Multiple sequence alignment - TraesCS7B01G433300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G433300 chr7B 100.000 6623 0 0 1 6623 700812977 700819599 0.000000e+00 12231.0
1 TraesCS7B01G433300 chr7B 98.545 2130 16 3 2416 4541 306568876 306570994 0.000000e+00 3747.0
2 TraesCS7B01G433300 chr7B 98.358 2131 19 3 2416 4542 143880677 143882795 0.000000e+00 3727.0
3 TraesCS7B01G433300 chr7B 86.301 657 65 15 1600 2235 747105782 747106434 0.000000e+00 691.0
4 TraesCS7B01G433300 chr7B 87.023 393 42 3 1127 1519 725547967 725547584 1.020000e-117 435.0
5 TraesCS7B01G433300 chr7B 90.942 276 16 6 4808 5081 725531431 725531163 4.880000e-96 363.0
6 TraesCS7B01G433300 chr7B 88.845 251 21 5 2172 2419 725545876 725545630 1.080000e-77 302.0
7 TraesCS7B01G433300 chr7B 87.817 197 17 3 1300 1495 747105586 747105776 2.400000e-54 224.0
8 TraesCS7B01G433300 chr2B 98.641 2134 14 3 2416 4546 46599087 46596966 0.000000e+00 3766.0
9 TraesCS7B01G433300 chr2B 97.222 36 0 1 690 724 95954375 95954410 7.170000e-05 60.2
10 TraesCS7B01G433300 chr2B 97.222 36 0 1 690 724 95987226 95987261 7.170000e-05 60.2
11 TraesCS7B01G433300 chr2B 97.222 36 0 1 690 724 95995532 95995567 7.170000e-05 60.2
12 TraesCS7B01G433300 chr2B 97.222 36 0 1 690 724 96020822 96020857 7.170000e-05 60.2
13 TraesCS7B01G433300 chr2B 94.444 36 1 1 690 724 95962005 95962040 3.000000e-03 54.7
14 TraesCS7B01G433300 chr2B 100.000 28 0 0 697 724 615799110 615799083 1.200000e-02 52.8
15 TraesCS7B01G433300 chr5A 98.593 2132 16 3 2416 4546 174599473 174601591 0.000000e+00 3759.0
16 TraesCS7B01G433300 chr5A 85.343 539 49 22 4545 5081 685405526 685405016 1.260000e-146 531.0
17 TraesCS7B01G433300 chr5A 89.243 251 20 5 2172 2419 685405766 685405520 2.320000e-79 307.0
18 TraesCS7B01G433300 chr6B 98.280 2151 21 5 2416 4563 606301142 606303279 0.000000e+00 3753.0
19 TraesCS7B01G433300 chr3B 98.457 2139 17 3 2416 4550 386144679 386146805 0.000000e+00 3753.0
20 TraesCS7B01G433300 chr3B 82.752 545 54 25 4539 5081 28677488 28677994 3.640000e-122 449.0
21 TraesCS7B01G433300 chr3B 91.857 307 18 5 2116 2419 28677198 28677500 7.940000e-114 422.0
22 TraesCS7B01G433300 chr4B 98.501 2135 16 3 2416 4546 322672257 322670135 0.000000e+00 3751.0
23 TraesCS7B01G433300 chr4B 98.499 2132 16 3 2416 4543 90725839 90723720 0.000000e+00 3746.0
24 TraesCS7B01G433300 chr4B 98.454 2135 17 3 2416 4546 291326726 291324604 0.000000e+00 3746.0
25 TraesCS7B01G433300 chr1B 98.680 2122 13 2 2418 4536 69842730 69840621 0.000000e+00 3749.0
26 TraesCS7B01G433300 chr1B 98.273 1737 17 2 2815 4551 251078624 251080347 0.000000e+00 3029.0
27 TraesCS7B01G433300 chr1B 88.320 1250 119 15 3299 4539 254468014 254469245 0.000000e+00 1474.0
28 TraesCS7B01G433300 chr1B 86.140 671 71 7 866 1535 588075945 588075296 0.000000e+00 704.0
29 TraesCS7B01G433300 chr1B 86.140 671 71 7 866 1535 588132745 588132096 0.000000e+00 704.0
30 TraesCS7B01G433300 chr1B 92.191 461 28 7 1959 2416 588073415 588072960 0.000000e+00 645.0
31 TraesCS7B01G433300 chr1B 92.191 461 28 7 1959 2416 588130286 588129831 0.000000e+00 645.0
32 TraesCS7B01G433300 chr1B 81.053 380 48 13 1600 1963 588075322 588074951 1.410000e-71 281.0
33 TraesCS7B01G433300 chr1B 81.053 380 48 13 1600 1963 588132122 588131751 1.410000e-71 281.0
34 TraesCS7B01G433300 chr1A 98.498 2130 19 2 2416 4544 7341425 7343542 0.000000e+00 3744.0
35 TraesCS7B01G433300 chr2A 98.405 2132 21 2 2416 4546 518942093 518944212 0.000000e+00 3736.0
36 TraesCS7B01G433300 chr2A 97.483 1033 10 3 3533 4562 87863094 87864113 0.000000e+00 1749.0
37 TraesCS7B01G433300 chr2A 84.601 539 52 23 4545 5081 438230995 438230486 2.130000e-139 507.0
38 TraesCS7B01G433300 chr7A 98.313 2134 23 2 2416 4548 495453396 495455517 0.000000e+00 3729.0
39 TraesCS7B01G433300 chr7A 91.307 1553 97 19 1 1535 701491112 701492644 0.000000e+00 2085.0
40 TraesCS7B01G433300 chr7A 85.569 1767 116 66 4627 6295 701493713 701495438 0.000000e+00 1722.0
41 TraesCS7B01G433300 chr7A 90.933 750 52 7 1661 2398 701492710 701493455 0.000000e+00 994.0
42 TraesCS7B01G433300 chr7A 84.854 548 47 22 4539 5081 708800269 708800785 2.740000e-143 520.0
43 TraesCS7B01G433300 chr7A 89.474 323 28 4 6294 6615 701495477 701495794 2.880000e-108 403.0
44 TraesCS7B01G433300 chr7A 90.438 251 17 5 2172 2419 708800035 708800281 2.300000e-84 324.0
45 TraesCS7B01G433300 chrUn 98.235 1303 11 2 2416 3717 365540635 365539344 0.000000e+00 2268.0
46 TraesCS7B01G433300 chrUn 86.140 671 71 7 866 1535 265497704 265497055 0.000000e+00 704.0
47 TraesCS7B01G433300 chrUn 92.191 461 28 7 1959 2416 265495173 265494718 0.000000e+00 645.0
48 TraesCS7B01G433300 chrUn 81.053 380 48 13 1600 1963 265497081 265496710 1.410000e-71 281.0
49 TraesCS7B01G433300 chr7D 86.744 1735 130 43 4539 6190 611584869 611586586 0.000000e+00 1838.0
50 TraesCS7B01G433300 chr7D 91.536 638 26 14 1787 2421 611584271 611584883 0.000000e+00 854.0
51 TraesCS7B01G433300 chr7D 92.506 427 17 6 838 1258 611583429 611583846 1.230000e-166 597.0
52 TraesCS7B01G433300 chr7D 87.961 407 42 5 1349 1749 611583870 611584275 2.160000e-129 473.0
53 TraesCS7B01G433300 chr7D 84.375 352 50 3 1 348 611521004 611521354 2.290000e-89 340.0
54 TraesCS7B01G433300 chr7D 90.541 74 4 2 779 849 611583175 611583248 1.970000e-15 95.3
55 TraesCS7B01G433300 chr5B 98.100 1000 5 3 3547 4546 604876436 604875451 0.000000e+00 1729.0
56 TraesCS7B01G433300 chr5B 84.774 486 43 19 4539 5020 39818831 39818373 6.050000e-125 459.0
57 TraesCS7B01G433300 chr5B 89.902 307 24 5 2116 2419 39819121 39818819 8.050000e-104 388.0
58 TraesCS7B01G433300 chr5D 90.881 658 50 7 1764 2419 10216266 10215617 0.000000e+00 874.0
59 TraesCS7B01G433300 chr5D 83.131 741 67 26 865 1566 10217263 10216542 2.030000e-174 623.0
60 TraesCS7B01G433300 chr5D 83.488 539 59 20 4545 5081 10215623 10215113 6.010000e-130 475.0
61 TraesCS7B01G433300 chr2D 97.222 36 0 1 690 724 61272511 61272546 7.170000e-05 60.2
62 TraesCS7B01G433300 chr2D 97.222 36 0 1 690 724 61300299 61300334 7.170000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G433300 chr7B 700812977 700819599 6622 False 12231.000000 12231 100.000000 1 6623 1 chr7B.!!$F3 6622
1 TraesCS7B01G433300 chr7B 306568876 306570994 2118 False 3747.000000 3747 98.545000 2416 4541 1 chr7B.!!$F2 2125
2 TraesCS7B01G433300 chr7B 143880677 143882795 2118 False 3727.000000 3727 98.358000 2416 4542 1 chr7B.!!$F1 2126
3 TraesCS7B01G433300 chr7B 747105586 747106434 848 False 457.500000 691 87.059000 1300 2235 2 chr7B.!!$F4 935
4 TraesCS7B01G433300 chr7B 725545630 725547967 2337 True 368.500000 435 87.934000 1127 2419 2 chr7B.!!$R2 1292
5 TraesCS7B01G433300 chr2B 46596966 46599087 2121 True 3766.000000 3766 98.641000 2416 4546 1 chr2B.!!$R1 2130
6 TraesCS7B01G433300 chr5A 174599473 174601591 2118 False 3759.000000 3759 98.593000 2416 4546 1 chr5A.!!$F1 2130
7 TraesCS7B01G433300 chr5A 685405016 685405766 750 True 419.000000 531 87.293000 2172 5081 2 chr5A.!!$R1 2909
8 TraesCS7B01G433300 chr6B 606301142 606303279 2137 False 3753.000000 3753 98.280000 2416 4563 1 chr6B.!!$F1 2147
9 TraesCS7B01G433300 chr3B 386144679 386146805 2126 False 3753.000000 3753 98.457000 2416 4550 1 chr3B.!!$F1 2134
10 TraesCS7B01G433300 chr3B 28677198 28677994 796 False 435.500000 449 87.304500 2116 5081 2 chr3B.!!$F2 2965
11 TraesCS7B01G433300 chr4B 322670135 322672257 2122 True 3751.000000 3751 98.501000 2416 4546 1 chr4B.!!$R3 2130
12 TraesCS7B01G433300 chr4B 90723720 90725839 2119 True 3746.000000 3746 98.499000 2416 4543 1 chr4B.!!$R1 2127
13 TraesCS7B01G433300 chr4B 291324604 291326726 2122 True 3746.000000 3746 98.454000 2416 4546 1 chr4B.!!$R2 2130
14 TraesCS7B01G433300 chr1B 69840621 69842730 2109 True 3749.000000 3749 98.680000 2418 4536 1 chr1B.!!$R1 2118
15 TraesCS7B01G433300 chr1B 251078624 251080347 1723 False 3029.000000 3029 98.273000 2815 4551 1 chr1B.!!$F1 1736
16 TraesCS7B01G433300 chr1B 254468014 254469245 1231 False 1474.000000 1474 88.320000 3299 4539 1 chr1B.!!$F2 1240
17 TraesCS7B01G433300 chr1B 588072960 588075945 2985 True 543.333333 704 86.461333 866 2416 3 chr1B.!!$R2 1550
18 TraesCS7B01G433300 chr1B 588129831 588132745 2914 True 543.333333 704 86.461333 866 2416 3 chr1B.!!$R3 1550
19 TraesCS7B01G433300 chr1A 7341425 7343542 2117 False 3744.000000 3744 98.498000 2416 4544 1 chr1A.!!$F1 2128
20 TraesCS7B01G433300 chr2A 518942093 518944212 2119 False 3736.000000 3736 98.405000 2416 4546 1 chr2A.!!$F2 2130
21 TraesCS7B01G433300 chr2A 87863094 87864113 1019 False 1749.000000 1749 97.483000 3533 4562 1 chr2A.!!$F1 1029
22 TraesCS7B01G433300 chr2A 438230486 438230995 509 True 507.000000 507 84.601000 4545 5081 1 chr2A.!!$R1 536
23 TraesCS7B01G433300 chr7A 495453396 495455517 2121 False 3729.000000 3729 98.313000 2416 4548 1 chr7A.!!$F1 2132
24 TraesCS7B01G433300 chr7A 701491112 701495794 4682 False 1301.000000 2085 89.320750 1 6615 4 chr7A.!!$F2 6614
25 TraesCS7B01G433300 chr7A 708800035 708800785 750 False 422.000000 520 87.646000 2172 5081 2 chr7A.!!$F3 2909
26 TraesCS7B01G433300 chrUn 365539344 365540635 1291 True 2268.000000 2268 98.235000 2416 3717 1 chrUn.!!$R1 1301
27 TraesCS7B01G433300 chrUn 265494718 265497704 2986 True 543.333333 704 86.461333 866 2416 3 chrUn.!!$R2 1550
28 TraesCS7B01G433300 chr7D 611583175 611586586 3411 False 771.460000 1838 89.857600 779 6190 5 chr7D.!!$F2 5411
29 TraesCS7B01G433300 chr5B 604875451 604876436 985 True 1729.000000 1729 98.100000 3547 4546 1 chr5B.!!$R1 999
30 TraesCS7B01G433300 chr5B 39818373 39819121 748 True 423.500000 459 87.338000 2116 5020 2 chr5B.!!$R2 2904
31 TraesCS7B01G433300 chr5D 10215113 10217263 2150 True 657.333333 874 85.833333 865 5081 3 chr5D.!!$R1 4216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.179059 GGCCACCCAACCTGTTTTTG 60.179 55.000 0.00 0.00 0.00 2.44 F
499 500 0.439985 CATCTGACTTGTTGGTCGCG 59.560 55.000 0.00 0.00 38.91 5.87 F
1322 1543 0.598419 GCTCTTGTTGGCTTGTTGGC 60.598 55.000 0.00 0.00 42.18 4.52 F
1989 5275 1.138661 GAGAATGGCCAGGAGTCTGAG 59.861 57.143 13.05 0.00 43.49 3.35 F
2513 5985 0.037590 TGCATTCGTAAGGTGGCCTT 59.962 50.000 3.32 5.69 46.63 4.35 F
3621 7096 0.030705 TGAGCCCTTATCTGAGCCCT 60.031 55.000 0.00 0.00 0.00 5.19 F
3622 7097 1.135960 GAGCCCTTATCTGAGCCCTT 58.864 55.000 0.00 0.00 0.00 3.95 F
3623 7098 2.330216 GAGCCCTTATCTGAGCCCTTA 58.670 52.381 0.00 0.00 0.00 2.69 F
3624 7099 2.909662 GAGCCCTTATCTGAGCCCTTAT 59.090 50.000 0.00 0.00 0.00 1.73 F
4021 7524 2.945668 GACAAGAGAGTGCCACAAAAGT 59.054 45.455 0.00 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 1566 0.465287 TCAGCAGTTCAGTCAGTGCA 59.535 50.000 3.47 0.00 44.44 4.57 R
1346 1567 1.463831 CATCAGCAGTTCAGTCAGTGC 59.536 52.381 0.00 0.00 42.62 4.40 R
2513 5985 1.056660 GGACACTCCAAACTCCTCCA 58.943 55.000 0.00 0.00 36.28 3.86 R
2800 6272 2.452600 TTGACTTGGCCAATATCCCC 57.547 50.000 20.85 5.39 0.00 4.81 R
4165 7668 2.800881 TCATCATTCCGGACTCGATG 57.199 50.000 22.46 22.46 39.00 3.84 R
4798 8323 0.241481 TACGGCGCGCATATATGACA 59.759 50.000 34.42 3.55 0.00 3.58 R
4800 8325 0.524414 ACTACGGCGCGCATATATGA 59.476 50.000 34.42 9.11 0.00 2.15 R
4801 8326 1.059122 CAACTACGGCGCGCATATATG 59.941 52.381 34.42 19.30 0.00 1.78 R
4803 8328 1.279527 GCAACTACGGCGCGCATATA 61.280 55.000 34.42 19.61 0.00 0.86 R
5921 9519 0.453793 AACCTCTCGAGATCACTGCG 59.546 55.000 17.03 1.82 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.345741 CTCTTCTTGTGCAGGAGGACA 59.654 52.381 0.00 0.00 44.86 4.02
77 78 4.801891 CAAGCCCACATGATGCATATAAC 58.198 43.478 0.00 0.00 0.00 1.89
91 92 3.180584 GCATATAACACAAGAGTCGAGCG 59.819 47.826 0.00 0.00 0.00 5.03
206 207 2.025605 TGAATGCTTGAAGGAGAGGCAT 60.026 45.455 0.00 0.00 44.09 4.40
214 215 4.412796 TGAAGGAGAGGCATCAATACAG 57.587 45.455 0.00 0.00 0.00 2.74
239 240 3.567164 CCCTTCTGCTATGTATGCCAAAG 59.433 47.826 0.00 0.00 0.00 2.77
275 276 0.179059 GGCCACCCAACCTGTTTTTG 60.179 55.000 0.00 0.00 0.00 2.44
339 340 3.331889 TGGAAGAAGAGAGGCCAAATCTT 59.668 43.478 14.80 14.80 36.02 2.40
356 357 8.355169 GCCAAATCTTTCATGAAGCATATCTTA 58.645 33.333 8.41 0.00 34.56 2.10
405 406 1.889170 GGAAAAAGGAGGCAGGTGAAG 59.111 52.381 0.00 0.00 0.00 3.02
410 411 0.474660 AGGAGGCAGGTGAAGGAAGT 60.475 55.000 0.00 0.00 0.00 3.01
412 413 1.628846 GGAGGCAGGTGAAGGAAGTTA 59.371 52.381 0.00 0.00 0.00 2.24
421 422 4.822350 AGGTGAAGGAAGTTAAGTGCTTTC 59.178 41.667 6.25 6.25 0.00 2.62
423 424 5.241728 GGTGAAGGAAGTTAAGTGCTTTCAT 59.758 40.000 16.57 0.00 0.00 2.57
499 500 0.439985 CATCTGACTTGTTGGTCGCG 59.560 55.000 0.00 0.00 38.91 5.87
513 514 2.264813 GGTCGCGAACACTTTGCTATA 58.735 47.619 21.49 0.00 37.93 1.31
597 598 2.239907 GGAGTGGCTAAAGGTGGATCTT 59.760 50.000 0.00 0.00 0.00 2.40
609 610 2.422519 GGTGGATCTTGATGCTGGATGT 60.423 50.000 3.94 0.00 0.00 3.06
654 655 4.126524 GCGTGGGCTCTGGTTATC 57.873 61.111 0.00 0.00 35.83 1.75
659 660 2.167693 CGTGGGCTCTGGTTATCTGTTA 59.832 50.000 0.00 0.00 0.00 2.41
662 663 2.504175 GGGCTCTGGTTATCTGTTACCA 59.496 50.000 0.00 0.00 41.97 3.25
664 665 3.939592 GGCTCTGGTTATCTGTTACCAAC 59.060 47.826 0.00 0.00 43.46 3.77
672 673 9.342308 CTGGTTATCTGTTACCAACATATGATT 57.658 33.333 10.38 0.00 43.46 2.57
674 675 9.950680 GGTTATCTGTTACCAACATATGATTTG 57.049 33.333 10.38 4.40 41.26 2.32
686 688 9.364989 CCAACATATGATTTGTCCGTTAAAAAT 57.635 29.630 10.38 0.00 0.00 1.82
695 697 6.939551 TTGTCCGTTAAAAATAGTCTCTCG 57.060 37.500 0.00 0.00 0.00 4.04
711 713 7.820044 AGTCTCTCGTTTCATAATTCTTGTC 57.180 36.000 0.00 0.00 0.00 3.18
793 795 3.460103 CCAAACAAACATCAAAGCTGCT 58.540 40.909 0.00 0.00 0.00 4.24
831 833 1.238439 CAGCAAGAGAAGGCGGAAAA 58.762 50.000 0.00 0.00 34.54 2.29
832 834 1.198637 CAGCAAGAGAAGGCGGAAAAG 59.801 52.381 0.00 0.00 34.54 2.27
835 837 0.955919 AAGAGAAGGCGGAAAAGGCG 60.956 55.000 0.00 0.00 41.99 5.52
836 838 3.040414 GAGAAGGCGGAAAAGGCGC 62.040 63.158 0.00 0.00 41.99 6.53
955 1152 1.909302 TCCAATCTTCCACTCTGACCC 59.091 52.381 0.00 0.00 0.00 4.46
1099 1311 3.941483 CACCACCTCAGGTAATCATCAAC 59.059 47.826 0.00 0.00 40.77 3.18
1125 1337 2.588201 GGGCCTCATCCCGATCTCC 61.588 68.421 0.84 0.00 36.38 3.71
1260 1480 1.153529 ACTGTGTCGCCGTGTTCAA 60.154 52.632 0.00 0.00 0.00 2.69
1281 1502 7.589574 TCAATTGATGTGATGCAAAATTCTG 57.410 32.000 3.38 0.00 30.07 3.02
1290 1511 4.583907 TGATGCAAAATTCTGACTGGTTGA 59.416 37.500 0.00 0.00 0.00 3.18
1294 1515 6.855836 TGCAAAATTCTGACTGGTTGATATC 58.144 36.000 0.00 0.00 0.00 1.63
1295 1516 6.660521 TGCAAAATTCTGACTGGTTGATATCT 59.339 34.615 3.98 0.00 0.00 1.98
1296 1517 6.971184 GCAAAATTCTGACTGGTTGATATCTG 59.029 38.462 3.98 0.00 0.00 2.90
1297 1518 6.690194 AAATTCTGACTGGTTGATATCTGC 57.310 37.500 3.98 0.00 0.00 4.26
1307 1528 4.837298 TGGTTGATATCTGCATCTAGCTCT 59.163 41.667 3.98 0.00 45.94 4.09
1322 1543 0.598419 GCTCTTGTTGGCTTGTTGGC 60.598 55.000 0.00 0.00 42.18 4.52
1342 1563 4.721776 TGGCTACTGAAATTAGATGGAGGT 59.278 41.667 0.00 0.00 0.00 3.85
1343 1564 5.059833 GGCTACTGAAATTAGATGGAGGTG 58.940 45.833 0.00 0.00 0.00 4.00
1345 1566 6.116126 GCTACTGAAATTAGATGGAGGTGTT 58.884 40.000 0.00 0.00 0.00 3.32
1346 1567 6.037610 GCTACTGAAATTAGATGGAGGTGTTG 59.962 42.308 0.00 0.00 0.00 3.33
1347 1568 4.702131 ACTGAAATTAGATGGAGGTGTTGC 59.298 41.667 0.00 0.00 0.00 4.17
1348 1569 4.661222 TGAAATTAGATGGAGGTGTTGCA 58.339 39.130 0.00 0.00 0.00 4.08
1349 1570 4.458989 TGAAATTAGATGGAGGTGTTGCAC 59.541 41.667 0.00 0.00 0.00 4.57
1350 1571 4.307032 AATTAGATGGAGGTGTTGCACT 57.693 40.909 0.00 0.00 34.40 4.40
1351 1572 2.768253 TAGATGGAGGTGTTGCACTG 57.232 50.000 0.00 0.00 34.40 3.66
1358 1581 1.599542 GAGGTGTTGCACTGACTGAAC 59.400 52.381 0.00 0.00 34.40 3.18
1495 1718 1.556911 TCCTCATTCTGTTCTCCAGCC 59.443 52.381 0.00 0.00 41.25 4.85
1496 1719 1.280133 CCTCATTCTGTTCTCCAGCCA 59.720 52.381 0.00 0.00 41.25 4.75
1521 1759 4.097892 AGGAAAACATGTGCTCTTTTTCGT 59.902 37.500 0.00 3.52 38.36 3.85
1533 1771 5.163663 TGCTCTTTTTCGTGTTCAGTGAATT 60.164 36.000 9.18 0.00 0.00 2.17
1566 1921 5.824624 AGCCACAATAAGATGATAACACCAG 59.175 40.000 0.00 0.00 0.00 4.00
1575 1930 9.797642 ATAAGATGATAACACCAGCAAATATCA 57.202 29.630 0.00 0.00 37.38 2.15
1579 1934 6.550843 TGATAACACCAGCAAATATCAAACG 58.449 36.000 0.00 0.00 31.86 3.60
1631 1986 6.957920 TTTTGTGGTTCAGAATTGATGAGA 57.042 33.333 0.00 0.00 32.27 3.27
1633 1988 7.528996 TTTGTGGTTCAGAATTGATGAGAAT 57.471 32.000 0.00 0.00 32.27 2.40
1636 1991 4.951715 TGGTTCAGAATTGATGAGAATGGG 59.048 41.667 0.00 0.00 32.27 4.00
1659 2014 5.163784 GGGAAATTAGAACTTAAGACACCGC 60.164 44.000 10.09 0.00 0.00 5.68
1729 2089 5.179742 ACGTGGATAACTAGCTAAGATCTCG 59.820 44.000 0.00 9.31 0.00 4.04
1752 2112 2.660572 AGAGCGAGGAATAGCAAGAGA 58.339 47.619 0.00 0.00 35.48 3.10
1761 2121 5.486526 AGGAATAGCAAGAGAAACTGTCTG 58.513 41.667 0.00 0.00 36.41 3.51
1762 2122 4.094146 GGAATAGCAAGAGAAACTGTCTGC 59.906 45.833 0.00 0.00 36.41 4.26
1769 2138 4.363991 AGAGAAACTGTCTGCCTCAAAT 57.636 40.909 0.00 0.00 36.41 2.32
1773 2142 5.569630 GAGAAACTGTCTGCCTCAAATAGGA 60.570 44.000 0.00 0.00 42.08 2.94
1868 3613 9.972106 ATTAGAAATCCTGAATCTCAGTCTTTT 57.028 29.630 3.15 0.66 42.80 2.27
1924 3669 6.285990 TGTTTGACAAACCTACTTCCTCTAC 58.714 40.000 24.58 0.00 40.67 2.59
1932 3677 5.873146 ACCTACTTCCTCTACCTAATTGC 57.127 43.478 0.00 0.00 0.00 3.56
1989 5275 1.138661 GAGAATGGCCAGGAGTCTGAG 59.861 57.143 13.05 0.00 43.49 3.35
2180 5470 3.244735 TGCTTTTACAGGGTGAGCATACA 60.245 43.478 0.00 0.00 38.33 2.29
2181 5471 3.756434 GCTTTTACAGGGTGAGCATACAA 59.244 43.478 0.00 0.00 33.68 2.41
2197 5487 7.100458 AGCATACAAAACTCTTTCTTTGTGT 57.900 32.000 9.77 1.57 43.69 3.72
2205 5497 5.597813 ACTCTTTCTTTGTGTAATGAGCG 57.402 39.130 0.00 0.00 32.78 5.03
2485 5957 2.426522 CGGACAATGTGTGGATGAAGT 58.573 47.619 0.00 0.00 0.00 3.01
2513 5985 0.037590 TGCATTCGTAAGGTGGCCTT 59.962 50.000 3.32 5.69 46.63 4.35
2608 6080 5.123027 CAGAAGGCGCTTAAAGAGAAGAAAT 59.877 40.000 7.64 0.00 0.00 2.17
2800 6272 1.455959 ATCCGGGAGAGGAAGACGG 60.456 63.158 0.00 0.00 44.50 4.79
2895 6367 0.458669 GATGGCGGGAGTACTTCGAA 59.541 55.000 19.25 0.00 0.00 3.71
3004 6476 1.431243 AGGAGTCTGAGGTGAAGGAGT 59.569 52.381 0.00 0.00 0.00 3.85
3502 6976 2.936498 CCAGCAAAGTACATTACCCTCG 59.064 50.000 0.00 0.00 0.00 4.63
3615 7090 2.941720 GTCAGCTTTGAGCCCTTATCTG 59.058 50.000 0.00 0.00 43.77 2.90
3616 7091 2.840038 TCAGCTTTGAGCCCTTATCTGA 59.160 45.455 0.00 0.00 43.77 3.27
3617 7092 3.118482 TCAGCTTTGAGCCCTTATCTGAG 60.118 47.826 0.00 0.00 43.77 3.35
3618 7093 1.946081 GCTTTGAGCCCTTATCTGAGC 59.054 52.381 0.00 0.00 34.48 4.26
3619 7094 2.570135 CTTTGAGCCCTTATCTGAGCC 58.430 52.381 0.00 0.00 0.00 4.70
3620 7095 0.839946 TTGAGCCCTTATCTGAGCCC 59.160 55.000 0.00 0.00 0.00 5.19
3621 7096 0.030705 TGAGCCCTTATCTGAGCCCT 60.031 55.000 0.00 0.00 0.00 5.19
3622 7097 1.135960 GAGCCCTTATCTGAGCCCTT 58.864 55.000 0.00 0.00 0.00 3.95
3623 7098 2.330216 GAGCCCTTATCTGAGCCCTTA 58.670 52.381 0.00 0.00 0.00 2.69
3624 7099 2.909662 GAGCCCTTATCTGAGCCCTTAT 59.090 50.000 0.00 0.00 0.00 1.73
4021 7524 2.945668 GACAAGAGAGTGCCACAAAAGT 59.054 45.455 0.00 0.00 0.00 2.66
4165 7668 3.050275 GTGGCCACACGAGGAAGC 61.050 66.667 31.23 0.00 37.94 3.86
4664 8167 8.539770 TTTACATTGTGAAAGAAGCAAACAAA 57.460 26.923 0.00 0.00 34.67 2.83
4665 8168 8.539770 TTACATTGTGAAAGAAGCAAACAAAA 57.460 26.923 0.00 0.00 34.67 2.44
4666 8169 7.614124 ACATTGTGAAAGAAGCAAACAAAAT 57.386 28.000 0.00 0.00 34.67 1.82
4667 8170 8.042944 ACATTGTGAAAGAAGCAAACAAAATT 57.957 26.923 0.00 0.00 34.67 1.82
4668 8171 8.513774 ACATTGTGAAAGAAGCAAACAAAATTT 58.486 25.926 0.00 0.00 34.67 1.82
4669 8172 9.985318 CATTGTGAAAGAAGCAAACAAAATTTA 57.015 25.926 0.00 0.00 34.67 1.40
4728 8234 8.701908 ATTATGTATCTTCATGCTTTCACCAT 57.298 30.769 0.00 0.00 0.00 3.55
4794 8319 8.791327 TTCAGTTACATATCTTCATGCTTTGA 57.209 30.769 0.00 0.00 0.00 2.69
4795 8320 8.201554 TCAGTTACATATCTTCATGCTTTGAC 57.798 34.615 0.00 0.00 32.84 3.18
4796 8321 7.823799 TCAGTTACATATCTTCATGCTTTGACA 59.176 33.333 0.00 0.00 32.84 3.58
4797 8322 8.618677 CAGTTACATATCTTCATGCTTTGACAT 58.381 33.333 0.00 0.00 32.84 3.06
4798 8323 9.182214 AGTTACATATCTTCATGCTTTGACATT 57.818 29.630 0.00 0.00 32.84 2.71
4799 8324 9.229784 GTTACATATCTTCATGCTTTGACATTG 57.770 33.333 0.00 0.00 32.84 2.82
4800 8325 7.400599 ACATATCTTCATGCTTTGACATTGT 57.599 32.000 0.00 0.00 32.84 2.71
4801 8326 7.478322 ACATATCTTCATGCTTTGACATTGTC 58.522 34.615 9.93 9.93 32.84 3.18
4802 8327 5.970317 ATCTTCATGCTTTGACATTGTCA 57.030 34.783 15.41 15.41 41.09 3.58
4803 8328 5.970317 TCTTCATGCTTTGACATTGTCAT 57.030 34.783 19.63 2.24 42.40 3.06
4804 8329 7.634671 ATCTTCATGCTTTGACATTGTCATA 57.365 32.000 19.63 14.04 42.40 2.15
4805 8330 7.634671 TCTTCATGCTTTGACATTGTCATAT 57.365 32.000 19.63 9.65 42.40 1.78
4806 8331 8.735692 TCTTCATGCTTTGACATTGTCATATA 57.264 30.769 19.63 2.99 42.40 0.86
4807 8332 9.346005 TCTTCATGCTTTGACATTGTCATATAT 57.654 29.630 19.63 9.87 42.40 0.86
4808 8333 9.394477 CTTCATGCTTTGACATTGTCATATATG 57.606 33.333 19.63 18.68 42.40 1.78
4809 8334 7.364970 TCATGCTTTGACATTGTCATATATGC 58.635 34.615 19.63 17.20 42.40 3.14
4810 8335 5.750650 TGCTTTGACATTGTCATATATGCG 58.249 37.500 19.63 5.00 42.40 4.73
4826 8354 2.954868 CGCGCCGTAGTTGCTAGG 60.955 66.667 0.00 0.00 0.00 3.02
4831 8359 1.798079 CGCCGTAGTTGCTAGGACTTC 60.798 57.143 0.00 0.00 0.00 3.01
4838 8366 4.965200 AGTTGCTAGGACTTCTGAGTTT 57.035 40.909 0.00 0.00 35.88 2.66
4840 8368 5.685728 AGTTGCTAGGACTTCTGAGTTTTT 58.314 37.500 0.00 0.00 35.88 1.94
4885 8421 8.561738 TTTTGAAGGTTATCCAAGAGTATGTC 57.438 34.615 0.00 0.00 35.89 3.06
5033 8569 8.621286 GGATACAAACAATAAACTACATCTGGG 58.379 37.037 0.00 0.00 0.00 4.45
5114 8651 1.862827 GTGTACACAAACGGGACTGTC 59.137 52.381 21.14 0.00 0.00 3.51
5123 8660 1.633774 ACGGGACTGTCTGTGATCTT 58.366 50.000 7.85 0.00 0.00 2.40
5126 8663 2.159226 CGGGACTGTCTGTGATCTTACC 60.159 54.545 7.85 0.00 0.00 2.85
5153 8690 0.179145 CGCGGTACACAGAGGTAAGG 60.179 60.000 0.00 0.00 0.00 2.69
5157 8694 3.846360 CGGTACACAGAGGTAAGGAAAG 58.154 50.000 0.00 0.00 0.00 2.62
5166 8706 6.717084 CACAGAGGTAAGGAAAGAAAGGAAAT 59.283 38.462 0.00 0.00 0.00 2.17
5171 8711 8.637196 AGGTAAGGAAAGAAAGGAAATTACTG 57.363 34.615 0.00 0.00 0.00 2.74
5181 8721 9.753674 AAGAAAGGAAATTACTGTTATGATCCA 57.246 29.630 11.87 0.00 0.00 3.41
5185 8725 9.479549 AAGGAAATTACTGTTATGATCCATGTT 57.520 29.630 11.87 0.10 0.00 2.71
5186 8726 9.479549 AGGAAATTACTGTTATGATCCATGTTT 57.520 29.630 11.87 0.00 0.00 2.83
5190 8735 9.859427 AATTACTGTTATGATCCATGTTTGTTG 57.141 29.630 0.00 0.00 0.00 3.33
5192 8737 7.288810 ACTGTTATGATCCATGTTTGTTGTT 57.711 32.000 0.00 0.00 0.00 2.83
5202 8748 4.744631 CCATGTTTGTTGTTACTTCAAGCC 59.255 41.667 0.00 0.00 0.00 4.35
5210 8756 5.527951 TGTTGTTACTTCAAGCCGTTTGATA 59.472 36.000 0.00 0.00 44.90 2.15
5214 8760 4.749245 ACTTCAAGCCGTTTGATAACTG 57.251 40.909 0.00 0.00 44.90 3.16
5220 8766 1.401018 GCCGTTTGATAACTGTGGTGC 60.401 52.381 0.00 0.00 31.89 5.01
5223 8769 1.544246 GTTTGATAACTGTGGTGCCCC 59.456 52.381 0.00 0.00 0.00 5.80
5242 8791 4.342092 GCCCCATTGAGTAGTGCATTTAAT 59.658 41.667 0.00 0.00 0.00 1.40
5243 8792 5.737063 GCCCCATTGAGTAGTGCATTTAATG 60.737 44.000 0.00 0.00 0.00 1.90
5248 8797 6.995511 TTGAGTAGTGCATTTAATGGTACC 57.004 37.500 4.43 4.43 0.00 3.34
5253 8806 4.344104 AGTGCATTTAATGGTACCTTGCT 58.656 39.130 14.36 0.00 0.00 3.91
5289 8842 3.018423 AGGTTTGTTTGTTCTGAGCCT 57.982 42.857 0.00 0.00 0.00 4.58
5343 8896 7.759489 ATCTTCCTGCAAGTATGTTTTAACA 57.241 32.000 0.00 0.00 37.05 2.41
5384 8937 3.890147 TGCAAAAACCCGTAAGTACCATT 59.110 39.130 0.00 0.00 0.00 3.16
5420 8996 7.439356 TCTTCTGTTGACAGTCTCTTATTGTTG 59.561 37.037 10.66 0.00 44.12 3.33
5458 9034 1.288127 CCTTGTTCTGCTTGCAGGC 59.712 57.895 20.62 14.88 0.00 4.85
5528 9104 1.674057 CCGAAGCAGAAGGTGAGGT 59.326 57.895 0.00 0.00 0.00 3.85
5550 9126 1.020333 CCGAGGACGACGACTCTCTT 61.020 60.000 17.42 0.00 42.66 2.85
5651 9227 1.264749 AATCACGGTGCCCTCAGCTA 61.265 55.000 2.51 0.00 44.23 3.32
5818 9407 4.917906 AGATTAAGGGCAAAGAGTGTCT 57.082 40.909 0.00 0.00 30.18 3.41
5828 9417 4.307432 GCAAAGAGTGTCTTGCTGTACTA 58.693 43.478 0.00 0.00 36.71 1.82
5833 9422 8.459635 CAAAGAGTGTCTTGCTGTACTATAGTA 58.540 37.037 8.59 8.59 36.71 1.82
5834 9423 7.987649 AAGAGTGTCTTGCTGTACTATAGTAC 58.012 38.462 28.78 28.78 41.89 2.73
5870 9459 7.504924 TTAGTAAAGGGTGTGTTTGAGATTG 57.495 36.000 0.00 0.00 0.00 2.67
5872 9461 6.126409 AGTAAAGGGTGTGTTTGAGATTGAA 58.874 36.000 0.00 0.00 0.00 2.69
5875 9464 4.728772 AGGGTGTGTTTGAGATTGAATGA 58.271 39.130 0.00 0.00 0.00 2.57
5886 9484 6.046290 TGAGATTGAATGACAGACATCACT 57.954 37.500 0.00 0.00 38.38 3.41
5921 9519 9.248291 TCTTCTTGAAATGTTCATAAAAACAGC 57.752 29.630 0.00 0.00 42.09 4.40
5932 9530 2.977405 AAAAACAGCGCAGTGATCTC 57.023 45.000 11.47 0.00 0.00 2.75
5948 9546 1.040646 TCTCGAGAGGTTGTGCTTGT 58.959 50.000 12.08 0.00 0.00 3.16
5951 9549 3.258372 TCTCGAGAGGTTGTGCTTGTTAT 59.742 43.478 12.08 0.00 0.00 1.89
5952 9550 3.997021 CTCGAGAGGTTGTGCTTGTTATT 59.003 43.478 6.58 0.00 0.00 1.40
5953 9551 4.385825 TCGAGAGGTTGTGCTTGTTATTT 58.614 39.130 0.00 0.00 0.00 1.40
5954 9552 4.213270 TCGAGAGGTTGTGCTTGTTATTTG 59.787 41.667 0.00 0.00 0.00 2.32
5955 9553 4.024048 CGAGAGGTTGTGCTTGTTATTTGT 60.024 41.667 0.00 0.00 0.00 2.83
5956 9554 5.186996 AGAGGTTGTGCTTGTTATTTGTG 57.813 39.130 0.00 0.00 0.00 3.33
5984 9596 2.575279 AGAGATTGCAGGACCATCTTGT 59.425 45.455 0.00 0.00 0.00 3.16
5985 9597 2.681848 GAGATTGCAGGACCATCTTGTG 59.318 50.000 0.00 0.00 0.00 3.33
5986 9598 2.306805 AGATTGCAGGACCATCTTGTGA 59.693 45.455 0.00 0.00 0.00 3.58
5987 9599 2.885135 TTGCAGGACCATCTTGTGAT 57.115 45.000 0.00 0.00 0.00 3.06
5988 9600 3.998913 TTGCAGGACCATCTTGTGATA 57.001 42.857 0.00 0.00 0.00 2.15
5994 9606 3.713248 AGGACCATCTTGTGATATGAGCA 59.287 43.478 0.00 0.00 0.00 4.26
6015 9627 4.672801 GCAAAGGTAGTGCTTGCTTATGAC 60.673 45.833 0.00 0.00 41.74 3.06
6023 9635 3.873361 GTGCTTGCTTATGACTGCAGATA 59.127 43.478 23.35 9.05 40.46 1.98
6191 9806 3.326747 AGTACACCGTGCTGAAGAAATC 58.673 45.455 0.00 0.00 0.00 2.17
6192 9807 2.550830 ACACCGTGCTGAAGAAATCT 57.449 45.000 0.00 0.00 0.00 2.40
6193 9808 2.146342 ACACCGTGCTGAAGAAATCTG 58.854 47.619 0.00 0.00 0.00 2.90
6195 9810 1.072331 ACCGTGCTGAAGAAATCTGGT 59.928 47.619 0.00 0.00 0.00 4.00
6196 9811 2.154462 CCGTGCTGAAGAAATCTGGTT 58.846 47.619 0.00 0.00 0.00 3.67
6197 9812 2.095567 CCGTGCTGAAGAAATCTGGTTG 60.096 50.000 0.00 0.00 0.00 3.77
6199 9814 3.364366 CGTGCTGAAGAAATCTGGTTGTC 60.364 47.826 0.00 0.00 0.00 3.18
6201 9816 4.036734 GTGCTGAAGAAATCTGGTTGTCAA 59.963 41.667 0.00 0.00 0.00 3.18
6202 9817 4.644234 TGCTGAAGAAATCTGGTTGTCAAA 59.356 37.500 0.00 0.00 0.00 2.69
6203 9818 4.978580 GCTGAAGAAATCTGGTTGTCAAAC 59.021 41.667 0.00 0.00 35.40 2.93
6204 9819 5.450412 GCTGAAGAAATCTGGTTGTCAAACA 60.450 40.000 2.71 2.71 38.10 2.83
6213 9854 3.357203 TGGTTGTCAAACAAGGTGCTTA 58.643 40.909 0.00 0.00 39.00 3.09
6230 9871 3.274288 GCTTAGCATAGTCACTGGCTTT 58.726 45.455 10.67 0.00 37.79 3.51
6231 9872 3.691609 GCTTAGCATAGTCACTGGCTTTT 59.308 43.478 10.67 0.00 37.79 2.27
6232 9873 4.156739 GCTTAGCATAGTCACTGGCTTTTT 59.843 41.667 10.67 0.00 37.79 1.94
6248 9889 3.501445 GCTTTTTATGCAATGCAACCCAA 59.499 39.130 13.45 2.60 43.62 4.12
6249 9890 4.156373 GCTTTTTATGCAATGCAACCCAAT 59.844 37.500 13.45 0.00 43.62 3.16
6256 9897 5.456548 TGCAATGCAACCCAATATCATAG 57.543 39.130 5.01 0.00 34.76 2.23
6271 9912 7.256048 CCAATATCATAGGCATTTTGTGGACAT 60.256 37.037 0.00 0.00 0.00 3.06
6274 9916 6.698008 TCATAGGCATTTTGTGGACATAAG 57.302 37.500 0.00 0.00 0.00 1.73
6277 9919 4.151883 AGGCATTTTGTGGACATAAGTGT 58.848 39.130 0.00 0.00 42.49 3.55
6296 9938 9.836864 ATAAGTGTGATAGCATGAGTTTTATCA 57.163 29.630 0.00 0.00 31.90 2.15
6297 9939 8.565896 AAGTGTGATAGCATGAGTTTTATCAA 57.434 30.769 0.00 0.00 35.12 2.57
6298 9940 8.565896 AGTGTGATAGCATGAGTTTTATCAAA 57.434 30.769 0.00 0.00 35.12 2.69
6299 9941 8.671921 AGTGTGATAGCATGAGTTTTATCAAAG 58.328 33.333 0.00 0.00 35.12 2.77
6300 9942 7.430502 GTGTGATAGCATGAGTTTTATCAAAGC 59.569 37.037 0.00 0.00 35.12 3.51
6302 9944 6.830324 TGATAGCATGAGTTTTATCAAAGCCT 59.170 34.615 0.00 0.00 35.87 4.58
6303 9945 5.990120 AGCATGAGTTTTATCAAAGCCTT 57.010 34.783 0.00 0.00 35.87 4.35
6304 9946 5.958955 AGCATGAGTTTTATCAAAGCCTTC 58.041 37.500 0.00 0.00 35.87 3.46
6305 9947 5.713861 AGCATGAGTTTTATCAAAGCCTTCT 59.286 36.000 0.00 0.00 35.87 2.85
6306 9948 6.210185 AGCATGAGTTTTATCAAAGCCTTCTT 59.790 34.615 0.00 0.00 35.87 2.52
6323 10003 7.836842 AGCCTTCTTTGTAAGAAAGAAAAACA 58.163 30.769 11.58 0.00 46.13 2.83
6369 10049 2.229792 TGACAACCAGATTGCCTTGAC 58.770 47.619 0.00 0.00 42.62 3.18
6374 10054 0.329261 CCAGATTGCCTTGACTCCCA 59.671 55.000 0.00 0.00 0.00 4.37
6383 10063 1.152030 TTGACTCCCACCCTCAGCT 60.152 57.895 0.00 0.00 0.00 4.24
6392 10072 1.202806 CCACCCTCAGCTGTTTCTTCA 60.203 52.381 14.67 0.00 0.00 3.02
6393 10073 2.553904 CCACCCTCAGCTGTTTCTTCAT 60.554 50.000 14.67 0.00 0.00 2.57
6395 10075 2.373169 ACCCTCAGCTGTTTCTTCATCA 59.627 45.455 14.67 0.00 0.00 3.07
6396 10076 2.746362 CCCTCAGCTGTTTCTTCATCAC 59.254 50.000 14.67 0.00 0.00 3.06
6416 10096 4.832248 CACTACTGTGATGTAACATGGGT 58.168 43.478 0.00 0.00 46.55 4.51
6426 10107 4.649267 TGTAACATGGGTGGAGATTTCA 57.351 40.909 0.00 0.00 0.00 2.69
6434 10115 4.361783 TGGGTGGAGATTTCACAGAGATA 58.638 43.478 0.00 0.00 36.90 1.98
6461 10142 9.308318 CTACTTCTATTTTCTAAGCTCTGAACC 57.692 37.037 0.00 0.00 0.00 3.62
6464 10145 8.498054 TTCTATTTTCTAAGCTCTGAACCATG 57.502 34.615 0.00 0.00 0.00 3.66
6465 10146 7.050377 TCTATTTTCTAAGCTCTGAACCATGG 58.950 38.462 11.19 11.19 0.00 3.66
6466 10147 3.634397 TTCTAAGCTCTGAACCATGGG 57.366 47.619 18.09 0.00 0.00 4.00
6467 10148 1.210478 TCTAAGCTCTGAACCATGGGC 59.790 52.381 18.09 8.58 0.00 5.36
6468 10149 0.107703 TAAGCTCTGAACCATGGGCG 60.108 55.000 18.09 0.92 0.00 6.13
6484 10165 2.335712 GCGGCTCCTTGTTCTTGGG 61.336 63.158 0.00 0.00 0.00 4.12
6485 10166 1.073199 CGGCTCCTTGTTCTTGGGT 59.927 57.895 0.00 0.00 0.00 4.51
6486 10167 0.323629 CGGCTCCTTGTTCTTGGGTA 59.676 55.000 0.00 0.00 0.00 3.69
6504 10185 5.690865 TGGGTATAGCATCCAAAGGTAAAG 58.309 41.667 4.02 0.00 0.00 1.85
6522 10203 6.723977 AGGTAAAGTTATCAAAAGAATGGCCA 59.276 34.615 8.56 8.56 0.00 5.36
6540 10221 1.617804 CCAGGCCATCCAAACATCTGT 60.618 52.381 5.01 0.00 33.74 3.41
6542 10223 2.684881 CAGGCCATCCAAACATCTGTAC 59.315 50.000 5.01 0.00 33.74 2.90
6565 10246 5.872070 ACTCAGAAGTAAGTAGCATCTTTGC 59.128 40.000 0.00 0.00 40.85 3.68
6600 10281 6.961360 TTCTTCACTTCAGAACAGTCTCTA 57.039 37.500 0.00 0.00 28.78 2.43
6609 10290 6.821031 TCAGAACAGTCTCTACTTTCTACC 57.179 41.667 0.00 0.00 34.32 3.18
6615 10296 4.575645 CAGTCTCTACTTTCTACCGGTAGG 59.424 50.000 35.39 24.02 37.43 3.18
6616 10297 4.227073 AGTCTCTACTTTCTACCGGTAGGT 59.773 45.833 35.39 27.64 43.53 3.08
6617 10298 5.426833 AGTCTCTACTTTCTACCGGTAGGTA 59.573 44.000 35.39 27.33 40.52 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.018226 CCTCCTGCACAAGAAGAGCG 61.018 60.000 0.00 0.00 36.53 5.03
40 41 1.433064 CTTGCACACCACTGCGTTT 59.567 52.632 0.00 0.00 40.31 3.60
41 42 3.110139 CTTGCACACCACTGCGTT 58.890 55.556 0.00 0.00 40.31 4.84
43 44 4.332637 GGCTTGCACACCACTGCG 62.333 66.667 0.00 0.00 40.31 5.18
77 78 0.730834 CTCCACGCTCGACTCTTGTG 60.731 60.000 0.00 0.00 0.00 3.33
91 92 3.306294 CCAAGCTCCAAATTTTCCTCCAC 60.306 47.826 0.00 0.00 0.00 4.02
132 133 5.388654 AGTGAGTCTCCAAATGAAATGGTT 58.611 37.500 0.00 0.00 39.09 3.67
214 215 2.551071 GGCATACATAGCAGAAGGGGTC 60.551 54.545 0.00 0.00 0.00 4.46
239 240 0.603065 GCCACCACCTCCATTTTGTC 59.397 55.000 0.00 0.00 0.00 3.18
275 276 7.339466 ACCACCAATTTCACATATTTAGGTCTC 59.661 37.037 0.00 0.00 0.00 3.36
318 319 3.643199 AGATTTGGCCTCTCTTCTTCC 57.357 47.619 3.32 0.00 0.00 3.46
377 378 3.954258 CTGCCTCCTTTTTCCGGAATATT 59.046 43.478 19.62 0.00 0.00 1.28
383 384 1.074951 ACCTGCCTCCTTTTTCCGG 59.925 57.895 0.00 0.00 0.00 5.14
391 392 0.474660 ACTTCCTTCACCTGCCTCCT 60.475 55.000 0.00 0.00 0.00 3.69
405 406 4.379918 GGCTCATGAAAGCACTTAACTTCC 60.380 45.833 8.97 0.00 44.35 3.46
410 411 3.374988 CGATGGCTCATGAAAGCACTTAA 59.625 43.478 8.97 0.00 44.35 1.85
412 413 1.741706 CGATGGCTCATGAAAGCACTT 59.258 47.619 8.97 0.00 44.35 3.16
513 514 5.106157 CCATCGGCTCAAGTTTAGTGAATTT 60.106 40.000 0.00 0.00 0.00 1.82
597 598 1.221566 CCACCGACATCCAGCATCA 59.778 57.895 0.00 0.00 0.00 3.07
609 610 0.603065 CTGATGACACAGTCCACCGA 59.397 55.000 0.00 0.00 33.73 4.69
659 660 7.455641 TTTAACGGACAAATCATATGTTGGT 57.544 32.000 1.90 0.52 0.00 3.67
672 673 6.449698 ACGAGAGACTATTTTTAACGGACAA 58.550 36.000 0.00 0.00 0.00 3.18
674 675 6.941218 AACGAGAGACTATTTTTAACGGAC 57.059 37.500 0.00 0.00 0.00 4.79
686 688 7.696872 CGACAAGAATTATGAAACGAGAGACTA 59.303 37.037 0.00 0.00 0.00 2.59
688 690 6.308282 ACGACAAGAATTATGAAACGAGAGAC 59.692 38.462 0.00 0.00 0.00 3.36
902 1099 1.596895 AAGAGTCGCTTCCTCCGTCC 61.597 60.000 0.00 0.00 28.17 4.79
908 1105 1.976112 GACCCAAGAGTCGCTTCCT 59.024 57.895 0.00 0.00 33.60 3.36
955 1152 2.835705 CGGAGATCGGTCGGGAGTG 61.836 68.421 0.00 0.00 34.75 3.51
1260 1480 6.811665 CAGTCAGAATTTTGCATCACATCAAT 59.188 34.615 0.00 0.00 0.00 2.57
1281 1502 4.928615 GCTAGATGCAGATATCAACCAGTC 59.071 45.833 5.32 0.00 42.31 3.51
1290 1511 5.549347 CCAACAAGAGCTAGATGCAGATAT 58.451 41.667 0.00 0.00 45.94 1.63
1294 1515 1.669779 GCCAACAAGAGCTAGATGCAG 59.330 52.381 0.00 0.00 45.94 4.41
1295 1516 1.280133 AGCCAACAAGAGCTAGATGCA 59.720 47.619 0.00 0.00 45.94 3.96
1296 1517 2.035530 AGCCAACAAGAGCTAGATGC 57.964 50.000 0.00 0.00 37.64 3.91
1297 1518 3.341823 ACAAGCCAACAAGAGCTAGATG 58.658 45.455 0.00 0.00 38.74 2.90
1307 1528 1.680735 CAGTAGCCAACAAGCCAACAA 59.319 47.619 0.00 0.00 0.00 2.83
1322 1543 6.037610 GCAACACCTCCATCTAATTTCAGTAG 59.962 42.308 0.00 0.00 0.00 2.57
1342 1563 1.016627 GCAGTTCAGTCAGTGCAACA 58.983 50.000 0.00 0.00 41.99 3.33
1343 1564 1.003116 CAGCAGTTCAGTCAGTGCAAC 60.003 52.381 3.47 0.00 44.44 4.17
1345 1566 0.465287 TCAGCAGTTCAGTCAGTGCA 59.535 50.000 3.47 0.00 44.44 4.57
1346 1567 1.463831 CATCAGCAGTTCAGTCAGTGC 59.536 52.381 0.00 0.00 42.62 4.40
1347 1568 3.036075 TCATCAGCAGTTCAGTCAGTG 57.964 47.619 0.00 0.00 0.00 3.66
1348 1569 3.977134 ATCATCAGCAGTTCAGTCAGT 57.023 42.857 0.00 0.00 0.00 3.41
1349 1570 5.180680 TGAAAATCATCAGCAGTTCAGTCAG 59.819 40.000 0.00 0.00 0.00 3.51
1350 1571 5.065235 TGAAAATCATCAGCAGTTCAGTCA 58.935 37.500 0.00 0.00 0.00 3.41
1351 1572 5.391736 CCTGAAAATCATCAGCAGTTCAGTC 60.392 44.000 9.60 0.00 44.43 3.51
1358 1581 3.672511 GCACACCTGAAAATCATCAGCAG 60.673 47.826 0.00 0.00 44.43 4.24
1430 1653 1.514087 GTGGTAGGGCGAATCGACA 59.486 57.895 11.79 0.00 36.10 4.35
1495 1718 3.996150 AAGAGCACATGTTTTCCTGTG 57.004 42.857 0.00 0.00 45.02 3.66
1496 1719 5.343307 AAAAAGAGCACATGTTTTCCTGT 57.657 34.783 0.00 0.00 33.51 4.00
1521 1759 5.009610 GGCTTAAACTCCAATTCACTGAACA 59.990 40.000 0.00 0.00 0.00 3.18
1533 1771 6.480763 TCATCTTATTGTGGCTTAAACTCCA 58.519 36.000 0.00 0.00 0.00 3.86
1566 1921 6.919662 ACATGGATTGATCGTTTGATATTTGC 59.080 34.615 0.00 0.00 34.09 3.68
1575 1930 7.279615 TGGTTATCTACATGGATTGATCGTTT 58.720 34.615 0.00 0.00 0.00 3.60
1579 1934 8.627208 AACATGGTTATCTACATGGATTGATC 57.373 34.615 9.17 0.00 46.60 2.92
1614 1969 4.340381 CCCCATTCTCATCAATTCTGAACC 59.660 45.833 0.00 0.00 34.49 3.62
1626 1981 9.413734 CTTAAGTTCTAATTTCCCCATTCTCAT 57.586 33.333 0.00 0.00 0.00 2.90
1627 1982 8.611257 TCTTAAGTTCTAATTTCCCCATTCTCA 58.389 33.333 1.63 0.00 0.00 3.27
1631 1986 7.396339 GGTGTCTTAAGTTCTAATTTCCCCATT 59.604 37.037 1.63 0.00 0.00 3.16
1633 1988 6.243148 GGTGTCTTAAGTTCTAATTTCCCCA 58.757 40.000 1.63 0.00 0.00 4.96
1636 1991 5.410439 TGCGGTGTCTTAAGTTCTAATTTCC 59.590 40.000 1.63 0.00 0.00 3.13
1688 2046 4.394610 TCCACGTTTAACATGTCATGGATG 59.605 41.667 17.08 7.79 30.08 3.51
1706 2064 5.408909 TCGAGATCTTAGCTAGTTATCCACG 59.591 44.000 0.00 14.98 0.00 4.94
1729 2089 3.786635 TCTTGCTATTCCTCGCTCTTTC 58.213 45.455 0.00 0.00 0.00 2.62
1752 2112 4.287067 TCTCCTATTTGAGGCAGACAGTTT 59.713 41.667 0.00 0.00 46.25 2.66
1761 2121 2.362717 AGCGTACTCTCCTATTTGAGGC 59.637 50.000 0.00 0.00 46.25 4.70
1769 2138 5.335740 GCATTGCTTATAGCGTACTCTCCTA 60.336 44.000 0.16 0.00 46.26 2.94
1773 2142 4.592485 AGCATTGCTTATAGCGTACTCT 57.408 40.909 5.03 0.00 46.26 3.24
1776 2145 7.010023 GTGAATTAGCATTGCTTATAGCGTAC 58.990 38.462 17.71 5.46 46.26 3.67
1779 2148 5.049474 TGGTGAATTAGCATTGCTTATAGCG 60.049 40.000 17.71 0.00 46.26 4.26
1868 3613 3.317993 GCAGCAAGGACTTTTGGTAAGAA 59.682 43.478 0.00 0.00 36.71 2.52
1924 3669 6.664515 TCTTTCGTTAACAGTTGCAATTAGG 58.335 36.000 0.59 0.00 0.00 2.69
1932 3677 6.792250 CAGCAAGTATCTTTCGTTAACAGTTG 59.208 38.462 6.39 4.96 0.00 3.16
1989 5275 2.047655 TCGTGGTCCGTCATTGGC 60.048 61.111 0.00 0.00 37.94 4.52
2100 5386 3.316868 CCTTTGGCTTAACTTTCCGTTCA 59.683 43.478 0.00 0.00 37.05 3.18
2180 5470 6.912591 CGCTCATTACACAAAGAAAGAGTTTT 59.087 34.615 0.00 0.00 0.00 2.43
2181 5471 6.430451 CGCTCATTACACAAAGAAAGAGTTT 58.570 36.000 0.00 0.00 0.00 2.66
2197 5487 3.244526 ACATATGTCCCATGCGCTCATTA 60.245 43.478 9.73 0.00 0.00 1.90
2205 5497 3.290710 AGACCAAACATATGTCCCATGC 58.709 45.455 9.23 0.00 0.00 4.06
2245 5537 7.982919 CAGATCATTTTTCAGGCATTCCATTAA 59.017 33.333 0.00 0.00 33.74 1.40
2513 5985 1.056660 GGACACTCCAAACTCCTCCA 58.943 55.000 0.00 0.00 36.28 3.86
2608 6080 3.895656 AGGTATAGGCGTCTGAAGCAATA 59.104 43.478 16.98 10.82 36.08 1.90
2800 6272 2.452600 TTGACTTGGCCAATATCCCC 57.547 50.000 20.85 5.39 0.00 4.81
2895 6367 2.978156 TCTCCCCATTGAACAGCTTT 57.022 45.000 0.00 0.00 0.00 3.51
2937 6409 5.246981 TGGTCTCATCAAAGGAGTCATTT 57.753 39.130 0.00 0.00 34.04 2.32
3004 6476 6.074648 TGCCTCCTTTCATCCTTTTTAAAGA 58.925 36.000 3.84 0.00 38.28 2.52
3502 6976 7.750458 CACAACATTATTGTACATGTCCTTGAC 59.250 37.037 0.00 0.00 34.06 3.18
3615 7090 4.081476 ACCAATGCAAAAAGATAAGGGCTC 60.081 41.667 0.00 0.00 0.00 4.70
3616 7091 3.840078 ACCAATGCAAAAAGATAAGGGCT 59.160 39.130 0.00 0.00 0.00 5.19
3617 7092 3.934579 CACCAATGCAAAAAGATAAGGGC 59.065 43.478 0.00 0.00 0.00 5.19
3618 7093 5.404466 TCACCAATGCAAAAAGATAAGGG 57.596 39.130 0.00 0.00 0.00 3.95
3619 7094 5.813672 CCATCACCAATGCAAAAAGATAAGG 59.186 40.000 0.00 0.00 33.71 2.69
3620 7095 6.632909 TCCATCACCAATGCAAAAAGATAAG 58.367 36.000 0.00 0.00 33.71 1.73
3621 7096 6.602410 TCCATCACCAATGCAAAAAGATAA 57.398 33.333 0.00 0.00 33.71 1.75
3622 7097 6.380560 TCATCCATCACCAATGCAAAAAGATA 59.619 34.615 0.00 0.00 33.71 1.98
3623 7098 5.188163 TCATCCATCACCAATGCAAAAAGAT 59.812 36.000 0.00 0.00 33.71 2.40
3624 7099 4.527427 TCATCCATCACCAATGCAAAAAGA 59.473 37.500 0.00 0.00 33.71 2.52
4021 7524 4.753107 CGTCCTGTAGAACTTGCCTTTTAA 59.247 41.667 0.00 0.00 0.00 1.52
4165 7668 2.800881 TCATCATTCCGGACTCGATG 57.199 50.000 22.46 22.46 39.00 3.84
4604 8107 5.542635 TCTGGTTTCTCCACTTAAAGCTAGA 59.457 40.000 0.00 0.00 41.93 2.43
4616 8119 3.454447 TGAGTTCAGTTCTGGTTTCTCCA 59.546 43.478 0.00 0.00 45.01 3.86
4622 8125 7.285401 ACAATGTAAATGAGTTCAGTTCTGGTT 59.715 33.333 0.00 0.00 35.62 3.67
4673 8176 9.284968 AGCCGTATTATACTATTTGAGCAAAAT 57.715 29.630 0.00 3.29 41.47 1.82
4725 8231 2.285776 CGACGTGCATACATGACAATGG 60.286 50.000 0.00 0.00 38.19 3.16
4728 8234 2.073117 ACGACGTGCATACATGACAA 57.927 45.000 0.00 0.00 36.58 3.18
4794 8319 1.464608 GGCGCGCATATATGACAATGT 59.535 47.619 34.42 0.00 0.00 2.71
4795 8320 1.527591 CGGCGCGCATATATGACAATG 60.528 52.381 34.42 1.48 0.00 2.82
4796 8321 0.721154 CGGCGCGCATATATGACAAT 59.279 50.000 34.42 0.00 0.00 2.71
4797 8322 0.598942 ACGGCGCGCATATATGACAA 60.599 50.000 34.42 0.00 0.00 3.18
4798 8323 0.241481 TACGGCGCGCATATATGACA 59.759 50.000 34.42 3.55 0.00 3.58
4799 8324 0.914551 CTACGGCGCGCATATATGAC 59.085 55.000 34.42 11.77 0.00 3.06
4800 8325 0.524414 ACTACGGCGCGCATATATGA 59.476 50.000 34.42 9.11 0.00 2.15
4801 8326 1.059122 CAACTACGGCGCGCATATATG 59.941 52.381 34.42 19.30 0.00 1.78
4802 8327 1.346365 CAACTACGGCGCGCATATAT 58.654 50.000 34.42 14.91 0.00 0.86
4803 8328 1.279527 GCAACTACGGCGCGCATATA 61.280 55.000 34.42 19.61 0.00 0.86
4804 8329 2.594962 GCAACTACGGCGCGCATAT 61.595 57.895 34.42 19.54 0.00 1.78
4805 8330 2.339100 TAGCAACTACGGCGCGCATA 62.339 55.000 34.42 22.59 36.08 3.14
4806 8331 3.709880 TAGCAACTACGGCGCGCAT 62.710 57.895 34.42 22.70 36.08 4.73
4807 8332 4.423022 TAGCAACTACGGCGCGCA 62.423 61.111 34.42 12.03 36.08 6.09
4808 8333 3.617538 CTAGCAACTACGGCGCGC 61.618 66.667 25.94 25.94 36.08 6.86
4809 8334 2.954868 CCTAGCAACTACGGCGCG 60.955 66.667 6.90 0.00 36.08 6.86
4810 8335 1.877165 GTCCTAGCAACTACGGCGC 60.877 63.158 6.90 0.00 36.08 6.53
4885 8421 4.564406 GCATCAGGGTCATATTCACCTAGG 60.564 50.000 7.41 7.41 33.96 3.02
4927 8463 1.476891 GCAGACTCGGAGGTGTGATTA 59.523 52.381 10.23 0.00 33.11 1.75
5033 8569 5.642919 ACATTCATTCAAGAGAGTTCTGCTC 59.357 40.000 0.00 0.00 44.45 4.26
5114 8651 4.413087 GCGGTATATCGGTAAGATCACAG 58.587 47.826 7.64 0.00 40.66 3.66
5126 8663 1.532437 TCTGTGTACCGCGGTATATCG 59.468 52.381 38.22 27.64 32.82 2.92
5157 8694 9.956720 CATGGATCATAACAGTAATTTCCTTTC 57.043 33.333 0.00 0.00 0.00 2.62
5166 8706 8.402798 ACAACAAACATGGATCATAACAGTAA 57.597 30.769 0.00 0.00 0.00 2.24
5171 8711 9.341899 GAAGTAACAACAAACATGGATCATAAC 57.658 33.333 0.00 0.00 0.00 1.89
5174 8714 7.523293 TGAAGTAACAACAAACATGGATCAT 57.477 32.000 0.00 0.00 0.00 2.45
5176 8716 6.363357 GCTTGAAGTAACAACAAACATGGATC 59.637 38.462 0.00 0.00 0.00 3.36
5180 8720 4.440758 CGGCTTGAAGTAACAACAAACATG 59.559 41.667 0.00 0.00 0.00 3.21
5181 8721 4.097286 ACGGCTTGAAGTAACAACAAACAT 59.903 37.500 0.00 0.00 0.00 2.71
5185 8725 4.156190 TCAAACGGCTTGAAGTAACAACAA 59.844 37.500 0.00 0.00 41.21 2.83
5186 8726 3.690139 TCAAACGGCTTGAAGTAACAACA 59.310 39.130 0.00 0.00 41.21 3.33
5202 8748 2.611974 GGCACCACAGTTATCAAACG 57.388 50.000 0.00 0.00 40.73 3.60
5220 8766 5.221303 CCATTAAATGCACTACTCAATGGGG 60.221 44.000 12.87 0.00 38.06 4.96
5223 8769 7.283127 AGGTACCATTAAATGCACTACTCAATG 59.717 37.037 15.94 0.00 0.00 2.82
5242 8791 3.649023 TGTAGGAAGAAAGCAAGGTACCA 59.351 43.478 15.94 0.00 0.00 3.25
5243 8792 4.254492 CTGTAGGAAGAAAGCAAGGTACC 58.746 47.826 2.73 2.73 0.00 3.34
5248 8797 4.938226 CCTAACCTGTAGGAAGAAAGCAAG 59.062 45.833 4.64 0.00 36.85 4.01
5253 8806 6.256643 ACAAACCTAACCTGTAGGAAGAAA 57.743 37.500 4.64 0.00 38.09 2.52
5289 8842 7.555195 TCCTTTATCGAACTGATCAGTACAGTA 59.445 37.037 28.10 15.70 46.01 2.74
5384 8937 7.607991 AGACTGTCAACAGAAGAAGAAGAAAAA 59.392 33.333 16.71 0.00 46.59 1.94
5420 8996 6.812160 ACAAGGTAAATGAGTTCAGATCGTAC 59.188 38.462 0.00 0.00 0.00 3.67
5458 9034 2.119457 GCGTTTTTCCTGCTGAAACAG 58.881 47.619 2.09 0.00 42.56 3.16
5522 9098 4.477975 CGTCCTCGGCGACCTCAC 62.478 72.222 4.99 0.00 0.00 3.51
5550 9126 3.072915 TGGACATCTGAGCTTCTTTTGGA 59.927 43.478 0.00 0.00 0.00 3.53
5651 9227 9.020731 ACTTCCAAAATAACGGTATCTTTCATT 57.979 29.630 0.00 0.00 0.00 2.57
5695 9271 1.559682 GAACAAGCCAGGGGATAGTGA 59.440 52.381 0.00 0.00 0.00 3.41
5857 9446 5.821995 TGTCTGTCATTCAATCTCAAACACA 59.178 36.000 0.00 0.00 0.00 3.72
5860 9449 7.020010 GTGATGTCTGTCATTCAATCTCAAAC 58.980 38.462 0.00 0.00 36.83 2.93
5870 9459 9.334693 GAAAATTGTTAGTGATGTCTGTCATTC 57.665 33.333 0.00 0.00 36.83 2.67
5872 9461 8.627208 AGAAAATTGTTAGTGATGTCTGTCAT 57.373 30.769 0.00 0.00 39.77 3.06
5875 9464 8.682936 AGAAGAAAATTGTTAGTGATGTCTGT 57.317 30.769 0.00 0.00 0.00 3.41
5921 9519 0.453793 AACCTCTCGAGATCACTGCG 59.546 55.000 17.03 1.82 0.00 5.18
5932 9530 4.024048 ACAAATAACAAGCACAACCTCTCG 60.024 41.667 0.00 0.00 0.00 4.04
5948 9546 7.550551 CCTGCAATCTCTCTACTTCACAAATAA 59.449 37.037 0.00 0.00 0.00 1.40
5951 9549 5.012046 TCCTGCAATCTCTCTACTTCACAAA 59.988 40.000 0.00 0.00 0.00 2.83
5952 9550 4.528206 TCCTGCAATCTCTCTACTTCACAA 59.472 41.667 0.00 0.00 0.00 3.33
5953 9551 4.081972 GTCCTGCAATCTCTCTACTTCACA 60.082 45.833 0.00 0.00 0.00 3.58
5954 9552 4.429108 GTCCTGCAATCTCTCTACTTCAC 58.571 47.826 0.00 0.00 0.00 3.18
5955 9553 3.449018 GGTCCTGCAATCTCTCTACTTCA 59.551 47.826 0.00 0.00 0.00 3.02
5956 9554 3.449018 TGGTCCTGCAATCTCTCTACTTC 59.551 47.826 0.00 0.00 0.00 3.01
5994 9606 4.697352 CAGTCATAAGCAAGCACTACCTTT 59.303 41.667 0.00 0.00 0.00 3.11
6011 9623 4.535294 AGGCATCCTAATATCTGCAGTCAT 59.465 41.667 14.67 3.11 36.34 3.06
6015 9627 4.082895 GCAAAGGCATCCTAATATCTGCAG 60.083 45.833 7.63 7.63 40.72 4.41
6023 9635 1.570501 TCAGGGCAAAGGCATCCTAAT 59.429 47.619 0.00 0.00 43.71 1.73
6191 9806 1.750778 AGCACCTTGTTTGACAACCAG 59.249 47.619 0.00 0.00 33.96 4.00
6192 9807 1.846007 AGCACCTTGTTTGACAACCA 58.154 45.000 0.00 0.00 33.96 3.67
6193 9808 2.959507 AAGCACCTTGTTTGACAACC 57.040 45.000 0.00 0.00 33.96 3.77
6195 9810 3.020274 TGCTAAGCACCTTGTTTGACAA 58.980 40.909 0.00 0.00 33.06 3.18
6196 9811 2.649190 TGCTAAGCACCTTGTTTGACA 58.351 42.857 0.00 0.00 31.71 3.58
6197 9812 3.923017 ATGCTAAGCACCTTGTTTGAC 57.077 42.857 0.00 0.00 43.04 3.18
6199 9814 4.455533 TGACTATGCTAAGCACCTTGTTTG 59.544 41.667 0.00 0.00 43.04 2.93
6201 9816 4.003648 GTGACTATGCTAAGCACCTTGTT 58.996 43.478 0.00 0.00 43.04 2.83
6202 9817 3.261897 AGTGACTATGCTAAGCACCTTGT 59.738 43.478 0.00 0.00 43.04 3.16
6203 9818 3.620374 CAGTGACTATGCTAAGCACCTTG 59.380 47.826 0.00 0.00 43.04 3.61
6204 9819 3.369892 CCAGTGACTATGCTAAGCACCTT 60.370 47.826 0.00 0.00 43.04 3.50
6213 9854 4.096984 GCATAAAAAGCCAGTGACTATGCT 59.903 41.667 5.05 3.26 37.97 3.79
6230 9871 6.231258 TGATATTGGGTTGCATTGCATAAA 57.769 33.333 12.95 5.35 38.76 1.40
6231 9872 5.866159 TGATATTGGGTTGCATTGCATAA 57.134 34.783 12.95 6.41 38.76 1.90
6232 9873 6.153170 CCTATGATATTGGGTTGCATTGCATA 59.847 38.462 12.95 0.81 38.76 3.14
6248 9889 8.938801 TTATGTCCACAAAATGCCTATGATAT 57.061 30.769 0.00 0.00 0.00 1.63
6249 9890 7.998383 ACTTATGTCCACAAAATGCCTATGATA 59.002 33.333 0.00 0.00 0.00 2.15
6256 9897 4.022416 TCACACTTATGTCCACAAAATGCC 60.022 41.667 0.00 0.00 36.72 4.40
6271 9912 9.665719 TTGATAAAACTCATGCTATCACACTTA 57.334 29.630 0.00 0.00 32.02 2.24
6274 9916 7.430502 GCTTTGATAAAACTCATGCTATCACAC 59.569 37.037 0.00 0.00 32.02 3.82
6277 9919 6.830324 AGGCTTTGATAAAACTCATGCTATCA 59.170 34.615 0.00 0.00 0.00 2.15
6305 9947 9.868277 ACATCACATGTTTTTCTTTCTTACAAA 57.132 25.926 0.00 0.00 41.63 2.83
6323 10003 5.477984 ACAAGGTGAAATGCTTACATCACAT 59.522 36.000 7.03 0.00 34.33 3.21
6329 10009 5.126222 TGTCAAACAAGGTGAAATGCTTACA 59.874 36.000 0.00 0.00 0.00 2.41
6369 10049 0.322008 GAAACAGCTGAGGGTGGGAG 60.322 60.000 23.35 0.00 44.34 4.30
6374 10054 2.373169 TGATGAAGAAACAGCTGAGGGT 59.627 45.455 23.35 1.38 0.00 4.34
6395 10075 4.323485 CCACCCATGTTACATCACAGTAGT 60.323 45.833 0.00 0.00 0.00 2.73
6396 10076 4.081142 TCCACCCATGTTACATCACAGTAG 60.081 45.833 0.00 0.00 0.00 2.57
6413 10093 3.922171 ATCTCTGTGAAATCTCCACCC 57.078 47.619 0.00 0.00 33.80 4.61
6416 10096 7.836685 AGAAGTAGTATCTCTGTGAAATCTCCA 59.163 37.037 0.00 0.00 0.00 3.86
6434 10115 9.863845 GTTCAGAGCTTAGAAAATAGAAGTAGT 57.136 33.333 3.68 0.00 0.00 2.73
6461 10142 2.361610 AACAAGGAGCCGCCCATG 60.362 61.111 1.37 2.06 37.37 3.66
6464 10145 2.034221 AAGAACAAGGAGCCGCCC 59.966 61.111 0.00 0.00 37.37 6.13
6465 10146 2.335712 CCAAGAACAAGGAGCCGCC 61.336 63.158 0.00 0.00 0.00 6.13
6466 10147 2.335712 CCCAAGAACAAGGAGCCGC 61.336 63.158 0.00 0.00 0.00 6.53
6467 10148 0.323629 TACCCAAGAACAAGGAGCCG 59.676 55.000 0.00 0.00 0.00 5.52
6468 10149 2.808906 ATACCCAAGAACAAGGAGCC 57.191 50.000 0.00 0.00 0.00 4.70
6484 10165 9.555727 TGATAACTTTACCTTTGGATGCTATAC 57.444 33.333 0.00 0.00 0.00 1.47
6486 10167 9.474313 TTTGATAACTTTACCTTTGGATGCTAT 57.526 29.630 0.00 0.00 0.00 2.97
6504 10185 3.785486 GCCTGGCCATTCTTTTGATAAC 58.215 45.455 5.51 0.00 0.00 1.89
6522 10203 2.578021 AGTACAGATGTTTGGATGGCCT 59.422 45.455 3.32 0.00 34.31 5.19
6557 10238 4.882427 AGAATCATCCTGTGAGCAAAGATG 59.118 41.667 0.00 0.00 40.92 2.90
6558 10239 5.113446 AGAATCATCCTGTGAGCAAAGAT 57.887 39.130 0.00 0.00 40.92 2.40
6565 10246 5.485620 TGAAGTGAAGAATCATCCTGTGAG 58.514 41.667 0.00 0.00 40.92 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.