Multiple sequence alignment - TraesCS7B01G431400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G431400 chr7B 100.000 2576 0 0 1 2576 699563526 699560951 0.000000e+00 4758.0
1 TraesCS7B01G431400 chr7B 98.972 681 7 0 1896 2576 29688362 29689042 0.000000e+00 1219.0
2 TraesCS7B01G431400 chr7B 96.211 607 12 4 1293 1898 699530705 699530109 0.000000e+00 983.0
3 TraesCS7B01G431400 chr7B 90.777 618 33 9 1003 1615 699354569 699355167 0.000000e+00 804.0
4 TraesCS7B01G431400 chr7B 89.423 624 42 11 968 1579 699524618 699524007 0.000000e+00 765.0
5 TraesCS7B01G431400 chr7B 84.699 647 54 23 704 1332 699361676 699362295 2.840000e-169 604.0
6 TraesCS7B01G431400 chr7B 82.500 160 22 2 1426 1579 699362302 699362461 4.470000e-28 135.0
7 TraesCS7B01G431400 chr7B 83.898 118 6 6 711 828 699354262 699354366 1.630000e-17 100.0
8 TraesCS7B01G431400 chr5B 99.413 682 3 1 1895 2576 158897121 158896441 0.000000e+00 1236.0
9 TraesCS7B01G431400 chr5B 82.313 147 25 1 486 631 697567283 697567429 2.690000e-25 126.0
10 TraesCS7B01G431400 chr7A 99.268 683 5 0 1894 2576 708293145 708293827 0.000000e+00 1234.0
11 TraesCS7B01G431400 chr7A 99.115 678 6 0 1899 2576 457567875 457567198 0.000000e+00 1219.0
12 TraesCS7B01G431400 chr7A 88.462 520 44 11 995 1509 700685334 700684826 4.710000e-172 614.0
13 TraesCS7B01G431400 chr7A 86.667 195 18 6 728 918 700685563 700685373 2.600000e-50 209.0
14 TraesCS7B01G431400 chr7A 82.877 146 23 2 486 630 507432804 507432948 2.080000e-26 130.0
15 TraesCS7B01G431400 chr7A 77.778 180 18 13 1525 1704 700684837 700684680 9.820000e-15 91.6
16 TraesCS7B01G431400 chr1B 99.408 676 4 0 1901 2576 167950680 167951355 0.000000e+00 1227.0
17 TraesCS7B01G431400 chr1B 82.517 143 25 0 489 631 178773632 178773490 2.690000e-25 126.0
18 TraesCS7B01G431400 chr5A 99.260 676 5 0 1901 2576 521678235 521677560 0.000000e+00 1221.0
19 TraesCS7B01G431400 chr5A 99.115 678 6 0 1899 2576 687716842 687717519 0.000000e+00 1219.0
20 TraesCS7B01G431400 chr2A 99.260 676 5 0 1901 2576 742798094 742797419 0.000000e+00 1221.0
21 TraesCS7B01G431400 chr2A 82.159 667 88 17 968 1615 602718685 602718031 6.270000e-151 544.0
22 TraesCS7B01G431400 chr2A 81.696 672 90 19 964 1615 602766745 602766087 1.760000e-146 529.0
23 TraesCS7B01G431400 chr2A 80.838 668 96 17 968 1615 602688788 602688133 1.780000e-136 496.0
24 TraesCS7B01G431400 chr2A 87.295 244 31 0 1 244 623738216 623738459 1.950000e-71 279.0
25 TraesCS7B01G431400 chr2A 86.161 224 31 0 6 229 182392631 182392854 2.560000e-60 243.0
26 TraesCS7B01G431400 chr2A 83.217 143 24 0 489 631 471729089 471728947 5.780000e-27 132.0
27 TraesCS7B01G431400 chr3B 99.114 677 6 0 1900 2576 706353997 706353321 0.000000e+00 1218.0
28 TraesCS7B01G431400 chr3B 85.417 144 19 2 489 631 373516199 373516057 5.740000e-32 148.0
29 TraesCS7B01G431400 chr3B 83.571 140 22 1 492 631 443354114 443354252 2.080000e-26 130.0
30 TraesCS7B01G431400 chr2B 83.133 664 84 15 968 1615 540813739 540813088 4.780000e-162 580.0
31 TraesCS7B01G431400 chr2B 89.416 274 28 1 1 274 768107507 768107779 6.820000e-91 344.0
32 TraesCS7B01G431400 chr2D 81.361 676 86 21 968 1615 459344028 459343365 4.920000e-142 514.0
33 TraesCS7B01G431400 chr7D 90.263 380 22 8 968 1335 610797423 610797047 1.390000e-132 483.0
34 TraesCS7B01G431400 chr7D 87.636 275 30 4 1 274 439070040 439070311 1.490000e-82 316.0
35 TraesCS7B01G431400 chr7D 85.766 274 39 0 1 274 638341052 638340779 9.020000e-75 291.0
36 TraesCS7B01G431400 chr7D 94.545 55 2 1 1611 1664 610796820 610796766 1.640000e-12 84.2
37 TraesCS7B01G431400 chr3D 84.727 275 38 4 1 274 377907192 377906921 3.270000e-69 272.0
38 TraesCS7B01G431400 chr3D 84.000 275 42 2 1 274 583151116 583150843 1.970000e-66 263.0
39 TraesCS7B01G431400 chr3D 84.028 144 21 2 489 631 11442709 11442567 1.240000e-28 137.0
40 TraesCS7B01G431400 chr6D 79.377 257 34 14 18 274 2284572 2284335 2.050000e-36 163.0
41 TraesCS7B01G431400 chr5D 82.639 144 25 0 489 632 345933887 345933744 7.480000e-26 128.0
42 TraesCS7B01G431400 chr3A 82.877 146 21 3 488 631 291805647 291805504 7.480000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G431400 chr7B 699560951 699563526 2575 True 4758.000000 4758 100.000000 1 2576 1 chr7B.!!$R3 2575
1 TraesCS7B01G431400 chr7B 29688362 29689042 680 False 1219.000000 1219 98.972000 1896 2576 1 chr7B.!!$F1 680
2 TraesCS7B01G431400 chr7B 699530109 699530705 596 True 983.000000 983 96.211000 1293 1898 1 chr7B.!!$R2 605
3 TraesCS7B01G431400 chr7B 699524007 699524618 611 True 765.000000 765 89.423000 968 1579 1 chr7B.!!$R1 611
4 TraesCS7B01G431400 chr7B 699354262 699355167 905 False 452.000000 804 87.337500 711 1615 2 chr7B.!!$F2 904
5 TraesCS7B01G431400 chr7B 699361676 699362461 785 False 369.500000 604 83.599500 704 1579 2 chr7B.!!$F3 875
6 TraesCS7B01G431400 chr5B 158896441 158897121 680 True 1236.000000 1236 99.413000 1895 2576 1 chr5B.!!$R1 681
7 TraesCS7B01G431400 chr7A 708293145 708293827 682 False 1234.000000 1234 99.268000 1894 2576 1 chr7A.!!$F2 682
8 TraesCS7B01G431400 chr7A 457567198 457567875 677 True 1219.000000 1219 99.115000 1899 2576 1 chr7A.!!$R1 677
9 TraesCS7B01G431400 chr7A 700684680 700685563 883 True 304.866667 614 84.302333 728 1704 3 chr7A.!!$R2 976
10 TraesCS7B01G431400 chr1B 167950680 167951355 675 False 1227.000000 1227 99.408000 1901 2576 1 chr1B.!!$F1 675
11 TraesCS7B01G431400 chr5A 521677560 521678235 675 True 1221.000000 1221 99.260000 1901 2576 1 chr5A.!!$R1 675
12 TraesCS7B01G431400 chr5A 687716842 687717519 677 False 1219.000000 1219 99.115000 1899 2576 1 chr5A.!!$F1 677
13 TraesCS7B01G431400 chr2A 742797419 742798094 675 True 1221.000000 1221 99.260000 1901 2576 1 chr2A.!!$R5 675
14 TraesCS7B01G431400 chr2A 602718031 602718685 654 True 544.000000 544 82.159000 968 1615 1 chr2A.!!$R3 647
15 TraesCS7B01G431400 chr2A 602766087 602766745 658 True 529.000000 529 81.696000 964 1615 1 chr2A.!!$R4 651
16 TraesCS7B01G431400 chr2A 602688133 602688788 655 True 496.000000 496 80.838000 968 1615 1 chr2A.!!$R2 647
17 TraesCS7B01G431400 chr3B 706353321 706353997 676 True 1218.000000 1218 99.114000 1900 2576 1 chr3B.!!$R2 676
18 TraesCS7B01G431400 chr2B 540813088 540813739 651 True 580.000000 580 83.133000 968 1615 1 chr2B.!!$R1 647
19 TraesCS7B01G431400 chr2D 459343365 459344028 663 True 514.000000 514 81.361000 968 1615 1 chr2D.!!$R1 647
20 TraesCS7B01G431400 chr7D 610796766 610797423 657 True 283.600000 483 92.404000 968 1664 2 chr7D.!!$R2 696

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 285 0.037419 GTTGCCCGCCATGAACATTT 60.037 50.0 0.0 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2247 1.152226 GAGGGGATGGATCGGAGGT 60.152 63.158 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.430921 CAGTCACCACCTCGCGAC 60.431 66.667 3.71 0.00 0.00 5.19
18 19 2.910479 AGTCACCACCTCGCGACA 60.910 61.111 3.71 0.00 0.00 4.35
19 20 2.733593 GTCACCACCTCGCGACAC 60.734 66.667 3.71 0.00 0.00 3.67
20 21 4.337060 TCACCACCTCGCGACACG 62.337 66.667 3.71 0.00 45.62 4.49
111 112 3.827898 CCCGGTGCTCCTCTCGAC 61.828 72.222 0.00 0.00 0.00 4.20
112 113 3.827898 CCGGTGCTCCTCTCGACC 61.828 72.222 2.85 0.00 0.00 4.79
113 114 3.827898 CGGTGCTCCTCTCGACCC 61.828 72.222 2.85 0.00 0.00 4.46
114 115 3.462678 GGTGCTCCTCTCGACCCC 61.463 72.222 0.00 0.00 0.00 4.95
115 116 3.827898 GTGCTCCTCTCGACCCCG 61.828 72.222 0.00 0.00 37.07 5.73
118 119 3.522731 CTCCTCTCGACCCCGCTG 61.523 72.222 0.00 0.00 35.37 5.18
119 120 4.361971 TCCTCTCGACCCCGCTGT 62.362 66.667 0.00 0.00 35.37 4.40
120 121 3.827898 CCTCTCGACCCCGCTGTC 61.828 72.222 0.00 0.00 35.37 3.51
121 122 3.827898 CTCTCGACCCCGCTGTCC 61.828 72.222 0.00 0.00 35.37 4.02
139 140 4.139420 CGCGCCAGCAAAGACGAG 62.139 66.667 0.00 0.00 45.49 4.18
140 141 2.738521 GCGCCAGCAAAGACGAGA 60.739 61.111 0.00 0.00 44.35 4.04
141 142 2.317609 GCGCCAGCAAAGACGAGAA 61.318 57.895 0.00 0.00 44.35 2.87
142 143 1.784062 CGCCAGCAAAGACGAGAAG 59.216 57.895 0.00 0.00 0.00 2.85
143 144 1.630244 CGCCAGCAAAGACGAGAAGG 61.630 60.000 0.00 0.00 0.00 3.46
144 145 0.320771 GCCAGCAAAGACGAGAAGGA 60.321 55.000 0.00 0.00 0.00 3.36
145 146 1.677217 GCCAGCAAAGACGAGAAGGAT 60.677 52.381 0.00 0.00 0.00 3.24
146 147 2.005451 CCAGCAAAGACGAGAAGGATG 58.995 52.381 0.00 0.00 0.00 3.51
147 148 2.005451 CAGCAAAGACGAGAAGGATGG 58.995 52.381 0.00 0.00 0.00 3.51
148 149 1.065854 AGCAAAGACGAGAAGGATGGG 60.066 52.381 0.00 0.00 0.00 4.00
149 150 2.014068 GCAAAGACGAGAAGGATGGGG 61.014 57.143 0.00 0.00 0.00 4.96
150 151 1.555075 CAAAGACGAGAAGGATGGGGA 59.445 52.381 0.00 0.00 0.00 4.81
151 152 1.490574 AAGACGAGAAGGATGGGGAG 58.509 55.000 0.00 0.00 0.00 4.30
152 153 0.631753 AGACGAGAAGGATGGGGAGA 59.368 55.000 0.00 0.00 0.00 3.71
153 154 1.007238 AGACGAGAAGGATGGGGAGAA 59.993 52.381 0.00 0.00 0.00 2.87
154 155 1.410882 GACGAGAAGGATGGGGAGAAG 59.589 57.143 0.00 0.00 0.00 2.85
155 156 0.105778 CGAGAAGGATGGGGAGAAGC 59.894 60.000 0.00 0.00 0.00 3.86
156 157 0.472044 GAGAAGGATGGGGAGAAGCC 59.528 60.000 0.00 0.00 0.00 4.35
206 207 4.752879 GCGGCACTACGGAAGGCA 62.753 66.667 0.00 0.00 0.00 4.75
207 208 2.509336 CGGCACTACGGAAGGCAG 60.509 66.667 0.00 0.00 0.00 4.85
208 209 2.820037 GGCACTACGGAAGGCAGC 60.820 66.667 0.00 0.00 0.00 5.25
209 210 3.188786 GCACTACGGAAGGCAGCG 61.189 66.667 0.00 0.00 0.00 5.18
210 211 2.571757 CACTACGGAAGGCAGCGA 59.428 61.111 0.00 0.00 0.00 4.93
211 212 1.517257 CACTACGGAAGGCAGCGAG 60.517 63.158 0.00 0.00 0.00 5.03
212 213 2.105128 CTACGGAAGGCAGCGAGG 59.895 66.667 0.00 0.00 0.00 4.63
213 214 2.361992 TACGGAAGGCAGCGAGGA 60.362 61.111 0.00 0.00 0.00 3.71
214 215 2.343163 CTACGGAAGGCAGCGAGGAG 62.343 65.000 0.00 0.00 0.00 3.69
215 216 4.521062 CGGAAGGCAGCGAGGAGG 62.521 72.222 0.00 0.00 0.00 4.30
216 217 4.168291 GGAAGGCAGCGAGGAGGG 62.168 72.222 0.00 0.00 0.00 4.30
217 218 3.077556 GAAGGCAGCGAGGAGGGA 61.078 66.667 0.00 0.00 0.00 4.20
218 219 3.080121 AAGGCAGCGAGGAGGGAG 61.080 66.667 0.00 0.00 0.00 4.30
219 220 3.608759 AAGGCAGCGAGGAGGGAGA 62.609 63.158 0.00 0.00 0.00 3.71
220 221 3.535962 GGCAGCGAGGAGGGAGAG 61.536 72.222 0.00 0.00 0.00 3.20
221 222 2.441164 GCAGCGAGGAGGGAGAGA 60.441 66.667 0.00 0.00 0.00 3.10
222 223 2.489275 GCAGCGAGGAGGGAGAGAG 61.489 68.421 0.00 0.00 0.00 3.20
223 224 1.827789 CAGCGAGGAGGGAGAGAGG 60.828 68.421 0.00 0.00 0.00 3.69
224 225 3.223589 GCGAGGAGGGAGAGAGGC 61.224 72.222 0.00 0.00 0.00 4.70
225 226 2.904866 CGAGGAGGGAGAGAGGCG 60.905 72.222 0.00 0.00 0.00 5.52
226 227 2.520741 GAGGAGGGAGAGAGGCGG 60.521 72.222 0.00 0.00 0.00 6.13
227 228 3.024356 AGGAGGGAGAGAGGCGGA 61.024 66.667 0.00 0.00 0.00 5.54
228 229 2.520741 GGAGGGAGAGAGGCGGAG 60.521 72.222 0.00 0.00 0.00 4.63
229 230 2.598467 GAGGGAGAGAGGCGGAGA 59.402 66.667 0.00 0.00 0.00 3.71
230 231 1.076632 GAGGGAGAGAGGCGGAGAA 60.077 63.158 0.00 0.00 0.00 2.87
231 232 1.076339 AGGGAGAGAGGCGGAGAAG 60.076 63.158 0.00 0.00 0.00 2.85
232 233 2.131067 GGGAGAGAGGCGGAGAAGG 61.131 68.421 0.00 0.00 0.00 3.46
233 234 1.380650 GGAGAGAGGCGGAGAAGGT 60.381 63.158 0.00 0.00 0.00 3.50
234 235 1.671901 GGAGAGAGGCGGAGAAGGTG 61.672 65.000 0.00 0.00 0.00 4.00
235 236 2.185608 GAGAGGCGGAGAAGGTGC 59.814 66.667 0.00 0.00 0.00 5.01
236 237 3.708220 GAGAGGCGGAGAAGGTGCG 62.708 68.421 0.00 0.00 44.19 5.34
237 238 3.760035 GAGGCGGAGAAGGTGCGA 61.760 66.667 0.00 0.00 44.08 5.10
238 239 3.708220 GAGGCGGAGAAGGTGCGAG 62.708 68.421 0.00 0.00 44.08 5.03
239 240 3.760035 GGCGGAGAAGGTGCGAGA 61.760 66.667 0.00 0.00 44.08 4.04
240 241 2.261671 GCGGAGAAGGTGCGAGAA 59.738 61.111 0.00 0.00 44.08 2.87
241 242 1.807573 GCGGAGAAGGTGCGAGAAG 60.808 63.158 0.00 0.00 44.08 2.85
242 243 1.807573 CGGAGAAGGTGCGAGAAGC 60.808 63.158 0.00 0.00 44.08 3.86
252 253 3.243855 GCGAGAAGCGAAGTCTAGG 57.756 57.895 0.00 0.00 44.57 3.02
253 254 0.248702 GCGAGAAGCGAAGTCTAGGG 60.249 60.000 0.00 0.00 44.57 3.53
254 255 1.096416 CGAGAAGCGAAGTCTAGGGT 58.904 55.000 0.00 0.00 44.57 4.34
255 256 1.473278 CGAGAAGCGAAGTCTAGGGTT 59.527 52.381 0.00 0.00 44.57 4.11
256 257 2.094649 CGAGAAGCGAAGTCTAGGGTTT 60.095 50.000 0.00 0.00 44.57 3.27
257 258 3.513662 GAGAAGCGAAGTCTAGGGTTTC 58.486 50.000 0.00 0.00 0.00 2.78
258 259 2.234168 AGAAGCGAAGTCTAGGGTTTCC 59.766 50.000 0.00 0.00 0.00 3.13
259 260 0.903236 AGCGAAGTCTAGGGTTTCCC 59.097 55.000 0.00 0.00 45.90 3.97
280 281 3.758931 GGGTTGCCCGCCATGAAC 61.759 66.667 0.00 0.00 32.13 3.18
281 282 2.988684 GGTTGCCCGCCATGAACA 60.989 61.111 0.00 0.00 0.00 3.18
282 283 2.350458 GGTTGCCCGCCATGAACAT 61.350 57.895 0.00 0.00 0.00 2.71
283 284 1.591183 GTTGCCCGCCATGAACATT 59.409 52.632 0.00 0.00 0.00 2.71
284 285 0.037419 GTTGCCCGCCATGAACATTT 60.037 50.000 0.00 0.00 0.00 2.32
285 286 0.683973 TTGCCCGCCATGAACATTTT 59.316 45.000 0.00 0.00 0.00 1.82
286 287 1.550327 TGCCCGCCATGAACATTTTA 58.450 45.000 0.00 0.00 0.00 1.52
287 288 1.203523 TGCCCGCCATGAACATTTTAC 59.796 47.619 0.00 0.00 0.00 2.01
288 289 1.797348 GCCCGCCATGAACATTTTACG 60.797 52.381 0.00 0.00 0.00 3.18
289 290 1.470890 CCCGCCATGAACATTTTACGT 59.529 47.619 0.00 0.00 0.00 3.57
290 291 2.094957 CCCGCCATGAACATTTTACGTT 60.095 45.455 0.00 0.00 0.00 3.99
291 292 3.570559 CCGCCATGAACATTTTACGTTT 58.429 40.909 0.00 0.00 0.00 3.60
292 293 3.984633 CCGCCATGAACATTTTACGTTTT 59.015 39.130 0.00 0.00 0.00 2.43
293 294 4.446051 CCGCCATGAACATTTTACGTTTTT 59.554 37.500 0.00 0.00 0.00 1.94
294 295 5.387958 CCGCCATGAACATTTTACGTTTTTC 60.388 40.000 0.00 0.00 0.00 2.29
295 296 5.401079 CGCCATGAACATTTTACGTTTTTCT 59.599 36.000 0.00 0.00 0.00 2.52
296 297 6.579292 CGCCATGAACATTTTACGTTTTTCTA 59.421 34.615 0.00 0.00 0.00 2.10
297 298 7.272515 CGCCATGAACATTTTACGTTTTTCTAT 59.727 33.333 0.00 0.00 0.00 1.98
298 299 9.562583 GCCATGAACATTTTACGTTTTTCTATA 57.437 29.630 0.00 0.00 0.00 1.31
354 355 8.938047 AAATTCATGAACATTTTTGATTTCGC 57.062 26.923 11.07 0.00 0.00 4.70
355 356 7.894376 ATTCATGAACATTTTTGATTTCGCT 57.106 28.000 11.07 0.00 0.00 4.93
356 357 8.984891 ATTCATGAACATTTTTGATTTCGCTA 57.015 26.923 11.07 0.00 0.00 4.26
357 358 8.809159 TTCATGAACATTTTTGATTTCGCTAA 57.191 26.923 3.38 0.00 0.00 3.09
358 359 8.984891 TCATGAACATTTTTGATTTCGCTAAT 57.015 26.923 0.00 0.00 0.00 1.73
359 360 8.862074 TCATGAACATTTTTGATTTCGCTAATG 58.138 29.630 0.00 0.00 0.00 1.90
360 361 8.649841 CATGAACATTTTTGATTTCGCTAATGT 58.350 29.630 0.00 0.00 37.70 2.71
361 362 8.586570 TGAACATTTTTGATTTCGCTAATGTT 57.413 26.923 9.88 9.88 44.35 2.71
362 363 9.039870 TGAACATTTTTGATTTCGCTAATGTTT 57.960 25.926 11.02 0.00 42.76 2.83
363 364 9.862585 GAACATTTTTGATTTCGCTAATGTTTT 57.137 25.926 11.02 0.00 42.76 2.43
364 365 9.862585 AACATTTTTGATTTCGCTAATGTTTTC 57.137 25.926 0.00 0.00 41.03 2.29
365 366 8.495148 ACATTTTTGATTTCGCTAATGTTTTCC 58.505 29.630 0.00 0.00 33.73 3.13
366 367 8.494347 CATTTTTGATTTCGCTAATGTTTTCCA 58.506 29.630 0.00 0.00 0.00 3.53
367 368 8.600449 TTTTTGATTTCGCTAATGTTTTCCAT 57.400 26.923 0.00 0.00 34.36 3.41
368 369 7.579589 TTTGATTTCGCTAATGTTTTCCATG 57.420 32.000 0.00 0.00 32.82 3.66
369 370 5.101628 TGATTTCGCTAATGTTTTCCATGC 58.898 37.500 0.00 0.00 32.82 4.06
370 371 4.511617 TTTCGCTAATGTTTTCCATGCA 57.488 36.364 0.00 0.00 32.82 3.96
371 372 4.717233 TTCGCTAATGTTTTCCATGCAT 57.283 36.364 0.00 0.00 32.82 3.96
372 373 4.031418 TCGCTAATGTTTTCCATGCATG 57.969 40.909 20.19 20.19 32.82 4.06
373 374 3.443329 TCGCTAATGTTTTCCATGCATGT 59.557 39.130 24.58 6.67 32.82 3.21
374 375 3.548668 CGCTAATGTTTTCCATGCATGTG 59.451 43.478 24.58 15.94 32.82 3.21
375 376 3.307782 GCTAATGTTTTCCATGCATGTGC 59.692 43.478 24.58 10.33 42.50 4.57
376 377 2.389962 ATGTTTTCCATGCATGTGCC 57.610 45.000 24.58 8.69 41.18 5.01
377 378 1.046204 TGTTTTCCATGCATGTGCCA 58.954 45.000 24.58 11.02 41.18 4.92
378 379 1.624312 TGTTTTCCATGCATGTGCCAT 59.376 42.857 24.58 0.00 41.18 4.40
379 380 2.273557 GTTTTCCATGCATGTGCCATC 58.726 47.619 24.58 7.46 41.18 3.51
380 381 0.456628 TTTCCATGCATGTGCCATCG 59.543 50.000 24.58 8.13 41.18 3.84
381 382 0.680601 TTCCATGCATGTGCCATCGT 60.681 50.000 24.58 0.00 41.18 3.73
382 383 1.065109 CCATGCATGTGCCATCGTG 59.935 57.895 24.58 2.77 41.18 4.35
383 384 1.378124 CCATGCATGTGCCATCGTGA 61.378 55.000 24.58 0.00 41.18 4.35
384 385 0.248336 CATGCATGTGCCATCGTGAC 60.248 55.000 18.91 0.00 41.18 3.67
385 386 1.378882 ATGCATGTGCCATCGTGACC 61.379 55.000 0.00 0.00 41.18 4.02
386 387 3.092403 CATGTGCCATCGTGACCG 58.908 61.111 0.00 0.00 0.00 4.79
398 399 3.612472 TCGTGACCGAAAATGTTTTCC 57.388 42.857 11.45 0.87 42.66 3.13
399 400 2.943690 TCGTGACCGAAAATGTTTTCCA 59.056 40.909 11.45 3.09 42.66 3.53
400 401 3.566322 TCGTGACCGAAAATGTTTTCCAT 59.434 39.130 11.45 1.75 42.66 3.41
401 402 3.668191 CGTGACCGAAAATGTTTTCCATG 59.332 43.478 11.45 6.68 42.66 3.66
402 403 3.428534 GTGACCGAAAATGTTTTCCATGC 59.571 43.478 11.45 2.02 42.66 4.06
403 404 3.068732 TGACCGAAAATGTTTTCCATGCA 59.931 39.130 11.45 0.00 42.66 3.96
404 405 4.244862 GACCGAAAATGTTTTCCATGCAT 58.755 39.130 11.45 0.00 42.66 3.96
405 406 4.640364 ACCGAAAATGTTTTCCATGCATT 58.360 34.783 11.45 0.00 42.66 3.56
406 407 5.062528 ACCGAAAATGTTTTCCATGCATTT 58.937 33.333 11.45 3.29 42.66 2.32
407 408 6.226787 ACCGAAAATGTTTTCCATGCATTTA 58.773 32.000 11.45 0.00 42.66 1.40
408 409 6.708054 ACCGAAAATGTTTTCCATGCATTTAA 59.292 30.769 11.45 0.00 42.66 1.52
409 410 7.227512 ACCGAAAATGTTTTCCATGCATTTAAA 59.772 29.630 11.45 0.00 42.66 1.52
410 411 8.072567 CCGAAAATGTTTTCCATGCATTTAAAA 58.927 29.630 11.45 4.11 42.66 1.52
411 412 9.609950 CGAAAATGTTTTCCATGCATTTAAAAT 57.390 25.926 15.43 3.73 42.66 1.82
417 418 8.021973 TGTTTTCCATGCATTTAAAATTCATGC 58.978 29.630 15.43 11.14 43.13 4.06
418 419 5.970140 TCCATGCATTTAAAATTCATGCG 57.030 34.783 16.08 11.89 45.33 4.73
419 420 5.417811 TCCATGCATTTAAAATTCATGCGT 58.582 33.333 16.08 9.66 45.33 5.24
422 423 5.512573 TGCATTTAAAATTCATGCGTGTG 57.487 34.783 5.68 0.00 45.33 3.82
423 424 4.143158 TGCATTTAAAATTCATGCGTGTGC 60.143 37.500 5.68 5.66 45.33 4.57
424 425 4.724602 GCATTTAAAATTCATGCGTGTGCC 60.725 41.667 5.68 0.00 41.78 5.01
425 426 3.932545 TTAAAATTCATGCGTGTGCCT 57.067 38.095 5.68 0.00 41.78 4.75
426 427 2.818130 AAAATTCATGCGTGTGCCTT 57.182 40.000 5.68 0.00 41.78 4.35
427 428 2.068837 AAATTCATGCGTGTGCCTTG 57.931 45.000 5.68 0.00 41.78 3.61
428 429 0.961019 AATTCATGCGTGTGCCTTGT 59.039 45.000 5.68 0.00 41.78 3.16
429 430 0.241749 ATTCATGCGTGTGCCTTGTG 59.758 50.000 5.68 0.00 41.78 3.33
430 431 0.817229 TTCATGCGTGTGCCTTGTGA 60.817 50.000 5.68 0.00 41.78 3.58
431 432 1.081906 CATGCGTGTGCCTTGTGAC 60.082 57.895 0.00 0.00 41.78 3.67
432 433 2.260869 ATGCGTGTGCCTTGTGACC 61.261 57.895 0.00 0.00 41.78 4.02
433 434 2.591715 GCGTGTGCCTTGTGACCT 60.592 61.111 0.00 0.00 33.98 3.85
434 435 1.301401 GCGTGTGCCTTGTGACCTA 60.301 57.895 0.00 0.00 33.98 3.08
435 436 0.882927 GCGTGTGCCTTGTGACCTAA 60.883 55.000 0.00 0.00 33.98 2.69
436 437 1.588674 CGTGTGCCTTGTGACCTAAA 58.411 50.000 0.00 0.00 0.00 1.85
437 438 1.944024 CGTGTGCCTTGTGACCTAAAA 59.056 47.619 0.00 0.00 0.00 1.52
438 439 2.552315 CGTGTGCCTTGTGACCTAAAAT 59.448 45.455 0.00 0.00 0.00 1.82
439 440 3.749088 CGTGTGCCTTGTGACCTAAAATA 59.251 43.478 0.00 0.00 0.00 1.40
440 441 4.394920 CGTGTGCCTTGTGACCTAAAATAT 59.605 41.667 0.00 0.00 0.00 1.28
441 442 5.583061 CGTGTGCCTTGTGACCTAAAATATA 59.417 40.000 0.00 0.00 0.00 0.86
442 443 6.092944 CGTGTGCCTTGTGACCTAAAATATAA 59.907 38.462 0.00 0.00 0.00 0.98
443 444 7.201696 CGTGTGCCTTGTGACCTAAAATATAAT 60.202 37.037 0.00 0.00 0.00 1.28
444 445 9.116067 GTGTGCCTTGTGACCTAAAATATAATA 57.884 33.333 0.00 0.00 0.00 0.98
445 446 9.116067 TGTGCCTTGTGACCTAAAATATAATAC 57.884 33.333 0.00 0.00 0.00 1.89
446 447 9.116067 GTGCCTTGTGACCTAAAATATAATACA 57.884 33.333 0.00 0.00 0.00 2.29
447 448 9.688091 TGCCTTGTGACCTAAAATATAATACAA 57.312 29.630 0.00 0.00 0.00 2.41
448 449 9.946165 GCCTTGTGACCTAAAATATAATACAAC 57.054 33.333 0.00 0.00 0.00 3.32
467 468 9.750125 AATACAACATTTGAAAAGAGAGTTTCC 57.250 29.630 0.00 0.00 36.80 3.13
468 469 7.169158 ACAACATTTGAAAAGAGAGTTTCCA 57.831 32.000 0.00 0.00 36.80 3.53
469 470 7.785033 ACAACATTTGAAAAGAGAGTTTCCAT 58.215 30.769 0.00 0.00 36.80 3.41
470 471 7.707893 ACAACATTTGAAAAGAGAGTTTCCATG 59.292 33.333 0.00 0.00 36.80 3.66
471 472 7.352079 ACATTTGAAAAGAGAGTTTCCATGT 57.648 32.000 0.00 6.71 36.50 3.21
472 473 8.463930 ACATTTGAAAAGAGAGTTTCCATGTA 57.536 30.769 9.28 0.00 37.96 2.29
473 474 9.082313 ACATTTGAAAAGAGAGTTTCCATGTAT 57.918 29.630 9.28 0.00 37.96 2.29
474 475 9.350357 CATTTGAAAAGAGAGTTTCCATGTATG 57.650 33.333 0.00 0.00 36.80 2.39
475 476 8.690203 TTTGAAAAGAGAGTTTCCATGTATGA 57.310 30.769 0.00 0.00 36.80 2.15
476 477 8.868522 TTGAAAAGAGAGTTTCCATGTATGAT 57.131 30.769 0.00 0.00 36.80 2.45
477 478 8.868522 TGAAAAGAGAGTTTCCATGTATGATT 57.131 30.769 0.00 0.00 36.80 2.57
478 479 8.950210 TGAAAAGAGAGTTTCCATGTATGATTC 58.050 33.333 0.00 0.00 36.80 2.52
479 480 7.872113 AAAGAGAGTTTCCATGTATGATTCC 57.128 36.000 0.00 0.00 0.00 3.01
480 481 6.821616 AGAGAGTTTCCATGTATGATTCCT 57.178 37.500 0.00 0.00 0.00 3.36
481 482 7.921041 AGAGAGTTTCCATGTATGATTCCTA 57.079 36.000 0.00 0.00 0.00 2.94
482 483 8.324191 AGAGAGTTTCCATGTATGATTCCTAA 57.676 34.615 0.00 0.00 0.00 2.69
483 484 8.943085 AGAGAGTTTCCATGTATGATTCCTAAT 58.057 33.333 0.00 0.00 0.00 1.73
484 485 9.566432 GAGAGTTTCCATGTATGATTCCTAATT 57.434 33.333 0.00 0.00 0.00 1.40
485 486 9.927081 AGAGTTTCCATGTATGATTCCTAATTT 57.073 29.630 0.00 0.00 0.00 1.82
512 513 9.991906 TTTACTCCATCGGTTCCTAAATATAAG 57.008 33.333 0.00 0.00 0.00 1.73
513 514 7.613551 ACTCCATCGGTTCCTAAATATAAGT 57.386 36.000 0.00 0.00 0.00 2.24
514 515 7.668492 ACTCCATCGGTTCCTAAATATAAGTC 58.332 38.462 0.00 0.00 0.00 3.01
515 516 7.509659 ACTCCATCGGTTCCTAAATATAAGTCT 59.490 37.037 0.00 0.00 0.00 3.24
516 517 8.258850 TCCATCGGTTCCTAAATATAAGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
517 518 8.711170 TCCATCGGTTCCTAAATATAAGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
518 519 9.338622 CCATCGGTTCCTAAATATAAGTCTTTT 57.661 33.333 0.00 0.00 0.00 2.27
536 537 8.561738 AGTCTTTTTATAGATTTCAAAGCGGA 57.438 30.769 0.00 0.00 0.00 5.54
537 538 8.451748 AGTCTTTTTATAGATTTCAAAGCGGAC 58.548 33.333 0.00 0.00 0.00 4.79
538 539 8.451748 GTCTTTTTATAGATTTCAAAGCGGACT 58.548 33.333 0.00 0.00 0.00 3.85
539 540 9.661563 TCTTTTTATAGATTTCAAAGCGGACTA 57.338 29.630 0.00 0.00 0.00 2.59
540 541 9.704098 CTTTTTATAGATTTCAAAGCGGACTAC 57.296 33.333 0.00 0.00 0.00 2.73
541 542 8.780846 TTTTATAGATTTCAAAGCGGACTACA 57.219 30.769 0.00 0.00 0.00 2.74
542 543 8.958119 TTTATAGATTTCAAAGCGGACTACAT 57.042 30.769 0.00 0.00 0.00 2.29
544 545 7.948278 ATAGATTTCAAAGCGGACTACATAC 57.052 36.000 0.00 0.00 0.00 2.39
545 546 5.730550 AGATTTCAAAGCGGACTACATACA 58.269 37.500 0.00 0.00 0.00 2.29
546 547 6.170506 AGATTTCAAAGCGGACTACATACAA 58.829 36.000 0.00 0.00 0.00 2.41
547 548 6.823689 AGATTTCAAAGCGGACTACATACAAT 59.176 34.615 0.00 0.00 0.00 2.71
548 549 6.811253 TTTCAAAGCGGACTACATACAATT 57.189 33.333 0.00 0.00 0.00 2.32
549 550 5.794687 TCAAAGCGGACTACATACAATTG 57.205 39.130 3.24 3.24 0.00 2.32
550 551 5.242434 TCAAAGCGGACTACATACAATTGT 58.758 37.500 16.68 16.68 0.00 2.71
551 552 6.399743 TCAAAGCGGACTACATACAATTGTA 58.600 36.000 20.14 20.14 34.67 2.41
552 553 7.045416 TCAAAGCGGACTACATACAATTGTAT 58.955 34.615 22.70 22.70 41.58 2.29
553 554 8.198778 TCAAAGCGGACTACATACAATTGTATA 58.801 33.333 26.59 14.15 39.06 1.47
554 555 8.988934 CAAAGCGGACTACATACAATTGTATAT 58.011 33.333 26.59 20.28 39.06 0.86
556 557 9.856488 AAGCGGACTACATACAATTGTATATAG 57.144 33.333 29.72 29.72 41.42 1.31
557 558 9.239551 AGCGGACTACATACAATTGTATATAGA 57.760 33.333 34.64 19.07 39.26 1.98
558 559 9.286946 GCGGACTACATACAATTGTATATAGAC 57.713 37.037 34.64 29.87 39.26 2.59
559 560 9.486857 CGGACTACATACAATTGTATATAGACG 57.513 37.037 34.64 31.30 39.26 4.18
605 606 9.832445 ATTCATTTTACTTCATATGTAGTCCGT 57.168 29.630 17.20 2.01 0.00 4.69
607 608 9.961265 TCATTTTACTTCATATGTAGTCCGTAG 57.039 33.333 17.20 7.72 0.00 3.51
608 609 9.745880 CATTTTACTTCATATGTAGTCCGTAGT 57.254 33.333 17.20 5.41 0.00 2.73
614 615 9.962783 ACTTCATATGTAGTCCGTAGTAAATTC 57.037 33.333 9.03 0.00 0.00 2.17
617 618 9.570468 TCATATGTAGTCCGTAGTAAATTCTCT 57.430 33.333 1.90 0.00 0.00 3.10
620 621 7.692460 TGTAGTCCGTAGTAAATTCTCTTGA 57.308 36.000 0.00 0.00 0.00 3.02
621 622 8.114331 TGTAGTCCGTAGTAAATTCTCTTGAA 57.886 34.615 0.00 0.00 36.54 2.69
622 623 8.579006 TGTAGTCCGTAGTAAATTCTCTTGAAA 58.421 33.333 0.00 0.00 35.63 2.69
623 624 9.074443 GTAGTCCGTAGTAAATTCTCTTGAAAG 57.926 37.037 0.00 0.00 35.63 2.62
624 625 7.893658 AGTCCGTAGTAAATTCTCTTGAAAGA 58.106 34.615 0.00 0.00 35.63 2.52
625 626 7.813627 AGTCCGTAGTAAATTCTCTTGAAAGAC 59.186 37.037 0.00 0.00 35.63 3.01
626 627 7.813627 GTCCGTAGTAAATTCTCTTGAAAGACT 59.186 37.037 0.00 0.00 35.63 3.24
627 628 8.365647 TCCGTAGTAAATTCTCTTGAAAGACTT 58.634 33.333 0.00 0.00 35.63 3.01
628 629 9.635520 CCGTAGTAAATTCTCTTGAAAGACTTA 57.364 33.333 0.00 0.00 35.63 2.24
635 636 8.934507 AATTCTCTTGAAAGACTTATACGGAG 57.065 34.615 0.00 0.00 35.63 4.63
636 637 8.068892 ATTCTCTTGAAAGACTTATACGGAGT 57.931 34.615 0.00 0.00 39.31 3.85
637 638 9.186837 ATTCTCTTGAAAGACTTATACGGAGTA 57.813 33.333 0.00 0.00 40.91 2.59
655 656 7.893658 ACGGAGTATTTAGAAACAGAGAAAGA 58.106 34.615 0.00 0.00 41.94 2.52
656 657 8.030106 ACGGAGTATTTAGAAACAGAGAAAGAG 58.970 37.037 0.00 0.00 41.94 2.85
657 658 8.030106 CGGAGTATTTAGAAACAGAGAAAGAGT 58.970 37.037 0.00 0.00 0.00 3.24
663 664 8.764524 TTTAGAAACAGAGAAAGAGTAGATGC 57.235 34.615 0.00 0.00 0.00 3.91
664 665 5.729510 AGAAACAGAGAAAGAGTAGATGCC 58.270 41.667 0.00 0.00 0.00 4.40
665 666 5.247110 AGAAACAGAGAAAGAGTAGATGCCA 59.753 40.000 0.00 0.00 0.00 4.92
666 667 5.489792 AACAGAGAAAGAGTAGATGCCAA 57.510 39.130 0.00 0.00 0.00 4.52
667 668 5.083533 ACAGAGAAAGAGTAGATGCCAAG 57.916 43.478 0.00 0.00 0.00 3.61
668 669 3.870419 CAGAGAAAGAGTAGATGCCAAGC 59.130 47.826 0.00 0.00 0.00 4.01
669 670 3.774216 AGAGAAAGAGTAGATGCCAAGCT 59.226 43.478 0.00 0.00 0.00 3.74
670 671 4.959210 AGAGAAAGAGTAGATGCCAAGCTA 59.041 41.667 0.00 0.00 0.00 3.32
671 672 5.602145 AGAGAAAGAGTAGATGCCAAGCTAT 59.398 40.000 0.00 0.00 0.00 2.97
672 673 5.852827 AGAAAGAGTAGATGCCAAGCTATC 58.147 41.667 0.00 0.00 0.00 2.08
673 674 5.365025 AGAAAGAGTAGATGCCAAGCTATCA 59.635 40.000 0.00 0.00 0.00 2.15
674 675 5.822132 AAGAGTAGATGCCAAGCTATCAT 57.178 39.130 0.00 0.00 0.00 2.45
675 676 5.404466 AGAGTAGATGCCAAGCTATCATC 57.596 43.478 12.31 12.31 37.46 2.92
676 677 4.837298 AGAGTAGATGCCAAGCTATCATCA 59.163 41.667 18.80 7.61 39.12 3.07
677 678 4.892433 AGTAGATGCCAAGCTATCATCAC 58.108 43.478 18.80 15.13 39.12 3.06
678 679 3.851458 AGATGCCAAGCTATCATCACA 57.149 42.857 18.80 0.34 39.12 3.58
679 680 4.368565 AGATGCCAAGCTATCATCACAT 57.631 40.909 18.80 4.45 39.12 3.21
680 681 5.494390 AGATGCCAAGCTATCATCACATA 57.506 39.130 18.80 0.00 39.12 2.29
681 682 5.243981 AGATGCCAAGCTATCATCACATAC 58.756 41.667 18.80 0.00 39.12 2.39
682 683 3.392882 TGCCAAGCTATCATCACATACG 58.607 45.455 0.00 0.00 0.00 3.06
683 684 3.181466 TGCCAAGCTATCATCACATACGT 60.181 43.478 0.00 0.00 0.00 3.57
684 685 3.809832 GCCAAGCTATCATCACATACGTT 59.190 43.478 0.00 0.00 0.00 3.99
685 686 4.319046 GCCAAGCTATCATCACATACGTTG 60.319 45.833 0.00 0.00 0.00 4.10
686 687 4.811024 CCAAGCTATCATCACATACGTTGT 59.189 41.667 0.00 0.00 39.91 3.32
687 688 5.983118 CCAAGCTATCATCACATACGTTGTA 59.017 40.000 0.00 0.00 36.57 2.41
688 689 6.144563 CCAAGCTATCATCACATACGTTGTAG 59.855 42.308 0.00 0.00 36.57 2.74
689 690 6.635030 AGCTATCATCACATACGTTGTAGA 57.365 37.500 0.00 0.10 36.57 2.59
690 691 6.439599 AGCTATCATCACATACGTTGTAGAC 58.560 40.000 0.00 0.00 36.57 2.59
698 699 3.236322 CGTTGTAGACGCCGCAAA 58.764 55.556 0.00 0.00 45.86 3.68
699 700 1.565591 CGTTGTAGACGCCGCAAAA 59.434 52.632 0.00 0.00 45.86 2.44
700 701 0.042013 CGTTGTAGACGCCGCAAAAA 60.042 50.000 0.00 0.00 45.86 1.94
701 702 1.399215 CGTTGTAGACGCCGCAAAAAT 60.399 47.619 0.00 0.00 45.86 1.82
702 703 2.159814 CGTTGTAGACGCCGCAAAAATA 60.160 45.455 0.00 0.00 45.86 1.40
706 707 5.049398 TGTAGACGCCGCAAAAATAAAAT 57.951 34.783 0.00 0.00 0.00 1.82
709 710 7.082602 TGTAGACGCCGCAAAAATAAAATAAA 58.917 30.769 0.00 0.00 0.00 1.40
835 836 1.632046 CGTACAATGTGCGGACCCAC 61.632 60.000 15.84 6.24 37.94 4.61
855 856 2.178544 ACCCCTAGCTCTTCCCGTAATA 59.821 50.000 0.00 0.00 0.00 0.98
857 858 3.006644 CCCCTAGCTCTTCCCGTAATAAC 59.993 52.174 0.00 0.00 0.00 1.89
861 862 6.294620 CCCTAGCTCTTCCCGTAATAACTAAG 60.295 46.154 0.00 0.00 0.00 2.18
865 866 6.832900 AGCTCTTCCCGTAATAACTAAGTAGT 59.167 38.462 0.00 0.00 38.39 2.73
922 952 9.833182 CGCGTCAATCAAGCTATCTATATATAT 57.167 33.333 0.00 0.00 0.00 0.86
950 990 0.865111 CCAAGTCACGAATCGCACAA 59.135 50.000 1.15 0.00 0.00 3.33
951 991 1.262950 CCAAGTCACGAATCGCACAAA 59.737 47.619 1.15 0.00 0.00 2.83
952 992 2.563976 CAAGTCACGAATCGCACAAAG 58.436 47.619 1.15 0.00 0.00 2.77
953 993 0.512952 AGTCACGAATCGCACAAAGC 59.487 50.000 1.15 0.00 40.87 3.51
954 994 0.234625 GTCACGAATCGCACAAAGCA 59.765 50.000 1.15 0.00 46.13 3.91
956 996 1.044725 CACGAATCGCACAAAGCAAC 58.955 50.000 1.15 0.00 46.13 4.17
957 997 0.384230 ACGAATCGCACAAAGCAACG 60.384 50.000 1.15 0.00 46.13 4.10
959 999 1.595609 GAATCGCACAAAGCAACGAG 58.404 50.000 0.00 0.00 46.13 4.18
960 1000 1.194547 GAATCGCACAAAGCAACGAGA 59.805 47.619 0.00 0.00 46.13 4.04
961 1001 1.225855 ATCGCACAAAGCAACGAGAA 58.774 45.000 0.00 0.00 46.13 2.87
972 1031 0.370273 CAACGAGAAATTCCTCCGCG 59.630 55.000 0.00 0.00 0.00 6.46
984 1043 4.838152 TCCGCGGCAGCAGGATTC 62.838 66.667 23.51 0.00 45.49 2.52
1071 1130 4.016706 CCCGGGGACAAGCTCGTT 62.017 66.667 14.71 0.00 0.00 3.85
1093 1152 1.445582 GACCTCGACGACGCCAATT 60.446 57.895 1.48 0.00 39.58 2.32
1191 1253 2.497770 GCATACCCTACCGCACGT 59.502 61.111 0.00 0.00 0.00 4.49
1361 1456 3.009033 AGGCAAGGCAGATACTACAACAA 59.991 43.478 0.00 0.00 0.00 2.83
1362 1457 3.127030 GGCAAGGCAGATACTACAACAAC 59.873 47.826 0.00 0.00 0.00 3.32
1363 1458 3.751175 GCAAGGCAGATACTACAACAACA 59.249 43.478 0.00 0.00 0.00 3.33
1364 1459 4.215399 GCAAGGCAGATACTACAACAACAA 59.785 41.667 0.00 0.00 0.00 2.83
1365 1460 5.689819 CAAGGCAGATACTACAACAACAAC 58.310 41.667 0.00 0.00 0.00 3.32
1366 1461 4.968259 AGGCAGATACTACAACAACAACA 58.032 39.130 0.00 0.00 0.00 3.33
1367 1462 5.373222 AGGCAGATACTACAACAACAACAA 58.627 37.500 0.00 0.00 0.00 2.83
1368 1463 5.238650 AGGCAGATACTACAACAACAACAAC 59.761 40.000 0.00 0.00 0.00 3.32
1369 1464 5.008217 GGCAGATACTACAACAACAACAACA 59.992 40.000 0.00 0.00 0.00 3.33
1584 1700 3.552132 TCCTTGAAGTAGTGCAACACA 57.448 42.857 0.00 0.00 41.43 3.72
1704 1852 6.038603 TCCATTCTCTTGTTGTTGAGTTCTTG 59.961 38.462 0.00 0.00 0.00 3.02
1759 1907 8.212995 TGTGAAGAAAATATCCATGCATCTCTA 58.787 33.333 0.00 0.00 0.00 2.43
1761 1909 9.445878 TGAAGAAAATATCCATGCATCTCTATC 57.554 33.333 0.00 0.00 0.00 2.08
1772 1920 6.183360 CCATGCATCTCTATCCTATCAATCGA 60.183 42.308 0.00 0.00 0.00 3.59
1938 2087 1.298413 CGTGTGGCGTCGATAGGAG 60.298 63.158 0.00 0.00 35.54 3.69
2098 2247 3.770040 CGACCCAGCCGATCCACA 61.770 66.667 0.00 0.00 0.00 4.17
2500 2649 5.571791 TTAGGCACTTAAGTAGTTGGGTT 57.428 39.130 8.04 0.00 41.75 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.430921 GTCGCGAGGTGGTGACTG 60.431 66.667 10.24 0.00 42.63 3.51
1 2 2.910479 TGTCGCGAGGTGGTGACT 60.910 61.111 10.24 0.00 45.36 3.41
2 3 2.733593 GTGTCGCGAGGTGGTGAC 60.734 66.667 10.24 0.00 45.35 3.67
3 4 4.337060 CGTGTCGCGAGGTGGTGA 62.337 66.667 10.24 0.00 44.77 4.02
94 95 3.827898 GTCGAGAGGAGCACCGGG 61.828 72.222 6.32 0.00 41.83 5.73
95 96 3.827898 GGTCGAGAGGAGCACCGG 61.828 72.222 0.00 0.00 42.75 5.28
96 97 3.827898 GGGTCGAGAGGAGCACCG 61.828 72.222 0.00 0.00 45.03 4.94
97 98 3.462678 GGGGTCGAGAGGAGCACC 61.463 72.222 0.00 0.00 45.03 5.01
98 99 3.827898 CGGGGTCGAGAGGAGCAC 61.828 72.222 0.00 0.00 45.03 4.40
101 102 3.522731 CAGCGGGGTCGAGAGGAG 61.523 72.222 0.00 0.00 39.00 3.69
102 103 4.361971 ACAGCGGGGTCGAGAGGA 62.362 66.667 0.00 0.00 39.00 3.71
103 104 3.827898 GACAGCGGGGTCGAGAGG 61.828 72.222 0.00 0.00 39.00 3.69
104 105 3.827898 GGACAGCGGGGTCGAGAG 61.828 72.222 0.00 0.00 38.70 3.20
122 123 4.139420 CTCGTCTTTGCTGGCGCG 62.139 66.667 0.00 0.00 39.65 6.86
123 124 2.233007 CTTCTCGTCTTTGCTGGCGC 62.233 60.000 0.00 0.00 0.00 6.53
124 125 1.630244 CCTTCTCGTCTTTGCTGGCG 61.630 60.000 0.00 0.00 0.00 5.69
125 126 0.320771 TCCTTCTCGTCTTTGCTGGC 60.321 55.000 0.00 0.00 0.00 4.85
126 127 2.005451 CATCCTTCTCGTCTTTGCTGG 58.995 52.381 0.00 0.00 0.00 4.85
127 128 2.005451 CCATCCTTCTCGTCTTTGCTG 58.995 52.381 0.00 0.00 0.00 4.41
128 129 1.065854 CCCATCCTTCTCGTCTTTGCT 60.066 52.381 0.00 0.00 0.00 3.91
129 130 1.373570 CCCATCCTTCTCGTCTTTGC 58.626 55.000 0.00 0.00 0.00 3.68
130 131 1.555075 TCCCCATCCTTCTCGTCTTTG 59.445 52.381 0.00 0.00 0.00 2.77
131 132 1.834263 CTCCCCATCCTTCTCGTCTTT 59.166 52.381 0.00 0.00 0.00 2.52
132 133 1.007238 TCTCCCCATCCTTCTCGTCTT 59.993 52.381 0.00 0.00 0.00 3.01
133 134 0.631753 TCTCCCCATCCTTCTCGTCT 59.368 55.000 0.00 0.00 0.00 4.18
134 135 1.410882 CTTCTCCCCATCCTTCTCGTC 59.589 57.143 0.00 0.00 0.00 4.20
135 136 1.490574 CTTCTCCCCATCCTTCTCGT 58.509 55.000 0.00 0.00 0.00 4.18
136 137 0.105778 GCTTCTCCCCATCCTTCTCG 59.894 60.000 0.00 0.00 0.00 4.04
137 138 0.472044 GGCTTCTCCCCATCCTTCTC 59.528 60.000 0.00 0.00 0.00 2.87
138 139 2.626510 GGCTTCTCCCCATCCTTCT 58.373 57.895 0.00 0.00 0.00 2.85
189 190 4.752879 TGCCTTCCGTAGTGCCGC 62.753 66.667 0.00 0.00 0.00 6.53
190 191 2.509336 CTGCCTTCCGTAGTGCCG 60.509 66.667 0.00 0.00 0.00 5.69
191 192 2.820037 GCTGCCTTCCGTAGTGCC 60.820 66.667 0.00 0.00 0.00 5.01
192 193 3.188786 CGCTGCCTTCCGTAGTGC 61.189 66.667 0.00 0.00 0.00 4.40
193 194 1.517257 CTCGCTGCCTTCCGTAGTG 60.517 63.158 0.00 0.00 36.15 2.74
194 195 2.711922 CCTCGCTGCCTTCCGTAGT 61.712 63.158 0.00 0.00 0.00 2.73
195 196 2.105128 CCTCGCTGCCTTCCGTAG 59.895 66.667 0.00 0.00 0.00 3.51
196 197 2.361992 TCCTCGCTGCCTTCCGTA 60.362 61.111 0.00 0.00 0.00 4.02
197 198 3.764466 CTCCTCGCTGCCTTCCGT 61.764 66.667 0.00 0.00 0.00 4.69
198 199 4.521062 CCTCCTCGCTGCCTTCCG 62.521 72.222 0.00 0.00 0.00 4.30
199 200 4.168291 CCCTCCTCGCTGCCTTCC 62.168 72.222 0.00 0.00 0.00 3.46
200 201 3.077556 TCCCTCCTCGCTGCCTTC 61.078 66.667 0.00 0.00 0.00 3.46
201 202 3.080121 CTCCCTCCTCGCTGCCTT 61.080 66.667 0.00 0.00 0.00 4.35
202 203 4.067512 TCTCCCTCCTCGCTGCCT 62.068 66.667 0.00 0.00 0.00 4.75
203 204 3.535962 CTCTCCCTCCTCGCTGCC 61.536 72.222 0.00 0.00 0.00 4.85
204 205 2.441164 TCTCTCCCTCCTCGCTGC 60.441 66.667 0.00 0.00 0.00 5.25
205 206 1.827789 CCTCTCTCCCTCCTCGCTG 60.828 68.421 0.00 0.00 0.00 5.18
206 207 2.600731 CCTCTCTCCCTCCTCGCT 59.399 66.667 0.00 0.00 0.00 4.93
207 208 3.223589 GCCTCTCTCCCTCCTCGC 61.224 72.222 0.00 0.00 0.00 5.03
208 209 2.904866 CGCCTCTCTCCCTCCTCG 60.905 72.222 0.00 0.00 0.00 4.63
209 210 2.520741 CCGCCTCTCTCCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
210 211 3.024356 TCCGCCTCTCTCCCTCCT 61.024 66.667 0.00 0.00 0.00 3.69
211 212 2.520741 CTCCGCCTCTCTCCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
212 213 1.076632 TTCTCCGCCTCTCTCCCTC 60.077 63.158 0.00 0.00 0.00 4.30
213 214 1.076339 CTTCTCCGCCTCTCTCCCT 60.076 63.158 0.00 0.00 0.00 4.20
214 215 2.131067 CCTTCTCCGCCTCTCTCCC 61.131 68.421 0.00 0.00 0.00 4.30
215 216 1.380650 ACCTTCTCCGCCTCTCTCC 60.381 63.158 0.00 0.00 0.00 3.71
216 217 1.813192 CACCTTCTCCGCCTCTCTC 59.187 63.158 0.00 0.00 0.00 3.20
217 218 2.355193 GCACCTTCTCCGCCTCTCT 61.355 63.158 0.00 0.00 0.00 3.10
218 219 2.185608 GCACCTTCTCCGCCTCTC 59.814 66.667 0.00 0.00 0.00 3.20
219 220 3.764466 CGCACCTTCTCCGCCTCT 61.764 66.667 0.00 0.00 0.00 3.69
220 221 3.708220 CTCGCACCTTCTCCGCCTC 62.708 68.421 0.00 0.00 0.00 4.70
221 222 3.764466 CTCGCACCTTCTCCGCCT 61.764 66.667 0.00 0.00 0.00 5.52
222 223 3.296709 TTCTCGCACCTTCTCCGCC 62.297 63.158 0.00 0.00 0.00 6.13
223 224 1.807573 CTTCTCGCACCTTCTCCGC 60.808 63.158 0.00 0.00 0.00 5.54
224 225 1.807573 GCTTCTCGCACCTTCTCCG 60.808 63.158 0.00 0.00 38.92 4.63
225 226 1.807573 CGCTTCTCGCACCTTCTCC 60.808 63.158 0.00 0.00 39.08 3.71
226 227 0.388649 TTCGCTTCTCGCACCTTCTC 60.389 55.000 0.00 0.00 39.08 2.87
227 228 0.389166 CTTCGCTTCTCGCACCTTCT 60.389 55.000 0.00 0.00 39.08 2.85
228 229 0.667792 ACTTCGCTTCTCGCACCTTC 60.668 55.000 0.00 0.00 39.08 3.46
229 230 0.667792 GACTTCGCTTCTCGCACCTT 60.668 55.000 0.00 0.00 39.08 3.50
230 231 1.080434 GACTTCGCTTCTCGCACCT 60.080 57.895 0.00 0.00 39.08 4.00
231 232 0.170561 TAGACTTCGCTTCTCGCACC 59.829 55.000 0.00 0.00 39.08 5.01
232 233 1.540407 CTAGACTTCGCTTCTCGCAC 58.460 55.000 0.00 0.00 39.08 5.34
233 234 0.452184 CCTAGACTTCGCTTCTCGCA 59.548 55.000 0.00 0.00 39.08 5.10
234 235 0.248702 CCCTAGACTTCGCTTCTCGC 60.249 60.000 0.00 0.00 38.27 5.03
235 236 1.096416 ACCCTAGACTTCGCTTCTCG 58.904 55.000 0.00 0.00 40.15 4.04
236 237 3.513662 GAAACCCTAGACTTCGCTTCTC 58.486 50.000 0.00 0.00 0.00 2.87
237 238 2.234168 GGAAACCCTAGACTTCGCTTCT 59.766 50.000 0.00 0.00 0.00 2.85
238 239 2.619147 GGAAACCCTAGACTTCGCTTC 58.381 52.381 0.00 0.00 0.00 3.86
239 240 2.764439 GGAAACCCTAGACTTCGCTT 57.236 50.000 0.00 0.00 0.00 4.68
265 266 0.037419 AAATGTTCATGGCGGGCAAC 60.037 50.000 8.78 2.87 0.00 4.17
266 267 0.683973 AAAATGTTCATGGCGGGCAA 59.316 45.000 8.78 0.00 0.00 4.52
267 268 1.203523 GTAAAATGTTCATGGCGGGCA 59.796 47.619 6.74 6.74 0.00 5.36
268 269 1.797348 CGTAAAATGTTCATGGCGGGC 60.797 52.381 0.00 0.00 0.00 6.13
269 270 1.470890 ACGTAAAATGTTCATGGCGGG 59.529 47.619 0.00 0.00 0.00 6.13
270 271 2.911819 ACGTAAAATGTTCATGGCGG 57.088 45.000 0.00 0.00 0.00 6.13
271 272 5.401079 AGAAAAACGTAAAATGTTCATGGCG 59.599 36.000 0.00 0.00 0.00 5.69
272 273 6.763303 AGAAAAACGTAAAATGTTCATGGC 57.237 33.333 0.00 0.00 0.00 4.40
329 330 8.776470 AGCGAAATCAAAAATGTTCATGAATTT 58.224 25.926 12.12 6.32 0.00 1.82
330 331 8.314143 AGCGAAATCAAAAATGTTCATGAATT 57.686 26.923 12.12 0.00 0.00 2.17
331 332 7.894376 AGCGAAATCAAAAATGTTCATGAAT 57.106 28.000 12.12 0.00 0.00 2.57
332 333 8.809159 TTAGCGAAATCAAAAATGTTCATGAA 57.191 26.923 3.38 3.38 0.00 2.57
333 334 8.862074 CATTAGCGAAATCAAAAATGTTCATGA 58.138 29.630 0.00 0.00 0.00 3.07
334 335 8.649841 ACATTAGCGAAATCAAAAATGTTCATG 58.350 29.630 0.00 0.00 34.76 3.07
335 336 8.761575 ACATTAGCGAAATCAAAAATGTTCAT 57.238 26.923 0.00 0.00 34.76 2.57
336 337 8.586570 AACATTAGCGAAATCAAAAATGTTCA 57.413 26.923 5.63 0.00 41.30 3.18
337 338 9.862585 AAAACATTAGCGAAATCAAAAATGTTC 57.137 25.926 10.59 0.00 43.18 3.18
338 339 9.862585 GAAAACATTAGCGAAATCAAAAATGTT 57.137 25.926 5.63 5.63 44.86 2.71
339 340 8.495148 GGAAAACATTAGCGAAATCAAAAATGT 58.505 29.630 0.00 0.00 38.75 2.71
340 341 8.494347 TGGAAAACATTAGCGAAATCAAAAATG 58.506 29.630 0.00 0.00 0.00 2.32
341 342 8.600449 TGGAAAACATTAGCGAAATCAAAAAT 57.400 26.923 0.00 0.00 0.00 1.82
342 343 8.494347 CATGGAAAACATTAGCGAAATCAAAAA 58.506 29.630 0.00 0.00 37.84 1.94
343 344 7.359933 GCATGGAAAACATTAGCGAAATCAAAA 60.360 33.333 0.00 0.00 37.84 2.44
344 345 6.090628 GCATGGAAAACATTAGCGAAATCAAA 59.909 34.615 0.00 0.00 37.84 2.69
345 346 5.576384 GCATGGAAAACATTAGCGAAATCAA 59.424 36.000 0.00 0.00 37.84 2.57
346 347 5.101628 GCATGGAAAACATTAGCGAAATCA 58.898 37.500 0.00 0.00 37.84 2.57
347 348 5.101628 TGCATGGAAAACATTAGCGAAATC 58.898 37.500 0.00 0.00 37.84 2.17
348 349 5.070770 TGCATGGAAAACATTAGCGAAAT 57.929 34.783 0.00 0.00 37.84 2.17
349 350 4.511617 TGCATGGAAAACATTAGCGAAA 57.488 36.364 0.00 0.00 37.84 3.46
350 351 4.082300 ACATGCATGGAAAACATTAGCGAA 60.082 37.500 29.41 0.00 37.84 4.70
351 352 3.443329 ACATGCATGGAAAACATTAGCGA 59.557 39.130 29.41 0.00 37.84 4.93
352 353 3.548668 CACATGCATGGAAAACATTAGCG 59.451 43.478 29.41 0.42 37.84 4.26
353 354 3.307782 GCACATGCATGGAAAACATTAGC 59.692 43.478 29.41 13.06 37.84 3.09
354 355 3.866910 GGCACATGCATGGAAAACATTAG 59.133 43.478 29.41 7.82 44.36 1.73
355 356 3.260128 TGGCACATGCATGGAAAACATTA 59.740 39.130 29.41 4.34 44.36 1.90
356 357 2.038689 TGGCACATGCATGGAAAACATT 59.961 40.909 29.41 3.93 44.36 2.71
357 358 1.624312 TGGCACATGCATGGAAAACAT 59.376 42.857 29.41 4.72 44.36 2.71
358 359 1.046204 TGGCACATGCATGGAAAACA 58.954 45.000 29.41 17.32 44.36 2.83
359 360 3.910817 TGGCACATGCATGGAAAAC 57.089 47.368 29.41 15.12 44.36 2.43
369 370 1.447663 TCGGTCACGATGGCACATG 60.448 57.895 0.00 0.00 45.59 3.21
370 371 2.978000 TCGGTCACGATGGCACAT 59.022 55.556 0.00 0.00 45.59 3.21
375 376 8.710277 ATGGAAAACATTTTCGGTCACGATGG 62.710 42.308 10.22 0.00 45.68 3.51
376 377 5.846155 ATGGAAAACATTTTCGGTCACGATG 60.846 40.000 10.22 0.00 45.68 3.84
377 378 4.217550 ATGGAAAACATTTTCGGTCACGAT 59.782 37.500 10.22 0.00 45.68 3.73
378 379 3.566322 ATGGAAAACATTTTCGGTCACGA 59.434 39.130 10.22 0.00 45.68 4.35
379 380 3.341857 TGGAAAACATTTTCGGTCACG 57.658 42.857 10.22 0.00 45.68 4.35
380 381 3.428534 GCATGGAAAACATTTTCGGTCAC 59.571 43.478 10.22 0.00 45.68 3.67
381 382 3.068732 TGCATGGAAAACATTTTCGGTCA 59.931 39.130 10.22 4.56 45.68 4.02
382 383 3.648009 TGCATGGAAAACATTTTCGGTC 58.352 40.909 10.22 0.00 45.68 4.79
383 384 3.742433 TGCATGGAAAACATTTTCGGT 57.258 38.095 10.22 0.44 45.68 4.69
384 385 5.610235 AAATGCATGGAAAACATTTTCGG 57.390 34.783 0.00 4.90 45.68 4.30
385 386 9.609950 ATTTTAAATGCATGGAAAACATTTTCG 57.390 25.926 16.94 0.07 45.68 3.46
391 392 8.021973 GCATGAATTTTAAATGCATGGAAAACA 58.978 29.630 29.41 13.12 44.83 2.83
392 393 7.216693 CGCATGAATTTTAAATGCATGGAAAAC 59.783 33.333 29.41 16.91 45.56 2.43
393 394 7.094890 ACGCATGAATTTTAAATGCATGGAAAA 60.095 29.630 29.41 16.92 45.56 2.29
394 395 6.370994 ACGCATGAATTTTAAATGCATGGAAA 59.629 30.769 29.41 0.56 45.56 3.13
395 396 5.873712 ACGCATGAATTTTAAATGCATGGAA 59.126 32.000 29.41 0.00 45.56 3.53
396 397 5.291371 CACGCATGAATTTTAAATGCATGGA 59.709 36.000 29.41 0.00 45.56 3.41
397 398 5.063691 ACACGCATGAATTTTAAATGCATGG 59.936 36.000 29.41 23.15 42.95 3.66
398 399 5.954922 CACACGCATGAATTTTAAATGCATG 59.045 36.000 26.32 26.32 45.56 4.06
399 400 5.446206 GCACACGCATGAATTTTAAATGCAT 60.446 36.000 5.37 5.37 45.56 3.96
400 401 4.143158 GCACACGCATGAATTTTAAATGCA 60.143 37.500 0.27 0.27 45.56 3.96
401 402 4.325386 GCACACGCATGAATTTTAAATGC 58.675 39.130 0.00 1.42 42.59 3.56
402 403 4.626604 AGGCACACGCATGAATTTTAAATG 59.373 37.500 0.00 0.00 41.24 2.32
403 404 4.819769 AGGCACACGCATGAATTTTAAAT 58.180 34.783 0.00 0.00 41.24 1.40
404 405 4.250116 AGGCACACGCATGAATTTTAAA 57.750 36.364 0.00 0.00 41.24 1.52
405 406 3.932545 AGGCACACGCATGAATTTTAA 57.067 38.095 0.00 0.00 41.24 1.52
406 407 3.005261 ACAAGGCACACGCATGAATTTTA 59.995 39.130 0.00 0.00 41.24 1.52
407 408 2.224018 ACAAGGCACACGCATGAATTTT 60.224 40.909 0.00 0.00 41.24 1.82
408 409 1.340889 ACAAGGCACACGCATGAATTT 59.659 42.857 0.00 0.00 41.24 1.82
409 410 0.961019 ACAAGGCACACGCATGAATT 59.039 45.000 0.00 0.00 41.24 2.17
410 411 0.241749 CACAAGGCACACGCATGAAT 59.758 50.000 0.00 0.00 41.24 2.57
411 412 0.817229 TCACAAGGCACACGCATGAA 60.817 50.000 0.00 0.00 41.24 2.57
412 413 1.227793 TCACAAGGCACACGCATGA 60.228 52.632 0.00 0.00 41.24 3.07
413 414 1.081906 GTCACAAGGCACACGCATG 60.082 57.895 0.00 0.00 41.24 4.06
414 415 2.260869 GGTCACAAGGCACACGCAT 61.261 57.895 0.00 0.00 41.24 4.73
415 416 2.034048 TAGGTCACAAGGCACACGCA 62.034 55.000 0.00 0.00 41.24 5.24
416 417 0.882927 TTAGGTCACAAGGCACACGC 60.883 55.000 0.00 0.00 37.44 5.34
417 418 1.588674 TTTAGGTCACAAGGCACACG 58.411 50.000 0.00 0.00 0.00 4.49
418 419 5.897377 ATATTTTAGGTCACAAGGCACAC 57.103 39.130 0.00 0.00 0.00 3.82
419 420 9.116067 GTATTATATTTTAGGTCACAAGGCACA 57.884 33.333 0.00 0.00 0.00 4.57
420 421 9.116067 TGTATTATATTTTAGGTCACAAGGCAC 57.884 33.333 0.00 0.00 0.00 5.01
421 422 9.688091 TTGTATTATATTTTAGGTCACAAGGCA 57.312 29.630 0.00 0.00 0.00 4.75
422 423 9.946165 GTTGTATTATATTTTAGGTCACAAGGC 57.054 33.333 0.00 0.00 0.00 4.35
441 442 9.750125 GGAAACTCTCTTTTCAAATGTTGTATT 57.250 29.630 0.00 0.00 37.24 1.89
442 443 8.912988 TGGAAACTCTCTTTTCAAATGTTGTAT 58.087 29.630 0.00 0.00 37.24 2.29
443 444 8.287439 TGGAAACTCTCTTTTCAAATGTTGTA 57.713 30.769 0.00 0.00 37.24 2.41
444 445 7.169158 TGGAAACTCTCTTTTCAAATGTTGT 57.831 32.000 0.00 0.00 37.24 3.32
445 446 7.707893 ACATGGAAACTCTCTTTTCAAATGTTG 59.292 33.333 0.00 0.00 39.18 3.33
446 447 7.785033 ACATGGAAACTCTCTTTTCAAATGTT 58.215 30.769 0.00 0.00 39.18 2.71
447 448 7.352079 ACATGGAAACTCTCTTTTCAAATGT 57.648 32.000 0.00 8.94 38.36 2.71
448 449 9.350357 CATACATGGAAACTCTCTTTTCAAATG 57.650 33.333 0.00 0.00 37.24 2.32
449 450 9.300681 TCATACATGGAAACTCTCTTTTCAAAT 57.699 29.630 0.00 0.00 37.24 2.32
450 451 8.690203 TCATACATGGAAACTCTCTTTTCAAA 57.310 30.769 0.00 0.00 37.24 2.69
451 452 8.868522 ATCATACATGGAAACTCTCTTTTCAA 57.131 30.769 0.00 0.00 37.24 2.69
452 453 8.868522 AATCATACATGGAAACTCTCTTTTCA 57.131 30.769 0.00 0.00 37.24 2.69
453 454 8.401709 GGAATCATACATGGAAACTCTCTTTTC 58.598 37.037 0.00 0.00 35.13 2.29
454 455 8.112183 AGGAATCATACATGGAAACTCTCTTTT 58.888 33.333 0.00 0.00 0.00 2.27
455 456 7.637511 AGGAATCATACATGGAAACTCTCTTT 58.362 34.615 0.00 0.00 0.00 2.52
456 457 7.205515 AGGAATCATACATGGAAACTCTCTT 57.794 36.000 0.00 0.00 0.00 2.85
457 458 6.821616 AGGAATCATACATGGAAACTCTCT 57.178 37.500 0.00 0.00 0.00 3.10
458 459 9.566432 AATTAGGAATCATACATGGAAACTCTC 57.434 33.333 0.00 0.00 0.00 3.20
459 460 9.927081 AAATTAGGAATCATACATGGAAACTCT 57.073 29.630 0.00 0.00 0.00 3.24
486 487 9.991906 CTTATATTTAGGAACCGATGGAGTAAA 57.008 33.333 0.00 0.00 0.00 2.01
487 488 9.151177 ACTTATATTTAGGAACCGATGGAGTAA 57.849 33.333 0.00 0.00 0.00 2.24
488 489 8.716674 ACTTATATTTAGGAACCGATGGAGTA 57.283 34.615 0.00 0.00 0.00 2.59
489 490 7.509659 AGACTTATATTTAGGAACCGATGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
490 491 7.897864 AGACTTATATTTAGGAACCGATGGAG 58.102 38.462 0.00 0.00 0.00 3.86
491 492 7.850935 AGACTTATATTTAGGAACCGATGGA 57.149 36.000 0.00 0.00 0.00 3.41
492 493 8.904099 AAAGACTTATATTTAGGAACCGATGG 57.096 34.615 0.00 0.00 0.00 3.51
510 511 9.010029 TCCGCTTTGAAATCTATAAAAAGACTT 57.990 29.630 0.00 0.00 31.01 3.01
511 512 8.451748 GTCCGCTTTGAAATCTATAAAAAGACT 58.548 33.333 0.00 0.00 31.01 3.24
512 513 8.451748 AGTCCGCTTTGAAATCTATAAAAAGAC 58.548 33.333 0.00 0.00 31.01 3.01
513 514 8.561738 AGTCCGCTTTGAAATCTATAAAAAGA 57.438 30.769 0.00 0.00 31.01 2.52
514 515 9.704098 GTAGTCCGCTTTGAAATCTATAAAAAG 57.296 33.333 0.00 0.00 0.00 2.27
515 516 9.221933 TGTAGTCCGCTTTGAAATCTATAAAAA 57.778 29.630 0.00 0.00 0.00 1.94
516 517 8.780846 TGTAGTCCGCTTTGAAATCTATAAAA 57.219 30.769 0.00 0.00 0.00 1.52
517 518 8.958119 ATGTAGTCCGCTTTGAAATCTATAAA 57.042 30.769 0.00 0.00 0.00 1.40
518 519 9.472361 GTATGTAGTCCGCTTTGAAATCTATAA 57.528 33.333 0.00 0.00 0.00 0.98
519 520 8.635328 TGTATGTAGTCCGCTTTGAAATCTATA 58.365 33.333 0.00 0.00 0.00 1.31
520 521 7.497595 TGTATGTAGTCCGCTTTGAAATCTAT 58.502 34.615 0.00 0.00 0.00 1.98
521 522 6.869695 TGTATGTAGTCCGCTTTGAAATCTA 58.130 36.000 0.00 0.00 0.00 1.98
522 523 5.730550 TGTATGTAGTCCGCTTTGAAATCT 58.269 37.500 0.00 0.00 0.00 2.40
523 524 6.417191 TTGTATGTAGTCCGCTTTGAAATC 57.583 37.500 0.00 0.00 0.00 2.17
524 525 7.094377 ACAATTGTATGTAGTCCGCTTTGAAAT 60.094 33.333 9.97 0.00 0.00 2.17
525 526 6.205853 ACAATTGTATGTAGTCCGCTTTGAAA 59.794 34.615 9.97 0.00 0.00 2.69
526 527 5.703592 ACAATTGTATGTAGTCCGCTTTGAA 59.296 36.000 9.97 0.00 0.00 2.69
527 528 5.242434 ACAATTGTATGTAGTCCGCTTTGA 58.758 37.500 9.97 0.00 0.00 2.69
528 529 5.545658 ACAATTGTATGTAGTCCGCTTTG 57.454 39.130 9.97 0.00 0.00 2.77
530 531 9.856488 CTATATACAATTGTATGTAGTCCGCTT 57.144 33.333 33.21 15.48 42.63 4.68
531 532 9.239551 TCTATATACAATTGTATGTAGTCCGCT 57.760 33.333 36.19 18.23 45.24 5.52
532 533 9.286946 GTCTATATACAATTGTATGTAGTCCGC 57.713 37.037 36.19 27.10 45.24 5.54
533 534 9.486857 CGTCTATATACAATTGTATGTAGTCCG 57.513 37.037 36.19 33.61 45.24 4.79
579 580 9.832445 ACGGACTACATATGAAGTAAAATGAAT 57.168 29.630 10.38 0.00 0.00 2.57
581 582 9.961265 CTACGGACTACATATGAAGTAAAATGA 57.039 33.333 10.38 0.00 0.00 2.57
582 583 9.745880 ACTACGGACTACATATGAAGTAAAATG 57.254 33.333 10.38 0.00 0.00 2.32
588 589 9.962783 GAATTTACTACGGACTACATATGAAGT 57.037 33.333 10.38 2.74 0.00 3.01
591 592 9.570468 AGAGAATTTACTACGGACTACATATGA 57.430 33.333 10.38 0.00 0.00 2.15
594 595 9.399797 TCAAGAGAATTTACTACGGACTACATA 57.600 33.333 0.00 0.00 0.00 2.29
595 596 8.289939 TCAAGAGAATTTACTACGGACTACAT 57.710 34.615 0.00 0.00 0.00 2.29
596 597 7.692460 TCAAGAGAATTTACTACGGACTACA 57.308 36.000 0.00 0.00 0.00 2.74
597 598 8.976986 TTTCAAGAGAATTTACTACGGACTAC 57.023 34.615 0.00 0.00 32.89 2.73
598 599 9.017509 TCTTTCAAGAGAATTTACTACGGACTA 57.982 33.333 0.00 0.00 32.89 2.59
599 600 7.813627 GTCTTTCAAGAGAATTTACTACGGACT 59.186 37.037 0.00 0.00 35.32 3.85
600 601 7.813627 AGTCTTTCAAGAGAATTTACTACGGAC 59.186 37.037 0.00 0.00 35.32 4.79
601 602 7.893658 AGTCTTTCAAGAGAATTTACTACGGA 58.106 34.615 0.00 0.00 35.32 4.69
602 603 8.535690 AAGTCTTTCAAGAGAATTTACTACGG 57.464 34.615 0.00 0.00 35.32 4.02
609 610 9.372369 CTCCGTATAAGTCTTTCAAGAGAATTT 57.628 33.333 0.00 0.00 35.74 1.82
610 611 8.532819 ACTCCGTATAAGTCTTTCAAGAGAATT 58.467 33.333 0.00 0.00 37.65 2.17
611 612 8.068892 ACTCCGTATAAGTCTTTCAAGAGAAT 57.931 34.615 0.00 0.00 35.32 2.40
612 613 7.463961 ACTCCGTATAAGTCTTTCAAGAGAA 57.536 36.000 0.00 0.00 35.32 2.87
613 614 8.749026 ATACTCCGTATAAGTCTTTCAAGAGA 57.251 34.615 0.00 0.00 35.32 3.10
614 615 9.804758 AAATACTCCGTATAAGTCTTTCAAGAG 57.195 33.333 0.00 0.00 35.32 2.85
628 629 9.804758 CTTTCTCTGTTTCTAAATACTCCGTAT 57.195 33.333 0.00 0.00 0.00 3.06
629 630 9.017509 TCTTTCTCTGTTTCTAAATACTCCGTA 57.982 33.333 0.00 0.00 0.00 4.02
630 631 7.893658 TCTTTCTCTGTTTCTAAATACTCCGT 58.106 34.615 0.00 0.00 0.00 4.69
631 632 8.030106 ACTCTTTCTCTGTTTCTAAATACTCCG 58.970 37.037 0.00 0.00 0.00 4.63
637 638 9.377312 GCATCTACTCTTTCTCTGTTTCTAAAT 57.623 33.333 0.00 0.00 0.00 1.40
638 639 7.819900 GGCATCTACTCTTTCTCTGTTTCTAAA 59.180 37.037 0.00 0.00 0.00 1.85
639 640 7.039011 TGGCATCTACTCTTTCTCTGTTTCTAA 60.039 37.037 0.00 0.00 0.00 2.10
640 641 6.437477 TGGCATCTACTCTTTCTCTGTTTCTA 59.563 38.462 0.00 0.00 0.00 2.10
641 642 5.247110 TGGCATCTACTCTTTCTCTGTTTCT 59.753 40.000 0.00 0.00 0.00 2.52
642 643 5.482908 TGGCATCTACTCTTTCTCTGTTTC 58.517 41.667 0.00 0.00 0.00 2.78
643 644 5.489792 TGGCATCTACTCTTTCTCTGTTT 57.510 39.130 0.00 0.00 0.00 2.83
644 645 5.486526 CTTGGCATCTACTCTTTCTCTGTT 58.513 41.667 0.00 0.00 0.00 3.16
645 646 4.622695 GCTTGGCATCTACTCTTTCTCTGT 60.623 45.833 0.00 0.00 0.00 3.41
646 647 3.870419 GCTTGGCATCTACTCTTTCTCTG 59.130 47.826 0.00 0.00 0.00 3.35
647 648 3.774216 AGCTTGGCATCTACTCTTTCTCT 59.226 43.478 0.00 0.00 0.00 3.10
648 649 4.135747 AGCTTGGCATCTACTCTTTCTC 57.864 45.455 0.00 0.00 0.00 2.87
649 650 5.365025 TGATAGCTTGGCATCTACTCTTTCT 59.635 40.000 0.00 0.00 0.00 2.52
650 651 5.605534 TGATAGCTTGGCATCTACTCTTTC 58.394 41.667 0.00 0.00 0.00 2.62
651 652 5.620738 TGATAGCTTGGCATCTACTCTTT 57.379 39.130 0.00 0.00 0.00 2.52
652 653 5.306419 TGATGATAGCTTGGCATCTACTCTT 59.694 40.000 18.10 0.00 39.24 2.85
653 654 4.837298 TGATGATAGCTTGGCATCTACTCT 59.163 41.667 18.10 0.00 39.24 3.24
654 655 4.928615 GTGATGATAGCTTGGCATCTACTC 59.071 45.833 18.10 5.46 39.24 2.59
655 656 4.346127 TGTGATGATAGCTTGGCATCTACT 59.654 41.667 18.10 0.00 39.24 2.57
656 657 4.635223 TGTGATGATAGCTTGGCATCTAC 58.365 43.478 18.10 15.20 39.24 2.59
657 658 4.961438 TGTGATGATAGCTTGGCATCTA 57.039 40.909 18.10 0.00 39.24 1.98
658 659 3.851458 TGTGATGATAGCTTGGCATCT 57.149 42.857 18.10 0.00 39.24 2.90
659 660 4.092529 CGTATGTGATGATAGCTTGGCATC 59.907 45.833 13.23 13.23 39.02 3.91
660 661 3.999001 CGTATGTGATGATAGCTTGGCAT 59.001 43.478 0.00 0.00 0.00 4.40
661 662 3.181466 ACGTATGTGATGATAGCTTGGCA 60.181 43.478 0.00 0.00 0.00 4.92
662 663 3.393800 ACGTATGTGATGATAGCTTGGC 58.606 45.455 0.00 0.00 0.00 4.52
663 664 4.811024 ACAACGTATGTGATGATAGCTTGG 59.189 41.667 0.00 0.00 41.93 3.61
664 665 5.973651 ACAACGTATGTGATGATAGCTTG 57.026 39.130 0.00 0.00 41.93 4.01
665 666 6.918569 GTCTACAACGTATGTGATGATAGCTT 59.081 38.462 11.90 0.00 43.77 3.74
666 667 6.439599 GTCTACAACGTATGTGATGATAGCT 58.560 40.000 11.90 0.00 43.77 3.32
667 668 5.339875 CGTCTACAACGTATGTGATGATAGC 59.660 44.000 11.90 0.00 46.42 2.97
668 669 6.896829 CGTCTACAACGTATGTGATGATAG 57.103 41.667 11.90 3.06 46.42 2.08
682 683 2.325509 ATTTTTGCGGCGTCTACAAC 57.674 45.000 9.37 0.00 0.00 3.32
683 684 4.485024 TTTATTTTTGCGGCGTCTACAA 57.515 36.364 9.37 0.41 0.00 2.41
684 685 4.485024 TTTTATTTTTGCGGCGTCTACA 57.515 36.364 9.37 0.00 0.00 2.74
685 686 7.495339 TTTATTTTATTTTTGCGGCGTCTAC 57.505 32.000 9.37 0.00 0.00 2.59
686 687 8.690680 ATTTTATTTTATTTTTGCGGCGTCTA 57.309 26.923 9.37 0.00 0.00 2.59
687 688 7.329717 TGATTTTATTTTATTTTTGCGGCGTCT 59.670 29.630 9.37 0.00 0.00 4.18
688 689 7.421331 GTGATTTTATTTTATTTTTGCGGCGTC 59.579 33.333 9.37 0.91 0.00 5.19
689 690 7.230914 GTGATTTTATTTTATTTTTGCGGCGT 58.769 30.769 9.37 0.00 0.00 5.68
690 691 6.403777 CGTGATTTTATTTTATTTTTGCGGCG 59.596 34.615 0.51 0.51 0.00 6.46
691 692 7.230914 ACGTGATTTTATTTTATTTTTGCGGC 58.769 30.769 0.00 0.00 0.00 6.53
692 693 9.664826 GTACGTGATTTTATTTTATTTTTGCGG 57.335 29.630 0.00 0.00 0.00 5.69
693 694 9.375077 CGTACGTGATTTTATTTTATTTTTGCG 57.625 29.630 7.22 0.00 0.00 4.85
706 707 7.122550 GGTGTTTACAAACGTACGTGATTTTA 58.877 34.615 23.57 8.09 41.74 1.52
709 710 4.317980 CGGTGTTTACAAACGTACGTGATT 60.318 41.667 23.57 10.83 41.74 2.57
722 723 2.614983 GCTTCAACTTCCGGTGTTTACA 59.385 45.455 0.00 0.00 0.00 2.41
726 727 0.822121 GGGCTTCAACTTCCGGTGTT 60.822 55.000 0.00 5.50 0.00 3.32
757 758 2.027625 GGACTCCGACTTGGTTGCG 61.028 63.158 0.00 0.00 39.52 4.85
779 780 2.755655 AGGACTCGGACACAATCTACTG 59.244 50.000 0.00 0.00 0.00 2.74
835 836 1.718280 ATTACGGGAAGAGCTAGGGG 58.282 55.000 0.00 0.00 0.00 4.79
861 862 8.304202 TCCGAGTCGAATTAGATAGTTACTAC 57.696 38.462 15.64 0.00 0.00 2.73
865 866 8.162878 ACAATCCGAGTCGAATTAGATAGTTA 57.837 34.615 15.64 0.00 0.00 2.24
922 952 1.597854 CGTGACTTGGAGGCTTGCA 60.598 57.895 0.00 0.00 0.00 4.08
923 953 0.884704 TTCGTGACTTGGAGGCTTGC 60.885 55.000 0.00 0.00 0.00 4.01
925 955 1.673033 CGATTCGTGACTTGGAGGCTT 60.673 52.381 0.00 0.00 0.00 4.35
950 990 2.076863 CGGAGGAATTTCTCGTTGCTT 58.923 47.619 7.68 0.00 34.74 3.91
951 991 1.726853 CGGAGGAATTTCTCGTTGCT 58.273 50.000 7.68 0.00 34.74 3.91
952 992 0.097150 GCGGAGGAATTTCTCGTTGC 59.903 55.000 7.68 7.91 34.74 4.17
953 993 0.370273 CGCGGAGGAATTTCTCGTTG 59.630 55.000 7.68 1.72 34.74 4.10
954 994 0.739813 CCGCGGAGGAATTTCTCGTT 60.740 55.000 24.07 0.00 45.00 3.85
956 996 2.526120 GCCGCGGAGGAATTTCTCG 61.526 63.158 33.48 4.68 45.00 4.04
957 997 1.432270 CTGCCGCGGAGGAATTTCTC 61.432 60.000 33.48 5.03 45.00 2.87
959 999 3.102097 CTGCCGCGGAGGAATTTC 58.898 61.111 33.48 9.04 45.00 2.17
960 1000 3.134127 GCTGCCGCGGAGGAATTT 61.134 61.111 33.48 0.00 45.00 1.82
961 1001 4.408821 TGCTGCCGCGGAGGAATT 62.409 61.111 33.48 0.00 45.00 2.17
972 1031 1.440145 GGTAAGCGAATCCTGCTGCC 61.440 60.000 0.00 0.00 43.14 4.85
984 1043 0.939577 CCATGTCGATCGGGTAAGCG 60.940 60.000 16.41 0.00 0.00 4.68
1093 1152 3.126879 CGGCGCATCTTGCTTGGA 61.127 61.111 10.83 0.00 42.25 3.53
1191 1253 7.552687 AGCTGATTTTTCCTGATTACGTAATCA 59.447 33.333 36.23 36.23 46.99 2.57
1361 1456 7.201461 CGTTGTTGTAGTAGTAGTTGTTGTTGT 60.201 37.037 0.00 0.00 0.00 3.32
1362 1457 7.114920 CGTTGTTGTAGTAGTAGTTGTTGTTG 58.885 38.462 0.00 0.00 0.00 3.33
1363 1458 6.256321 CCGTTGTTGTAGTAGTAGTTGTTGTT 59.744 38.462 0.00 0.00 0.00 2.83
1364 1459 5.750067 CCGTTGTTGTAGTAGTAGTTGTTGT 59.250 40.000 0.00 0.00 0.00 3.32
1365 1460 5.978919 TCCGTTGTTGTAGTAGTAGTTGTTG 59.021 40.000 0.00 0.00 0.00 3.33
1366 1461 6.147864 TCCGTTGTTGTAGTAGTAGTTGTT 57.852 37.500 0.00 0.00 0.00 2.83
1367 1462 5.766222 CTCCGTTGTTGTAGTAGTAGTTGT 58.234 41.667 0.00 0.00 0.00 3.32
1368 1463 4.620184 GCTCCGTTGTTGTAGTAGTAGTTG 59.380 45.833 0.00 0.00 0.00 3.16
1369 1464 4.279169 TGCTCCGTTGTTGTAGTAGTAGTT 59.721 41.667 0.00 0.00 0.00 2.24
1584 1700 6.796785 ACAAATATTTGAAGGGCAGCTATT 57.203 33.333 30.18 4.50 40.55 1.73
2098 2247 1.152226 GAGGGGATGGATCGGAGGT 60.152 63.158 0.00 0.00 0.00 3.85
2500 2649 5.433051 AGGGATTCCTACTCATCCATTTCAA 59.567 40.000 2.01 0.00 42.75 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.