32.000 0.00 0.00 0.00 2.44
58 59 8.545229 TTTTGTGTTCATGTGTCTTTCATTTT 57.455 26.923 0.00 0.00 0.00 1.82
59 60 8.721019 ATTTTGTGTTCATGTGTCTTTCATTT 57.279 26.923 0.00 0.00 0.00 2.32
60 61 7.167968 CGATTTTGTGTTCATGTGTCTTTCATT 59.832 33.333 0.00 0.00 0.00 2.57
61 62 6.638063 CGATTTTGTGTTCATGTGTCTTTCAT 59.362 34.615 0.00 0.00 0.00 2.57
62 63 5.970612 CGATTTTGTGTTCATGTGTCTTTCA 59.029 36.000 0.00 0.00 0.00 2.69
131 136 9.994432 AGTTCGAATTTCTAGCATAAATTTGAG 57.006 29.630 0.00 0.00 42.98 3.02
141 146 8.910944 ACTAGGTTATAGTTCGAATTTCTAGCA 58.089 33.333 0.00 0.00 0.00 3.49
144 149 8.562892 CGGACTAGGTTATAGTTCGAATTTCTA 58.437 37.037 9.60 0.00 46.48 2.10
163 168 3.056465 AGCTTTTGGAAGAGTCGGACTAG 60.056 47.826 11.27 3.36 34.71 2.57
169 174 2.464157 AGGAGCTTTTGGAAGAGTCG 57.536 50.000 0.00 0.00 34.71 4.18
177 182 1.539157 GGAGTGGAAGGAGCTTTTGG 58.461 55.000 0.00 0.00 0.00 3.28
179 184 1.450360 AGGGAGTGGAAGGAGCTTTT 58.550 50.000 0.00 0.00 0.00 2.27
180 185 1.352687 GAAGGGAGTGGAAGGAGCTTT 59.647 52.381 0.00 0.00 0.00 3.51
181 186 0.988063 GAAGGGAGTGGAAGGAGCTT 59.012 55.000 0.00 0.00 0.00 3.74
196 201 2.680913 CGCCGGTTTGAGCAGAAGG 61.681 63.158 1.90 0.00 0.00 3.46
202 207 0.248215 CAATGATCGCCGGTTTGAGC 60.248 55.000 1.90 2.22 0.00 4.26
209 214 1.889105 CTGACCCAATGATCGCCGG 60.889 63.158 0.00 0.00 0.00 6.13
212 217 0.815615 GACCCTGACCCAATGATCGC 60.816 60.000 0.00 0.00 0.00 4.58
226 231 3.069318 GAAGGAGGCGACGACCCT 61.069 66.667 0.00 0.02 34.77 4.34
254 259 1.927174 GAAGACCAATGTCATCGACCG 59.073 52.381 0.00 0.00 44.33 4.79
258 263 2.196749 CGAGGAAGACCAATGTCATCG 58.803 52.381 0.00 0.00 44.33 3.84
263 268 1.079127 CGGCGAGGAAGACCAATGT 60.079 57.895 0.00 0.00 38.94 2.71
290 295 3.442996 GCGGATTGCAGACTGTACT 57.557 52.632 3.99 0.00 45.45 2.73
318 324 2.438434 CGCCAAAGCTACCTGGGG 60.438 66.667 10.77 10.77 39.04 4.96
321 327 1.745489 GGTCCGCCAAAGCTACCTG 60.745 63.158 0.00 0.00 38.82 4.00
322 328 1.918800 AGGTCCGCCAAAGCTACCT 60.919 57.895 0.00 0.00 44.10 3.08
338 346 0.179100 CGAGCTGTACATGGTGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
343 351 1.219124 CCAGCGAGCTGTACATGGT 59.781 57.895 21.73 0.00 42.15 3.55
368 376 1.664649 CGCAAGTGTCTCAAGGCGA 60.665 57.895 0.00 0.00 46.65 5.54
374 382 3.240134 GAGGCCCGCAAGTGTCTCA 62.240 63.158 0.00 0.00 0.00 3.27
388 396 2.285743 AAGGGAGGACTGGGAGGC 60.286 66.667 0.00 0.00 0.00 4.70
451 459 2.697147 TTTCCCTTCGGCTGCTTGCT 62.697 55.000 0.00 0.00 42.39 3.91
455 463 0.690762 TAACTTTCCCTTCGGCTGCT 59.309 50.000 0.00 0.00 0.00 4.24
489 497 4.367023 TCGGTGCACCTGTACGGC 62.367 66.667 32.28 4.83 35.61 5.68
492 500 0.032952 TCAAGTCGGTGCACCTGTAC 59.967 55.000 32.28 25.15 0.00 2.90
534 542 1.078848 CTCCTTCCACTTGGCGGAG 60.079 63.158 15.05 15.05 42.17 4.63
535 543 3.068881 CTCCTTCCACTTGGCGGA 58.931 61.111 6.12 6.12 34.71 5.54
537 545 2.747855 GGCTCCTTCCACTTGGCG 60.748 66.667 0.00 0.00 34.44 5.69
538 546 2.361737 GGGCTCCTTCCACTTGGC 60.362 66.667 0.00 0.00 34.44 4.52
540 548 1.676967 GCTGGGCTCCTTCCACTTG 60.677 63.158 0.00 0.00 0.00 3.16
542 550 3.334054 GGCTGGGCTCCTTCCACT 61.334 66.667 0.00 0.00 0.00 4.00
543 551 3.635268 CTGGCTGGGCTCCTTCCAC 62.635 68.421 0.00 0.00 0.00 4.02
544 552 2.763988 TACTGGCTGGGCTCCTTCCA 62.764 60.000 0.00 0.00 0.00 3.53
557 565 1.003718 AACGGCAAGACCTACTGGC 60.004 57.895 0.00 0.00 44.34 4.85
572 580 2.548904 TGAATTTACGACCCCAACAACG 59.451 45.455 0.00 0.00 0.00 4.10
574 582 2.554893 GCTGAATTTACGACCCCAACAA 59.445 45.455 0.00 0.00 0.00 2.83
578 586 0.609151 TCGCTGAATTTACGACCCCA 59.391 50.000 0.00 0.00 0.00 4.96
584 592 0.368907 CGTGGGTCGCTGAATTTACG 59.631 55.000 0.00 0.00 0.00 3.18
604 613 1.321474 ATGATAATGCAAGTGCGGGG 58.679 50.000 0.00 0.00 45.83 5.73
608 617 2.662791 CGGCGTATGATAATGCAAGTGC 60.663 50.000 0.00 0.00 42.50 4.40
616 625 6.569228 CGAAATACATCGGCGTATGATAAT 57.431 37.500 20.62 11.05 39.12 1.28
643 652 1.893808 CTCCCGTTGCTGCTGTTGT 60.894 57.895 0.00 0.00 0.00 3.32
650 659 2.125912 CTCGACCTCCCGTTGCTG 60.126 66.667 0.00 0.00 0.00 4.41
651 660 3.382832 CCTCGACCTCCCGTTGCT 61.383 66.667 0.00 0.00 0.00 3.91
654 663 1.982938 CCTTCCTCGACCTCCCGTT 60.983 63.158 0.00 0.00 0.00 4.44
655 664 2.362632 CCTTCCTCGACCTCCCGT 60.363 66.667 0.00 0.00 0.00 5.28
687 696 3.775654 CGCCTCCTCCTCCCACAC 61.776 72.222 0.00 0.00 0.00 3.82
689 698 4.779733 TCCGCCTCCTCCTCCCAC 62.780 72.222 0.00 0.00 0.00 4.61
690 699 4.465446 CTCCGCCTCCTCCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
730 742 3.499737 CACCCATCCGCAACGCTC 61.500 66.667 0.00 0.00 0.00 5.03
732 744 2.824041 ATCACCCATCCGCAACGC 60.824 61.111 0.00 0.00 0.00 4.84
733 745 3.101209 CATCACCCATCCGCAACG 58.899 61.111 0.00 0.00 0.00 4.10
734 746 2.800736 GCATCACCCATCCGCAAC 59.199 61.111 0.00 0.00 0.00 4.17
735 747 2.823593 CGCATCACCCATCCGCAA 60.824 61.111 0.00 0.00 0.00 4.85
736 748 4.854924 CCGCATCACCCATCCGCA 62.855 66.667 0.00 0.00 0.00 5.69
739 751 1.524621 CACTCCGCATCACCCATCC 60.525 63.158 0.00 0.00 0.00 3.51
741 753 2.591753 CCACTCCGCATCACCCAT 59.408 61.111 0.00 0.00 0.00 4.00
768 780 2.114670 CGGCGACAATGGCTGGATT 61.115 57.895 0.00 0.00 33.11 3.01
798 810 2.890474 CACGTATGCCCACTCCGC 60.890 66.667 0.00 0.00 0.00 5.54
816 828 3.803082 CAATCCACACTGCCGCCG 61.803 66.667 0.00 0.00 0.00 6.46
817 829 3.443045 CCAATCCACACTGCCGCC 61.443 66.667 0.00 0.00 0.00 6.13
818 830 3.443045 CCCAATCCACACTGCCGC 61.443 66.667 0.00 0.00 0.00 6.53
819 831 3.443045 GCCCAATCCACACTGCCG 61.443 66.667 0.00 0.00 0.00 5.69
820 832 3.443045 CGCCCAATCCACACTGCC 61.443 66.667 0.00 0.00 0.00 4.85
821 833 3.443045 CCGCCCAATCCACACTGC 61.443 66.667 0.00 0.00 0.00 4.40
822 834 3.443045 GCCGCCCAATCCACACTG 61.443 66.667 0.00 0.00 0.00 3.66
842 854 4.508128 ACACGCCTACCATCGCCG 62.508 66.667 0.00 0.00 0.00 6.46
843 855 2.890474 CACACGCCTACCATCGCC 60.890 66.667 0.00 0.00 0.00 5.54
844 856 1.878522 CTCACACGCCTACCATCGC 60.879 63.158 0.00 0.00 0.00 4.58
855 867 5.212194 CACCAAGTAAAATTTCCTCACACG 58.788 41.667 0.00 0.00 0.00 4.49
860 872 5.468540 AAGCCACCAAGTAAAATTTCCTC 57.531 39.130 0.00 0.00 0.00 3.71
862 874 6.350194 CCTCTAAGCCACCAAGTAAAATTTCC 60.350 42.308 0.00 0.00 0.00 3.13
863 875 6.208797 ACCTCTAAGCCACCAAGTAAAATTTC 59.791 38.462 0.00 0.00 0.00 2.17
867 879 4.717279 ACCTCTAAGCCACCAAGTAAAA 57.283 40.909 0.00 0.00 0.00 1.52
874 886 1.729586 ACTCAACCTCTAAGCCACCA 58.270 50.000 0.00 0.00 0.00 4.17
877 889 3.454812 GGGAATACTCAACCTCTAAGCCA 59.545 47.826 0.00 0.00 0.00 4.75
880 892 4.691326 GGGGGAATACTCAACCTCTAAG 57.309 50.000 0.00 0.00 0.00 2.18
899 911 1.413077 GGTCGAGAATTAGTGAGGGGG 59.587 57.143 0.00 0.00 0.00 5.40
900 912 1.413077 GGGTCGAGAATTAGTGAGGGG 59.587 57.143 0.00 0.00 0.00 4.79
902 914 1.413077 GGGGGTCGAGAATTAGTGAGG 59.587 57.143 0.00 0.00 0.00 3.86
919 931 4.986467 CCTCCGAAAATCAGGGGG 57.014 61.111 0.00 0.00 42.60 5.40
920 932 4.986467 CCCTCCGAAAATCAGGGG 57.014 61.111 0.00 0.00 43.12 4.79
921 933 1.227383 CCCCCTCCGAAAATCAGGG 59.773 63.158 0.00 0.00 46.08 4.45
922 934 4.986467 CCCCCTCCGAAAATCAGG 57.014 61.111 0.00 0.00 0.00 3.86
945 957 2.640581 ATTGGGCATTAGGGGACGCC 62.641 60.000 0.00 0.00 44.10 5.68
946 958 0.109723 TATTGGGCATTAGGGGACGC 59.890 55.000 0.00 0.00 0.00 5.19
947 959 2.879103 ATATTGGGCATTAGGGGACG 57.121 50.000 0.00 0.00 0.00 4.79
948 960 4.007659 CGTTATATTGGGCATTAGGGGAC 58.992 47.826 0.00 0.00 0.00 4.46
949 961 3.911260 TCGTTATATTGGGCATTAGGGGA 59.089 43.478 0.00 0.00 0.00 4.81
950 962 4.295141 TCGTTATATTGGGCATTAGGGG 57.705 45.455 0.00 0.00 0.00 4.79
951 963 5.048294 GGTTTCGTTATATTGGGCATTAGGG 60.048 44.000 0.00 0.00 0.00 3.53
952 964 5.048294 GGGTTTCGTTATATTGGGCATTAGG 60.048 44.000 0.00 0.00 0.00 2.69
953 965 5.533154 TGGGTTTCGTTATATTGGGCATTAG 59.467 40.000 0.00 0.00 0.00 1.73
954 966 5.299782 GTGGGTTTCGTTATATTGGGCATTA 59.700 40.000 0.00 0.00 0.00 1.90
955 967 4.098807 GTGGGTTTCGTTATATTGGGCATT 59.901 41.667 0.00 0.00 0.00 3.56
956 968 3.634910 GTGGGTTTCGTTATATTGGGCAT 59.365 43.478 0.00 0.00 0.00 4.40
957 969 3.018149 GTGGGTTTCGTTATATTGGGCA 58.982 45.455 0.00 0.00 0.00 5.36
958 970 2.359848 GGTGGGTTTCGTTATATTGGGC 59.640 50.000 0.00 0.00 0.00 5.36
959 971 3.881089 GAGGTGGGTTTCGTTATATTGGG 59.119 47.826 0.00 0.00 0.00 4.12
960 972 4.519213 TGAGGTGGGTTTCGTTATATTGG 58.481 43.478 0.00 0.00 0.00 3.16
961 973 4.035208 GCTGAGGTGGGTTTCGTTATATTG 59.965 45.833 0.00 0.00 0.00 1.90
962 974 4.196971 GCTGAGGTGGGTTTCGTTATATT 58.803 43.478 0.00 0.00 0.00 1.28
963 975 3.433173 GGCTGAGGTGGGTTTCGTTATAT 60.433 47.826 0.00 0.00 0.00 0.86
964 976 2.093341 GGCTGAGGTGGGTTTCGTTATA 60.093 50.000 0.00 0.00 0.00 0.98
965 977 1.339727 GGCTGAGGTGGGTTTCGTTAT 60.340 52.381 0.00 0.00 0.00 1.89
966 978 0.035739 GGCTGAGGTGGGTTTCGTTA 59.964 55.000 0.00 0.00 0.00 3.18
967 979 1.228154 GGCTGAGGTGGGTTTCGTT 60.228 57.895 0.00 0.00 0.00 3.85
968 980 0.834687 TAGGCTGAGGTGGGTTTCGT 60.835 55.000 0.00 0.00 0.00 3.85
969 981 0.108138 CTAGGCTGAGGTGGGTTTCG 60.108 60.000 0.00 0.00 0.00 3.46
970 982 0.393132 GCTAGGCTGAGGTGGGTTTC 60.393 60.000 0.00 0.00 0.00 2.78
971 983 1.685820 GCTAGGCTGAGGTGGGTTT 59.314 57.895 0.00 0.00 0.00 3.27
972 984 2.301738 GGCTAGGCTGAGGTGGGTT 61.302 63.158 9.46 0.00 0.00 4.11
973 985 2.689034 GGCTAGGCTGAGGTGGGT 60.689 66.667 9.46 0.00 0.00 4.51
974 986 3.483869 GGGCTAGGCTGAGGTGGG 61.484 72.222 16.80 0.00 0.00 4.61
975 987 2.366167 AGGGCTAGGCTGAGGTGG 60.366 66.667 16.80 0.00 0.00 4.61
976 988 0.687757 TACAGGGCTAGGCTGAGGTG 60.688 60.000 16.80 8.58 0.00 4.00
977 989 0.042731 TTACAGGGCTAGGCTGAGGT 59.957 55.000 16.80 11.25 0.00 3.85
978 990 1.204146 TTTACAGGGCTAGGCTGAGG 58.796 55.000 16.80 5.94 0.00 3.86
979 991 2.633488 GTTTTACAGGGCTAGGCTGAG 58.367 52.381 16.80 8.74 0.00 3.35
980 992 1.066430 CGTTTTACAGGGCTAGGCTGA 60.066 52.381 16.80 0.00 0.00 4.26
981 993 1.369625 CGTTTTACAGGGCTAGGCTG 58.630 55.000 16.80 14.07 0.00 4.85
982 994 0.392595 GCGTTTTACAGGGCTAGGCT 60.393 55.000 16.80 0.00 0.00 4.58
983 995 1.374343 GGCGTTTTACAGGGCTAGGC 61.374 60.000 8.00 8.00 33.10 3.93
984 996 0.746923 GGGCGTTTTACAGGGCTAGG 60.747 60.000 0.00 0.00 36.12 3.02
985 997 0.746923 GGGGCGTTTTACAGGGCTAG 60.747 60.000 0.00 0.00 36.12 3.42
986 998 1.202769 AGGGGCGTTTTACAGGGCTA 61.203 55.000 0.00 0.00 36.12 3.93
987 999 1.202769 TAGGGGCGTTTTACAGGGCT 61.203 55.000 0.00 0.00 36.12 5.19
988 1000 0.322726 TTAGGGGCGTTTTACAGGGC 60.323 55.000 0.00 0.00 35.10 5.19
989 1001 2.089201 CTTTAGGGGCGTTTTACAGGG 58.911 52.381 0.00 0.00 0.00 4.45
990 1002 2.486592 CACTTTAGGGGCGTTTTACAGG 59.513 50.000 0.00 0.00 0.00 4.00
991 1003 2.095415 GCACTTTAGGGGCGTTTTACAG 60.095 50.000 0.00 0.00 0.00 2.74
992 1004 1.881324 GCACTTTAGGGGCGTTTTACA 59.119 47.619 0.00 0.00 0.00 2.41
993 1005 1.200716 GGCACTTTAGGGGCGTTTTAC 59.799 52.381 0.00 0.00 0.00 2.01
994 1006 1.536940 GGCACTTTAGGGGCGTTTTA 58.463 50.000 0.00 0.00 0.00 1.52
995 1007 1.183030 GGGCACTTTAGGGGCGTTTT 61.183 55.000 0.00 0.00 0.00 2.43
996 1008 1.605451 GGGCACTTTAGGGGCGTTT 60.605 57.895 0.00 0.00 0.00 3.60
997 1009 2.035155 GGGCACTTTAGGGGCGTT 59.965 61.111 0.00 0.00 0.00 4.84
998 1010 4.404098 CGGGCACTTTAGGGGCGT 62.404 66.667 0.00 0.00 0.00 5.68
999 1011 4.404098 ACGGGCACTTTAGGGGCG 62.404 66.667 0.00 0.00 0.00 6.13
1000 1012 2.187896 TACACGGGCACTTTAGGGGC 62.188 60.000 0.00 0.00 0.00 5.80
1001 1013 0.544697 ATACACGGGCACTTTAGGGG 59.455 55.000 0.00 0.00 0.00 4.79
1002 1014 1.065709 ACATACACGGGCACTTTAGGG 60.066 52.381 0.00 0.00 0.00 3.53
1003 1015 2.396590 ACATACACGGGCACTTTAGG 57.603 50.000 0.00 0.00 0.00 2.69
1004 1016 2.864343 GCTACATACACGGGCACTTTAG 59.136 50.000 0.00 0.00 0.00 1.85
1005 1017 2.234168 TGCTACATACACGGGCACTTTA 59.766 45.455 0.00 0.00 0.00 1.85
1006 1018 1.002659 TGCTACATACACGGGCACTTT 59.997 47.619 0.00 0.00 0.00 2.66
1007 1019 0.611200 TGCTACATACACGGGCACTT 59.389 50.000 0.00 0.00 0.00 3.16
1008 1020 0.830648 ATGCTACATACACGGGCACT 59.169 50.000 0.00 0.00 35.72 4.40
1009 1021 1.330521 CAATGCTACATACACGGGCAC 59.669 52.381 0.00 0.00 35.72 5.01
1010 1022 1.662517 CAATGCTACATACACGGGCA 58.337 50.000 0.00 0.00 37.32 5.36
1011 1023 0.307760 GCAATGCTACATACACGGGC 59.692 55.000 0.00 0.00 0.00 6.13
1012 1024 1.867233 GAGCAATGCTACATACACGGG 59.133 52.381 8.12 0.00 39.88 5.28
1013 1025 2.549926 TGAGCAATGCTACATACACGG 58.450 47.619 8.12 0.00 39.88 4.94
1014 1026 4.801147 ATTGAGCAATGCTACATACACG 57.199 40.909 8.12 0.00 39.88 4.49
1015 1027 9.599322 GTATAAATTGAGCAATGCTACATACAC 57.401 33.333 8.12 0.00 39.88 2.90
1016 1028 9.559732 AGTATAAATTGAGCAATGCTACATACA 57.440 29.630 8.12 0.00 39.88 2.29
1018 1030 9.777297 TGAGTATAAATTGAGCAATGCTACATA 57.223 29.630 8.12 0.00 39.88 2.29
1019 1031 8.562892 GTGAGTATAAATTGAGCAATGCTACAT 58.437 33.333 8.12 0.00 39.88 2.29
1020 1032 7.012327 GGTGAGTATAAATTGAGCAATGCTACA 59.988 37.037 8.12 5.47 39.88 2.74
1021 1033 7.227512 AGGTGAGTATAAATTGAGCAATGCTAC 59.772 37.037 8.12 0.00 39.88 3.58
1022 1034 7.282585 AGGTGAGTATAAATTGAGCAATGCTA 58.717 34.615 8.12 0.00 39.88 3.49
1023 1035 6.125029 AGGTGAGTATAAATTGAGCAATGCT 58.875 36.000 7.79 7.79 43.88 3.79
1024 1036 6.382869 AGGTGAGTATAAATTGAGCAATGC 57.617 37.500 0.00 0.00 0.00 3.56
1025 1037 8.892723 TGTTAGGTGAGTATAAATTGAGCAATG 58.107 33.333 0.00 0.00 0.00 2.82
1026 1038 9.113838 CTGTTAGGTGAGTATAAATTGAGCAAT 57.886 33.333 0.00 0.00 0.00 3.56
1027 1039 8.100791 ACTGTTAGGTGAGTATAAATTGAGCAA 58.899 33.333 0.00 0.00 0.00 3.91
1028 1040 7.620880 ACTGTTAGGTGAGTATAAATTGAGCA 58.379 34.615 0.00 0.00 0.00 4.26
1029 1041 8.494016 AACTGTTAGGTGAGTATAAATTGAGC 57.506 34.615 0.00 0.00 0.00 4.26
1036 1048 8.513658 TCCCCTATAACTGTTAGGTGAGTATAA 58.486 37.037 6.40 0.00 35.42 0.98
1051 1063 3.829728 ACTAGCCGATCCCCTATAACT 57.170 47.619 0.00 0.00 0.00 2.24
1089 1104 5.540911 ACCACGAGTAAGAAATTCGGTTTA 58.459 37.500 0.00 0.00 38.58 2.01
1090 1105 4.383173 ACCACGAGTAAGAAATTCGGTTT 58.617 39.130 0.00 0.00 38.58 3.27
1097 1112 6.429078 GGTTCCTAAAACCACGAGTAAGAAAT 59.571 38.462 2.12 0.00 40.03 2.17
1101 1116 3.676646 CGGTTCCTAAAACCACGAGTAAG 59.323 47.826 7.65 0.00 40.28 2.34
1108 1123 4.021632 ACTCTAGTCGGTTCCTAAAACCAC 60.022 45.833 7.65 5.04 40.28 4.16
1116 1131 1.819903 GAGCAACTCTAGTCGGTTCCT 59.180 52.381 0.00 0.00 0.00 3.36
1141 1157 0.603569 ACTGAAGCAACGGATCGTCT 59.396 50.000 0.00 0.00 39.99 4.18
1161 1177 1.302271 GGTTCGGTCAGGTTGGGAC 60.302 63.158 0.00 0.00 34.52 4.46
1183 1199 1.994779 CGCAGGAAAAACATTGCCATC 59.005 47.619 0.00 0.00 33.10 3.51
1199 1216 2.191513 CCATGATGGGCCTTCGCAG 61.192 63.158 14.06 6.74 38.59 5.18
1202 1219 4.147701 GACCATGATGGGCCTTCG 57.852 61.111 17.04 3.51 40.64 3.79
1271 2982 1.735559 CGTTCGTTCGTTCCCCTCC 60.736 63.158 0.00 0.00 0.00 4.30
1286 2997 2.546789 CGAAGCTCAAAAACCCTACGTT 59.453 45.455 0.00 0.00 35.70 3.99
1371 3086 2.283966 CAGGTCGTCTGGGAGGGT 60.284 66.667 1.58 0.00 39.76 4.34
1379 3094 1.379309 GAGGAGGAGCAGGTCGTCT 60.379 63.158 19.05 7.80 39.60 4.18
1512 3233 0.396695 TCGAGCGAGGGGAAGGTAAT 60.397 55.000 0.00 0.00 0.00 1.89
1629 3386 2.677979 GCGAGTTGAAACCGAGGCC 61.678 63.158 0.00 0.00 0.00 5.19
1673 3451 1.249469 GGAAGACGAACTCCTCCGGT 61.249 60.000 0.00 0.00 0.00 5.28
1871 3674 4.039092 AAGCGTGGGCAGCAGGAT 62.039 61.111 0.00 0.00 43.41 3.24
1918 3742 4.154347 CCCTCAGCTCGCCCTCAC 62.154 72.222 0.00 0.00 0.00 3.51
1963 3799 0.251916 TTGGTACAGGCGGAAGATGG 59.748 55.000 0.00 0.00 42.39 3.51
2048 3893 3.315142 GACGGAGATGCTGGCACCA 62.315 63.158 0.00 0.00 0.00 4.17
2279 4198 4.082463 TGGAAAAGCAATTTGACGGGATAC 60.082 41.667 0.00 0.00 0.00 2.24
2310 4234 3.773119 TGCTCTTCGGTCCCTAAAATACT 59.227 43.478 0.00 0.00 0.00 2.12
2321 4248 0.868406 CAAAGGTGTGCTCTTCGGTC 59.132 55.000 0.00 0.00 0.00 4.79
2343 4270 5.726980 ATCATGTGCTTCTCTATCTCCTC 57.273 43.478 0.00 0.00 0.00 3.71
2538 9427 5.163343 ACACTGGTGAACTACTACACATTGT 60.163 40.000 7.78 0.00 38.57 2.71
2635 9536 5.753721 AGAGCAGACAAGGAGATAGTTTT 57.246 39.130 0.00 0.00 0.00 2.43
2685 9586 5.511386 AATCAATCTCCTGACCATATCCC 57.489 43.478 0.00 0.00 0.00 3.85
2691 9592 5.503634 TCAAGAAATCAATCTCCTGACCA 57.496 39.130 0.00 0.00 0.00 4.02
2779 9680 2.276201 TGCGGATTCATCGTTACTTGG 58.724 47.619 0.00 0.00 0.00 3.61
2817 9718 5.289595 CACTGCATAGAAGAATACGCCTTA 58.710 41.667 0.00 0.00 0.00 2.69
2935 9836 9.841295 GTTTAGTTAGATAATGGTTGGGATACA 57.159 33.333 0.00 0.00 39.74 2.29
2936 9837 8.985805 CGTTTAGTTAGATAATGGTTGGGATAC 58.014 37.037 0.00 0.00 0.00 2.24
2937 9838 8.707449 ACGTTTAGTTAGATAATGGTTGGGATA 58.293 33.333 0.00 0.00 0.00 2.59
2938 9839 7.497909 CACGTTTAGTTAGATAATGGTTGGGAT 59.502 37.037 0.00 0.00 0.00 3.85
2987 9889 3.634504 TCCCATGAAAATGTGAGGGATG 58.365 45.455 0.00 0.00 40.26 3.51
2998 9900 8.270744 CCCATTTGGTTTATATTCCCATGAAAA 58.729 33.333 0.00 0.00 33.32 2.29
3007 9909 5.304357 CCACTCCCCCATTTGGTTTATATTC 59.696 44.000 0.00 0.00 0.00 1.75
3039 9941 8.745464 AACCACGTAAAAATATTAAATTGCGT 57.255 26.923 14.40 14.40 43.13 5.24
3108 10010 4.457834 AAACAGAAGGGTACGATCTCAG 57.542 45.455 0.00 0.00 0.00 3.35
3137 10039 6.726490 TGGCTAACCTAGAAACTCGAATAT 57.274 37.500 0.00 0.00 36.63 1.28
3141 10043 4.282703 ACTTTGGCTAACCTAGAAACTCGA 59.717 41.667 0.00 0.00 36.63 4.04
3143 10045 5.763698 ACAACTTTGGCTAACCTAGAAACTC 59.236 40.000 0.00 0.00 36.63 3.01
3162 10064 8.664079 AGGCATATAAATTCAGATAGGACAACT 58.336 33.333 0.00 0.00 0.00 3.16
3169 10071 7.177878 ACCCCAAGGCATATAAATTCAGATAG 58.822 38.462 0.00 0.00 36.11 2.08
3232 10134 6.277605 TGAAATTCAGACGAGACAACTAACA 58.722 36.000 0.00 0.00 0.00 2.41
3358 10261 1.683917 GATACTCCAGTCACCATCGCT 59.316 52.381 0.00 0.00 0.00 4.93
3370 10273 7.337938 TGCAGAAGATACAAAATGATACTCCA 58.662 34.615 0.00 0.00 0.00 3.86
3375 10278 8.579850 AACCTTGCAGAAGATACAAAATGATA 57.420 30.769 0.00 0.00 0.00 2.15
3376 10279 7.472334 AACCTTGCAGAAGATACAAAATGAT 57.528 32.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.