Multiple sequence alignment - TraesCS7B01G430900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G430900 chr7B 100.000 6612 0 0 1 6612 699195649 699189038 0.000000e+00 12211.0
1 TraesCS7B01G430900 chr7B 90.909 1540 91 27 5088 6612 694446129 694444624 0.000000e+00 2023.0
2 TraesCS7B01G430900 chr7B 90.940 1457 74 20 1319 2751 694497573 694498995 0.000000e+00 1906.0
3 TraesCS7B01G430900 chr7B 87.946 1402 146 13 3424 4807 694447816 694446420 0.000000e+00 1631.0
4 TraesCS7B01G430900 chr7B 88.350 1236 116 18 1711 2937 697285348 697286564 0.000000e+00 1459.0
5 TraesCS7B01G430900 chr7B 97.097 310 9 0 2749 3058 694449130 694448821 2.110000e-144 523.0
6 TraesCS7B01G430900 chr7B 78.071 757 147 15 4042 4788 697287190 697287937 1.680000e-125 460.0
7 TraesCS7B01G430900 chr7B 89.139 267 15 4 995 1258 693289767 693290022 2.970000e-83 320.0
8 TraesCS7B01G430900 chr7B 84.722 288 23 16 590 857 694521806 694521520 1.090000e-67 268.0
9 TraesCS7B01G430900 chr7B 89.908 109 7 4 3019 3125 699192525 699192631 3.220000e-28 137.0
10 TraesCS7B01G430900 chr7B 93.478 46 1 1 3069 3114 694448494 694448451 4.280000e-07 67.6
11 TraesCS7B01G430900 chr7D 95.916 2767 82 12 3153 5905 608206439 608203690 0.000000e+00 4455.0
12 TraesCS7B01G430900 chr7D 93.664 2178 94 17 921 3068 514901305 514899142 0.000000e+00 3217.0
13 TraesCS7B01G430900 chr7D 92.828 2175 102 24 921 3065 610479943 610482093 0.000000e+00 3103.0
14 TraesCS7B01G430900 chr7D 92.081 2134 99 26 878 2979 608208871 608206776 0.000000e+00 2940.0
15 TraesCS7B01G430900 chr7D 92.542 1542 80 23 5088 6612 514896811 514895288 0.000000e+00 2178.0
16 TraesCS7B01G430900 chr7D 90.187 1549 77 30 5088 6612 610484252 610485749 0.000000e+00 1949.0
17 TraesCS7B01G430900 chr7D 89.149 1410 125 16 3420 4807 610482558 610483961 0.000000e+00 1731.0
18 TraesCS7B01G430900 chr7D 88.185 1405 135 19 3415 4807 514898486 514897101 0.000000e+00 1646.0
19 TraesCS7B01G430900 chr7D 97.379 496 12 1 6118 6612 608203646 608203151 0.000000e+00 843.0
20 TraesCS7B01G430900 chr7D 87.500 336 39 3 1 335 255409302 255408969 1.040000e-102 385.0
21 TraesCS7B01G430900 chr7D 88.073 218 7 3 648 859 514901498 514901294 2.380000e-59 241.0
22 TraesCS7B01G430900 chr7D 83.045 289 15 18 588 854 608209204 608208928 1.430000e-56 231.0
23 TraesCS7B01G430900 chr7D 82.911 158 17 7 348 495 195812847 195813004 4.160000e-27 134.0
24 TraesCS7B01G430900 chr7D 96.154 52 2 0 2876 2927 514899138 514899087 1.180000e-12 86.1
25 TraesCS7B01G430900 chr7D 95.833 48 0 1 3069 3116 610482149 610482194 7.110000e-10 76.8
26 TraesCS7B01G430900 chr7D 97.674 43 1 0 3074 3116 610481950 610481992 2.560000e-09 75.0
27 TraesCS7B01G430900 chr7D 100.000 34 0 0 3069 3102 514899089 514899056 5.540000e-06 63.9
28 TraesCS7B01G430900 chr7D 91.111 45 0 3 3025 3068 610482196 610482155 2.580000e-04 58.4
29 TraesCS7B01G430900 chrUn 96.104 2464 80 7 4163 6612 77468065 77465604 0.000000e+00 4004.0
30 TraesCS7B01G430900 chrUn 89.951 1622 103 39 669 2260 77510402 77508811 0.000000e+00 2037.0
31 TraesCS7B01G430900 chrUn 90.868 1544 99 25 5088 6612 77504718 77503198 0.000000e+00 2032.0
32 TraesCS7B01G430900 chrUn 94.962 1191 50 5 1566 2755 77470815 77469634 0.000000e+00 1858.0
33 TraesCS7B01G430900 chrUn 86.171 1345 132 25 3483 4807 77506319 77505009 0.000000e+00 1404.0
34 TraesCS7B01G430900 chrUn 96.864 829 12 4 3113 3933 77468896 77468074 0.000000e+00 1375.0
35 TraesCS7B01G430900 chrUn 93.919 592 32 3 873 1463 77471461 77470873 0.000000e+00 891.0
36 TraesCS7B01G430900 chrUn 94.831 503 22 4 2568 3068 77507367 77506867 0.000000e+00 782.0
37 TraesCS7B01G430900 chrUn 96.997 333 10 0 2779 3111 77469640 77469308 1.610000e-155 560.0
38 TraesCS7B01G430900 chrUn 82.900 269 27 13 600 854 77471774 77471511 2.400000e-54 224.0
39 TraesCS7B01G430900 chrUn 90.526 95 6 3 3032 3125 77469308 77469400 9.000000e-24 122.0
40 TraesCS7B01G430900 chrUn 96.154 52 2 0 2876 2927 77506863 77506812 1.180000e-12 86.1
41 TraesCS7B01G430900 chrUn 95.238 42 2 0 3075 3116 77507013 77506972 4.280000e-07 67.6
42 TraesCS7B01G430900 chr7A 93.810 1971 86 11 929 2882 700286823 700284872 0.000000e+00 2931.0
43 TraesCS7B01G430900 chr7A 93.284 1891 81 14 1127 3000 700329136 700327275 0.000000e+00 2747.0
44 TraesCS7B01G430900 chr7A 91.403 1547 84 26 5088 6612 700264631 700263112 0.000000e+00 2074.0
45 TraesCS7B01G430900 chr7A 89.925 1459 111 24 5150 6597 700279862 700278429 0.000000e+00 1847.0
46 TraesCS7B01G430900 chr7A 89.650 1459 115 22 5150 6597 700284173 700282740 0.000000e+00 1825.0
47 TraesCS7B01G430900 chr7A 94.074 540 31 1 929 1467 700329682 700329143 0.000000e+00 819.0
48 TraesCS7B01G430900 chr7A 88.372 645 70 5 4163 4807 700265574 700264935 0.000000e+00 771.0
49 TraesCS7B01G430900 chr7A 84.353 703 86 16 3191 3878 699903235 699903928 0.000000e+00 667.0
50 TraesCS7B01G430900 chr7A 87.500 424 34 6 5074 5495 699906693 699907099 7.760000e-129 472.0
51 TraesCS7B01G430900 chr7A 84.200 481 48 8 3638 4105 700266207 700265742 6.090000e-120 442.0
52 TraesCS7B01G430900 chr7A 93.478 230 11 4 3120 3348 700284399 700284173 8.210000e-89 339.0
53 TraesCS7B01G430900 chr7A 92.889 225 11 5 3126 3348 700280083 700279862 8.270000e-84 322.0
54 TraesCS7B01G430900 chr7A 77.255 510 87 19 4163 4659 699904332 699904825 8.450000e-69 272.0
55 TraesCS7B01G430900 chr7A 80.556 216 15 18 633 847 700287012 700286823 2.490000e-29 141.0
56 TraesCS7B01G430900 chr7A 86.726 113 9 3 4941 5047 699906581 699906693 3.240000e-23 121.0
57 TraesCS7B01G430900 chr7A 81.013 158 20 5 348 495 297086379 297086536 4.190000e-22 117.0
58 TraesCS7B01G430900 chr7A 92.771 83 3 3 633 714 700329849 700329769 4.190000e-22 117.0
59 TraesCS7B01G430900 chr7A 95.652 46 2 0 4803 4848 699906383 699906428 2.560000e-09 75.0
60 TraesCS7B01G430900 chr4A 92.026 1668 108 13 1419 3065 662072299 662073962 0.000000e+00 2320.0
61 TraesCS7B01G430900 chr4A 90.149 1543 98 24 5088 6612 662076368 662077874 0.000000e+00 1958.0
62 TraesCS7B01G430900 chr4A 88.244 689 56 12 3437 4112 662074545 662075221 0.000000e+00 800.0
63 TraesCS7B01G430900 chr4A 87.611 678 81 3 4130 4807 662075403 662076077 0.000000e+00 784.0
64 TraesCS7B01G430900 chr4A 87.141 661 61 19 881 1531 662071342 662071988 0.000000e+00 728.0
65 TraesCS7B01G430900 chr4A 88.350 206 19 4 3114 3318 662074175 662074376 6.620000e-60 243.0
66 TraesCS7B01G430900 chr4A 81.646 158 19 4 348 495 314653930 314653773 9.000000e-24 122.0
67 TraesCS7B01G430900 chr4A 97.674 43 1 0 3074 3116 662073818 662073860 2.560000e-09 75.0
68 TraesCS7B01G430900 chr5D 87.966 349 37 2 1 349 539890050 539890393 2.220000e-109 407.0
69 TraesCS7B01G430900 chr5D 88.589 333 36 2 3 334 303643443 303643112 2.870000e-108 403.0
70 TraesCS7B01G430900 chr5D 85.443 158 13 5 348 495 245124210 245124053 8.880000e-34 156.0
71 TraesCS7B01G430900 chr5B 87.679 349 39 2 1 349 682121568 682121912 2.870000e-108 403.0
72 TraesCS7B01G430900 chr5B 87.826 345 39 2 5 349 682068768 682069109 1.030000e-107 401.0
73 TraesCS7B01G430900 chr5B 87.608 347 39 2 3 349 682050480 682050822 3.710000e-107 399.0
74 TraesCS7B01G430900 chr5B 87.106 349 41 2 1 349 682083526 682083870 6.220000e-105 392.0
75 TraesCS7B01G430900 chr5B 87.613 331 40 1 1 331 187708083 187708412 3.740000e-102 383.0
76 TraesCS7B01G430900 chr4D 88.024 334 39 1 1 334 384851399 384851067 1.730000e-105 394.0
77 TraesCS7B01G430900 chr2B 84.076 157 15 4 348 495 208672764 208672919 6.910000e-30 143.0
78 TraesCS7B01G430900 chr2B 81.761 159 12 4 348 495 566068540 566068692 4.190000e-22 117.0
79 TraesCS7B01G430900 chr2D 82.911 158 17 7 348 495 292499304 292499147 4.160000e-27 134.0
80 TraesCS7B01G430900 chr3A 80.503 159 20 3 348 495 334242987 334243145 1.950000e-20 111.0
81 TraesCS7B01G430900 chr5A 78.481 158 24 3 348 495 242626055 242625898 1.960000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G430900 chr7B 699189038 699195649 6611 True 12211.000000 12211 100.000000 1 6612 1 chr7B.!!$R2 6611
1 TraesCS7B01G430900 chr7B 694497573 694498995 1422 False 1906.000000 1906 90.940000 1319 2751 1 chr7B.!!$F2 1432
2 TraesCS7B01G430900 chr7B 694444624 694449130 4506 True 1061.150000 2023 92.357500 2749 6612 4 chr7B.!!$R3 3863
3 TraesCS7B01G430900 chr7B 697285348 697287937 2589 False 959.500000 1459 83.210500 1711 4788 2 chr7B.!!$F4 3077
4 TraesCS7B01G430900 chr7D 608203151 608209204 6053 True 2117.250000 4455 92.105250 588 6612 4 chr7D.!!$R4 6024
5 TraesCS7B01G430900 chr7D 610479943 610485749 5806 False 1386.960000 3103 93.134200 921 6612 5 chr7D.!!$F2 5691
6 TraesCS7B01G430900 chr7D 514895288 514901498 6210 True 1238.666667 3217 93.103000 648 6612 6 chr7D.!!$R3 5964
7 TraesCS7B01G430900 chrUn 77465604 77471774 6170 True 1485.333333 4004 93.624333 600 6612 6 chrUn.!!$R1 6012
8 TraesCS7B01G430900 chrUn 77503198 77510402 7204 True 1068.116667 2037 92.202167 669 6612 6 chrUn.!!$R2 5943
9 TraesCS7B01G430900 chr7A 700278429 700287012 8583 True 1234.166667 2931 90.051333 633 6597 6 chr7A.!!$R2 5964
10 TraesCS7B01G430900 chr7A 700327275 700329849 2574 True 1227.666667 2747 93.376333 633 3000 3 chr7A.!!$R3 2367
11 TraesCS7B01G430900 chr7A 700263112 700266207 3095 True 1095.666667 2074 87.991667 3638 6612 3 chr7A.!!$R1 2974
12 TraesCS7B01G430900 chr7A 699903235 699907099 3864 False 321.400000 667 86.297200 3191 5495 5 chr7A.!!$F2 2304
13 TraesCS7B01G430900 chr4A 662071342 662077874 6532 False 986.857143 2320 90.170714 881 6612 7 chr4A.!!$F1 5731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 411 0.039911 AGTCTCGAGGGGTAGTTGCT 59.960 55.0 13.56 0.00 0.00 3.91 F
460 461 0.169009 GCAATGGAGGCGAGTTGTTC 59.831 55.0 0.00 0.00 0.00 3.18 F
484 485 0.179000 GGGTCGAAGCATGGATCAGT 59.821 55.0 0.00 0.00 0.00 3.41 F
501 502 0.391661 AGTGCCGCTGACAATTCGAT 60.392 50.0 0.00 0.00 0.00 3.59 F
900 988 0.524392 CGTCTAGCAAGGTGAGCTCG 60.524 60.0 9.64 0.00 42.32 5.03 F
2548 3576 0.703488 TTGGAGTTGGCCATGGATCA 59.297 50.0 18.40 10.21 37.86 2.92 F
4396 7645 0.907704 TTCCACTCGGGCATGGTAGT 60.908 55.0 0.00 0.00 37.27 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 2739 1.740380 CGTAGTGCCAAGGTCATCCTG 60.740 57.143 0.00 0.0 44.35 3.86 R
2458 3486 1.167851 GTGTGGCATTGAGCTTAGCA 58.832 50.000 7.07 0.0 44.79 3.49 R
2515 3543 4.142182 CCAACTCCAATTGTCAACACTTGT 60.142 41.667 4.43 0.0 35.53 3.16 R
2548 3576 0.980423 GCTCTCCAACCTCAACCTCT 59.020 55.000 0.00 0.0 0.00 3.69 R
2931 4991 1.067565 TGATGGTCTCGACAAGTCTGC 60.068 52.381 0.00 0.0 0.00 4.26 R
4540 7792 0.320771 GCAGAGGCCAAGAAACGAGA 60.321 55.000 5.01 0.0 0.00 4.04 R
5705 14861 0.692476 TGGACAGGATGAACCCACAG 59.308 55.000 0.00 0.0 39.69 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.971726 TCCGTATGTAGTCTATGTTGGAAT 57.028 37.500 0.00 0.00 0.00 3.01
24 25 7.356089 TCCGTATGTAGTCTATGTTGGAATT 57.644 36.000 0.00 0.00 0.00 2.17
25 26 7.788026 TCCGTATGTAGTCTATGTTGGAATTT 58.212 34.615 0.00 0.00 0.00 1.82
26 27 7.924412 TCCGTATGTAGTCTATGTTGGAATTTC 59.076 37.037 0.00 0.00 0.00 2.17
27 28 7.926555 CCGTATGTAGTCTATGTTGGAATTTCT 59.073 37.037 0.00 0.00 0.00 2.52
28 29 9.961265 CGTATGTAGTCTATGTTGGAATTTCTA 57.039 33.333 0.00 0.00 0.00 2.10
68 69 9.996554 TTAGGAACATATGGTGTATAAGACATG 57.003 33.333 7.80 0.00 41.14 3.21
69 70 7.453393 AGGAACATATGGTGTATAAGACATGG 58.547 38.462 7.80 0.00 41.14 3.66
70 71 6.655003 GGAACATATGGTGTATAAGACATGGG 59.345 42.308 7.80 0.00 41.14 4.00
71 72 7.387265 AACATATGGTGTATAAGACATGGGA 57.613 36.000 7.80 0.00 41.14 4.37
72 73 7.574021 ACATATGGTGTATAAGACATGGGAT 57.426 36.000 7.80 0.00 41.14 3.85
73 74 7.397221 ACATATGGTGTATAAGACATGGGATG 58.603 38.462 7.80 0.00 41.14 3.51
74 75 4.085357 TGGTGTATAAGACATGGGATGC 57.915 45.455 0.00 0.00 41.14 3.91
75 76 3.457749 TGGTGTATAAGACATGGGATGCA 59.542 43.478 0.00 0.00 41.14 3.96
76 77 4.104579 TGGTGTATAAGACATGGGATGCAT 59.895 41.667 0.00 0.00 41.14 3.96
77 78 4.697352 GGTGTATAAGACATGGGATGCATC 59.303 45.833 18.81 18.81 41.14 3.91
78 79 5.513788 GGTGTATAAGACATGGGATGCATCT 60.514 44.000 25.28 5.84 41.14 2.90
79 80 6.295859 GGTGTATAAGACATGGGATGCATCTA 60.296 42.308 25.28 15.41 41.14 1.98
80 81 7.161404 GTGTATAAGACATGGGATGCATCTAA 58.839 38.462 25.28 14.52 41.14 2.10
81 82 7.118390 GTGTATAAGACATGGGATGCATCTAAC 59.882 40.741 25.28 16.14 41.14 2.34
82 83 3.498774 AGACATGGGATGCATCTAACC 57.501 47.619 25.28 18.29 0.00 2.85
83 84 3.051581 AGACATGGGATGCATCTAACCT 58.948 45.455 25.28 12.44 0.00 3.50
84 85 3.072184 AGACATGGGATGCATCTAACCTC 59.928 47.826 25.28 14.41 0.00 3.85
85 86 2.224378 ACATGGGATGCATCTAACCTCG 60.224 50.000 25.28 14.81 0.00 4.63
86 87 1.788229 TGGGATGCATCTAACCTCGA 58.212 50.000 25.28 2.96 0.00 4.04
87 88 1.412710 TGGGATGCATCTAACCTCGAC 59.587 52.381 25.28 6.00 0.00 4.20
88 89 1.603172 GGGATGCATCTAACCTCGACG 60.603 57.143 25.28 0.00 0.00 5.12
89 90 1.337071 GGATGCATCTAACCTCGACGA 59.663 52.381 25.28 0.00 0.00 4.20
90 91 2.386249 GATGCATCTAACCTCGACGAC 58.614 52.381 19.70 0.00 0.00 4.34
91 92 1.170442 TGCATCTAACCTCGACGACA 58.830 50.000 0.00 0.00 0.00 4.35
92 93 1.542472 TGCATCTAACCTCGACGACAA 59.458 47.619 0.00 0.00 0.00 3.18
93 94 2.029739 TGCATCTAACCTCGACGACAAA 60.030 45.455 0.00 0.00 0.00 2.83
94 95 2.344741 GCATCTAACCTCGACGACAAAC 59.655 50.000 0.00 0.00 0.00 2.93
95 96 3.571571 CATCTAACCTCGACGACAAACA 58.428 45.455 0.00 0.00 0.00 2.83
96 97 3.713858 TCTAACCTCGACGACAAACAA 57.286 42.857 0.00 0.00 0.00 2.83
97 98 3.374745 TCTAACCTCGACGACAAACAAC 58.625 45.455 0.00 0.00 0.00 3.32
98 99 2.012937 AACCTCGACGACAAACAACA 57.987 45.000 0.00 0.00 0.00 3.33
99 100 2.012937 ACCTCGACGACAAACAACAA 57.987 45.000 0.00 0.00 0.00 2.83
100 101 1.662122 ACCTCGACGACAAACAACAAC 59.338 47.619 0.00 0.00 0.00 3.32
101 102 1.661617 CCTCGACGACAAACAACAACA 59.338 47.619 0.00 0.00 0.00 3.33
102 103 2.286833 CCTCGACGACAAACAACAACAT 59.713 45.455 0.00 0.00 0.00 2.71
103 104 3.531982 CTCGACGACAAACAACAACATC 58.468 45.455 0.00 0.00 0.00 3.06
104 105 2.034423 TCGACGACAAACAACAACATCG 60.034 45.455 0.00 0.00 35.74 3.84
105 106 2.034076 GACGACAAACAACAACATCGC 58.966 47.619 0.00 0.00 32.95 4.58
106 107 1.268335 ACGACAAACAACAACATCGCC 60.268 47.619 0.00 0.00 32.95 5.54
107 108 1.002900 CGACAAACAACAACATCGCCT 60.003 47.619 0.00 0.00 0.00 5.52
108 109 2.222213 CGACAAACAACAACATCGCCTA 59.778 45.455 0.00 0.00 0.00 3.93
109 110 3.120338 CGACAAACAACAACATCGCCTAT 60.120 43.478 0.00 0.00 0.00 2.57
110 111 4.403453 GACAAACAACAACATCGCCTATC 58.597 43.478 0.00 0.00 0.00 2.08
111 112 3.120338 ACAAACAACAACATCGCCTATCG 60.120 43.478 0.00 0.00 40.15 2.92
112 113 2.380084 ACAACAACATCGCCTATCGT 57.620 45.000 0.00 0.00 39.67 3.73
113 114 3.513680 ACAACAACATCGCCTATCGTA 57.486 42.857 0.00 0.00 39.67 3.43
114 115 3.444916 ACAACAACATCGCCTATCGTAG 58.555 45.455 0.00 0.00 39.67 3.51
115 116 2.135664 ACAACATCGCCTATCGTAGC 57.864 50.000 0.00 0.00 39.67 3.58
116 117 1.269621 ACAACATCGCCTATCGTAGCC 60.270 52.381 0.00 0.00 39.67 3.93
117 118 0.317479 AACATCGCCTATCGTAGCCC 59.683 55.000 0.00 0.00 39.67 5.19
118 119 0.539901 ACATCGCCTATCGTAGCCCT 60.540 55.000 0.00 0.00 39.67 5.19
119 120 0.109086 CATCGCCTATCGTAGCCCTG 60.109 60.000 0.00 0.00 39.67 4.45
120 121 0.539901 ATCGCCTATCGTAGCCCTGT 60.540 55.000 0.00 0.00 39.67 4.00
121 122 1.007271 CGCCTATCGTAGCCCTGTG 60.007 63.158 0.00 0.00 0.00 3.66
122 123 1.735376 CGCCTATCGTAGCCCTGTGT 61.735 60.000 0.00 0.00 0.00 3.72
123 124 1.325355 GCCTATCGTAGCCCTGTGTA 58.675 55.000 0.00 0.00 0.00 2.90
124 125 1.684983 GCCTATCGTAGCCCTGTGTAA 59.315 52.381 0.00 0.00 0.00 2.41
125 126 2.288273 GCCTATCGTAGCCCTGTGTAAG 60.288 54.545 0.00 0.00 0.00 2.34
126 127 2.957006 CCTATCGTAGCCCTGTGTAAGT 59.043 50.000 0.00 0.00 0.00 2.24
127 128 4.139786 CCTATCGTAGCCCTGTGTAAGTA 58.860 47.826 0.00 0.00 0.00 2.24
128 129 4.765856 CCTATCGTAGCCCTGTGTAAGTAT 59.234 45.833 0.00 0.00 0.00 2.12
129 130 4.585955 ATCGTAGCCCTGTGTAAGTATG 57.414 45.455 0.00 0.00 0.00 2.39
130 131 3.359033 TCGTAGCCCTGTGTAAGTATGT 58.641 45.455 0.00 0.00 0.00 2.29
131 132 3.129813 TCGTAGCCCTGTGTAAGTATGTG 59.870 47.826 0.00 0.00 0.00 3.21
132 133 3.129813 CGTAGCCCTGTGTAAGTATGTGA 59.870 47.826 0.00 0.00 0.00 3.58
133 134 4.381185 CGTAGCCCTGTGTAAGTATGTGAA 60.381 45.833 0.00 0.00 0.00 3.18
134 135 4.634012 AGCCCTGTGTAAGTATGTGAAA 57.366 40.909 0.00 0.00 0.00 2.69
135 136 4.980573 AGCCCTGTGTAAGTATGTGAAAA 58.019 39.130 0.00 0.00 0.00 2.29
136 137 5.570320 AGCCCTGTGTAAGTATGTGAAAAT 58.430 37.500 0.00 0.00 0.00 1.82
137 138 5.415701 AGCCCTGTGTAAGTATGTGAAAATG 59.584 40.000 0.00 0.00 0.00 2.32
138 139 5.640732 CCCTGTGTAAGTATGTGAAAATGC 58.359 41.667 0.00 0.00 0.00 3.56
139 140 5.182950 CCCTGTGTAAGTATGTGAAAATGCA 59.817 40.000 0.00 0.00 0.00 3.96
140 141 6.294453 CCCTGTGTAAGTATGTGAAAATGCAA 60.294 38.462 0.00 0.00 0.00 4.08
141 142 7.315142 CCTGTGTAAGTATGTGAAAATGCAAT 58.685 34.615 0.00 0.00 0.00 3.56
142 143 7.274033 CCTGTGTAAGTATGTGAAAATGCAATG 59.726 37.037 0.00 0.00 0.00 2.82
143 144 6.585702 TGTGTAAGTATGTGAAAATGCAATGC 59.414 34.615 0.00 0.00 0.00 3.56
144 145 6.808212 GTGTAAGTATGTGAAAATGCAATGCT 59.192 34.615 6.82 0.00 0.00 3.79
145 146 7.967854 GTGTAAGTATGTGAAAATGCAATGCTA 59.032 33.333 6.82 0.00 0.00 3.49
146 147 8.518702 TGTAAGTATGTGAAAATGCAATGCTAA 58.481 29.630 6.82 0.00 0.00 3.09
147 148 7.816945 AAGTATGTGAAAATGCAATGCTAAC 57.183 32.000 6.82 0.00 0.00 2.34
148 149 7.161773 AGTATGTGAAAATGCAATGCTAACT 57.838 32.000 6.82 0.00 0.00 2.24
149 150 8.279970 AGTATGTGAAAATGCAATGCTAACTA 57.720 30.769 6.82 0.00 0.00 2.24
150 151 8.184192 AGTATGTGAAAATGCAATGCTAACTAC 58.816 33.333 6.82 0.00 0.00 2.73
151 152 6.324561 TGTGAAAATGCAATGCTAACTACA 57.675 33.333 6.82 2.47 0.00 2.74
152 153 6.743110 TGTGAAAATGCAATGCTAACTACAA 58.257 32.000 6.82 0.00 0.00 2.41
153 154 6.640499 TGTGAAAATGCAATGCTAACTACAAC 59.360 34.615 6.82 0.00 0.00 3.32
154 155 6.640499 GTGAAAATGCAATGCTAACTACAACA 59.360 34.615 6.82 0.00 0.00 3.33
155 156 7.329226 GTGAAAATGCAATGCTAACTACAACAT 59.671 33.333 6.82 0.00 0.00 2.71
156 157 7.328982 TGAAAATGCAATGCTAACTACAACATG 59.671 33.333 6.82 0.00 0.00 3.21
157 158 4.700268 TGCAATGCTAACTACAACATGG 57.300 40.909 6.82 0.00 0.00 3.66
158 159 4.078537 TGCAATGCTAACTACAACATGGT 58.921 39.130 6.82 0.00 0.00 3.55
159 160 4.522405 TGCAATGCTAACTACAACATGGTT 59.478 37.500 6.82 0.00 35.85 3.67
160 161 5.707764 TGCAATGCTAACTACAACATGGTTA 59.292 36.000 6.82 0.00 33.40 2.85
161 162 6.207614 TGCAATGCTAACTACAACATGGTTAA 59.792 34.615 6.82 0.00 34.19 2.01
162 163 6.526674 GCAATGCTAACTACAACATGGTTAAC 59.473 38.462 0.00 0.00 34.19 2.01
163 164 7.589395 CAATGCTAACTACAACATGGTTAACA 58.411 34.615 8.10 0.00 35.56 2.41
164 165 7.938140 ATGCTAACTACAACATGGTTAACAT 57.062 32.000 8.10 0.26 36.66 2.71
165 166 7.753309 TGCTAACTACAACATGGTTAACATT 57.247 32.000 8.10 0.00 37.84 2.71
166 167 7.812648 TGCTAACTACAACATGGTTAACATTC 58.187 34.615 8.10 0.00 37.84 2.67
167 168 7.445707 TGCTAACTACAACATGGTTAACATTCA 59.554 33.333 8.10 0.00 37.84 2.57
168 169 7.749126 GCTAACTACAACATGGTTAACATTCAC 59.251 37.037 8.10 0.00 37.84 3.18
169 170 6.569179 ACTACAACATGGTTAACATTCACC 57.431 37.500 8.10 0.00 37.84 4.02
171 172 5.860941 ACAACATGGTTAACATTCACCAA 57.139 34.783 8.10 0.00 46.29 3.67
172 173 6.227298 ACAACATGGTTAACATTCACCAAA 57.773 33.333 8.10 0.00 46.29 3.28
173 174 6.644347 ACAACATGGTTAACATTCACCAAAA 58.356 32.000 8.10 0.00 46.29 2.44
174 175 7.106239 ACAACATGGTTAACATTCACCAAAAA 58.894 30.769 8.10 0.00 46.29 1.94
215 216 5.876651 TGGCAACATCTATACTGACATCT 57.123 39.130 0.00 0.00 46.17 2.90
216 217 6.239217 TGGCAACATCTATACTGACATCTT 57.761 37.500 0.00 0.00 46.17 2.40
217 218 6.283694 TGGCAACATCTATACTGACATCTTC 58.716 40.000 0.00 0.00 46.17 2.87
218 219 6.127083 TGGCAACATCTATACTGACATCTTCA 60.127 38.462 0.00 0.00 46.17 3.02
219 220 6.933521 GGCAACATCTATACTGACATCTTCAT 59.066 38.462 0.00 0.00 32.17 2.57
220 221 7.443575 GGCAACATCTATACTGACATCTTCATT 59.556 37.037 0.00 0.00 32.17 2.57
221 222 8.281194 GCAACATCTATACTGACATCTTCATTG 58.719 37.037 0.00 0.00 32.17 2.82
222 223 7.959689 ACATCTATACTGACATCTTCATTGC 57.040 36.000 0.00 0.00 32.17 3.56
223 224 6.644181 ACATCTATACTGACATCTTCATTGCG 59.356 38.462 0.00 0.00 32.17 4.85
224 225 6.391227 TCTATACTGACATCTTCATTGCGA 57.609 37.500 0.00 0.00 32.17 5.10
225 226 6.805713 TCTATACTGACATCTTCATTGCGAA 58.194 36.000 0.00 0.00 32.17 4.70
226 227 7.264947 TCTATACTGACATCTTCATTGCGAAA 58.735 34.615 0.00 0.00 32.17 3.46
227 228 4.675190 ACTGACATCTTCATTGCGAAAG 57.325 40.909 0.00 0.00 32.17 2.62
228 229 4.318332 ACTGACATCTTCATTGCGAAAGA 58.682 39.130 0.00 0.00 32.17 2.52
229 230 4.391216 ACTGACATCTTCATTGCGAAAGAG 59.609 41.667 0.00 0.00 32.17 2.85
230 231 4.318332 TGACATCTTCATTGCGAAAGAGT 58.682 39.130 0.00 0.00 31.71 3.24
231 232 5.478407 TGACATCTTCATTGCGAAAGAGTA 58.522 37.500 0.00 0.00 31.71 2.59
232 233 5.931724 TGACATCTTCATTGCGAAAGAGTAA 59.068 36.000 0.00 0.00 31.71 2.24
233 234 6.128553 TGACATCTTCATTGCGAAAGAGTAAC 60.129 38.462 0.00 0.00 31.71 2.50
234 235 5.700832 ACATCTTCATTGCGAAAGAGTAACA 59.299 36.000 0.00 0.00 31.71 2.41
235 236 5.591643 TCTTCATTGCGAAAGAGTAACAC 57.408 39.130 0.00 0.00 31.71 3.32
236 237 4.149922 TCTTCATTGCGAAAGAGTAACACG 59.850 41.667 0.00 0.00 31.71 4.49
237 238 3.386486 TCATTGCGAAAGAGTAACACGT 58.614 40.909 0.00 0.00 0.00 4.49
238 239 3.805422 TCATTGCGAAAGAGTAACACGTT 59.195 39.130 0.00 0.00 0.00 3.99
239 240 4.983538 TCATTGCGAAAGAGTAACACGTTA 59.016 37.500 0.00 0.00 0.00 3.18
240 241 4.959631 TTGCGAAAGAGTAACACGTTAG 57.040 40.909 0.00 0.00 0.00 2.34
241 242 3.968649 TGCGAAAGAGTAACACGTTAGT 58.031 40.909 0.00 0.00 0.00 2.24
242 243 5.107109 TGCGAAAGAGTAACACGTTAGTA 57.893 39.130 0.00 0.00 0.00 1.82
243 244 5.518812 TGCGAAAGAGTAACACGTTAGTAA 58.481 37.500 0.00 0.00 0.00 2.24
244 245 5.976534 TGCGAAAGAGTAACACGTTAGTAAA 59.023 36.000 0.00 0.00 0.00 2.01
245 246 6.142798 TGCGAAAGAGTAACACGTTAGTAAAG 59.857 38.462 0.00 0.00 0.00 1.85
246 247 6.399354 GCGAAAGAGTAACACGTTAGTAAAGG 60.399 42.308 0.88 0.00 0.00 3.11
247 248 6.088616 CGAAAGAGTAACACGTTAGTAAAGGG 59.911 42.308 0.00 0.00 0.00 3.95
248 249 6.655078 AAGAGTAACACGTTAGTAAAGGGA 57.345 37.500 5.01 0.00 0.00 4.20
249 250 6.018589 AGAGTAACACGTTAGTAAAGGGAC 57.981 41.667 5.01 0.00 0.00 4.46
250 251 4.798574 AGTAACACGTTAGTAAAGGGACG 58.201 43.478 5.01 0.00 41.00 4.79
251 252 2.730550 ACACGTTAGTAAAGGGACGG 57.269 50.000 5.01 0.00 39.63 4.79
252 253 2.238521 ACACGTTAGTAAAGGGACGGA 58.761 47.619 5.01 0.00 39.63 4.69
253 254 2.827921 ACACGTTAGTAAAGGGACGGAT 59.172 45.455 5.01 0.00 39.63 4.18
254 255 3.259123 ACACGTTAGTAAAGGGACGGATT 59.741 43.478 5.01 0.00 39.63 3.01
255 256 4.462483 ACACGTTAGTAAAGGGACGGATTA 59.538 41.667 5.01 0.00 39.63 1.75
256 257 5.047377 ACACGTTAGTAAAGGGACGGATTAA 60.047 40.000 5.01 0.00 39.63 1.40
257 258 5.868801 CACGTTAGTAAAGGGACGGATTAAA 59.131 40.000 0.88 0.00 39.63 1.52
258 259 6.368516 CACGTTAGTAAAGGGACGGATTAAAA 59.631 38.462 0.88 0.00 39.63 1.52
259 260 6.934083 ACGTTAGTAAAGGGACGGATTAAAAA 59.066 34.615 0.88 0.00 39.63 1.94
303 304 9.375974 ACTACAACAGATAACCTATTATAGCCA 57.624 33.333 0.00 0.00 30.77 4.75
306 307 9.507329 ACAACAGATAACCTATTATAGCCATTG 57.493 33.333 0.00 0.00 30.77 2.82
307 308 9.725019 CAACAGATAACCTATTATAGCCATTGA 57.275 33.333 0.00 0.00 30.77 2.57
316 317 9.726438 ACCTATTATAGCCATTGAAACTGATAC 57.274 33.333 0.00 0.00 0.00 2.24
317 318 9.950496 CCTATTATAGCCATTGAAACTGATACT 57.050 33.333 0.00 0.00 0.00 2.12
325 326 9.905713 AGCCATTGAAACTGATACTAATAGAAA 57.094 29.630 0.00 0.00 0.00 2.52
348 349 9.897744 GAAATGAAACTGATACTGATTGAAACA 57.102 29.630 0.00 0.00 0.00 2.83
350 351 9.683069 AATGAAACTGATACTGATTGAAACAAC 57.317 29.630 0.00 0.00 0.00 3.32
351 352 8.450578 TGAAACTGATACTGATTGAAACAACT 57.549 30.769 0.00 0.00 0.00 3.16
352 353 8.344831 TGAAACTGATACTGATTGAAACAACTG 58.655 33.333 0.00 0.00 0.00 3.16
353 354 6.808008 ACTGATACTGATTGAAACAACTGG 57.192 37.500 0.00 0.00 0.00 4.00
354 355 6.299141 ACTGATACTGATTGAAACAACTGGT 58.701 36.000 0.00 0.00 0.00 4.00
355 356 7.450074 ACTGATACTGATTGAAACAACTGGTA 58.550 34.615 0.00 0.00 0.00 3.25
356 357 8.103305 ACTGATACTGATTGAAACAACTGGTAT 58.897 33.333 0.00 0.00 0.00 2.73
357 358 9.599866 CTGATACTGATTGAAACAACTGGTATA 57.400 33.333 0.00 0.00 0.00 1.47
358 359 9.952030 TGATACTGATTGAAACAACTGGTATAA 57.048 29.630 0.00 0.00 0.00 0.98
360 361 9.959721 ATACTGATTGAAACAACTGGTATAAGT 57.040 29.630 0.00 0.00 0.00 2.24
362 363 9.787435 ACTGATTGAAACAACTGGTATAAGTAA 57.213 29.630 0.00 0.00 0.00 2.24
372 373 9.436957 ACAACTGGTATAAGTAAGATTCAACTG 57.563 33.333 0.00 0.00 0.00 3.16
373 374 9.653287 CAACTGGTATAAGTAAGATTCAACTGA 57.347 33.333 0.00 0.00 0.00 3.41
395 396 9.036980 ACTGATCAGTTTATACTTGGTAAGTCT 57.963 33.333 22.89 0.00 39.69 3.24
396 397 9.522804 CTGATCAGTTTATACTTGGTAAGTCTC 57.477 37.037 14.95 0.00 41.77 3.36
397 398 8.188799 TGATCAGTTTATACTTGGTAAGTCTCG 58.811 37.037 0.00 0.00 41.77 4.04
398 399 7.692460 TCAGTTTATACTTGGTAAGTCTCGA 57.308 36.000 0.00 0.00 41.77 4.04
399 400 7.759465 TCAGTTTATACTTGGTAAGTCTCGAG 58.241 38.462 5.93 5.93 41.77 4.04
400 401 6.973474 CAGTTTATACTTGGTAAGTCTCGAGG 59.027 42.308 13.56 0.00 41.77 4.63
401 402 6.096564 AGTTTATACTTGGTAAGTCTCGAGGG 59.903 42.308 13.56 0.00 41.77 4.30
402 403 1.558233 ACTTGGTAAGTCTCGAGGGG 58.442 55.000 13.56 0.00 37.02 4.79
403 404 1.203149 ACTTGGTAAGTCTCGAGGGGT 60.203 52.381 13.56 0.05 37.02 4.95
404 405 2.042162 ACTTGGTAAGTCTCGAGGGGTA 59.958 50.000 13.56 0.00 37.02 3.69
405 406 2.431954 TGGTAAGTCTCGAGGGGTAG 57.568 55.000 13.56 0.00 0.00 3.18
406 407 1.637553 TGGTAAGTCTCGAGGGGTAGT 59.362 52.381 13.56 0.00 0.00 2.73
407 408 2.042162 TGGTAAGTCTCGAGGGGTAGTT 59.958 50.000 13.56 4.91 0.00 2.24
408 409 2.426381 GGTAAGTCTCGAGGGGTAGTTG 59.574 54.545 13.56 0.00 0.00 3.16
409 410 0.896226 AAGTCTCGAGGGGTAGTTGC 59.104 55.000 13.56 0.00 0.00 4.17
410 411 0.039911 AGTCTCGAGGGGTAGTTGCT 59.960 55.000 13.56 0.00 0.00 3.91
411 412 0.173708 GTCTCGAGGGGTAGTTGCTG 59.826 60.000 13.56 0.00 0.00 4.41
412 413 0.970937 TCTCGAGGGGTAGTTGCTGG 60.971 60.000 13.56 0.00 0.00 4.85
413 414 1.961180 CTCGAGGGGTAGTTGCTGGG 61.961 65.000 3.91 0.00 0.00 4.45
414 415 1.987855 CGAGGGGTAGTTGCTGGGA 60.988 63.158 0.00 0.00 0.00 4.37
415 416 1.602771 GAGGGGTAGTTGCTGGGAC 59.397 63.158 0.00 0.00 0.00 4.46
416 417 1.151899 AGGGGTAGTTGCTGGGACA 60.152 57.895 0.00 0.00 0.00 4.02
417 418 1.002502 GGGGTAGTTGCTGGGACAC 60.003 63.158 0.00 0.00 0.00 3.67
418 419 1.489560 GGGGTAGTTGCTGGGACACT 61.490 60.000 0.00 0.00 0.00 3.55
419 420 0.400594 GGGTAGTTGCTGGGACACTT 59.599 55.000 0.00 0.00 0.00 3.16
420 421 1.610886 GGGTAGTTGCTGGGACACTTC 60.611 57.143 0.00 0.00 0.00 3.01
421 422 1.071699 GGTAGTTGCTGGGACACTTCA 59.928 52.381 0.00 0.00 0.00 3.02
422 423 2.290323 GGTAGTTGCTGGGACACTTCAT 60.290 50.000 0.00 0.00 0.00 2.57
423 424 3.055385 GGTAGTTGCTGGGACACTTCATA 60.055 47.826 0.00 0.00 0.00 2.15
424 425 4.384208 GGTAGTTGCTGGGACACTTCATAT 60.384 45.833 0.00 0.00 0.00 1.78
425 426 3.614092 AGTTGCTGGGACACTTCATATG 58.386 45.455 0.00 0.00 0.00 1.78
426 427 2.684881 GTTGCTGGGACACTTCATATGG 59.315 50.000 2.13 0.00 0.00 2.74
427 428 2.195727 TGCTGGGACACTTCATATGGA 58.804 47.619 2.13 0.00 0.00 3.41
428 429 2.779430 TGCTGGGACACTTCATATGGAT 59.221 45.455 2.13 0.00 0.00 3.41
429 430 3.973305 TGCTGGGACACTTCATATGGATA 59.027 43.478 2.13 0.00 0.00 2.59
430 431 4.411869 TGCTGGGACACTTCATATGGATAA 59.588 41.667 2.13 0.00 0.00 1.75
431 432 4.999950 GCTGGGACACTTCATATGGATAAG 59.000 45.833 2.13 2.06 0.00 1.73
432 433 5.221722 GCTGGGACACTTCATATGGATAAGA 60.222 44.000 2.13 0.00 0.00 2.10
433 434 6.425210 TGGGACACTTCATATGGATAAGAG 57.575 41.667 2.13 1.14 0.00 2.85
434 435 5.221722 TGGGACACTTCATATGGATAAGAGC 60.222 44.000 2.13 0.00 0.00 4.09
435 436 5.241662 GGACACTTCATATGGATAAGAGCC 58.758 45.833 2.13 1.60 0.00 4.70
436 437 5.234466 ACACTTCATATGGATAAGAGCCC 57.766 43.478 2.13 0.00 0.00 5.19
437 438 4.660303 ACACTTCATATGGATAAGAGCCCA 59.340 41.667 2.13 0.00 36.79 5.36
438 439 4.999950 CACTTCATATGGATAAGAGCCCAC 59.000 45.833 2.13 0.00 34.92 4.61
439 440 4.042187 ACTTCATATGGATAAGAGCCCACC 59.958 45.833 2.13 0.00 34.92 4.61
440 441 2.912956 TCATATGGATAAGAGCCCACCC 59.087 50.000 2.13 0.00 34.92 4.61
441 442 1.348064 TATGGATAAGAGCCCACCCG 58.652 55.000 0.00 0.00 34.92 5.28
442 443 2.056906 ATGGATAAGAGCCCACCCGC 62.057 60.000 0.00 0.00 34.92 6.13
443 444 2.742116 GGATAAGAGCCCACCCGCA 61.742 63.158 0.00 0.00 0.00 5.69
444 445 1.223487 GATAAGAGCCCACCCGCAA 59.777 57.895 0.00 0.00 0.00 4.85
445 446 0.179018 GATAAGAGCCCACCCGCAAT 60.179 55.000 0.00 0.00 0.00 3.56
446 447 0.466189 ATAAGAGCCCACCCGCAATG 60.466 55.000 0.00 0.00 0.00 2.82
447 448 2.550699 TAAGAGCCCACCCGCAATGG 62.551 60.000 0.00 0.00 36.94 3.16
448 449 4.424711 GAGCCCACCCGCAATGGA 62.425 66.667 0.00 0.00 42.00 3.41
449 450 4.431131 AGCCCACCCGCAATGGAG 62.431 66.667 0.00 0.00 42.00 3.86
458 459 3.987404 GCAATGGAGGCGAGTTGT 58.013 55.556 0.00 0.00 0.00 3.32
459 460 2.257353 GCAATGGAGGCGAGTTGTT 58.743 52.632 0.00 0.00 0.00 2.83
460 461 0.169009 GCAATGGAGGCGAGTTGTTC 59.831 55.000 0.00 0.00 0.00 3.18
461 462 0.804989 CAATGGAGGCGAGTTGTTCC 59.195 55.000 0.00 0.00 0.00 3.62
462 463 0.693049 AATGGAGGCGAGTTGTTCCT 59.307 50.000 0.00 0.00 0.00 3.36
463 464 0.250513 ATGGAGGCGAGTTGTTCCTC 59.749 55.000 0.00 0.00 44.28 3.71
470 471 1.080025 GAGTTGTTCCTCGGGGTCG 60.080 63.158 0.00 0.00 37.82 4.79
471 472 1.530013 GAGTTGTTCCTCGGGGTCGA 61.530 60.000 0.00 0.00 43.86 4.20
472 473 1.117142 AGTTGTTCCTCGGGGTCGAA 61.117 55.000 0.00 0.00 45.47 3.71
473 474 0.669625 GTTGTTCCTCGGGGTCGAAG 60.670 60.000 0.00 0.00 45.47 3.79
474 475 2.125633 GTTCCTCGGGGTCGAAGC 60.126 66.667 0.00 0.00 45.47 3.86
475 476 2.602267 TTCCTCGGGGTCGAAGCA 60.602 61.111 0.00 0.00 45.47 3.91
476 477 1.987855 TTCCTCGGGGTCGAAGCAT 60.988 57.895 0.00 0.00 45.47 3.79
477 478 2.202932 CCTCGGGGTCGAAGCATG 60.203 66.667 0.00 0.00 45.47 4.06
478 479 2.202932 CTCGGGGTCGAAGCATGG 60.203 66.667 0.00 0.00 45.47 3.66
479 480 2.682136 TCGGGGTCGAAGCATGGA 60.682 61.111 0.00 0.00 43.03 3.41
480 481 2.032860 CTCGGGGTCGAAGCATGGAT 62.033 60.000 0.00 0.00 45.47 3.41
481 482 1.595382 CGGGGTCGAAGCATGGATC 60.595 63.158 0.00 0.00 39.00 3.36
482 483 1.526887 GGGGTCGAAGCATGGATCA 59.473 57.895 0.00 0.00 0.00 2.92
483 484 0.533755 GGGGTCGAAGCATGGATCAG 60.534 60.000 0.00 0.00 0.00 2.90
484 485 0.179000 GGGTCGAAGCATGGATCAGT 59.821 55.000 0.00 0.00 0.00 3.41
485 486 1.293924 GGTCGAAGCATGGATCAGTG 58.706 55.000 0.00 0.00 0.00 3.66
486 487 0.654683 GTCGAAGCATGGATCAGTGC 59.345 55.000 12.21 12.21 41.57 4.40
487 488 0.462581 TCGAAGCATGGATCAGTGCC 60.463 55.000 15.44 3.72 42.20 5.01
488 489 1.769098 CGAAGCATGGATCAGTGCCG 61.769 60.000 15.44 10.46 42.20 5.69
489 490 2.056481 GAAGCATGGATCAGTGCCGC 62.056 60.000 15.44 6.69 42.20 6.53
490 491 2.515523 GCATGGATCAGTGCCGCT 60.516 61.111 9.68 0.00 35.35 5.52
491 492 2.831366 GCATGGATCAGTGCCGCTG 61.831 63.158 9.68 0.00 46.34 5.18
499 500 3.566261 AGTGCCGCTGACAATTCG 58.434 55.556 0.00 0.00 0.00 3.34
500 501 1.005037 AGTGCCGCTGACAATTCGA 60.005 52.632 0.00 0.00 0.00 3.71
501 502 0.391661 AGTGCCGCTGACAATTCGAT 60.392 50.000 0.00 0.00 0.00 3.59
502 503 1.134818 AGTGCCGCTGACAATTCGATA 60.135 47.619 0.00 0.00 0.00 2.92
503 504 1.867233 GTGCCGCTGACAATTCGATAT 59.133 47.619 0.00 0.00 0.00 1.63
504 505 2.287915 GTGCCGCTGACAATTCGATATT 59.712 45.455 0.00 0.00 0.00 1.28
505 506 2.287644 TGCCGCTGACAATTCGATATTG 59.712 45.455 14.68 14.68 35.29 1.90
506 507 2.287915 GCCGCTGACAATTCGATATTGT 59.712 45.455 19.21 19.21 44.08 2.71
507 508 3.493129 GCCGCTGACAATTCGATATTGTA 59.507 43.478 19.17 11.02 41.76 2.41
508 509 4.152402 GCCGCTGACAATTCGATATTGTAT 59.848 41.667 19.17 5.18 41.76 2.29
509 510 5.347635 GCCGCTGACAATTCGATATTGTATA 59.652 40.000 19.17 13.25 41.76 1.47
510 511 6.128661 GCCGCTGACAATTCGATATTGTATAA 60.129 38.462 19.17 11.23 41.76 0.98
511 512 7.570507 GCCGCTGACAATTCGATATTGTATAAA 60.571 37.037 19.17 9.62 41.76 1.40
512 513 7.740346 CCGCTGACAATTCGATATTGTATAAAC 59.260 37.037 19.17 11.19 41.76 2.01
513 514 8.487970 CGCTGACAATTCGATATTGTATAAACT 58.512 33.333 19.17 3.09 41.76 2.66
514 515 9.586150 GCTGACAATTCGATATTGTATAAACTG 57.414 33.333 19.17 13.51 41.76 3.16
515 516 9.586150 CTGACAATTCGATATTGTATAAACTGC 57.414 33.333 19.17 9.76 41.76 4.40
516 517 8.556194 TGACAATTCGATATTGTATAAACTGCC 58.444 33.333 19.17 9.29 41.76 4.85
517 518 8.445275 ACAATTCGATATTGTATAAACTGCCA 57.555 30.769 18.27 0.00 40.12 4.92
518 519 9.066892 ACAATTCGATATTGTATAAACTGCCAT 57.933 29.630 18.27 0.00 40.12 4.40
519 520 9.333497 CAATTCGATATTGTATAAACTGCCATG 57.667 33.333 10.38 0.00 0.00 3.66
520 521 8.621532 ATTCGATATTGTATAAACTGCCATGT 57.378 30.769 0.00 0.00 0.00 3.21
521 522 9.719355 ATTCGATATTGTATAAACTGCCATGTA 57.281 29.630 0.00 0.00 0.00 2.29
522 523 9.549078 TTCGATATTGTATAAACTGCCATGTAA 57.451 29.630 0.00 0.00 0.00 2.41
523 524 9.549078 TCGATATTGTATAAACTGCCATGTAAA 57.451 29.630 0.00 0.00 0.00 2.01
534 535 8.871686 AAACTGCCATGTAAAACTTTTTCTAG 57.128 30.769 0.00 0.00 0.00 2.43
535 536 7.817418 ACTGCCATGTAAAACTTTTTCTAGA 57.183 32.000 0.00 0.00 0.00 2.43
536 537 8.232913 ACTGCCATGTAAAACTTTTTCTAGAA 57.767 30.769 0.00 0.00 0.00 2.10
537 538 8.691797 ACTGCCATGTAAAACTTTTTCTAGAAA 58.308 29.630 13.99 13.99 0.00 2.52
538 539 9.528018 CTGCCATGTAAAACTTTTTCTAGAAAA 57.472 29.630 23.65 23.65 38.40 2.29
539 540 9.877178 TGCCATGTAAAACTTTTTCTAGAAAAA 57.123 25.926 31.43 31.43 44.98 1.94
548 549 8.962884 AACTTTTTCTAGAAAAATTGCCATGT 57.037 26.923 32.87 24.55 45.69 3.21
549 550 8.369218 ACTTTTTCTAGAAAAATTGCCATGTG 57.631 30.769 32.87 22.99 45.69 3.21
550 551 8.203485 ACTTTTTCTAGAAAAATTGCCATGTGA 58.797 29.630 32.87 14.36 45.69 3.58
551 552 8.954950 TTTTTCTAGAAAAATTGCCATGTGAA 57.045 26.923 30.56 11.36 43.08 3.18
552 553 8.954950 TTTTCTAGAAAAATTGCCATGTGAAA 57.045 26.923 24.89 0.16 37.35 2.69
553 554 8.954950 TTTCTAGAAAAATTGCCATGTGAAAA 57.045 26.923 15.57 0.00 0.00 2.29
554 555 8.954950 TTCTAGAAAAATTGCCATGTGAAAAA 57.045 26.923 1.68 0.00 0.00 1.94
578 579 8.499403 AAAAAGGAGAGACTAGAATGCAATAC 57.501 34.615 0.00 0.00 0.00 1.89
579 580 5.799827 AGGAGAGACTAGAATGCAATACC 57.200 43.478 0.00 0.00 0.00 2.73
580 581 5.211973 AGGAGAGACTAGAATGCAATACCA 58.788 41.667 0.00 0.00 0.00 3.25
581 582 5.663106 AGGAGAGACTAGAATGCAATACCAA 59.337 40.000 0.00 0.00 0.00 3.67
582 583 6.156949 AGGAGAGACTAGAATGCAATACCAAA 59.843 38.462 0.00 0.00 0.00 3.28
583 584 6.823689 GGAGAGACTAGAATGCAATACCAAAA 59.176 38.462 0.00 0.00 0.00 2.44
584 585 7.011857 GGAGAGACTAGAATGCAATACCAAAAG 59.988 40.741 0.00 0.00 0.00 2.27
585 586 7.398024 AGAGACTAGAATGCAATACCAAAAGT 58.602 34.615 0.00 0.00 0.00 2.66
586 587 7.335422 AGAGACTAGAATGCAATACCAAAAGTG 59.665 37.037 0.00 0.00 0.00 3.16
747 784 2.334279 GGGTAGGGTCCCTCCTCCT 61.334 68.421 15.84 0.00 43.85 3.69
838 892 3.204827 GTACTCCGGCGGACGCTA 61.205 66.667 27.46 11.75 42.52 4.26
854 909 4.397832 TACCAAACTCCGGCCGGC 62.398 66.667 39.89 21.18 34.68 6.13
871 926 3.461773 CCCTCACTGCGGACGGAT 61.462 66.667 0.00 0.00 0.00 4.18
900 988 0.524392 CGTCTAGCAAGGTGAGCTCG 60.524 60.000 9.64 0.00 42.32 5.03
902 990 1.743958 GTCTAGCAAGGTGAGCTCGTA 59.256 52.381 9.64 0.00 42.32 3.43
954 1044 2.689983 CTCCAAAATTTCATCTCCCCCG 59.310 50.000 0.00 0.00 0.00 5.73
1439 1990 1.152943 CGTCCTCGGATCCTCCTCA 60.153 63.158 10.75 0.00 33.30 3.86
1598 2505 6.599437 CCACGTCTTAGTTTTGATTTAGTGG 58.401 40.000 0.00 0.00 38.31 4.00
1620 2527 9.563748 AGTGGTGCAAAAATAAGTTTAGTACTA 57.436 29.630 0.00 0.00 35.54 1.82
1777 2684 6.897259 TTCGCTACCATTGTTATGTTACTC 57.103 37.500 0.00 0.00 0.00 2.59
1831 2739 5.357257 TCCAGTCAGTGAAACAAGAGTTAC 58.643 41.667 0.00 0.00 41.43 2.50
1899 2807 2.025037 TCCCAAGGTGCTTGCTGATATT 60.025 45.455 0.00 0.00 39.85 1.28
2033 2943 7.607991 TGATCTGAGGTTTCTGGAAAATAACTC 59.392 37.037 0.00 4.93 31.33 3.01
2035 2945 6.936900 TCTGAGGTTTCTGGAAAATAACTCAG 59.063 38.462 23.51 23.51 41.72 3.35
2036 2946 6.601332 TGAGGTTTCTGGAAAATAACTCAGT 58.399 36.000 12.47 0.00 31.64 3.41
2416 3444 5.224135 ACGGTTGTAAATGTATTTGTTGGC 58.776 37.500 0.27 0.00 0.00 4.52
2458 3486 4.686191 CTCCTCAGAGCAGATGGTAATT 57.314 45.455 0.00 0.00 32.13 1.40
2515 3543 2.517959 CTTCTTGGTGGAGGCAATCAA 58.482 47.619 0.00 0.00 0.00 2.57
2548 3576 0.703488 TTGGAGTTGGCCATGGATCA 59.297 50.000 18.40 10.21 37.86 2.92
2956 5016 2.628178 ACTTGTCGAGACCATCACTCAA 59.372 45.455 0.34 0.00 34.47 3.02
3513 6362 7.284919 ACACTTTTCAACCTTAAACTATGGG 57.715 36.000 0.00 0.00 0.00 4.00
3774 6649 1.192146 TTCCTGCCCGCTGTTACTCT 61.192 55.000 0.00 0.00 0.00 3.24
3970 6978 2.042162 ACATCTTCCTTTCCATGCACCT 59.958 45.455 0.00 0.00 0.00 4.00
4396 7645 0.907704 TTCCACTCGGGCATGGTAGT 60.908 55.000 0.00 0.00 37.27 2.73
4443 7693 2.665185 GCGACACGTTCTTGGCCT 60.665 61.111 3.32 0.00 0.00 5.19
4445 7695 2.372690 CGACACGTTCTTGGCCTCG 61.373 63.158 3.32 0.00 0.00 4.63
4548 7800 1.726853 CCAGTCCATGGTCTCGTTTC 58.273 55.000 12.58 0.00 44.91 2.78
4622 7874 1.335132 GGTCATGGCCTCCGACCTTA 61.335 60.000 23.64 0.00 44.82 2.69
4724 7977 1.680522 CTGCAGCCTCGTCCTATGGT 61.681 60.000 0.00 0.00 0.00 3.55
4848 8101 9.508567 GCTTCTATCCAAACATATTTTGTCTTC 57.491 33.333 8.54 0.00 37.68 2.87
5160 9966 2.571653 AGCCCTACACAGTTGCTTCATA 59.428 45.455 0.00 0.00 0.00 2.15
5300 10109 1.209747 AGGGTAAAGGATGCGGAGAAC 59.790 52.381 0.00 0.00 0.00 3.01
5547 14694 1.480212 TTCTGACGCATCCTGGTGGT 61.480 55.000 0.00 0.00 34.23 4.16
5705 14861 1.098050 AGATGCACCGGATTTTCTGC 58.902 50.000 9.46 7.06 0.00 4.26
5847 15006 1.278985 TCCGATGGTCAGATGCAGTTT 59.721 47.619 0.00 0.00 0.00 2.66
5976 15143 6.901081 TGTCCATCTCGATAGTAATGACAT 57.099 37.500 0.00 0.00 33.14 3.06
6140 15315 7.298374 TGGTATAATATTTGCCCACAACCATA 58.702 34.615 0.00 0.00 34.87 2.74
6322 15504 8.789762 TGCTTTTATAAACACTCTAGGAAAACC 58.210 33.333 0.00 0.00 0.00 3.27
6484 15667 3.835378 TGTCGTGACGAGCTATGTTTA 57.165 42.857 8.41 0.00 36.23 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.971726 ATTCCAACATAGACTACATACGGA 57.028 37.500 0.00 0.00 0.00 4.69
1 2 7.926555 AGAAATTCCAACATAGACTACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
2 3 8.873215 AGAAATTCCAACATAGACTACATACG 57.127 34.615 0.00 0.00 0.00 3.06
42 43 9.996554 CATGTCTTATACACCATATGTTCCTAA 57.003 33.333 1.24 0.00 42.09 2.69
43 44 8.593679 CCATGTCTTATACACCATATGTTCCTA 58.406 37.037 1.24 0.00 42.09 2.94
44 45 7.453393 CCATGTCTTATACACCATATGTTCCT 58.547 38.462 1.24 0.00 42.09 3.36
45 46 6.655003 CCCATGTCTTATACACCATATGTTCC 59.345 42.308 1.24 0.00 42.09 3.62
46 47 7.450074 TCCCATGTCTTATACACCATATGTTC 58.550 38.462 1.24 0.00 42.09 3.18
47 48 7.387265 TCCCATGTCTTATACACCATATGTT 57.613 36.000 1.24 0.00 42.09 2.71
48 49 7.397221 CATCCCATGTCTTATACACCATATGT 58.603 38.462 1.24 0.00 42.09 2.29
49 50 6.317140 GCATCCCATGTCTTATACACCATATG 59.683 42.308 0.00 0.00 42.09 1.78
50 51 6.012596 TGCATCCCATGTCTTATACACCATAT 60.013 38.462 0.00 0.00 42.09 1.78
51 52 5.309282 TGCATCCCATGTCTTATACACCATA 59.691 40.000 0.00 0.00 42.09 2.74
52 53 4.104579 TGCATCCCATGTCTTATACACCAT 59.895 41.667 0.00 0.00 42.09 3.55
53 54 3.457749 TGCATCCCATGTCTTATACACCA 59.542 43.478 0.00 0.00 42.09 4.17
54 55 4.085357 TGCATCCCATGTCTTATACACC 57.915 45.455 0.00 0.00 42.09 4.16
55 56 5.555017 AGATGCATCCCATGTCTTATACAC 58.445 41.667 23.06 0.00 42.09 2.90
56 57 5.830799 AGATGCATCCCATGTCTTATACA 57.169 39.130 23.06 0.00 43.86 2.29
57 58 6.595716 GGTTAGATGCATCCCATGTCTTATAC 59.404 42.308 23.06 4.22 33.29 1.47
58 59 6.501805 AGGTTAGATGCATCCCATGTCTTATA 59.498 38.462 23.06 2.08 33.29 0.98
59 60 5.311649 AGGTTAGATGCATCCCATGTCTTAT 59.688 40.000 23.06 3.09 33.29 1.73
60 61 4.660303 AGGTTAGATGCATCCCATGTCTTA 59.340 41.667 23.06 3.56 33.29 2.10
61 62 3.461085 AGGTTAGATGCATCCCATGTCTT 59.539 43.478 23.06 4.58 33.29 3.01
62 63 3.051581 AGGTTAGATGCATCCCATGTCT 58.948 45.455 23.06 10.45 33.29 3.41
63 64 3.406764 GAGGTTAGATGCATCCCATGTC 58.593 50.000 23.06 11.07 33.29 3.06
64 65 2.224378 CGAGGTTAGATGCATCCCATGT 60.224 50.000 23.06 6.85 33.29 3.21
65 66 2.037641 TCGAGGTTAGATGCATCCCATG 59.962 50.000 23.06 12.85 33.29 3.66
66 67 2.037772 GTCGAGGTTAGATGCATCCCAT 59.962 50.000 23.06 9.16 36.70 4.00
67 68 1.412710 GTCGAGGTTAGATGCATCCCA 59.587 52.381 23.06 8.79 0.00 4.37
68 69 1.603172 CGTCGAGGTTAGATGCATCCC 60.603 57.143 23.06 16.69 0.00 3.85
69 70 1.337071 TCGTCGAGGTTAGATGCATCC 59.663 52.381 23.06 8.60 0.00 3.51
70 71 2.223502 TGTCGTCGAGGTTAGATGCATC 60.224 50.000 19.37 19.37 0.00 3.91
71 72 1.749063 TGTCGTCGAGGTTAGATGCAT 59.251 47.619 0.00 0.00 0.00 3.96
72 73 1.170442 TGTCGTCGAGGTTAGATGCA 58.830 50.000 4.85 0.00 0.00 3.96
73 74 2.273370 TTGTCGTCGAGGTTAGATGC 57.727 50.000 4.85 0.00 0.00 3.91
74 75 3.571571 TGTTTGTCGTCGAGGTTAGATG 58.428 45.455 4.85 0.00 0.00 2.90
75 76 3.928727 TGTTTGTCGTCGAGGTTAGAT 57.071 42.857 4.85 0.00 0.00 1.98
76 77 3.181488 TGTTGTTTGTCGTCGAGGTTAGA 60.181 43.478 4.85 0.00 0.00 2.10
77 78 3.117794 TGTTGTTTGTCGTCGAGGTTAG 58.882 45.455 4.85 0.00 0.00 2.34
78 79 3.162202 TGTTGTTTGTCGTCGAGGTTA 57.838 42.857 4.85 0.00 0.00 2.85
79 80 2.012937 TGTTGTTTGTCGTCGAGGTT 57.987 45.000 4.85 0.00 0.00 3.50
80 81 1.662122 GTTGTTGTTTGTCGTCGAGGT 59.338 47.619 4.85 0.00 0.00 3.85
81 82 1.661617 TGTTGTTGTTTGTCGTCGAGG 59.338 47.619 0.00 0.00 0.00 4.63
82 83 3.531982 GATGTTGTTGTTTGTCGTCGAG 58.468 45.455 0.00 0.00 0.00 4.04
83 84 2.034423 CGATGTTGTTGTTTGTCGTCGA 60.034 45.455 0.00 0.00 39.05 4.20
84 85 2.286223 CGATGTTGTTGTTTGTCGTCG 58.714 47.619 0.00 0.00 0.00 5.12
85 86 2.034076 GCGATGTTGTTGTTTGTCGTC 58.966 47.619 0.00 0.00 0.00 4.20
86 87 1.268335 GGCGATGTTGTTGTTTGTCGT 60.268 47.619 0.00 0.00 0.00 4.34
87 88 1.002900 AGGCGATGTTGTTGTTTGTCG 60.003 47.619 0.00 0.00 0.00 4.35
88 89 2.774439 AGGCGATGTTGTTGTTTGTC 57.226 45.000 0.00 0.00 0.00 3.18
89 90 3.120338 CGATAGGCGATGTTGTTGTTTGT 60.120 43.478 0.00 0.00 44.57 2.83
90 91 3.120338 ACGATAGGCGATGTTGTTGTTTG 60.120 43.478 0.00 0.00 44.57 2.93
91 92 3.071479 ACGATAGGCGATGTTGTTGTTT 58.929 40.909 0.00 0.00 44.57 2.83
92 93 2.695359 ACGATAGGCGATGTTGTTGTT 58.305 42.857 0.00 0.00 44.57 2.83
93 94 2.380084 ACGATAGGCGATGTTGTTGT 57.620 45.000 0.00 0.00 44.57 3.32
94 95 2.218759 GCTACGATAGGCGATGTTGTTG 59.781 50.000 0.00 0.00 44.57 3.33
95 96 2.470821 GCTACGATAGGCGATGTTGTT 58.529 47.619 0.00 0.00 44.57 2.83
96 97 1.269621 GGCTACGATAGGCGATGTTGT 60.270 52.381 0.00 0.00 44.57 3.32
97 98 1.419374 GGCTACGATAGGCGATGTTG 58.581 55.000 0.00 0.00 44.57 3.33
98 99 3.888093 GGCTACGATAGGCGATGTT 57.112 52.632 0.00 0.00 44.57 2.71
105 106 2.957006 ACTTACACAGGGCTACGATAGG 59.043 50.000 0.00 0.00 43.77 2.57
106 107 5.241064 ACATACTTACACAGGGCTACGATAG 59.759 44.000 0.00 0.00 46.19 2.08
107 108 5.009310 CACATACTTACACAGGGCTACGATA 59.991 44.000 0.00 0.00 0.00 2.92
108 109 3.958798 ACATACTTACACAGGGCTACGAT 59.041 43.478 0.00 0.00 0.00 3.73
109 110 3.129813 CACATACTTACACAGGGCTACGA 59.870 47.826 0.00 0.00 0.00 3.43
110 111 3.129813 TCACATACTTACACAGGGCTACG 59.870 47.826 0.00 0.00 0.00 3.51
111 112 4.730949 TCACATACTTACACAGGGCTAC 57.269 45.455 0.00 0.00 0.00 3.58
112 113 5.748670 TTTCACATACTTACACAGGGCTA 57.251 39.130 0.00 0.00 0.00 3.93
113 114 4.634012 TTTCACATACTTACACAGGGCT 57.366 40.909 0.00 0.00 0.00 5.19
114 115 5.640732 CATTTTCACATACTTACACAGGGC 58.359 41.667 0.00 0.00 0.00 5.19
115 116 5.182950 TGCATTTTCACATACTTACACAGGG 59.817 40.000 0.00 0.00 0.00 4.45
116 117 6.252967 TGCATTTTCACATACTTACACAGG 57.747 37.500 0.00 0.00 0.00 4.00
117 118 7.201376 GCATTGCATTTTCACATACTTACACAG 60.201 37.037 3.15 0.00 0.00 3.66
118 119 6.585702 GCATTGCATTTTCACATACTTACACA 59.414 34.615 3.15 0.00 0.00 3.72
119 120 6.808212 AGCATTGCATTTTCACATACTTACAC 59.192 34.615 11.91 0.00 0.00 2.90
120 121 6.923012 AGCATTGCATTTTCACATACTTACA 58.077 32.000 11.91 0.00 0.00 2.41
121 122 8.798153 GTTAGCATTGCATTTTCACATACTTAC 58.202 33.333 11.91 0.00 0.00 2.34
122 123 8.739039 AGTTAGCATTGCATTTTCACATACTTA 58.261 29.630 11.91 0.00 0.00 2.24
123 124 7.605449 AGTTAGCATTGCATTTTCACATACTT 58.395 30.769 11.91 0.00 0.00 2.24
124 125 7.161773 AGTTAGCATTGCATTTTCACATACT 57.838 32.000 11.91 0.00 0.00 2.12
125 126 7.967854 TGTAGTTAGCATTGCATTTTCACATAC 59.032 33.333 11.91 2.44 0.00 2.39
126 127 8.049655 TGTAGTTAGCATTGCATTTTCACATA 57.950 30.769 11.91 0.00 0.00 2.29
127 128 6.923012 TGTAGTTAGCATTGCATTTTCACAT 58.077 32.000 11.91 0.00 0.00 3.21
128 129 6.324561 TGTAGTTAGCATTGCATTTTCACA 57.675 33.333 11.91 4.85 0.00 3.58
129 130 6.640499 TGTTGTAGTTAGCATTGCATTTTCAC 59.360 34.615 11.91 2.30 0.00 3.18
130 131 6.743110 TGTTGTAGTTAGCATTGCATTTTCA 58.257 32.000 11.91 0.35 0.00 2.69
131 132 7.201461 CCATGTTGTAGTTAGCATTGCATTTTC 60.201 37.037 11.91 0.00 0.00 2.29
132 133 6.591062 CCATGTTGTAGTTAGCATTGCATTTT 59.409 34.615 11.91 0.00 0.00 1.82
133 134 6.101332 CCATGTTGTAGTTAGCATTGCATTT 58.899 36.000 11.91 0.00 0.00 2.32
134 135 5.185635 ACCATGTTGTAGTTAGCATTGCATT 59.814 36.000 11.91 0.00 0.00 3.56
135 136 4.706476 ACCATGTTGTAGTTAGCATTGCAT 59.294 37.500 11.91 0.00 0.00 3.96
136 137 4.078537 ACCATGTTGTAGTTAGCATTGCA 58.921 39.130 11.91 0.00 0.00 4.08
137 138 4.701956 ACCATGTTGTAGTTAGCATTGC 57.298 40.909 0.00 0.00 0.00 3.56
138 139 7.589395 TGTTAACCATGTTGTAGTTAGCATTG 58.411 34.615 2.48 0.00 33.88 2.82
139 140 7.753309 TGTTAACCATGTTGTAGTTAGCATT 57.247 32.000 2.48 0.00 33.88 3.56
140 141 7.938140 ATGTTAACCATGTTGTAGTTAGCAT 57.062 32.000 12.21 12.21 40.70 3.79
141 142 7.445707 TGAATGTTAACCATGTTGTAGTTAGCA 59.554 33.333 2.48 9.52 40.10 3.49
142 143 7.749126 GTGAATGTTAACCATGTTGTAGTTAGC 59.251 37.037 2.48 0.00 32.82 3.09
143 144 8.234546 GGTGAATGTTAACCATGTTGTAGTTAG 58.765 37.037 2.48 0.00 36.41 2.34
144 145 7.720074 TGGTGAATGTTAACCATGTTGTAGTTA 59.280 33.333 2.48 0.00 41.56 2.24
145 146 6.547880 TGGTGAATGTTAACCATGTTGTAGTT 59.452 34.615 2.48 0.00 41.56 2.24
146 147 6.065374 TGGTGAATGTTAACCATGTTGTAGT 58.935 36.000 2.48 0.00 41.56 2.73
147 148 6.567687 TGGTGAATGTTAACCATGTTGTAG 57.432 37.500 2.48 0.00 41.56 2.74
148 149 6.961360 TTGGTGAATGTTAACCATGTTGTA 57.039 33.333 2.48 0.00 45.66 2.41
149 150 5.860941 TTGGTGAATGTTAACCATGTTGT 57.139 34.783 2.48 0.00 45.66 3.32
150 151 7.545362 TTTTTGGTGAATGTTAACCATGTTG 57.455 32.000 2.48 0.00 45.66 3.33
174 175 9.228949 TGTTGCCATTTTATTATCATTTGCTTT 57.771 25.926 0.00 0.00 0.00 3.51
175 176 8.789825 TGTTGCCATTTTATTATCATTTGCTT 57.210 26.923 0.00 0.00 0.00 3.91
176 177 8.967664 ATGTTGCCATTTTATTATCATTTGCT 57.032 26.923 0.00 0.00 0.00 3.91
177 178 9.048446 AGATGTTGCCATTTTATTATCATTTGC 57.952 29.630 0.00 0.00 0.00 3.68
186 187 9.407380 TGTCAGTATAGATGTTGCCATTTTATT 57.593 29.630 0.00 0.00 0.00 1.40
187 188 8.978874 TGTCAGTATAGATGTTGCCATTTTAT 57.021 30.769 0.00 0.00 0.00 1.40
188 189 8.978874 ATGTCAGTATAGATGTTGCCATTTTA 57.021 30.769 0.00 0.00 0.00 1.52
189 190 7.776969 AGATGTCAGTATAGATGTTGCCATTTT 59.223 33.333 0.00 0.00 0.00 1.82
190 191 7.285566 AGATGTCAGTATAGATGTTGCCATTT 58.714 34.615 0.00 0.00 0.00 2.32
191 192 6.835174 AGATGTCAGTATAGATGTTGCCATT 58.165 36.000 0.00 0.00 0.00 3.16
192 193 6.430962 AGATGTCAGTATAGATGTTGCCAT 57.569 37.500 0.00 0.00 0.00 4.40
193 194 5.876651 AGATGTCAGTATAGATGTTGCCA 57.123 39.130 0.00 0.00 0.00 4.92
194 195 6.283694 TGAAGATGTCAGTATAGATGTTGCC 58.716 40.000 0.00 0.00 0.00 4.52
195 196 7.959689 ATGAAGATGTCAGTATAGATGTTGC 57.040 36.000 0.00 0.00 40.43 4.17
196 197 8.281194 GCAATGAAGATGTCAGTATAGATGTTG 58.719 37.037 0.00 0.00 40.43 3.33
197 198 7.170489 CGCAATGAAGATGTCAGTATAGATGTT 59.830 37.037 0.00 0.00 40.43 2.71
198 199 6.644181 CGCAATGAAGATGTCAGTATAGATGT 59.356 38.462 0.00 0.00 40.43 3.06
199 200 6.865205 TCGCAATGAAGATGTCAGTATAGATG 59.135 38.462 0.00 0.00 40.43 2.90
200 201 6.986250 TCGCAATGAAGATGTCAGTATAGAT 58.014 36.000 0.00 0.00 40.43 1.98
201 202 6.391227 TCGCAATGAAGATGTCAGTATAGA 57.609 37.500 0.00 0.00 40.43 1.98
202 203 7.436376 TCTTTCGCAATGAAGATGTCAGTATAG 59.564 37.037 0.00 0.00 40.43 1.31
203 204 7.264947 TCTTTCGCAATGAAGATGTCAGTATA 58.735 34.615 0.00 0.00 40.43 1.47
204 205 6.108687 TCTTTCGCAATGAAGATGTCAGTAT 58.891 36.000 0.00 0.00 40.43 2.12
205 206 5.478407 TCTTTCGCAATGAAGATGTCAGTA 58.522 37.500 0.00 0.00 40.43 2.74
206 207 4.318332 TCTTTCGCAATGAAGATGTCAGT 58.682 39.130 0.00 0.00 40.43 3.41
207 208 4.391216 ACTCTTTCGCAATGAAGATGTCAG 59.609 41.667 0.00 0.00 40.43 3.51
208 209 4.318332 ACTCTTTCGCAATGAAGATGTCA 58.682 39.130 0.00 0.00 41.67 3.58
209 210 4.935885 ACTCTTTCGCAATGAAGATGTC 57.064 40.909 0.00 0.00 37.99 3.06
210 211 5.700832 TGTTACTCTTTCGCAATGAAGATGT 59.299 36.000 0.00 0.00 37.99 3.06
211 212 6.017933 GTGTTACTCTTTCGCAATGAAGATG 58.982 40.000 0.00 0.00 37.99 2.90
212 213 5.163953 CGTGTTACTCTTTCGCAATGAAGAT 60.164 40.000 0.00 0.00 37.99 2.40
213 214 4.149922 CGTGTTACTCTTTCGCAATGAAGA 59.850 41.667 0.00 0.00 37.99 2.87
214 215 4.084537 ACGTGTTACTCTTTCGCAATGAAG 60.085 41.667 0.00 0.00 37.99 3.02
215 216 3.805422 ACGTGTTACTCTTTCGCAATGAA 59.195 39.130 0.00 0.00 33.85 2.57
216 217 3.386486 ACGTGTTACTCTTTCGCAATGA 58.614 40.909 0.00 0.00 0.00 2.57
217 218 3.788434 ACGTGTTACTCTTTCGCAATG 57.212 42.857 0.00 0.00 0.00 2.82
218 219 4.986659 ACTAACGTGTTACTCTTTCGCAAT 59.013 37.500 0.00 0.00 0.00 3.56
219 220 4.362279 ACTAACGTGTTACTCTTTCGCAA 58.638 39.130 0.00 0.00 0.00 4.85
220 221 3.968649 ACTAACGTGTTACTCTTTCGCA 58.031 40.909 0.00 0.00 0.00 5.10
221 222 6.399354 CCTTTACTAACGTGTTACTCTTTCGC 60.399 42.308 0.00 0.00 0.00 4.70
222 223 6.088616 CCCTTTACTAACGTGTTACTCTTTCG 59.911 42.308 0.00 0.00 0.00 3.46
223 224 7.115520 GTCCCTTTACTAACGTGTTACTCTTTC 59.884 40.741 0.00 0.00 0.00 2.62
224 225 6.925718 GTCCCTTTACTAACGTGTTACTCTTT 59.074 38.462 0.00 0.00 0.00 2.52
225 226 6.450545 GTCCCTTTACTAACGTGTTACTCTT 58.549 40.000 0.00 0.00 0.00 2.85
226 227 5.335191 CGTCCCTTTACTAACGTGTTACTCT 60.335 44.000 0.00 0.00 0.00 3.24
227 228 4.853743 CGTCCCTTTACTAACGTGTTACTC 59.146 45.833 0.00 0.00 0.00 2.59
228 229 4.321230 CCGTCCCTTTACTAACGTGTTACT 60.321 45.833 0.00 0.00 33.45 2.24
229 230 3.920412 CCGTCCCTTTACTAACGTGTTAC 59.080 47.826 0.00 0.00 33.45 2.50
230 231 3.823873 TCCGTCCCTTTACTAACGTGTTA 59.176 43.478 0.00 0.00 33.45 2.41
231 232 2.627699 TCCGTCCCTTTACTAACGTGTT 59.372 45.455 0.00 0.00 33.45 3.32
232 233 2.238521 TCCGTCCCTTTACTAACGTGT 58.761 47.619 0.00 0.00 33.45 4.49
233 234 3.515330 ATCCGTCCCTTTACTAACGTG 57.485 47.619 0.00 0.00 33.45 4.49
234 235 5.659440 TTAATCCGTCCCTTTACTAACGT 57.341 39.130 0.00 0.00 33.45 3.99
235 236 6.966435 TTTTAATCCGTCCCTTTACTAACG 57.034 37.500 0.00 0.00 35.01 3.18
277 278 9.375974 TGGCTATAATAGGTTATCTGTTGTAGT 57.624 33.333 7.37 0.00 39.07 2.73
280 281 9.507329 CAATGGCTATAATAGGTTATCTGTTGT 57.493 33.333 0.00 0.00 32.84 3.32
281 282 9.725019 TCAATGGCTATAATAGGTTATCTGTTG 57.275 33.333 0.00 0.00 32.84 3.33
290 291 9.726438 GTATCAGTTTCAATGGCTATAATAGGT 57.274 33.333 0.00 0.00 0.00 3.08
291 292 9.950496 AGTATCAGTTTCAATGGCTATAATAGG 57.050 33.333 0.00 0.00 0.00 2.57
299 300 9.905713 TTTCTATTAGTATCAGTTTCAATGGCT 57.094 29.630 0.00 0.00 0.00 4.75
322 323 9.897744 TGTTTCAATCAGTATCAGTTTCATTTC 57.102 29.630 0.00 0.00 0.00 2.17
324 325 9.683069 GTTGTTTCAATCAGTATCAGTTTCATT 57.317 29.630 0.00 0.00 0.00 2.57
325 326 9.071276 AGTTGTTTCAATCAGTATCAGTTTCAT 57.929 29.630 0.00 0.00 0.00 2.57
326 327 8.344831 CAGTTGTTTCAATCAGTATCAGTTTCA 58.655 33.333 0.00 0.00 0.00 2.69
327 328 7.805071 CCAGTTGTTTCAATCAGTATCAGTTTC 59.195 37.037 0.00 0.00 0.00 2.78
328 329 7.285401 ACCAGTTGTTTCAATCAGTATCAGTTT 59.715 33.333 0.00 0.00 0.00 2.66
329 330 6.772716 ACCAGTTGTTTCAATCAGTATCAGTT 59.227 34.615 0.00 0.00 0.00 3.16
330 331 6.299141 ACCAGTTGTTTCAATCAGTATCAGT 58.701 36.000 0.00 0.00 0.00 3.41
331 332 6.808008 ACCAGTTGTTTCAATCAGTATCAG 57.192 37.500 0.00 0.00 0.00 2.90
332 333 9.952030 TTATACCAGTTGTTTCAATCAGTATCA 57.048 29.630 0.00 0.00 0.00 2.15
334 335 9.959721 ACTTATACCAGTTGTTTCAATCAGTAT 57.040 29.630 0.00 0.00 0.00 2.12
336 337 9.787435 TTACTTATACCAGTTGTTTCAATCAGT 57.213 29.630 0.00 0.00 0.00 3.41
346 347 9.436957 CAGTTGAATCTTACTTATACCAGTTGT 57.563 33.333 0.00 0.00 0.00 3.32
347 348 9.653287 TCAGTTGAATCTTACTTATACCAGTTG 57.347 33.333 0.00 0.00 0.00 3.16
367 368 9.436957 ACTTACCAAGTATAAACTGATCAGTTG 57.563 33.333 35.47 23.50 44.51 3.16
368 369 9.654663 GACTTACCAAGTATAAACTGATCAGTT 57.345 33.333 31.06 31.06 46.91 3.16
369 370 9.036980 AGACTTACCAAGTATAAACTGATCAGT 57.963 33.333 22.89 22.89 43.03 3.41
370 371 9.522804 GAGACTTACCAAGTATAAACTGATCAG 57.477 37.037 21.37 21.37 43.03 2.90
371 372 8.188799 CGAGACTTACCAAGTATAAACTGATCA 58.811 37.037 0.00 0.00 43.03 2.92
372 373 8.404000 TCGAGACTTACCAAGTATAAACTGATC 58.596 37.037 0.00 0.00 43.03 2.92
373 374 8.289939 TCGAGACTTACCAAGTATAAACTGAT 57.710 34.615 0.00 0.00 43.03 2.90
374 375 7.148120 CCTCGAGACTTACCAAGTATAAACTGA 60.148 40.741 15.71 0.00 43.03 3.41
375 376 6.973474 CCTCGAGACTTACCAAGTATAAACTG 59.027 42.308 15.71 0.00 43.03 3.16
376 377 6.096564 CCCTCGAGACTTACCAAGTATAAACT 59.903 42.308 15.71 0.00 43.03 2.66
377 378 6.271566 CCCTCGAGACTTACCAAGTATAAAC 58.728 44.000 15.71 0.00 43.03 2.01
378 379 5.361857 CCCCTCGAGACTTACCAAGTATAAA 59.638 44.000 15.71 0.00 43.03 1.40
379 380 4.891756 CCCCTCGAGACTTACCAAGTATAA 59.108 45.833 15.71 0.00 43.03 0.98
380 381 4.079558 ACCCCTCGAGACTTACCAAGTATA 60.080 45.833 15.71 0.00 43.03 1.47
381 382 3.297736 CCCCTCGAGACTTACCAAGTAT 58.702 50.000 15.71 0.00 43.03 2.12
382 383 2.042162 ACCCCTCGAGACTTACCAAGTA 59.958 50.000 15.71 0.00 43.03 2.24
383 384 1.203149 ACCCCTCGAGACTTACCAAGT 60.203 52.381 15.71 0.00 46.38 3.16
384 385 1.558233 ACCCCTCGAGACTTACCAAG 58.442 55.000 15.71 0.00 0.00 3.61
385 386 2.042162 ACTACCCCTCGAGACTTACCAA 59.958 50.000 15.71 0.00 0.00 3.67
386 387 1.637553 ACTACCCCTCGAGACTTACCA 59.362 52.381 15.71 0.00 0.00 3.25
387 388 2.426381 CAACTACCCCTCGAGACTTACC 59.574 54.545 15.71 0.00 0.00 2.85
388 389 2.159268 GCAACTACCCCTCGAGACTTAC 60.159 54.545 15.71 0.00 0.00 2.34
389 390 2.097825 GCAACTACCCCTCGAGACTTA 58.902 52.381 15.71 0.28 0.00 2.24
390 391 0.896226 GCAACTACCCCTCGAGACTT 59.104 55.000 15.71 0.00 0.00 3.01
391 392 0.039911 AGCAACTACCCCTCGAGACT 59.960 55.000 15.71 0.00 0.00 3.24
392 393 0.173708 CAGCAACTACCCCTCGAGAC 59.826 60.000 15.71 0.00 0.00 3.36
393 394 0.970937 CCAGCAACTACCCCTCGAGA 60.971 60.000 15.71 0.00 0.00 4.04
394 395 1.517832 CCAGCAACTACCCCTCGAG 59.482 63.158 5.13 5.13 0.00 4.04
395 396 1.987855 CCCAGCAACTACCCCTCGA 60.988 63.158 0.00 0.00 0.00 4.04
396 397 1.987855 TCCCAGCAACTACCCCTCG 60.988 63.158 0.00 0.00 0.00 4.63
397 398 1.198759 TGTCCCAGCAACTACCCCTC 61.199 60.000 0.00 0.00 0.00 4.30
398 399 1.151899 TGTCCCAGCAACTACCCCT 60.152 57.895 0.00 0.00 0.00 4.79
399 400 1.002502 GTGTCCCAGCAACTACCCC 60.003 63.158 0.00 0.00 0.00 4.95
400 401 0.400594 AAGTGTCCCAGCAACTACCC 59.599 55.000 0.00 0.00 0.00 3.69
401 402 1.071699 TGAAGTGTCCCAGCAACTACC 59.928 52.381 0.00 0.00 0.00 3.18
402 403 2.543777 TGAAGTGTCCCAGCAACTAC 57.456 50.000 0.00 0.00 0.00 2.73
403 404 4.384098 CCATATGAAGTGTCCCAGCAACTA 60.384 45.833 3.65 0.00 0.00 2.24
404 405 3.614092 CATATGAAGTGTCCCAGCAACT 58.386 45.455 0.00 0.00 0.00 3.16
405 406 2.684881 CCATATGAAGTGTCCCAGCAAC 59.315 50.000 3.65 0.00 0.00 4.17
406 407 2.575735 TCCATATGAAGTGTCCCAGCAA 59.424 45.455 3.65 0.00 0.00 3.91
407 408 2.195727 TCCATATGAAGTGTCCCAGCA 58.804 47.619 3.65 0.00 0.00 4.41
408 409 3.498774 ATCCATATGAAGTGTCCCAGC 57.501 47.619 3.65 0.00 0.00 4.85
409 410 6.425210 TCTTATCCATATGAAGTGTCCCAG 57.575 41.667 3.65 0.00 0.00 4.45
410 411 5.221722 GCTCTTATCCATATGAAGTGTCCCA 60.222 44.000 3.65 0.00 0.00 4.37
411 412 5.241662 GCTCTTATCCATATGAAGTGTCCC 58.758 45.833 3.65 0.00 0.00 4.46
412 413 5.241662 GGCTCTTATCCATATGAAGTGTCC 58.758 45.833 3.65 4.05 0.00 4.02
413 414 5.221722 TGGGCTCTTATCCATATGAAGTGTC 60.222 44.000 3.65 2.84 0.00 3.67
414 415 4.660303 TGGGCTCTTATCCATATGAAGTGT 59.340 41.667 3.65 0.00 0.00 3.55
415 416 4.999950 GTGGGCTCTTATCCATATGAAGTG 59.000 45.833 3.65 2.65 35.28 3.16
416 417 4.042187 GGTGGGCTCTTATCCATATGAAGT 59.958 45.833 3.65 0.00 35.28 3.01
417 418 4.566488 GGGTGGGCTCTTATCCATATGAAG 60.566 50.000 3.65 0.08 35.28 3.02
418 419 3.330701 GGGTGGGCTCTTATCCATATGAA 59.669 47.826 3.65 0.00 35.28 2.57
419 420 2.912956 GGGTGGGCTCTTATCCATATGA 59.087 50.000 3.65 0.00 35.28 2.15
420 421 2.355108 CGGGTGGGCTCTTATCCATATG 60.355 54.545 0.00 0.00 35.28 1.78
421 422 1.909302 CGGGTGGGCTCTTATCCATAT 59.091 52.381 0.00 0.00 35.28 1.78
422 423 1.348064 CGGGTGGGCTCTTATCCATA 58.652 55.000 0.00 0.00 35.28 2.74
423 424 2.056906 GCGGGTGGGCTCTTATCCAT 62.057 60.000 0.00 0.00 35.28 3.41
424 425 2.742116 GCGGGTGGGCTCTTATCCA 61.742 63.158 0.00 0.00 0.00 3.41
425 426 2.111251 GCGGGTGGGCTCTTATCC 59.889 66.667 0.00 0.00 0.00 2.59
426 427 0.179018 ATTGCGGGTGGGCTCTTATC 60.179 55.000 0.00 0.00 0.00 1.75
427 428 0.466189 CATTGCGGGTGGGCTCTTAT 60.466 55.000 0.00 0.00 0.00 1.73
428 429 1.077787 CATTGCGGGTGGGCTCTTA 60.078 57.895 0.00 0.00 0.00 2.10
429 430 2.361610 CATTGCGGGTGGGCTCTT 60.362 61.111 0.00 0.00 0.00 2.85
430 431 4.431131 CCATTGCGGGTGGGCTCT 62.431 66.667 0.00 0.00 32.98 4.09
431 432 4.424711 TCCATTGCGGGTGGGCTC 62.425 66.667 2.49 0.00 37.34 4.70
432 433 4.431131 CTCCATTGCGGGTGGGCT 62.431 66.667 2.49 0.00 37.34 5.19
441 442 0.169009 GAACAACTCGCCTCCATTGC 59.831 55.000 0.00 0.00 0.00 3.56
442 443 0.804989 GGAACAACTCGCCTCCATTG 59.195 55.000 0.00 0.00 0.00 2.82
443 444 0.693049 AGGAACAACTCGCCTCCATT 59.307 50.000 0.00 0.00 0.00 3.16
444 445 0.250513 GAGGAACAACTCGCCTCCAT 59.749 55.000 0.00 0.00 41.84 3.41
445 446 1.671742 GAGGAACAACTCGCCTCCA 59.328 57.895 0.00 0.00 41.84 3.86
446 447 4.600207 GAGGAACAACTCGCCTCC 57.400 61.111 0.00 0.00 41.84 4.30
452 453 1.080025 CGACCCCGAGGAACAACTC 60.080 63.158 0.00 0.00 38.22 3.01
453 454 1.117142 TTCGACCCCGAGGAACAACT 61.117 55.000 0.00 0.00 46.39 3.16
454 455 0.669625 CTTCGACCCCGAGGAACAAC 60.670 60.000 0.00 0.00 46.39 3.32
455 456 1.669440 CTTCGACCCCGAGGAACAA 59.331 57.895 0.00 0.00 46.39 2.83
456 457 2.939261 GCTTCGACCCCGAGGAACA 61.939 63.158 0.00 0.00 46.39 3.18
457 458 2.125633 GCTTCGACCCCGAGGAAC 60.126 66.667 0.00 0.00 46.39 3.62
458 459 1.987855 ATGCTTCGACCCCGAGGAA 60.988 57.895 0.00 0.00 46.39 3.36
459 460 2.363795 ATGCTTCGACCCCGAGGA 60.364 61.111 0.00 0.00 46.39 3.71
460 461 2.202932 CATGCTTCGACCCCGAGG 60.203 66.667 0.00 0.00 46.39 4.63
461 462 2.032860 ATCCATGCTTCGACCCCGAG 62.033 60.000 0.00 0.00 46.39 4.63
462 463 2.028125 GATCCATGCTTCGACCCCGA 62.028 60.000 0.00 0.00 43.96 5.14
463 464 1.595382 GATCCATGCTTCGACCCCG 60.595 63.158 0.00 0.00 37.07 5.73
464 465 0.533755 CTGATCCATGCTTCGACCCC 60.534 60.000 0.00 0.00 0.00 4.95
465 466 0.179000 ACTGATCCATGCTTCGACCC 59.821 55.000 0.00 0.00 0.00 4.46
466 467 1.293924 CACTGATCCATGCTTCGACC 58.706 55.000 0.00 0.00 0.00 4.79
467 468 0.654683 GCACTGATCCATGCTTCGAC 59.345 55.000 10.29 0.00 38.84 4.20
468 469 0.462581 GGCACTGATCCATGCTTCGA 60.463 55.000 15.60 0.00 41.74 3.71
469 470 1.769098 CGGCACTGATCCATGCTTCG 61.769 60.000 15.60 9.43 41.74 3.79
470 471 2.020131 CGGCACTGATCCATGCTTC 58.980 57.895 15.60 2.50 41.74 3.86
471 472 2.117156 GCGGCACTGATCCATGCTT 61.117 57.895 15.60 0.00 41.74 3.91
472 473 2.515523 GCGGCACTGATCCATGCT 60.516 61.111 15.60 0.00 41.74 3.79
473 474 2.515523 AGCGGCACTGATCCATGC 60.516 61.111 1.45 9.29 41.29 4.06
482 483 0.391661 ATCGAATTGTCAGCGGCACT 60.392 50.000 1.45 0.00 0.00 4.40
483 484 1.286501 TATCGAATTGTCAGCGGCAC 58.713 50.000 1.45 0.00 0.00 5.01
484 485 2.238942 ATATCGAATTGTCAGCGGCA 57.761 45.000 1.45 0.00 0.00 5.69
485 486 2.287915 ACAATATCGAATTGTCAGCGGC 59.712 45.455 15.64 0.00 37.69 6.53
486 487 5.845985 ATACAATATCGAATTGTCAGCGG 57.154 39.130 21.28 1.80 41.81 5.52
487 488 8.487970 AGTTTATACAATATCGAATTGTCAGCG 58.512 33.333 21.28 0.00 41.81 5.18
488 489 9.586150 CAGTTTATACAATATCGAATTGTCAGC 57.414 33.333 21.28 12.94 41.81 4.26
489 490 9.586150 GCAGTTTATACAATATCGAATTGTCAG 57.414 33.333 21.28 10.55 41.81 3.51
490 491 8.556194 GGCAGTTTATACAATATCGAATTGTCA 58.444 33.333 21.28 12.65 41.81 3.58
491 492 8.556194 TGGCAGTTTATACAATATCGAATTGTC 58.444 33.333 21.28 11.89 41.81 3.18
492 493 8.445275 TGGCAGTTTATACAATATCGAATTGT 57.555 30.769 21.34 21.34 43.74 2.71
493 494 9.333497 CATGGCAGTTTATACAATATCGAATTG 57.667 33.333 14.68 14.68 35.29 2.32
494 495 9.066892 ACATGGCAGTTTATACAATATCGAATT 57.933 29.630 0.00 0.00 0.00 2.17
495 496 8.621532 ACATGGCAGTTTATACAATATCGAAT 57.378 30.769 0.00 0.00 0.00 3.34
496 497 9.549078 TTACATGGCAGTTTATACAATATCGAA 57.451 29.630 0.00 0.00 0.00 3.71
497 498 9.549078 TTTACATGGCAGTTTATACAATATCGA 57.451 29.630 0.00 0.00 0.00 3.59
508 509 9.959749 CTAGAAAAAGTTTTACATGGCAGTTTA 57.040 29.630 0.24 0.00 0.00 2.01
509 510 8.691797 TCTAGAAAAAGTTTTACATGGCAGTTT 58.308 29.630 0.24 0.00 0.00 2.66
510 511 8.232913 TCTAGAAAAAGTTTTACATGGCAGTT 57.767 30.769 0.24 0.00 0.00 3.16
511 512 7.817418 TCTAGAAAAAGTTTTACATGGCAGT 57.183 32.000 0.24 0.00 0.00 4.40
512 513 9.528018 TTTTCTAGAAAAAGTTTTACATGGCAG 57.472 29.630 24.89 0.00 37.35 4.85
513 514 9.877178 TTTTTCTAGAAAAAGTTTTACATGGCA 57.123 25.926 30.56 10.99 43.08 4.92
527 528 8.954950 TTTCACATGGCAATTTTTCTAGAAAA 57.045 26.923 23.65 23.65 38.40 2.29
528 529 8.954950 TTTTCACATGGCAATTTTTCTAGAAA 57.045 26.923 13.99 13.99 0.00 2.52
529 530 8.954950 TTTTTCACATGGCAATTTTTCTAGAA 57.045 26.923 0.00 0.00 0.00 2.10
553 554 7.554476 GGTATTGCATTCTAGTCTCTCCTTTTT 59.446 37.037 0.00 0.00 0.00 1.94
554 555 7.051000 GGTATTGCATTCTAGTCTCTCCTTTT 58.949 38.462 0.00 0.00 0.00 2.27
555 556 6.156949 TGGTATTGCATTCTAGTCTCTCCTTT 59.843 38.462 0.00 0.00 0.00 3.11
556 557 5.663106 TGGTATTGCATTCTAGTCTCTCCTT 59.337 40.000 0.00 0.00 0.00 3.36
557 558 5.211973 TGGTATTGCATTCTAGTCTCTCCT 58.788 41.667 0.00 0.00 0.00 3.69
558 559 5.537300 TGGTATTGCATTCTAGTCTCTCC 57.463 43.478 0.00 0.00 0.00 3.71
559 560 7.550906 ACTTTTGGTATTGCATTCTAGTCTCTC 59.449 37.037 0.00 0.00 0.00 3.20
560 561 7.335422 CACTTTTGGTATTGCATTCTAGTCTCT 59.665 37.037 0.00 0.00 0.00 3.10
561 562 7.334421 TCACTTTTGGTATTGCATTCTAGTCTC 59.666 37.037 0.00 0.00 0.00 3.36
562 563 7.168219 TCACTTTTGGTATTGCATTCTAGTCT 58.832 34.615 0.00 0.00 0.00 3.24
563 564 7.377766 TCACTTTTGGTATTGCATTCTAGTC 57.622 36.000 0.00 0.00 0.00 2.59
564 565 7.759489 TTCACTTTTGGTATTGCATTCTAGT 57.241 32.000 0.00 0.00 0.00 2.57
565 566 9.474920 TTTTTCACTTTTGGTATTGCATTCTAG 57.525 29.630 0.00 0.00 0.00 2.43
630 631 2.452937 GGGGGAGGAAAGGGGATCG 61.453 68.421 0.00 0.00 0.00 3.69
821 875 3.204827 TAGCGTCCGCCGGAGTAC 61.205 66.667 5.82 0.00 43.17 2.73
854 909 3.432051 GATCCGTCCGCAGTGAGGG 62.432 68.421 13.43 3.61 40.78 4.30
855 910 2.105128 GATCCGTCCGCAGTGAGG 59.895 66.667 6.56 6.56 0.00 3.86
864 919 1.006805 CGAGCTGATGGATCCGTCC 60.007 63.158 27.65 15.27 45.31 4.79
865 920 0.318275 GACGAGCTGATGGATCCGTC 60.318 60.000 24.82 24.82 31.37 4.79
866 921 0.753479 AGACGAGCTGATGGATCCGT 60.753 55.000 6.04 6.04 0.00 4.69
954 1044 2.737830 GCCTGGCTAGATCGGGAC 59.262 66.667 12.43 3.83 32.49 4.46
993 1091 4.547367 CCGGGCTTCATCGTCCCC 62.547 72.222 0.00 0.00 36.69 4.81
1119 1222 3.403038 CTTGTTGAACTGGTACTGGAGG 58.597 50.000 0.00 0.00 0.00 4.30
1191 1321 4.554363 CTCTGGTACGAGGCGGCG 62.554 72.222 0.51 0.51 37.29 6.46
1392 1522 2.362397 GGCACATACCAAGAGATCGAGA 59.638 50.000 0.00 0.00 0.00 4.04
1439 1990 6.352516 CCAAATCTATGGCTTCTAACTCAGT 58.647 40.000 0.00 0.00 32.78 3.41
1578 2485 6.966021 TGCACCACTAAATCAAAACTAAGAC 58.034 36.000 0.00 0.00 0.00 3.01
1629 2536 4.961438 ACCAATTCCAGTTTCAGCATTT 57.039 36.364 0.00 0.00 0.00 2.32
1742 2649 7.430441 ACAATGGTAGCGAAAAACAGTTAATT 58.570 30.769 0.00 0.00 0.00 1.40
1745 2652 6.380095 AACAATGGTAGCGAAAAACAGTTA 57.620 33.333 0.00 0.00 0.00 2.24
1831 2739 1.740380 CGTAGTGCCAAGGTCATCCTG 60.740 57.143 0.00 0.00 44.35 3.86
2068 2980 9.226345 CGATTCTTCATAGAAAATTACAAAGGC 57.774 33.333 0.00 0.00 43.32 4.35
2416 3444 2.035626 ATCCCAACAAGTGCCCCG 59.964 61.111 0.00 0.00 0.00 5.73
2458 3486 1.167851 GTGTGGCATTGAGCTTAGCA 58.832 50.000 7.07 0.00 44.79 3.49
2515 3543 4.142182 CCAACTCCAATTGTCAACACTTGT 60.142 41.667 4.43 0.00 35.53 3.16
2548 3576 0.980423 GCTCTCCAACCTCAACCTCT 59.020 55.000 0.00 0.00 0.00 3.69
2931 4991 1.067565 TGATGGTCTCGACAAGTCTGC 60.068 52.381 0.00 0.00 0.00 4.26
2956 5016 5.179452 ACTAGTGGTTTCCATACTGCATT 57.821 39.130 0.00 0.00 35.28 3.56
3513 6362 4.574599 AGGTTGAAAAGACATGCTCAAC 57.425 40.909 12.93 12.93 44.44 3.18
3791 6666 2.151202 GGAACACAAAAGCGATGGAGA 58.849 47.619 0.00 0.00 0.00 3.71
4161 7375 0.684535 TGATGCGAGGTCCTCACAAA 59.315 50.000 19.15 5.72 0.00 2.83
4396 7645 2.203139 CACCACGGGAGTTGCACA 60.203 61.111 0.00 0.00 44.67 4.57
4540 7792 0.320771 GCAGAGGCCAAGAAACGAGA 60.321 55.000 5.01 0.00 0.00 4.04
4548 7800 1.376942 CTCCACTGCAGAGGCCAAG 60.377 63.158 23.96 13.29 40.13 3.61
4622 7874 2.030562 CCAAAGCACCGACGGACT 59.969 61.111 23.38 14.62 0.00 3.85
4724 7977 1.839191 GCCAGATGCACCCTATGGA 59.161 57.895 3.63 0.00 40.77 3.41
5048 9854 3.498774 ACTTTGCTGGTCATCTCAACT 57.501 42.857 0.00 0.00 0.00 3.16
5547 14694 5.287042 TCTCCTTCCTACTCCTAGTAGTCA 58.713 45.833 11.96 0.00 45.12 3.41
5705 14861 0.692476 TGGACAGGATGAACCCACAG 59.308 55.000 0.00 0.00 39.69 3.66
5976 15143 7.554835 ACGTGATATTTATGTAAAAGAAGCCCA 59.445 33.333 0.00 0.00 0.00 5.36
6484 15667 8.635765 AATGTGGCTAAATTTCCGTATATCAT 57.364 30.769 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.