Multiple sequence alignment - TraesCS7B01G430800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G430800 chr7B 100.000 3834 0 0 1 3834 699183336 699179503 0.000000e+00 7081.0
1 TraesCS7B01G430800 chr7B 93.436 2407 112 15 937 3321 699141480 699139098 0.000000e+00 3528.0
2 TraesCS7B01G430800 chr7B 91.086 2625 155 33 744 3321 699145377 699142785 0.000000e+00 3478.0
3 TraesCS7B01G430800 chr7B 91.048 2625 156 33 744 3321 698655067 698652475 0.000000e+00 3472.0
4 TraesCS7B01G430800 chr7B 90.646 2630 159 33 744 3321 694364416 694361822 0.000000e+00 3413.0
5 TraesCS7B01G430800 chr7B 93.703 2112 97 21 912 3000 696145148 696143050 0.000000e+00 3131.0
6 TraesCS7B01G430800 chr7B 87.256 1483 112 36 1881 3321 693621424 693619977 0.000000e+00 1620.0
7 TraesCS7B01G430800 chr7B 87.435 955 93 18 912 1855 693622544 693621606 0.000000e+00 1074.0
8 TraesCS7B01G430800 chr7B 84.556 518 48 17 121 627 694364920 694364424 5.760000e-133 484.0
9 TraesCS7B01G430800 chr7B 85.784 408 40 13 121 516 699142598 699142197 2.130000e-112 416.0
10 TraesCS7B01G430800 chr7B 89.349 338 25 7 121 456 696145815 696145487 7.660000e-112 414.0
11 TraesCS7B01G430800 chr7B 82.099 486 55 16 121 591 694189326 694189794 1.670000e-103 387.0
12 TraesCS7B01G430800 chr7B 91.701 241 20 0 3594 3834 698652241 698652001 6.140000e-88 335.0
13 TraesCS7B01G430800 chr7B 92.105 228 18 0 3607 3834 693619744 693619517 4.780000e-84 322.0
14 TraesCS7B01G430800 chr7B 90.323 248 16 4 3594 3834 699138868 699138622 6.180000e-83 318.0
15 TraesCS7B01G430800 chr7B 87.037 270 17 11 121 387 693313294 693313548 4.850000e-74 289.0
16 TraesCS7B01G430800 chr7B 90.741 162 14 1 3316 3476 694361763 694361602 8.340000e-52 215.0
17 TraesCS7B01G430800 chr7B 90.741 162 14 1 3316 3476 698652404 698652243 8.340000e-52 215.0
18 TraesCS7B01G430800 chr7B 90.683 161 12 2 3316 3476 699139027 699138870 1.080000e-50 211.0
19 TraesCS7B01G430800 chr7B 90.123 162 15 1 3316 3476 693619906 693619745 3.880000e-50 209.0
20 TraesCS7B01G430800 chr7B 96.522 115 4 0 624 738 523681967 523682081 1.410000e-44 191.0
21 TraesCS7B01G430800 chr7B 92.000 125 9 1 3476 3600 383736130 383736253 1.420000e-39 174.0
22 TraesCS7B01G430800 chr7B 91.489 94 8 0 3316 3409 696142503 696142410 3.110000e-26 130.0
23 TraesCS7B01G430800 chr7B 76.066 305 35 17 335 627 697024502 697024780 1.450000e-24 124.0
24 TraesCS7B01G430800 chr7B 87.000 100 13 0 523 622 699141844 699141745 3.130000e-21 113.0
25 TraesCS7B01G430800 chr7B 92.453 53 4 0 1 53 694434578 694434526 4.110000e-10 76.8
26 TraesCS7B01G430800 chr7B 90.196 51 1 2 3594 3640 696142365 696142315 3.200000e-06 63.9
27 TraesCS7B01G430800 chr7D 89.203 2621 179 38 744 3308 608199319 608196747 0.000000e+00 3177.0
28 TraesCS7B01G430800 chr7D 89.207 2233 163 32 735 2918 514749725 514747522 0.000000e+00 2717.0
29 TraesCS7B01G430800 chr7D 89.360 1109 86 11 913 1998 600232967 600234066 0.000000e+00 1365.0
30 TraesCS7B01G430800 chr7D 87.710 1188 89 28 735 1872 610532167 610533347 0.000000e+00 1332.0
31 TraesCS7B01G430800 chr7D 87.380 1038 88 20 1993 3000 610533556 610534580 0.000000e+00 1151.0
32 TraesCS7B01G430800 chr7D 87.897 504 38 12 2996 3476 600235278 600235781 4.300000e-159 571.0
33 TraesCS7B01G430800 chr7D 91.912 408 31 2 2916 3321 514747037 514746630 1.550000e-158 569.0
34 TraesCS7B01G430800 chr7D 87.283 519 36 17 121 623 610531574 610532078 2.000000e-157 566.0
35 TraesCS7B01G430800 chr7D 85.009 547 45 19 121 635 514750261 514749720 4.390000e-144 521.0
36 TraesCS7B01G430800 chr7D 92.722 316 21 2 2996 3310 610534742 610535056 4.520000e-124 455.0
37 TraesCS7B01G430800 chr7D 85.841 339 31 9 121 456 608199813 608199489 1.020000e-90 344.0
38 TraesCS7B01G430800 chr7D 92.105 152 12 0 3683 3834 610535324 610535475 8.340000e-52 215.0
39 TraesCS7B01G430800 chr7D 90.683 161 12 1 3316 3476 610535113 610535270 1.080000e-50 211.0
40 TraesCS7B01G430800 chr7D 92.857 140 7 1 3695 3834 600235845 600235981 2.340000e-47 200.0
41 TraesCS7B01G430800 chr7D 90.541 148 10 1 3686 3833 514746379 514746236 3.910000e-45 193.0
42 TraesCS7B01G430800 chr7D 89.320 103 8 1 3374 3476 514746535 514746436 4.020000e-25 126.0
43 TraesCS7B01G430800 chr7D 84.706 85 7 2 521 599 608199432 608199348 3.180000e-11 80.5
44 TraesCS7B01G430800 chr7D 90.196 51 1 2 3594 3640 514746434 514746384 3.200000e-06 63.9
45 TraesCS7B01G430800 chr7D 90.196 51 1 2 3594 3640 600235783 600235833 3.200000e-06 63.9
46 TraesCS7B01G430800 chr7D 90.196 51 1 2 3594 3640 610535272 610535322 3.200000e-06 63.9
47 TraesCS7B01G430800 chr7A 85.138 2678 229 83 737 3321 700504198 700506799 0.000000e+00 2584.0
48 TraesCS7B01G430800 chr7A 88.374 1359 106 28 2002 3321 700208110 700206765 0.000000e+00 1587.0
49 TraesCS7B01G430800 chr7A 86.497 511 48 11 121 630 700503710 700504200 3.370000e-150 542.0
50 TraesCS7B01G430800 chr7A 90.204 245 20 2 3594 3834 700206535 700206291 2.220000e-82 316.0
51 TraesCS7B01G430800 chr7A 94.410 161 9 0 3316 3476 700506870 700507030 8.220000e-62 248.0
52 TraesCS7B01G430800 chr7A 91.613 155 13 0 3320 3474 700206693 700206539 8.340000e-52 215.0
53 TraesCS7B01G430800 chr7A 91.057 123 11 0 3472 3594 375886614 375886492 2.370000e-37 167.0
54 TraesCS7B01G430800 chr4A 97.174 1097 27 3 1685 2781 661823500 661822408 0.000000e+00 1851.0
55 TraesCS7B01G430800 chr4A 90.972 864 49 13 850 1687 661826058 661825198 0.000000e+00 1136.0
56 TraesCS7B01G430800 chr4A 90.213 235 14 4 3594 3824 661821714 661821485 8.050000e-77 298.0
57 TraesCS7B01G430800 chr4A 91.667 120 10 0 3476 3595 669084078 669083959 2.370000e-37 167.0
58 TraesCS7B01G430800 chr4D 87.441 422 39 4 2908 3321 461482528 461482943 1.250000e-129 473.0
59 TraesCS7B01G430800 chr4D 94.309 123 7 0 616 738 60634337 60634459 5.060000e-44 189.0
60 TraesCS7B01G430800 chr2A 97.391 115 3 0 624 738 762743757 762743643 3.020000e-46 196.0
61 TraesCS7B01G430800 chr2A 92.913 127 8 1 632 758 1902390 1902515 2.350000e-42 183.0
62 TraesCS7B01G430800 chr3B 97.345 113 3 0 626 738 454671377 454671489 3.910000e-45 193.0
63 TraesCS7B01G430800 chr3B 92.000 125 8 2 3473 3596 52425266 52425389 1.420000e-39 174.0
64 TraesCS7B01G430800 chrUn 95.763 118 5 0 632 749 91488908 91489025 1.410000e-44 191.0
65 TraesCS7B01G430800 chrUn 93.388 121 8 0 3473 3593 112678690 112678810 3.040000e-41 180.0
66 TraesCS7B01G430800 chr3D 96.522 115 4 0 624 738 43587335 43587221 1.410000e-44 191.0
67 TraesCS7B01G430800 chr3D 94.309 123 7 0 616 738 336616931 336616809 5.060000e-44 189.0
68 TraesCS7B01G430800 chr5D 94.309 123 7 0 616 738 293988684 293988806 5.060000e-44 189.0
69 TraesCS7B01G430800 chr2B 92.800 125 8 1 3476 3600 643184735 643184612 3.040000e-41 180.0
70 TraesCS7B01G430800 chr2B 91.200 125 11 0 3471 3595 546936509 546936633 1.830000e-38 171.0
71 TraesCS7B01G430800 chr2B 91.667 120 10 0 3475 3594 707570117 707570236 2.370000e-37 167.0
72 TraesCS7B01G430800 chr2B 90.476 126 10 2 3469 3594 549190459 549190582 8.520000e-37 165.0
73 TraesCS7B01G430800 chr5B 91.736 121 10 0 3474 3594 544489228 544489108 6.590000e-38 169.0
74 TraesCS7B01G430800 chr4B 91.597 119 10 0 3475 3593 392368024 392367906 8.520000e-37 165.0
75 TraesCS7B01G430800 chr6B 82.873 181 23 2 3610 3787 309065744 309065919 5.130000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G430800 chr7B 699179503 699183336 3833 True 7081.000000 7081 100.000000 1 3834 1 chr7B.!!$R2 3833
1 TraesCS7B01G430800 chr7B 694361602 694364920 3318 True 1370.666667 3413 88.647667 121 3476 3 chr7B.!!$R4 3355
2 TraesCS7B01G430800 chr7B 699138622 699145377 6755 True 1344.000000 3528 89.718667 121 3834 6 chr7B.!!$R7 3713
3 TraesCS7B01G430800 chr7B 698652001 698655067 3066 True 1340.666667 3472 91.163333 744 3834 3 chr7B.!!$R6 3090
4 TraesCS7B01G430800 chr7B 696142315 696145815 3500 True 934.725000 3131 91.184250 121 3640 4 chr7B.!!$R5 3519
5 TraesCS7B01G430800 chr7B 693619517 693622544 3027 True 806.250000 1620 89.229750 912 3834 4 chr7B.!!$R3 2922
6 TraesCS7B01G430800 chr7D 608196747 608199813 3066 True 1200.500000 3177 86.583333 121 3308 3 chr7D.!!$R2 3187
7 TraesCS7B01G430800 chr7D 514746236 514750261 4025 True 698.316667 2717 89.364167 121 3833 6 chr7D.!!$R1 3712
8 TraesCS7B01G430800 chr7D 610531574 610535475 3901 False 570.557143 1332 89.725571 121 3834 7 chr7D.!!$F2 3713
9 TraesCS7B01G430800 chr7D 600232967 600235981 3014 False 549.975000 1365 90.077500 913 3834 4 chr7D.!!$F1 2921
10 TraesCS7B01G430800 chr7A 700503710 700507030 3320 False 1124.666667 2584 88.681667 121 3476 3 chr7A.!!$F1 3355
11 TraesCS7B01G430800 chr7A 700206291 700208110 1819 True 706.000000 1587 90.063667 2002 3834 3 chr7A.!!$R2 1832
12 TraesCS7B01G430800 chr4A 661821485 661826058 4573 True 1095.000000 1851 92.786333 850 3824 3 chr4A.!!$R2 2974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.037326 TGCAATGGTGACGACCTCTC 60.037 55.0 0.0 0.00 43.58 3.20 F
372 383 0.106149 GGTGTTATGTCTAGGCGGGG 59.894 60.0 0.0 0.00 0.00 5.73 F
972 1053 0.729116 CGTGCCCTGTTTGCTATGAG 59.271 55.0 0.0 0.00 0.00 2.90 F
2627 8433 0.248094 CGTCAATCGTCTAGCGCTGA 60.248 55.0 22.9 12.92 41.07 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1139 4924 2.859806 GCTGGTGAATGACTTGTTGCAC 60.860 50.000 0.00 0.0 0.00 4.57 R
1433 5241 3.689897 TTTTGTTGCAACACGAAAACG 57.310 38.095 31.17 0.0 38.92 3.60 R
2646 8452 0.902531 GCTAGGTAACCTCTGCCACA 59.097 55.000 0.00 0.0 34.61 4.17 R
3576 10159 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.367840 GCTATGACTACCAGGGCGG 59.632 63.158 0.00 0.00 42.50 6.13
19 20 1.113517 GCTATGACTACCAGGGCGGA 61.114 60.000 0.00 0.00 38.63 5.54
20 21 0.962489 CTATGACTACCAGGGCGGAG 59.038 60.000 0.00 0.00 38.63 4.63
21 22 0.554305 TATGACTACCAGGGCGGAGA 59.446 55.000 0.00 0.00 38.63 3.71
22 23 0.105453 ATGACTACCAGGGCGGAGAT 60.105 55.000 0.00 0.00 38.63 2.75
23 24 1.043116 TGACTACCAGGGCGGAGATG 61.043 60.000 0.00 0.00 38.63 2.90
24 25 2.370647 GACTACCAGGGCGGAGATGC 62.371 65.000 0.00 0.00 38.63 3.91
25 26 2.041922 TACCAGGGCGGAGATGCT 60.042 61.111 0.00 0.00 38.63 3.79
26 27 2.374830 CTACCAGGGCGGAGATGCTG 62.375 65.000 0.00 0.00 38.63 4.41
27 28 3.790437 CCAGGGCGGAGATGCTGT 61.790 66.667 0.00 0.00 36.56 4.40
28 29 2.513204 CAGGGCGGAGATGCTGTG 60.513 66.667 0.00 0.00 34.52 3.66
29 30 3.790437 AGGGCGGAGATGCTGTGG 61.790 66.667 0.00 0.00 34.52 4.17
30 31 4.101448 GGGCGGAGATGCTGTGGT 62.101 66.667 0.00 0.00 34.52 4.16
31 32 2.821366 GGCGGAGATGCTGTGGTG 60.821 66.667 0.00 0.00 34.52 4.17
32 33 2.821366 GCGGAGATGCTGTGGTGG 60.821 66.667 0.00 0.00 0.00 4.61
33 34 2.124983 CGGAGATGCTGTGGTGGG 60.125 66.667 0.00 0.00 0.00 4.61
34 35 2.959484 CGGAGATGCTGTGGTGGGT 61.959 63.158 0.00 0.00 0.00 4.51
35 36 1.380302 GGAGATGCTGTGGTGGGTT 59.620 57.895 0.00 0.00 0.00 4.11
36 37 0.962356 GGAGATGCTGTGGTGGGTTG 60.962 60.000 0.00 0.00 0.00 3.77
37 38 1.589716 GAGATGCTGTGGTGGGTTGC 61.590 60.000 0.00 0.00 0.00 4.17
38 39 1.902918 GATGCTGTGGTGGGTTGCA 60.903 57.895 0.00 0.00 38.05 4.08
39 40 1.457267 ATGCTGTGGTGGGTTGCAA 60.457 52.632 0.00 0.00 37.20 4.08
40 41 0.832983 ATGCTGTGGTGGGTTGCAAT 60.833 50.000 0.59 0.00 37.20 3.56
41 42 1.005867 GCTGTGGTGGGTTGCAATG 60.006 57.895 0.59 0.00 0.00 2.82
42 43 1.667151 CTGTGGTGGGTTGCAATGG 59.333 57.895 0.59 0.00 0.00 3.16
43 44 1.075674 TGTGGTGGGTTGCAATGGT 60.076 52.632 0.59 0.00 0.00 3.55
44 45 1.367102 GTGGTGGGTTGCAATGGTG 59.633 57.895 0.59 0.00 0.00 4.17
45 46 1.112315 GTGGTGGGTTGCAATGGTGA 61.112 55.000 0.59 0.00 0.00 4.02
46 47 1.112315 TGGTGGGTTGCAATGGTGAC 61.112 55.000 0.59 0.00 0.00 3.67
47 48 1.285641 GTGGGTTGCAATGGTGACG 59.714 57.895 0.59 0.00 0.00 4.35
48 49 1.149401 TGGGTTGCAATGGTGACGA 59.851 52.632 0.59 0.00 0.00 4.20
49 50 1.169661 TGGGTTGCAATGGTGACGAC 61.170 55.000 0.59 0.00 0.00 4.34
50 51 1.579429 GGTTGCAATGGTGACGACC 59.421 57.895 0.59 0.00 43.48 4.79
51 52 0.889186 GGTTGCAATGGTGACGACCT 60.889 55.000 0.59 0.00 43.58 3.85
52 53 0.517316 GTTGCAATGGTGACGACCTC 59.483 55.000 0.59 0.00 43.58 3.85
53 54 0.396435 TTGCAATGGTGACGACCTCT 59.604 50.000 0.00 0.00 43.58 3.69
54 55 0.037326 TGCAATGGTGACGACCTCTC 60.037 55.000 0.00 0.00 43.58 3.20
55 56 1.078759 GCAATGGTGACGACCTCTCG 61.079 60.000 0.00 0.00 43.58 4.04
56 57 1.078759 CAATGGTGACGACCTCTCGC 61.079 60.000 0.00 0.00 44.33 5.03
57 58 1.251527 AATGGTGACGACCTCTCGCT 61.252 55.000 0.00 0.00 44.33 4.93
58 59 1.251527 ATGGTGACGACCTCTCGCTT 61.252 55.000 0.00 0.00 44.33 4.68
59 60 1.444553 GGTGACGACCTCTCGCTTG 60.445 63.158 0.00 0.00 44.33 4.01
60 61 1.579932 GTGACGACCTCTCGCTTGA 59.420 57.895 0.00 0.00 44.33 3.02
61 62 0.171455 GTGACGACCTCTCGCTTGAT 59.829 55.000 0.00 0.00 44.33 2.57
62 63 0.452184 TGACGACCTCTCGCTTGATC 59.548 55.000 0.00 0.00 44.33 2.92
63 64 0.590230 GACGACCTCTCGCTTGATCG 60.590 60.000 0.00 0.00 44.33 3.69
64 65 1.941734 CGACCTCTCGCTTGATCGC 60.942 63.158 0.00 0.00 31.91 4.58
65 66 1.435515 GACCTCTCGCTTGATCGCT 59.564 57.895 0.00 0.00 0.00 4.93
66 67 0.869454 GACCTCTCGCTTGATCGCTG 60.869 60.000 0.00 0.00 0.00 5.18
67 68 1.591059 CCTCTCGCTTGATCGCTGG 60.591 63.158 0.00 0.00 0.00 4.85
68 69 1.435105 CTCTCGCTTGATCGCTGGA 59.565 57.895 0.00 0.00 0.00 3.86
69 70 0.179127 CTCTCGCTTGATCGCTGGAA 60.179 55.000 0.00 0.00 0.00 3.53
70 71 0.179127 TCTCGCTTGATCGCTGGAAG 60.179 55.000 0.00 0.00 0.00 3.46
89 90 4.944372 GGCGATGGCGGAGGTACG 62.944 72.222 0.00 0.00 41.24 3.67
90 91 3.896133 GCGATGGCGGAGGTACGA 61.896 66.667 0.00 0.00 38.16 3.43
91 92 2.331805 CGATGGCGGAGGTACGAG 59.668 66.667 0.00 0.00 35.47 4.18
92 93 2.027751 GATGGCGGAGGTACGAGC 59.972 66.667 0.00 0.00 35.47 5.03
93 94 3.825833 GATGGCGGAGGTACGAGCG 62.826 68.421 0.00 0.00 35.47 5.03
102 103 3.766691 GTACGAGCGGGGCCTGAA 61.767 66.667 18.84 0.00 0.00 3.02
103 104 3.766691 TACGAGCGGGGCCTGAAC 61.767 66.667 18.84 7.87 0.00 3.18
109 110 2.825836 CGGGGCCTGAACAGCATC 60.826 66.667 6.48 0.00 0.00 3.91
110 111 2.679716 GGGGCCTGAACAGCATCT 59.320 61.111 0.84 0.00 0.00 2.90
111 112 1.452833 GGGGCCTGAACAGCATCTC 60.453 63.158 0.84 0.00 0.00 2.75
112 113 1.452833 GGGCCTGAACAGCATCTCC 60.453 63.158 0.84 0.00 0.00 3.71
113 114 1.817099 GGCCTGAACAGCATCTCCG 60.817 63.158 0.00 0.00 0.00 4.63
114 115 2.467826 GCCTGAACAGCATCTCCGC 61.468 63.158 0.00 0.00 0.00 5.54
115 116 1.817099 CCTGAACAGCATCTCCGCC 60.817 63.158 0.00 0.00 0.00 6.13
116 117 1.078918 CTGAACAGCATCTCCGCCA 60.079 57.895 0.00 0.00 0.00 5.69
117 118 0.463295 CTGAACAGCATCTCCGCCAT 60.463 55.000 0.00 0.00 0.00 4.40
118 119 0.745486 TGAACAGCATCTCCGCCATG 60.745 55.000 0.00 0.00 0.00 3.66
119 120 0.462581 GAACAGCATCTCCGCCATGA 60.463 55.000 0.00 0.00 0.00 3.07
295 300 4.017126 TCTCAGGAGAAGCAAGATAACGA 58.983 43.478 0.00 0.00 33.91 3.85
316 325 4.360027 GTGTGTGTCTGCGCGCTG 62.360 66.667 33.29 31.23 36.64 5.18
321 330 1.439365 GTGTCTGCGCGCTGAAAAG 60.439 57.895 36.86 23.73 0.00 2.27
332 342 0.960861 GCTGAAAAGAGGGGGAACGG 60.961 60.000 0.00 0.00 0.00 4.44
346 356 2.101209 GAACGGTTGTCGCACACCAG 62.101 60.000 0.00 0.00 43.89 4.00
372 383 0.106149 GGTGTTATGTCTAGGCGGGG 59.894 60.000 0.00 0.00 0.00 5.73
461 477 1.956477 GCAGAGCTTTTCAGTTTGGGA 59.044 47.619 0.00 0.00 0.00 4.37
468 484 3.243535 GCTTTTCAGTTTGGGAAGGTGAG 60.244 47.826 0.00 0.00 0.00 3.51
509 528 1.404986 CCGGTATTTGGCAACGAGAGA 60.405 52.381 0.00 0.00 42.51 3.10
517 536 4.801330 TTGGCAACGAGAGAGAAAGATA 57.199 40.909 0.00 0.00 42.51 1.98
518 537 5.344743 TTGGCAACGAGAGAGAAAGATAT 57.655 39.130 0.00 0.00 42.51 1.63
519 538 4.938080 TGGCAACGAGAGAGAAAGATATC 58.062 43.478 0.00 0.00 42.51 1.63
566 607 7.730084 TGGTTATATATCTGCTGATATCTGGC 58.270 38.462 24.41 15.22 42.89 4.85
572 613 4.333913 TCTGCTGATATCTGGCTTTCTC 57.666 45.455 17.39 0.47 0.00 2.87
577 618 4.706035 CTGATATCTGGCTTTCTCTTGCT 58.294 43.478 3.98 0.00 0.00 3.91
629 670 9.751542 TGCAATCTAGCTTCTACTCTTTAATAC 57.248 33.333 0.00 0.00 34.99 1.89
630 671 8.907685 GCAATCTAGCTTCTACTCTTTAATACG 58.092 37.037 0.00 0.00 0.00 3.06
631 672 9.953697 CAATCTAGCTTCTACTCTTTAATACGT 57.046 33.333 0.00 0.00 0.00 3.57
634 675 9.829507 TCTAGCTTCTACTCTTTAATACGTACT 57.170 33.333 0.00 0.00 0.00 2.73
636 677 7.929159 AGCTTCTACTCTTTAATACGTACTCC 58.071 38.462 0.00 0.00 0.00 3.85
637 678 7.013178 AGCTTCTACTCTTTAATACGTACTCCC 59.987 40.741 0.00 0.00 0.00 4.30
639 680 8.443953 TTCTACTCTTTAATACGTACTCCCTC 57.556 38.462 0.00 0.00 0.00 4.30
640 681 6.995091 TCTACTCTTTAATACGTACTCCCTCC 59.005 42.308 0.00 0.00 0.00 4.30
642 683 4.526970 TCTTTAATACGTACTCCCTCCGT 58.473 43.478 0.00 0.00 38.53 4.69
643 684 4.949856 TCTTTAATACGTACTCCCTCCGTT 59.050 41.667 0.00 0.00 36.12 4.44
644 685 4.900635 TTAATACGTACTCCCTCCGTTC 57.099 45.455 0.00 0.00 36.12 3.95
646 687 0.744414 TACGTACTCCCTCCGTTCGG 60.744 60.000 4.74 4.74 36.12 4.30
647 688 1.746615 CGTACTCCCTCCGTTCGGA 60.747 63.158 13.34 13.34 0.00 4.55
648 689 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
649 690 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
650 691 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
652 693 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
653 694 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
654 695 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
655 696 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
657 698 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
658 699 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
659 700 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
660 701 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
661 702 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
663 704 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
664 705 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
665 706 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
666 707 4.092821 TCGGAATTACTTGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
667 708 4.662145 GGAATTACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
668 709 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
670 711 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
671 712 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
673 714 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
674 715 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
675 716 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
676 717 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
677 718 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
678 719 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
679 720 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
680 721 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
699 740 9.440773 TCTAGACGTATTTTAGTTCTAGACACA 57.559 33.333 0.00 0.00 32.48 3.72
703 744 7.833786 ACGTATTTTAGTTCTAGACACATCCA 58.166 34.615 0.00 0.00 0.00 3.41
704 745 8.475639 ACGTATTTTAGTTCTAGACACATCCAT 58.524 33.333 0.00 0.00 0.00 3.41
708 749 8.561738 TTTTAGTTCTAGACACATCCATTTCC 57.438 34.615 0.00 0.00 0.00 3.13
709 750 4.759782 AGTTCTAGACACATCCATTTCCG 58.240 43.478 0.00 0.00 0.00 4.30
710 751 4.466370 AGTTCTAGACACATCCATTTCCGA 59.534 41.667 0.00 0.00 0.00 4.55
711 752 4.655762 TCTAGACACATCCATTTCCGAG 57.344 45.455 0.00 0.00 0.00 4.63
712 753 4.278310 TCTAGACACATCCATTTCCGAGA 58.722 43.478 0.00 0.00 0.00 4.04
713 754 3.252974 AGACACATCCATTTCCGAGAC 57.747 47.619 0.00 0.00 0.00 3.36
714 755 2.567169 AGACACATCCATTTCCGAGACA 59.433 45.455 0.00 0.00 0.00 3.41
715 756 3.007940 AGACACATCCATTTCCGAGACAA 59.992 43.478 0.00 0.00 0.00 3.18
716 757 3.338249 ACACATCCATTTCCGAGACAAG 58.662 45.455 0.00 0.00 0.00 3.16
717 758 3.244561 ACACATCCATTTCCGAGACAAGT 60.245 43.478 0.00 0.00 0.00 3.16
718 759 4.020573 ACACATCCATTTCCGAGACAAGTA 60.021 41.667 0.00 0.00 0.00 2.24
719 760 4.935205 CACATCCATTTCCGAGACAAGTAA 59.065 41.667 0.00 0.00 0.00 2.24
720 761 5.586243 CACATCCATTTCCGAGACAAGTAAT 59.414 40.000 0.00 0.00 0.00 1.89
721 762 6.094048 CACATCCATTTCCGAGACAAGTAATT 59.906 38.462 0.00 0.00 0.00 1.40
722 763 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
723 764 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
724 765 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
725 766 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
726 767 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
727 768 4.730949 TCCGAGACAAGTAATTCCGAAT 57.269 40.909 0.00 0.00 0.00 3.34
728 769 4.430007 TCCGAGACAAGTAATTCCGAATG 58.570 43.478 0.00 0.00 0.00 2.67
729 770 3.555956 CCGAGACAAGTAATTCCGAATGG 59.444 47.826 0.00 0.00 0.00 3.16
730 771 4.430007 CGAGACAAGTAATTCCGAATGGA 58.570 43.478 0.00 0.00 44.61 3.41
742 783 2.158505 TCCGAATGGAGGGAGTACTAGG 60.159 54.545 0.00 0.00 40.17 3.02
778 820 1.082117 CAGCGGTCGTGTATGGTTCC 61.082 60.000 0.00 0.00 0.00 3.62
842 893 2.353323 CGTTAAGGGTAAGCCAAGGTC 58.647 52.381 0.00 0.00 36.17 3.85
856 907 3.928375 GCCAAGGTCAATGTTTTGCATAG 59.072 43.478 0.00 0.00 36.67 2.23
880 931 3.056607 AGGTGTTTGATGTTATGCCAAGC 60.057 43.478 0.00 0.00 0.00 4.01
886 937 4.712051 TGATGTTATGCCAAGCTAGGAT 57.288 40.909 0.00 0.00 0.00 3.24
902 953 7.693969 AGCTAGGATTTTAATCATACCATGC 57.306 36.000 4.97 2.50 37.15 4.06
906 957 6.970484 AGGATTTTAATCATACCATGCGAAC 58.030 36.000 4.97 0.00 37.15 3.95
907 958 6.545666 AGGATTTTAATCATACCATGCGAACA 59.454 34.615 4.97 0.00 37.15 3.18
908 959 6.857964 GGATTTTAATCATACCATGCGAACAG 59.142 38.462 4.97 0.00 37.15 3.16
909 960 6.751514 TTTTAATCATACCATGCGAACAGT 57.248 33.333 0.00 0.00 0.00 3.55
910 961 6.751514 TTTAATCATACCATGCGAACAGTT 57.248 33.333 0.00 0.00 0.00 3.16
972 1053 0.729116 CGTGCCCTGTTTGCTATGAG 59.271 55.000 0.00 0.00 0.00 2.90
1019 1100 3.998341 GGCATGAACCTGTACGTCTAAAA 59.002 43.478 0.00 0.00 0.00 1.52
1025 1106 4.248691 ACCTGTACGTCTAAAAGTCCAC 57.751 45.455 0.00 0.00 0.00 4.02
1031 1112 4.985044 ACGTCTAAAAGTCCACGAATTG 57.015 40.909 0.00 0.00 36.14 2.32
1062 1147 1.951602 GCATGCATATCTGGTTGCTGA 59.048 47.619 14.21 0.00 39.60 4.26
1136 4921 1.076332 GGTCCGGATTCAAGTGTTCG 58.924 55.000 7.81 0.00 0.00 3.95
1139 4924 2.412089 GTCCGGATTCAAGTGTTCGAAG 59.588 50.000 7.81 0.00 0.00 3.79
1433 5241 3.366374 GCAGGTAAGATTTGGTGCTTCAC 60.366 47.826 0.00 0.00 0.00 3.18
1439 5247 3.964909 AGATTTGGTGCTTCACGTTTTC 58.035 40.909 0.00 0.00 34.83 2.29
2065 7826 1.071385 AGGGCTGATATTTCGAGGCTG 59.929 52.381 0.00 0.00 32.98 4.85
2072 7833 3.627577 TGATATTTCGAGGCTGCCTTTTC 59.372 43.478 24.26 11.28 31.76 2.29
2612 8418 4.340097 TGAGACAGGTAAAAGAAGTCGTCA 59.660 41.667 0.00 0.00 34.56 4.35
2627 8433 0.248094 CGTCAATCGTCTAGCGCTGA 60.248 55.000 22.90 12.92 41.07 4.26
2628 8434 1.471964 GTCAATCGTCTAGCGCTGAG 58.528 55.000 22.90 13.53 41.07 3.35
2630 8436 1.472878 TCAATCGTCTAGCGCTGAGTT 59.527 47.619 22.90 7.96 41.07 3.01
2631 8437 2.681344 TCAATCGTCTAGCGCTGAGTTA 59.319 45.455 22.90 2.75 41.07 2.24
2632 8438 3.039405 CAATCGTCTAGCGCTGAGTTAG 58.961 50.000 22.90 9.28 41.07 2.34
2633 8439 2.019948 TCGTCTAGCGCTGAGTTAGA 57.980 50.000 22.90 11.93 39.81 2.10
2636 8442 2.019948 TCTAGCGCTGAGTTAGACGA 57.980 50.000 22.90 0.00 37.68 4.20
2646 8452 5.164954 GCTGAGTTAGACGATCTTTTCTGT 58.835 41.667 0.00 0.00 0.00 3.41
3079 9561 4.454728 ACAATTGTGTTGTTTCTGCACT 57.545 36.364 11.07 0.00 32.58 4.40
3257 9753 8.869109 TCCAATTTTTACAGAATGGATGAAACT 58.131 29.630 0.00 0.00 43.62 2.66
3270 9766 7.673641 ATGGATGAAACTCAAGAGACTATCT 57.326 36.000 3.73 0.00 41.27 1.98
3271 9767 7.106439 TGGATGAAACTCAAGAGACTATCTC 57.894 40.000 3.73 0.00 43.70 2.75
3283 9779 5.633996 GAGACTATCTCTGCAAACAATCG 57.366 43.478 0.00 0.00 40.30 3.34
3295 9791 2.892425 CAATCGGACCGGCTGAGC 60.892 66.667 15.25 0.00 34.80 4.26
3409 9985 1.683385 GGTGAAGAAACCTGCTGCTTT 59.317 47.619 0.00 0.00 37.24 3.51
3410 9986 2.544486 GGTGAAGAAACCTGCTGCTTTG 60.544 50.000 0.00 0.00 37.24 2.77
3411 9987 2.358898 GTGAAGAAACCTGCTGCTTTGA 59.641 45.455 0.00 0.00 0.00 2.69
3463 10046 2.203294 GTCACAGGTGCCCGGTTT 60.203 61.111 0.00 0.00 27.46 3.27
3476 10059 2.419574 GCCCGGTTTGAGCTATCAACTA 60.420 50.000 0.00 0.00 45.07 2.24
3477 10060 3.195661 CCCGGTTTGAGCTATCAACTAC 58.804 50.000 0.00 0.00 45.07 2.73
3478 10061 3.118738 CCCGGTTTGAGCTATCAACTACT 60.119 47.826 0.00 0.00 45.07 2.57
3479 10062 4.113354 CCGGTTTGAGCTATCAACTACTC 58.887 47.826 0.00 0.00 45.07 2.59
3480 10063 4.113354 CGGTTTGAGCTATCAACTACTCC 58.887 47.826 0.00 0.00 45.07 3.85
3481 10064 4.443621 GGTTTGAGCTATCAACTACTCCC 58.556 47.826 0.00 0.00 45.07 4.30
3482 10065 4.162509 GGTTTGAGCTATCAACTACTCCCT 59.837 45.833 0.00 0.00 45.07 4.20
3483 10066 5.353111 GTTTGAGCTATCAACTACTCCCTC 58.647 45.833 0.00 0.00 45.07 4.30
3484 10067 3.567397 TGAGCTATCAACTACTCCCTCC 58.433 50.000 0.00 0.00 30.61 4.30
3485 10068 2.554893 GAGCTATCAACTACTCCCTCCG 59.445 54.545 0.00 0.00 0.00 4.63
3486 10069 2.091775 AGCTATCAACTACTCCCTCCGT 60.092 50.000 0.00 0.00 0.00 4.69
3487 10070 2.293955 GCTATCAACTACTCCCTCCGTC 59.706 54.545 0.00 0.00 0.00 4.79
3488 10071 1.777941 ATCAACTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3489 10072 0.679002 TCAACTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
3490 10073 0.679002 CAACTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
3491 10074 0.394080 AACTACTCCCTCCGTCCGAG 60.394 60.000 0.00 0.00 38.46 4.63
3492 10075 1.270414 ACTACTCCCTCCGTCCGAGA 61.270 60.000 0.00 0.00 41.63 4.04
3493 10076 0.107312 CTACTCCCTCCGTCCGAGAA 60.107 60.000 0.00 0.00 41.63 2.87
3494 10077 0.329261 TACTCCCTCCGTCCGAGAAA 59.671 55.000 0.00 0.00 41.63 2.52
3495 10078 0.541296 ACTCCCTCCGTCCGAGAAAA 60.541 55.000 0.00 0.00 41.63 2.29
3496 10079 0.108756 CTCCCTCCGTCCGAGAAAAC 60.109 60.000 0.00 0.00 41.63 2.43
3497 10080 0.541296 TCCCTCCGTCCGAGAAAACT 60.541 55.000 0.00 0.00 41.63 2.66
3498 10081 0.320697 CCCTCCGTCCGAGAAAACTT 59.679 55.000 0.00 0.00 41.63 2.66
3499 10082 1.429463 CCTCCGTCCGAGAAAACTTG 58.571 55.000 0.00 0.00 41.63 3.16
3500 10083 1.270147 CCTCCGTCCGAGAAAACTTGT 60.270 52.381 0.00 0.00 41.63 3.16
3501 10084 2.059541 CTCCGTCCGAGAAAACTTGTC 58.940 52.381 0.00 0.00 41.63 3.18
3502 10085 1.145803 CCGTCCGAGAAAACTTGTCC 58.854 55.000 0.00 0.00 0.00 4.02
3503 10086 1.145803 CGTCCGAGAAAACTTGTCCC 58.854 55.000 0.00 0.00 0.00 4.46
3504 10087 1.539496 CGTCCGAGAAAACTTGTCCCA 60.539 52.381 0.00 0.00 0.00 4.37
3505 10088 2.567985 GTCCGAGAAAACTTGTCCCAA 58.432 47.619 0.00 0.00 0.00 4.12
3506 10089 3.146847 GTCCGAGAAAACTTGTCCCAAT 58.853 45.455 0.00 0.00 0.00 3.16
3507 10090 3.188667 GTCCGAGAAAACTTGTCCCAATC 59.811 47.826 0.00 0.00 0.00 2.67
3508 10091 3.072476 TCCGAGAAAACTTGTCCCAATCT 59.928 43.478 0.00 0.00 0.00 2.40
3509 10092 3.821033 CCGAGAAAACTTGTCCCAATCTT 59.179 43.478 0.00 0.00 0.00 2.40
3510 10093 4.320494 CCGAGAAAACTTGTCCCAATCTTG 60.320 45.833 0.00 0.00 0.00 3.02
3511 10094 4.275936 CGAGAAAACTTGTCCCAATCTTGT 59.724 41.667 0.00 0.00 0.00 3.16
3512 10095 5.560953 CGAGAAAACTTGTCCCAATCTTGTC 60.561 44.000 0.00 0.00 0.00 3.18
3513 10096 5.200483 AGAAAACTTGTCCCAATCTTGTCA 58.800 37.500 0.00 0.00 0.00 3.58
3514 10097 5.835280 AGAAAACTTGTCCCAATCTTGTCAT 59.165 36.000 0.00 0.00 0.00 3.06
3515 10098 6.324770 AGAAAACTTGTCCCAATCTTGTCATT 59.675 34.615 0.00 0.00 0.00 2.57
3516 10099 5.712152 AACTTGTCCCAATCTTGTCATTC 57.288 39.130 0.00 0.00 0.00 2.67
3517 10100 4.728772 ACTTGTCCCAATCTTGTCATTCA 58.271 39.130 0.00 0.00 0.00 2.57
3518 10101 5.139727 ACTTGTCCCAATCTTGTCATTCAA 58.860 37.500 0.00 0.00 34.61 2.69
3519 10102 5.598005 ACTTGTCCCAATCTTGTCATTCAAA 59.402 36.000 0.00 0.00 35.48 2.69
3520 10103 6.268387 ACTTGTCCCAATCTTGTCATTCAAAT 59.732 34.615 0.00 0.00 35.48 2.32
3521 10104 6.028146 TGTCCCAATCTTGTCATTCAAATG 57.972 37.500 0.00 0.00 35.48 2.32
3522 10105 5.047164 TGTCCCAATCTTGTCATTCAAATGG 60.047 40.000 3.05 0.00 37.03 3.16
3523 10106 5.185635 GTCCCAATCTTGTCATTCAAATGGA 59.814 40.000 3.05 0.00 36.92 3.41
3524 10107 5.959594 TCCCAATCTTGTCATTCAAATGGAT 59.040 36.000 3.05 0.00 36.92 3.41
3525 10108 6.046593 CCCAATCTTGTCATTCAAATGGATG 58.953 40.000 3.05 0.00 36.92 3.51
3526 10109 6.351541 CCCAATCTTGTCATTCAAATGGATGT 60.352 38.462 1.75 0.00 36.92 3.06
3527 10110 7.147863 CCCAATCTTGTCATTCAAATGGATGTA 60.148 37.037 1.75 0.00 36.92 2.29
3528 10111 8.418662 CCAATCTTGTCATTCAAATGGATGTAT 58.581 33.333 1.75 0.00 36.92 2.29
3529 10112 9.459640 CAATCTTGTCATTCAAATGGATGTATC 57.540 33.333 1.75 0.00 37.03 2.24
3530 10113 8.991783 ATCTTGTCATTCAAATGGATGTATCT 57.008 30.769 1.75 0.00 37.03 1.98
3532 10115 9.551734 TCTTGTCATTCAAATGGATGTATCTAG 57.448 33.333 1.75 0.00 37.03 2.43
3533 10116 7.734924 TGTCATTCAAATGGATGTATCTAGC 57.265 36.000 1.75 0.00 37.03 3.42
3534 10117 7.281841 TGTCATTCAAATGGATGTATCTAGCA 58.718 34.615 1.75 0.00 37.03 3.49
3535 10118 7.227314 TGTCATTCAAATGGATGTATCTAGCAC 59.773 37.037 1.75 0.00 37.03 4.40
3536 10119 7.443575 GTCATTCAAATGGATGTATCTAGCACT 59.556 37.037 1.75 0.00 37.03 4.40
3537 10120 8.650490 TCATTCAAATGGATGTATCTAGCACTA 58.350 33.333 1.75 0.00 37.03 2.74
3538 10121 9.276590 CATTCAAATGGATGTATCTAGCACTAA 57.723 33.333 0.00 0.00 32.78 2.24
3539 10122 8.662781 TTCAAATGGATGTATCTAGCACTAAC 57.337 34.615 0.00 0.00 0.00 2.34
3540 10123 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
3541 10124 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
3542 10125 9.764363 CAAATGGATGTATCTAGCACTAACTTA 57.236 33.333 0.00 0.00 0.00 2.24
3543 10126 9.988815 AAATGGATGTATCTAGCACTAACTTAG 57.011 33.333 0.00 0.00 0.00 2.18
3544 10127 8.713708 ATGGATGTATCTAGCACTAACTTAGT 57.286 34.615 0.00 0.00 40.28 2.24
3563 10146 9.890629 AACTTAGTGCTAGATACATTCATTTGA 57.109 29.630 0.00 0.00 0.00 2.69
3564 10147 9.539825 ACTTAGTGCTAGATACATTCATTTGAG 57.460 33.333 0.00 0.00 0.00 3.02
3565 10148 8.893219 TTAGTGCTAGATACATTCATTTGAGG 57.107 34.615 0.00 0.00 0.00 3.86
3566 10149 6.294473 AGTGCTAGATACATTCATTTGAGGG 58.706 40.000 0.00 0.00 0.00 4.30
3567 10150 6.100279 AGTGCTAGATACATTCATTTGAGGGA 59.900 38.462 0.00 0.00 0.00 4.20
3568 10151 6.203723 GTGCTAGATACATTCATTTGAGGGAC 59.796 42.308 0.00 0.00 0.00 4.46
3569 10152 6.126796 TGCTAGATACATTCATTTGAGGGACA 60.127 38.462 0.00 0.00 0.00 4.02
3570 10153 6.939163 GCTAGATACATTCATTTGAGGGACAT 59.061 38.462 0.00 0.00 0.00 3.06
3571 10154 7.094890 GCTAGATACATTCATTTGAGGGACATG 60.095 40.741 0.00 0.00 0.00 3.21
3572 10155 6.666678 AGATACATTCATTTGAGGGACATGT 58.333 36.000 0.00 0.00 0.00 3.21
3573 10156 7.121382 AGATACATTCATTTGAGGGACATGTT 58.879 34.615 0.00 0.00 0.00 2.71
3574 10157 7.616935 AGATACATTCATTTGAGGGACATGTTT 59.383 33.333 0.00 0.00 0.00 2.83
3575 10158 6.423776 ACATTCATTTGAGGGACATGTTTT 57.576 33.333 0.00 0.00 0.00 2.43
3576 10159 6.829849 ACATTCATTTGAGGGACATGTTTTT 58.170 32.000 0.00 0.00 0.00 1.94
3591 10174 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
3592 10175 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
3602 10185 3.640029 GACGGAGGGAGTACATTATTCCA 59.360 47.826 0.00 0.00 36.38 3.53
3642 10233 4.539870 CTTGAAGCAGTGTGTGTAAATGG 58.460 43.478 0.00 0.00 0.00 3.16
3696 10287 4.100808 ACCAAAAGCTTCCAGCAAAATGTA 59.899 37.500 0.00 0.00 45.56 2.29
3736 10327 8.318412 TGAAAGGTCAAGCTAATTACATCACTA 58.682 33.333 0.00 0.00 0.00 2.74
3751 10342 2.352388 TCACTATAGCAAAACCGGCAC 58.648 47.619 0.00 0.00 0.00 5.01
3797 10388 0.685458 ATTCCCATTCACAGGGCAGC 60.685 55.000 0.00 0.00 46.36 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.962489 CTCCGCCCTGGTAGTCATAG 59.038 60.000 0.00 0.00 39.52 2.23
2 3 0.554305 TCTCCGCCCTGGTAGTCATA 59.446 55.000 0.00 0.00 39.52 2.15
3 4 0.105453 ATCTCCGCCCTGGTAGTCAT 60.105 55.000 0.00 0.00 39.52 3.06
6 7 2.435693 GCATCTCCGCCCTGGTAGT 61.436 63.158 0.00 0.00 39.52 2.73
7 8 2.136878 AGCATCTCCGCCCTGGTAG 61.137 63.158 0.00 0.00 39.52 3.18
8 9 2.041922 AGCATCTCCGCCCTGGTA 60.042 61.111 0.00 0.00 39.52 3.25
9 10 3.790437 CAGCATCTCCGCCCTGGT 61.790 66.667 0.00 0.00 39.52 4.00
10 11 3.790437 ACAGCATCTCCGCCCTGG 61.790 66.667 0.00 0.00 40.09 4.45
11 12 2.513204 CACAGCATCTCCGCCCTG 60.513 66.667 0.00 0.00 0.00 4.45
12 13 3.790437 CCACAGCATCTCCGCCCT 61.790 66.667 0.00 0.00 0.00 5.19
13 14 4.101448 ACCACAGCATCTCCGCCC 62.101 66.667 0.00 0.00 0.00 6.13
14 15 2.821366 CACCACAGCATCTCCGCC 60.821 66.667 0.00 0.00 0.00 6.13
15 16 2.821366 CCACCACAGCATCTCCGC 60.821 66.667 0.00 0.00 0.00 5.54
16 17 2.124983 CCCACCACAGCATCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
17 18 0.962356 CAACCCACCACAGCATCTCC 60.962 60.000 0.00 0.00 0.00 3.71
18 19 1.589716 GCAACCCACCACAGCATCTC 61.590 60.000 0.00 0.00 0.00 2.75
19 20 1.604593 GCAACCCACCACAGCATCT 60.605 57.895 0.00 0.00 0.00 2.90
20 21 1.462731 TTGCAACCCACCACAGCATC 61.463 55.000 0.00 0.00 34.87 3.91
21 22 0.832983 ATTGCAACCCACCACAGCAT 60.833 50.000 0.00 0.00 34.87 3.79
22 23 1.457267 ATTGCAACCCACCACAGCA 60.457 52.632 0.00 0.00 0.00 4.41
23 24 1.005867 CATTGCAACCCACCACAGC 60.006 57.895 0.00 0.00 0.00 4.40
24 25 1.114722 ACCATTGCAACCCACCACAG 61.115 55.000 0.00 0.00 0.00 3.66
25 26 1.075674 ACCATTGCAACCCACCACA 60.076 52.632 0.00 0.00 0.00 4.17
26 27 1.112315 TCACCATTGCAACCCACCAC 61.112 55.000 0.00 0.00 0.00 4.16
27 28 1.112315 GTCACCATTGCAACCCACCA 61.112 55.000 0.00 0.00 0.00 4.17
28 29 1.665442 GTCACCATTGCAACCCACC 59.335 57.895 0.00 0.00 0.00 4.61
29 30 1.169661 TCGTCACCATTGCAACCCAC 61.170 55.000 0.00 0.00 0.00 4.61
30 31 1.149401 TCGTCACCATTGCAACCCA 59.851 52.632 0.00 0.00 0.00 4.51
31 32 1.579429 GTCGTCACCATTGCAACCC 59.421 57.895 0.00 0.00 0.00 4.11
32 33 0.889186 AGGTCGTCACCATTGCAACC 60.889 55.000 0.00 0.00 46.68 3.77
33 34 0.517316 GAGGTCGTCACCATTGCAAC 59.483 55.000 0.00 0.00 46.68 4.17
34 35 0.396435 AGAGGTCGTCACCATTGCAA 59.604 50.000 0.00 0.00 46.68 4.08
35 36 0.037326 GAGAGGTCGTCACCATTGCA 60.037 55.000 0.00 0.00 46.68 4.08
36 37 1.078759 CGAGAGGTCGTCACCATTGC 61.079 60.000 0.00 0.00 46.68 3.56
37 38 3.036026 CGAGAGGTCGTCACCATTG 57.964 57.895 0.00 0.00 46.68 2.82
47 48 0.869454 CAGCGATCAAGCGAGAGGTC 60.869 60.000 0.00 0.00 43.76 3.85
49 50 1.591059 CCAGCGATCAAGCGAGAGG 60.591 63.158 0.00 0.00 43.00 3.69
50 51 0.179127 TTCCAGCGATCAAGCGAGAG 60.179 55.000 0.00 0.00 43.00 3.20
51 52 0.179127 CTTCCAGCGATCAAGCGAGA 60.179 55.000 0.00 0.00 43.00 4.04
52 53 1.760268 GCTTCCAGCGATCAAGCGAG 61.760 60.000 0.00 0.00 43.00 5.03
53 54 1.811266 GCTTCCAGCGATCAAGCGA 60.811 57.895 0.00 0.00 43.00 4.93
54 55 2.705826 GCTTCCAGCGATCAAGCG 59.294 61.111 0.00 0.00 43.00 4.68
71 72 4.944372 GTACCTCCGCCATCGCCG 62.944 72.222 0.00 0.00 0.00 6.46
72 73 4.944372 CGTACCTCCGCCATCGCC 62.944 72.222 0.00 0.00 0.00 5.54
73 74 3.825833 CTCGTACCTCCGCCATCGC 62.826 68.421 0.00 0.00 0.00 4.58
74 75 2.331805 CTCGTACCTCCGCCATCG 59.668 66.667 0.00 0.00 0.00 3.84
75 76 2.027751 GCTCGTACCTCCGCCATC 59.972 66.667 0.00 0.00 0.00 3.51
76 77 3.900892 CGCTCGTACCTCCGCCAT 61.901 66.667 0.00 0.00 0.00 4.40
85 86 3.766691 TTCAGGCCCCGCTCGTAC 61.767 66.667 0.00 0.00 0.00 3.67
86 87 3.766691 GTTCAGGCCCCGCTCGTA 61.767 66.667 0.00 0.00 0.00 3.43
92 93 2.825836 GATGCTGTTCAGGCCCCG 60.826 66.667 0.00 0.00 0.00 5.73
93 94 1.452833 GAGATGCTGTTCAGGCCCC 60.453 63.158 0.00 0.00 0.00 5.80
94 95 1.452833 GGAGATGCTGTTCAGGCCC 60.453 63.158 0.00 0.00 0.00 5.80
95 96 1.817099 CGGAGATGCTGTTCAGGCC 60.817 63.158 0.00 0.00 0.00 5.19
96 97 2.467826 GCGGAGATGCTGTTCAGGC 61.468 63.158 1.97 0.00 0.00 4.85
97 98 1.817099 GGCGGAGATGCTGTTCAGG 60.817 63.158 1.97 0.00 34.52 3.86
98 99 0.463295 ATGGCGGAGATGCTGTTCAG 60.463 55.000 0.00 0.00 34.52 3.02
99 100 0.745486 CATGGCGGAGATGCTGTTCA 60.745 55.000 0.00 0.00 34.52 3.18
100 101 0.462581 TCATGGCGGAGATGCTGTTC 60.463 55.000 0.00 0.00 34.52 3.18
101 102 0.745845 GTCATGGCGGAGATGCTGTT 60.746 55.000 0.00 0.00 34.52 3.16
102 103 1.153289 GTCATGGCGGAGATGCTGT 60.153 57.895 0.00 0.00 34.52 4.40
103 104 1.890979 GGTCATGGCGGAGATGCTG 60.891 63.158 0.00 0.00 34.52 4.41
104 105 2.037620 GAGGTCATGGCGGAGATGCT 62.038 60.000 0.00 0.00 34.52 3.79
105 106 1.596477 GAGGTCATGGCGGAGATGC 60.596 63.158 0.00 0.00 0.00 3.91
106 107 1.070445 GGAGGTCATGGCGGAGATG 59.930 63.158 0.00 0.00 0.00 2.90
107 108 1.074926 AGGAGGTCATGGCGGAGAT 60.075 57.895 0.00 0.00 0.00 2.75
108 109 1.758514 GAGGAGGTCATGGCGGAGA 60.759 63.158 0.00 0.00 0.00 3.71
109 110 2.801631 GGAGGAGGTCATGGCGGAG 61.802 68.421 0.00 0.00 0.00 4.63
110 111 2.764128 GGAGGAGGTCATGGCGGA 60.764 66.667 0.00 0.00 0.00 5.54
111 112 3.866582 GGGAGGAGGTCATGGCGG 61.867 72.222 0.00 0.00 0.00 6.13
112 113 3.866582 GGGGAGGAGGTCATGGCG 61.867 72.222 0.00 0.00 0.00 5.69
113 114 3.866582 CGGGGAGGAGGTCATGGC 61.867 72.222 0.00 0.00 0.00 4.40
114 115 2.365635 ACGGGGAGGAGGTCATGG 60.366 66.667 0.00 0.00 0.00 3.66
115 116 2.786495 CGACGGGGAGGAGGTCATG 61.786 68.421 0.00 0.00 0.00 3.07
116 117 2.442272 CGACGGGGAGGAGGTCAT 60.442 66.667 0.00 0.00 0.00 3.06
295 300 2.525248 CGCGCAGACACACACAACT 61.525 57.895 8.75 0.00 0.00 3.16
316 325 1.244816 CAACCGTTCCCCCTCTTTTC 58.755 55.000 0.00 0.00 0.00 2.29
321 330 2.047560 CGACAACCGTTCCCCCTC 60.048 66.667 0.00 0.00 0.00 4.30
332 342 0.944386 AACATCTGGTGTGCGACAAC 59.056 50.000 0.00 0.00 41.14 3.32
346 356 4.034048 CGCCTAGACATAACACCAAACATC 59.966 45.833 0.00 0.00 0.00 3.06
372 383 0.752658 AAGCTTGGTTCCTGCCAAAC 59.247 50.000 0.00 0.00 46.59 2.93
461 477 0.250901 GCCATGACACACCTCACCTT 60.251 55.000 0.00 0.00 0.00 3.50
468 484 2.977456 TGCACGCCATGACACACC 60.977 61.111 0.00 0.00 0.00 4.16
490 509 1.927174 CTCTCTCGTTGCCAAATACCG 59.073 52.381 0.00 0.00 0.00 4.02
509 528 8.774546 TCAGTCACTAATCCAGATATCTTTCT 57.225 34.615 1.33 0.00 0.00 2.52
517 536 6.798427 TTTAGCTCAGTCACTAATCCAGAT 57.202 37.500 0.00 0.00 0.00 2.90
518 537 6.407412 CCATTTAGCTCAGTCACTAATCCAGA 60.407 42.308 0.00 0.00 0.00 3.86
519 538 5.757320 CCATTTAGCTCAGTCACTAATCCAG 59.243 44.000 0.00 0.00 0.00 3.86
566 607 8.948631 TCCTATACATGTAAAGCAAGAGAAAG 57.051 34.615 10.14 0.00 0.00 2.62
572 613 6.000219 AGGCATCCTATACATGTAAAGCAAG 59.000 40.000 10.14 3.09 28.47 4.01
577 618 5.606749 AGACCAGGCATCCTATACATGTAAA 59.393 40.000 10.14 0.00 29.64 2.01
629 670 1.308069 TTCCGAACGGAGGGAGTACG 61.308 60.000 15.34 0.00 46.06 3.67
630 671 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
631 672 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
632 673 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
633 674 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
634 675 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
635 676 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
636 677 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
637 678 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
639 680 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
640 681 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
642 683 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
643 684 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
644 685 4.334443 CATTTCTGCGACAAGTAATTCCG 58.666 43.478 0.00 0.00 0.00 4.30
646 687 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
647 688 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
648 689 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
649 690 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
650 691 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
652 693 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
653 694 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
654 695 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
655 696 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
657 698 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
658 699 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
659 700 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
673 714 9.440773 TGTGTCTAGAACTAAAATACGTCTAGA 57.559 33.333 0.00 4.92 34.28 2.43
676 717 8.189460 GGATGTGTCTAGAACTAAAATACGTCT 58.811 37.037 0.00 0.00 0.00 4.18
677 718 7.972277 TGGATGTGTCTAGAACTAAAATACGTC 59.028 37.037 0.00 0.00 0.00 4.34
678 719 7.833786 TGGATGTGTCTAGAACTAAAATACGT 58.166 34.615 0.00 0.00 0.00 3.57
679 720 8.873215 ATGGATGTGTCTAGAACTAAAATACG 57.127 34.615 0.00 0.00 0.00 3.06
686 727 5.655090 TCGGAAATGGATGTGTCTAGAACTA 59.345 40.000 0.00 0.00 0.00 2.24
687 728 4.466370 TCGGAAATGGATGTGTCTAGAACT 59.534 41.667 0.00 0.00 0.00 3.01
688 729 4.755411 TCGGAAATGGATGTGTCTAGAAC 58.245 43.478 0.00 0.00 0.00 3.01
690 731 4.098044 GTCTCGGAAATGGATGTGTCTAGA 59.902 45.833 0.00 0.00 0.00 2.43
692 733 3.767131 TGTCTCGGAAATGGATGTGTCTA 59.233 43.478 0.00 0.00 0.00 2.59
693 734 2.567169 TGTCTCGGAAATGGATGTGTCT 59.433 45.455 0.00 0.00 0.00 3.41
694 735 2.972625 TGTCTCGGAAATGGATGTGTC 58.027 47.619 0.00 0.00 0.00 3.67
695 736 3.244561 ACTTGTCTCGGAAATGGATGTGT 60.245 43.478 0.00 0.00 0.00 3.72
696 737 3.338249 ACTTGTCTCGGAAATGGATGTG 58.662 45.455 0.00 0.00 0.00 3.21
697 738 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
698 739 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
699 740 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
700 741 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
701 742 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
703 744 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
704 745 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
707 748 3.555956 CCATTCGGAATTACTTGTCTCGG 59.444 47.826 0.00 0.00 0.00 4.63
708 749 4.430007 TCCATTCGGAATTACTTGTCTCG 58.570 43.478 0.00 0.00 38.83 4.04
709 750 4.811557 CCTCCATTCGGAATTACTTGTCTC 59.188 45.833 0.00 0.00 42.21 3.36
710 751 4.384208 CCCTCCATTCGGAATTACTTGTCT 60.384 45.833 0.00 0.00 42.21 3.41
711 752 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
712 753 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
713 754 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
714 755 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
715 756 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
716 757 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
717 758 4.553678 AGTACTCCCTCCATTCGGAATTA 58.446 43.478 0.00 0.00 42.21 1.40
718 759 3.385115 AGTACTCCCTCCATTCGGAATT 58.615 45.455 0.00 0.00 42.21 2.17
719 760 3.047695 AGTACTCCCTCCATTCGGAAT 57.952 47.619 0.00 0.00 42.21 3.01
720 761 2.544844 AGTACTCCCTCCATTCGGAA 57.455 50.000 0.00 0.00 42.21 4.30
721 762 2.158505 CCTAGTACTCCCTCCATTCGGA 60.159 54.545 0.00 0.00 39.79 4.55
722 763 2.240279 CCTAGTACTCCCTCCATTCGG 58.760 57.143 0.00 0.00 0.00 4.30
723 764 2.158505 TCCCTAGTACTCCCTCCATTCG 60.159 54.545 0.00 0.00 0.00 3.34
724 765 3.502356 CTCCCTAGTACTCCCTCCATTC 58.498 54.545 0.00 0.00 0.00 2.67
725 766 2.426561 GCTCCCTAGTACTCCCTCCATT 60.427 54.545 0.00 0.00 0.00 3.16
726 767 1.148236 GCTCCCTAGTACTCCCTCCAT 59.852 57.143 0.00 0.00 0.00 3.41
727 768 0.556747 GCTCCCTAGTACTCCCTCCA 59.443 60.000 0.00 0.00 0.00 3.86
728 769 0.854908 AGCTCCCTAGTACTCCCTCC 59.145 60.000 0.00 0.00 0.00 4.30
729 770 3.880168 TTAGCTCCCTAGTACTCCCTC 57.120 52.381 0.00 0.00 0.00 4.30
730 771 3.991621 AGATTAGCTCCCTAGTACTCCCT 59.008 47.826 0.00 0.00 0.00 4.20
731 772 4.391683 AGATTAGCTCCCTAGTACTCCC 57.608 50.000 0.00 0.00 0.00 4.30
732 773 4.021807 GCAAGATTAGCTCCCTAGTACTCC 60.022 50.000 0.00 0.00 0.00 3.85
733 774 4.830600 AGCAAGATTAGCTCCCTAGTACTC 59.169 45.833 0.00 0.00 38.01 2.59
742 783 2.541762 CGCTGTTAGCAAGATTAGCTCC 59.458 50.000 0.00 0.00 42.58 4.70
778 820 6.781138 TGTATTAAACAGGCTGCTTATTTCG 58.219 36.000 15.89 0.00 33.01 3.46
842 893 6.700960 TCAAACACCTTCTATGCAAAACATTG 59.299 34.615 0.00 0.00 40.38 2.82
856 907 4.782019 TGGCATAACATCAAACACCTTC 57.218 40.909 0.00 0.00 0.00 3.46
880 931 7.905604 TCGCATGGTATGATTAAAATCCTAG 57.094 36.000 0.00 0.00 34.50 3.02
886 937 6.751514 ACTGTTCGCATGGTATGATTAAAA 57.248 33.333 0.00 0.00 0.00 1.52
902 953 2.031683 AGCTCGGTTTTGAAACTGTTCG 59.968 45.455 13.47 6.13 43.92 3.95
906 957 3.691049 TTCAGCTCGGTTTTGAAACTG 57.309 42.857 8.75 8.75 44.68 3.16
907 958 3.882888 TCATTCAGCTCGGTTTTGAAACT 59.117 39.130 6.57 0.00 38.89 2.66
908 959 3.975035 GTCATTCAGCTCGGTTTTGAAAC 59.025 43.478 0.00 0.00 34.80 2.78
909 960 3.303725 CGTCATTCAGCTCGGTTTTGAAA 60.304 43.478 0.00 0.00 34.80 2.69
910 961 2.223144 CGTCATTCAGCTCGGTTTTGAA 59.777 45.455 0.00 0.00 35.52 2.69
972 1053 1.448119 GCCCTTTCCTTATCAGCGGC 61.448 60.000 0.00 0.00 0.00 6.53
1019 1100 4.499183 GAGATGAAGACAATTCGTGGACT 58.501 43.478 0.00 0.00 0.00 3.85
1025 1106 3.843868 GCATGCGAGATGAAGACAATTCG 60.844 47.826 0.00 0.00 38.23 3.34
1031 1112 4.091655 CAGATATGCATGCGAGATGAAGAC 59.908 45.833 14.09 0.00 0.00 3.01
1062 1147 9.435688 GAAGCCAAAACAACATAAATCCTAATT 57.564 29.630 0.00 0.00 0.00 1.40
1136 4921 3.066621 TGGTGAATGACTTGTTGCACTTC 59.933 43.478 0.00 0.00 0.00 3.01
1139 4924 2.859806 GCTGGTGAATGACTTGTTGCAC 60.860 50.000 0.00 0.00 0.00 4.57
1433 5241 3.689897 TTTTGTTGCAACACGAAAACG 57.310 38.095 31.17 0.00 38.92 3.60
1510 5318 6.237901 ACTGATAAAGCCAACAGTACATCAA 58.762 36.000 0.00 0.00 40.96 2.57
2065 7826 5.600696 TCAATTGAACTTGAAGGAAAAGGC 58.399 37.500 5.45 0.00 32.35 4.35
2072 7833 4.524316 TGGCATCAATTGAACTTGAAGG 57.476 40.909 13.09 0.00 38.55 3.46
2455 8254 3.447742 GTTTTCAAACAGCAGTGGGAAG 58.552 45.455 0.00 0.00 38.74 3.46
2627 8433 5.230942 CCACACAGAAAAGATCGTCTAACT 58.769 41.667 0.00 0.00 0.00 2.24
2628 8434 4.143094 GCCACACAGAAAAGATCGTCTAAC 60.143 45.833 0.00 0.00 0.00 2.34
2630 8436 3.006430 TGCCACACAGAAAAGATCGTCTA 59.994 43.478 0.00 0.00 0.00 2.59
2631 8437 2.224281 TGCCACACAGAAAAGATCGTCT 60.224 45.455 0.00 0.00 0.00 4.18
2632 8438 2.143122 TGCCACACAGAAAAGATCGTC 58.857 47.619 0.00 0.00 0.00 4.20
2633 8439 2.254546 TGCCACACAGAAAAGATCGT 57.745 45.000 0.00 0.00 0.00 3.73
2646 8452 0.902531 GCTAGGTAACCTCTGCCACA 59.097 55.000 0.00 0.00 34.61 4.17
3123 9607 7.736893 ACCGAGCTTAATTAGAAATGGATACT 58.263 34.615 0.00 0.00 37.61 2.12
3270 9766 0.953471 CCGGTCCGATTGTTTGCAGA 60.953 55.000 14.39 0.00 0.00 4.26
3271 9767 1.501741 CCGGTCCGATTGTTTGCAG 59.498 57.895 14.39 0.00 0.00 4.41
3283 9779 4.803426 CACTCGCTCAGCCGGTCC 62.803 72.222 1.90 0.00 0.00 4.46
3409 9985 2.195567 GCTTGGTGTTGCTGCCTCA 61.196 57.895 0.00 0.00 0.00 3.86
3410 9986 1.458639 AAGCTTGGTGTTGCTGCCTC 61.459 55.000 0.00 0.00 39.71 4.70
3411 9987 1.456331 AAGCTTGGTGTTGCTGCCT 60.456 52.632 0.00 0.00 39.71 4.75
3418 9997 2.576615 GACCTGAAGAAGCTTGGTGTT 58.423 47.619 2.10 0.00 0.00 3.32
3419 9998 1.541233 CGACCTGAAGAAGCTTGGTGT 60.541 52.381 2.10 0.00 0.00 4.16
3460 10043 5.346181 AGGGAGTAGTTGATAGCTCAAAC 57.654 43.478 0.00 0.00 42.85 2.93
3463 10046 3.567397 GGAGGGAGTAGTTGATAGCTCA 58.433 50.000 0.00 0.00 0.00 4.26
3476 10059 0.541296 TTTTCTCGGACGGAGGGAGT 60.541 55.000 9.88 0.00 43.34 3.85
3477 10060 0.108756 GTTTTCTCGGACGGAGGGAG 60.109 60.000 9.88 0.00 43.34 4.30
3478 10061 0.541296 AGTTTTCTCGGACGGAGGGA 60.541 55.000 9.88 0.00 43.34 4.20
3479 10062 0.320697 AAGTTTTCTCGGACGGAGGG 59.679 55.000 9.88 0.00 43.34 4.30
3480 10063 1.270147 ACAAGTTTTCTCGGACGGAGG 60.270 52.381 9.88 0.00 43.34 4.30
3481 10064 2.059541 GACAAGTTTTCTCGGACGGAG 58.940 52.381 3.68 3.68 44.58 4.63
3482 10065 1.269936 GGACAAGTTTTCTCGGACGGA 60.270 52.381 0.00 0.00 0.00 4.69
3483 10066 1.145803 GGACAAGTTTTCTCGGACGG 58.854 55.000 0.00 0.00 0.00 4.79
3484 10067 1.145803 GGGACAAGTTTTCTCGGACG 58.854 55.000 0.00 0.00 0.00 4.79
3485 10068 2.249844 TGGGACAAGTTTTCTCGGAC 57.750 50.000 0.00 0.00 31.92 4.79
3492 10075 7.364585 TTGAATGACAAGATTGGGACAAGTTTT 60.365 33.333 0.00 0.00 37.48 2.43
3493 10076 6.098124 TTGAATGACAAGATTGGGACAAGTTT 59.902 34.615 0.00 0.00 37.48 2.66
3494 10077 5.598005 TTGAATGACAAGATTGGGACAAGTT 59.402 36.000 0.00 0.00 37.48 2.66
3495 10078 5.139727 TTGAATGACAAGATTGGGACAAGT 58.860 37.500 0.00 0.00 37.48 3.16
3496 10079 5.710513 TTGAATGACAAGATTGGGACAAG 57.289 39.130 0.00 0.00 37.48 3.16
3497 10080 6.457355 CATTTGAATGACAAGATTGGGACAA 58.543 36.000 0.00 0.00 41.27 3.18
3498 10081 5.047164 CCATTTGAATGACAAGATTGGGACA 60.047 40.000 5.32 0.00 39.77 4.02
3499 10082 5.185635 TCCATTTGAATGACAAGATTGGGAC 59.814 40.000 5.32 0.00 39.77 4.46
3500 10083 5.331906 TCCATTTGAATGACAAGATTGGGA 58.668 37.500 5.32 0.00 39.77 4.37
3501 10084 5.664294 TCCATTTGAATGACAAGATTGGG 57.336 39.130 5.32 0.00 39.77 4.12
3502 10085 6.636705 ACATCCATTTGAATGACAAGATTGG 58.363 36.000 5.32 0.00 39.77 3.16
3503 10086 9.459640 GATACATCCATTTGAATGACAAGATTG 57.540 33.333 5.32 0.00 39.77 2.67
3504 10087 9.417561 AGATACATCCATTTGAATGACAAGATT 57.582 29.630 5.32 0.00 39.77 2.40
3505 10088 8.991783 AGATACATCCATTTGAATGACAAGAT 57.008 30.769 5.32 0.00 39.77 2.40
3506 10089 9.551734 CTAGATACATCCATTTGAATGACAAGA 57.448 33.333 5.32 0.00 39.77 3.02
3507 10090 8.288208 GCTAGATACATCCATTTGAATGACAAG 58.712 37.037 5.32 0.00 39.77 3.16
3508 10091 7.774625 TGCTAGATACATCCATTTGAATGACAA 59.225 33.333 5.32 0.00 38.70 3.18
3509 10092 7.227314 GTGCTAGATACATCCATTTGAATGACA 59.773 37.037 5.32 0.00 38.70 3.58
3510 10093 7.443575 AGTGCTAGATACATCCATTTGAATGAC 59.556 37.037 5.32 0.00 38.70 3.06
3511 10094 7.512130 AGTGCTAGATACATCCATTTGAATGA 58.488 34.615 5.32 0.00 38.70 2.57
3512 10095 7.741027 AGTGCTAGATACATCCATTTGAATG 57.259 36.000 0.00 0.00 36.17 2.67
3513 10096 9.277783 GTTAGTGCTAGATACATCCATTTGAAT 57.722 33.333 0.00 0.00 0.00 2.57
3514 10097 8.486210 AGTTAGTGCTAGATACATCCATTTGAA 58.514 33.333 0.00 0.00 0.00 2.69
3515 10098 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3516 10099 8.668510 AAGTTAGTGCTAGATACATCCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
3517 10100 9.988815 CTAAGTTAGTGCTAGATACATCCATTT 57.011 33.333 1.40 0.00 0.00 2.32
3518 10101 9.148879 ACTAAGTTAGTGCTAGATACATCCATT 57.851 33.333 14.82 0.00 37.69 3.16
3519 10102 8.713708 ACTAAGTTAGTGCTAGATACATCCAT 57.286 34.615 14.82 0.00 37.69 3.41
3537 10120 9.890629 TCAAATGAATGTATCTAGCACTAAGTT 57.109 29.630 0.00 0.00 0.00 2.66
3538 10121 9.539825 CTCAAATGAATGTATCTAGCACTAAGT 57.460 33.333 0.00 0.00 0.00 2.24
3539 10122 8.986847 CCTCAAATGAATGTATCTAGCACTAAG 58.013 37.037 0.00 0.00 0.00 2.18
3540 10123 7.933577 CCCTCAAATGAATGTATCTAGCACTAA 59.066 37.037 0.00 0.00 0.00 2.24
3541 10124 7.290014 TCCCTCAAATGAATGTATCTAGCACTA 59.710 37.037 0.00 0.00 0.00 2.74
3542 10125 6.100279 TCCCTCAAATGAATGTATCTAGCACT 59.900 38.462 0.00 0.00 0.00 4.40
3543 10126 6.203723 GTCCCTCAAATGAATGTATCTAGCAC 59.796 42.308 0.00 0.00 0.00 4.40
3544 10127 6.126796 TGTCCCTCAAATGAATGTATCTAGCA 60.127 38.462 0.00 0.00 0.00 3.49
3545 10128 6.291377 TGTCCCTCAAATGAATGTATCTAGC 58.709 40.000 0.00 0.00 0.00 3.42
3546 10129 7.935755 ACATGTCCCTCAAATGAATGTATCTAG 59.064 37.037 0.00 0.00 0.00 2.43
3547 10130 7.805163 ACATGTCCCTCAAATGAATGTATCTA 58.195 34.615 0.00 0.00 0.00 1.98
3548 10131 6.666678 ACATGTCCCTCAAATGAATGTATCT 58.333 36.000 0.00 0.00 0.00 1.98
3549 10132 6.949352 ACATGTCCCTCAAATGAATGTATC 57.051 37.500 0.00 0.00 0.00 2.24
3550 10133 7.722949 AAACATGTCCCTCAAATGAATGTAT 57.277 32.000 0.00 0.00 0.00 2.29
3551 10134 7.537596 AAAACATGTCCCTCAAATGAATGTA 57.462 32.000 0.00 0.00 0.00 2.29
3552 10135 6.423776 AAAACATGTCCCTCAAATGAATGT 57.576 33.333 0.00 0.00 0.00 2.71
3573 10156 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
3574 10157 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3575 10158 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
3576 10159 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
3577 10160 0.033796 AATGTACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
3578 10161 1.683943 TAATGTACTCCCTCCGTCCG 58.316 55.000 0.00 0.00 0.00 4.79
3579 10162 3.006644 GGAATAATGTACTCCCTCCGTCC 59.993 52.174 0.00 0.00 0.00 4.79
3580 10163 3.640029 TGGAATAATGTACTCCCTCCGTC 59.360 47.826 0.00 0.00 0.00 4.79
3581 10164 3.387050 GTGGAATAATGTACTCCCTCCGT 59.613 47.826 0.00 0.00 0.00 4.69
3582 10165 3.552273 CGTGGAATAATGTACTCCCTCCG 60.552 52.174 0.00 0.00 0.00 4.63
3583 10166 3.640029 TCGTGGAATAATGTACTCCCTCC 59.360 47.826 0.00 0.00 0.00 4.30
3584 10167 4.796618 GCTCGTGGAATAATGTACTCCCTC 60.797 50.000 0.00 0.00 0.00 4.30
3585 10168 3.069729 GCTCGTGGAATAATGTACTCCCT 59.930 47.826 0.00 0.00 0.00 4.20
3586 10169 3.181469 TGCTCGTGGAATAATGTACTCCC 60.181 47.826 0.00 0.00 0.00 4.30
3587 10170 4.051922 CTGCTCGTGGAATAATGTACTCC 58.948 47.826 0.00 0.00 0.00 3.85
3588 10171 4.933330 TCTGCTCGTGGAATAATGTACTC 58.067 43.478 0.00 0.00 0.00 2.59
3589 10172 4.402793 ACTCTGCTCGTGGAATAATGTACT 59.597 41.667 0.00 0.00 0.00 2.73
3590 10173 4.504461 CACTCTGCTCGTGGAATAATGTAC 59.496 45.833 0.00 0.00 0.00 2.90
3591 10174 4.401202 TCACTCTGCTCGTGGAATAATGTA 59.599 41.667 0.00 0.00 33.31 2.29
3592 10175 3.195610 TCACTCTGCTCGTGGAATAATGT 59.804 43.478 0.00 0.00 33.31 2.71
3642 10233 7.555195 TGATATGAATGGAGAATGGATATGCAC 59.445 37.037 0.00 0.00 0.00 4.57
3656 10247 8.980596 AGCTTTTGGTTTTATGATATGAATGGA 58.019 29.630 0.00 0.00 0.00 3.41
3696 10287 5.144100 TGACCTTTCATTTAACACCATGGT 58.856 37.500 13.00 13.00 0.00 3.55
3736 10327 2.696759 GGCGTGCCGGTTTTGCTAT 61.697 57.895 1.90 0.00 0.00 2.97
3751 10342 3.649277 CTCCTCCGACCTGTTGGCG 62.649 68.421 0.00 0.00 36.63 5.69
3797 10388 2.029110 GCAGCTTCTATCTCCTGCCTAG 60.029 54.545 0.00 0.00 43.58 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.