Multiple sequence alignment - TraesCS7B01G430100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G430100 chr7B 100.000 3194 0 0 1 3194 698870372 698873565 0.000000e+00 5899.0
1 TraesCS7B01G430100 chr7B 95.404 1262 47 4 739 1992 684930146 684931404 0.000000e+00 1999.0
2 TraesCS7B01G430100 chr7B 88.574 1059 68 19 2142 3194 684936886 684937897 0.000000e+00 1236.0
3 TraesCS7B01G430100 chr7B 96.011 702 25 1 1294 1992 684935963 684936664 0.000000e+00 1138.0
4 TraesCS7B01G430100 chr7B 79.176 1287 200 34 1008 2264 684969614 684970862 0.000000e+00 830.0
5 TraesCS7B01G430100 chr7B 78.045 1289 194 37 1008 2264 697804282 697803051 0.000000e+00 730.0
6 TraesCS7B01G430100 chr7B 77.173 1231 222 36 1043 2244 684954092 684952892 0.000000e+00 662.0
7 TraesCS7B01G430100 chr7B 79.801 906 136 20 1390 2264 694194598 694195487 1.630000e-172 616.0
8 TraesCS7B01G430100 chr7B 76.149 1262 247 33 1013 2251 694263171 694264401 5.860000e-172 614.0
9 TraesCS7B01G430100 chr7B 76.853 1093 189 40 1064 2117 695366316 695367383 2.780000e-155 558.0
10 TraesCS7B01G430100 chr7B 75.637 1256 232 51 1043 2260 92959540 92960759 1.000000e-154 556.0
11 TraesCS7B01G430100 chr7B 75.380 1316 233 46 1013 2272 697615793 697614513 4.660000e-153 551.0
12 TraesCS7B01G430100 chr7B 76.226 1060 207 33 990 2019 697545258 697546302 1.310000e-143 520.0
13 TraesCS7B01G430100 chr7B 77.850 614 111 14 1013 1605 685013245 685013854 1.090000e-94 357.0
14 TraesCS7B01G430100 chr7B 85.065 154 20 3 2657 2808 697404089 697404241 1.530000e-33 154.0
15 TraesCS7B01G430100 chr7B 79.000 200 26 13 2601 2788 92961910 92962105 4.330000e-24 122.0
16 TraesCS7B01G430100 chr7B 90.278 72 5 2 2653 2723 92961380 92961450 3.390000e-15 93.5
17 TraesCS7B01G430100 chrUn 95.345 1246 47 4 755 1992 421073337 421072095 0.000000e+00 1969.0
18 TraesCS7B01G430100 chrUn 94.471 1266 54 7 1294 2550 419113180 419114438 0.000000e+00 1936.0
19 TraesCS7B01G430100 chrUn 79.943 349 64 6 989 1334 77648511 77648166 5.290000e-63 252.0
20 TraesCS7B01G430100 chrUn 95.484 155 7 0 2552 2706 323235046 323235200 6.840000e-62 248.0
21 TraesCS7B01G430100 chr7A 89.607 789 47 18 2409 3194 700094806 700094050 0.000000e+00 970.0
22 TraesCS7B01G430100 chr7A 78.208 982 187 21 1005 1969 726417001 726417972 1.270000e-168 603.0
23 TraesCS7B01G430100 chr7A 74.455 1284 254 45 1004 2251 699935697 699936942 1.330000e-133 486.0
24 TraesCS7B01G430100 chr7A 93.355 301 18 2 2127 2426 700096664 700096365 8.130000e-121 444.0
25 TraesCS7B01G430100 chr7A 93.448 290 18 1 2137 2426 700096920 700097208 2.280000e-116 429.0
26 TraesCS7B01G430100 chr7A 76.681 699 141 13 1517 2197 700941170 700940476 5.030000e-98 368.0
27 TraesCS7B01G430100 chr7A 79.032 186 21 10 2549 2723 700090267 700090089 9.370000e-21 111.0
28 TraesCS7B01G430100 chr7A 91.667 72 4 2 2653 2723 130385332 130385402 7.290000e-17 99.0
29 TraesCS7B01G430100 chr1A 88.365 679 49 14 1 655 30879251 30879923 0.000000e+00 789.0
30 TraesCS7B01G430100 chr6A 87.805 656 52 11 1 655 149872930 149873558 0.000000e+00 743.0
31 TraesCS7B01G430100 chr7D 76.818 1100 214 32 1130 2202 609412548 609411463 5.940000e-162 580.0
32 TraesCS7B01G430100 chr7D 75.524 1336 238 59 1008 2272 600282126 600283443 9.940000e-160 573.0
33 TraesCS7B01G430100 chr7D 82.432 148 21 4 2653 2797 608101976 608101831 1.200000e-24 124.0
34 TraesCS7B01G430100 chr7D 75.338 296 36 21 2917 3194 609943953 609943677 1.210000e-19 108.0
35 TraesCS7B01G430100 chr7D 84.444 90 13 1 51 140 11266645 11266733 1.580000e-13 87.9
36 TraesCS7B01G430100 chr2B 80.745 161 26 5 15 172 572668265 572668423 1.560000e-23 121.0
37 TraesCS7B01G430100 chr5B 86.111 108 12 3 214 320 304127158 304127053 2.600000e-21 113.0
38 TraesCS7B01G430100 chr3B 82.203 118 10 6 205 320 448225956 448226064 1.220000e-14 91.6
39 TraesCS7B01G430100 chr3B 84.524 84 11 2 11 94 61906178 61906259 7.340000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G430100 chr7B 698870372 698873565 3193 False 5899.000000 5899 100.000000 1 3194 1 chr7B.!!$F9 3193
1 TraesCS7B01G430100 chr7B 684930146 684931404 1258 False 1999.000000 1999 95.404000 739 1992 1 chr7B.!!$F1 1253
2 TraesCS7B01G430100 chr7B 684935963 684937897 1934 False 1187.000000 1236 92.292500 1294 3194 2 chr7B.!!$F11 1900
3 TraesCS7B01G430100 chr7B 684969614 684970862 1248 False 830.000000 830 79.176000 1008 2264 1 chr7B.!!$F2 1256
4 TraesCS7B01G430100 chr7B 697803051 697804282 1231 True 730.000000 730 78.045000 1008 2264 1 chr7B.!!$R3 1256
5 TraesCS7B01G430100 chr7B 684952892 684954092 1200 True 662.000000 662 77.173000 1043 2244 1 chr7B.!!$R1 1201
6 TraesCS7B01G430100 chr7B 694194598 694195487 889 False 616.000000 616 79.801000 1390 2264 1 chr7B.!!$F4 874
7 TraesCS7B01G430100 chr7B 694263171 694264401 1230 False 614.000000 614 76.149000 1013 2251 1 chr7B.!!$F5 1238
8 TraesCS7B01G430100 chr7B 695366316 695367383 1067 False 558.000000 558 76.853000 1064 2117 1 chr7B.!!$F6 1053
9 TraesCS7B01G430100 chr7B 697614513 697615793 1280 True 551.000000 551 75.380000 1013 2272 1 chr7B.!!$R2 1259
10 TraesCS7B01G430100 chr7B 697545258 697546302 1044 False 520.000000 520 76.226000 990 2019 1 chr7B.!!$F8 1029
11 TraesCS7B01G430100 chr7B 685013245 685013854 609 False 357.000000 357 77.850000 1013 1605 1 chr7B.!!$F3 592
12 TraesCS7B01G430100 chr7B 92959540 92962105 2565 False 257.166667 556 81.638333 1043 2788 3 chr7B.!!$F10 1745
13 TraesCS7B01G430100 chrUn 421072095 421073337 1242 True 1969.000000 1969 95.345000 755 1992 1 chrUn.!!$R2 1237
14 TraesCS7B01G430100 chrUn 419113180 419114438 1258 False 1936.000000 1936 94.471000 1294 2550 1 chrUn.!!$F2 1256
15 TraesCS7B01G430100 chr7A 726417001 726417972 971 False 603.000000 603 78.208000 1005 1969 1 chr7A.!!$F4 964
16 TraesCS7B01G430100 chr7A 700090089 700096664 6575 True 508.333333 970 87.331333 2127 3194 3 chr7A.!!$R2 1067
17 TraesCS7B01G430100 chr7A 699935697 699936942 1245 False 486.000000 486 74.455000 1004 2251 1 chr7A.!!$F2 1247
18 TraesCS7B01G430100 chr7A 700940476 700941170 694 True 368.000000 368 76.681000 1517 2197 1 chr7A.!!$R1 680
19 TraesCS7B01G430100 chr1A 30879251 30879923 672 False 789.000000 789 88.365000 1 655 1 chr1A.!!$F1 654
20 TraesCS7B01G430100 chr6A 149872930 149873558 628 False 743.000000 743 87.805000 1 655 1 chr6A.!!$F1 654
21 TraesCS7B01G430100 chr7D 609411463 609412548 1085 True 580.000000 580 76.818000 1130 2202 1 chr7D.!!$R2 1072
22 TraesCS7B01G430100 chr7D 600282126 600283443 1317 False 573.000000 573 75.524000 1008 2272 1 chr7D.!!$F2 1264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 685 0.106167 ACAGATCGCTGCCCCTAGTA 60.106 55.0 0.0 0.0 46.26 1.82 F
669 694 0.327095 TGCCCCTAGTAGAATGCCCA 60.327 55.0 0.0 0.0 0.00 5.36 F
1831 1924 0.036388 ACGTGTAGCCATTGTGGAGG 60.036 55.0 0.0 0.0 40.96 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1905 0.036388 CCTCCACAATGGCTACACGT 60.036 55.0 0.00 0.00 37.47 4.49 R
1838 1931 0.178894 AAAAATCCCAGGCCTGCCTT 60.179 50.0 28.39 16.15 45.70 4.35 R
2999 7784 0.546122 ACACACAAGGACAGAGGCAA 59.454 50.0 0.00 0.00 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 5.221106 CGAATTTTGCTACATCCATCATGGT 60.221 40.000 2.79 0.00 39.03 3.55
109 110 3.127533 GCAGCGAGGCCGAATTGT 61.128 61.111 0.00 0.00 38.22 2.71
112 113 2.040544 AGCGAGGCCGAATTGTTGG 61.041 57.895 0.00 0.00 38.22 3.77
114 115 1.982073 GCGAGGCCGAATTGTTGGAG 61.982 60.000 0.00 0.00 38.22 3.86
123 124 2.277084 GAATTGTTGGAGCCGTCGTAT 58.723 47.619 0.00 0.00 0.00 3.06
124 125 1.651987 ATTGTTGGAGCCGTCGTATG 58.348 50.000 0.00 0.00 0.00 2.39
140 141 2.737783 CGTATGTTTTTGCTACCACCGA 59.262 45.455 0.00 0.00 0.00 4.69
183 184 6.327104 TCCATGAAGGGCATAATTTTTGCTAT 59.673 34.615 10.90 0.00 40.03 2.97
187 188 5.535753 AGGGCATAATTTTTGCTATGACC 57.464 39.130 10.90 5.92 46.02 4.02
207 208 6.176183 TGACCCATGATTTTGTTTTTGTTGT 58.824 32.000 0.00 0.00 0.00 3.32
209 210 6.850555 ACCCATGATTTTGTTTTTGTTGTTG 58.149 32.000 0.00 0.00 0.00 3.33
211 212 7.040132 ACCCATGATTTTGTTTTTGTTGTTGTT 60.040 29.630 0.00 0.00 0.00 2.83
212 213 7.272948 CCCATGATTTTGTTTTTGTTGTTGTTG 59.727 33.333 0.00 0.00 0.00 3.33
243 245 2.550606 GCAAATTGAGGACGTGGTACAA 59.449 45.455 0.00 0.00 44.16 2.41
245 247 3.478857 AATTGAGGACGTGGTACAACA 57.521 42.857 0.35 0.00 44.16 3.33
256 258 0.782384 GGTACAACACGAGCTTGACG 59.218 55.000 8.31 0.00 0.00 4.35
327 329 1.302832 CGGCCAAGGATCCTATGCC 60.303 63.158 31.29 31.29 38.62 4.40
538 563 0.179150 GAACAACGGTTGCTGCAACA 60.179 50.000 37.25 8.91 45.11 3.33
550 575 1.866601 GCTGCAACATTTGGTTTGGTC 59.133 47.619 0.00 0.00 37.72 4.02
558 583 0.536460 TTTGGTTTGGTCGAGCCTCC 60.536 55.000 12.85 11.84 38.35 4.30
622 647 2.494530 GCTTTGACCGGCCCAACAA 61.495 57.895 0.00 0.00 0.00 2.83
656 681 4.479993 GCACAGATCGCTGCCCCT 62.480 66.667 6.42 0.00 46.26 4.79
657 682 3.094062 GCACAGATCGCTGCCCCTA 62.094 63.158 6.42 0.00 46.26 3.53
658 683 1.068753 CACAGATCGCTGCCCCTAG 59.931 63.158 0.00 0.00 46.26 3.02
659 684 1.381872 ACAGATCGCTGCCCCTAGT 60.382 57.895 0.00 0.00 46.26 2.57
660 685 0.106167 ACAGATCGCTGCCCCTAGTA 60.106 55.000 0.00 0.00 46.26 1.82
662 687 0.478942 AGATCGCTGCCCCTAGTAGA 59.521 55.000 0.00 0.00 0.00 2.59
663 688 1.133450 AGATCGCTGCCCCTAGTAGAA 60.133 52.381 0.00 0.00 0.00 2.10
666 691 0.601311 CGCTGCCCCTAGTAGAATGC 60.601 60.000 0.00 0.00 0.00 3.56
668 693 0.398318 CTGCCCCTAGTAGAATGCCC 59.602 60.000 0.00 0.00 0.00 5.36
669 694 0.327095 TGCCCCTAGTAGAATGCCCA 60.327 55.000 0.00 0.00 0.00 5.36
670 695 1.068121 GCCCCTAGTAGAATGCCCAT 58.932 55.000 0.00 0.00 0.00 4.00
671 696 1.425448 GCCCCTAGTAGAATGCCCATT 59.575 52.381 0.00 0.00 0.00 3.16
672 697 2.158460 GCCCCTAGTAGAATGCCCATTT 60.158 50.000 0.00 0.00 0.00 2.32
673 698 3.490348 CCCCTAGTAGAATGCCCATTTG 58.510 50.000 0.00 0.00 0.00 2.32
674 699 3.117512 CCCCTAGTAGAATGCCCATTTGT 60.118 47.826 0.00 0.00 0.00 2.83
675 700 4.104102 CCCCTAGTAGAATGCCCATTTGTA 59.896 45.833 0.00 0.00 0.00 2.41
676 701 5.222130 CCCCTAGTAGAATGCCCATTTGTAT 60.222 44.000 0.00 0.00 0.00 2.29
677 702 6.306987 CCCTAGTAGAATGCCCATTTGTATT 58.693 40.000 0.00 0.00 0.00 1.89
679 704 6.772716 CCTAGTAGAATGCCCATTTGTATTGT 59.227 38.462 0.00 0.00 0.00 2.71
683 708 9.200817 AGTAGAATGCCCATTTGTATTGTAAAT 57.799 29.630 0.00 0.00 0.00 1.40
686 711 9.985730 AGAATGCCCATTTGTATTGTAAATATG 57.014 29.630 0.00 0.00 0.00 1.78
687 712 8.606040 AATGCCCATTTGTATTGTAAATATGC 57.394 30.769 0.00 0.00 0.00 3.14
688 713 7.117285 TGCCCATTTGTATTGTAAATATGCA 57.883 32.000 0.00 0.00 34.07 3.96
689 714 7.733969 TGCCCATTTGTATTGTAAATATGCAT 58.266 30.769 3.79 3.79 32.78 3.96
690 715 8.209584 TGCCCATTTGTATTGTAAATATGCATT 58.790 29.630 3.54 0.00 32.78 3.56
691 716 9.054922 GCCCATTTGTATTGTAAATATGCATTT 57.945 29.630 3.54 0.00 38.02 2.32
721 746 9.486123 AGGATATGTCAATATGCATCTAGTAGT 57.514 33.333 0.19 0.00 39.04 2.73
729 754 7.881751 TCAATATGCATCTAGTAGTAGTACCGT 59.118 37.037 0.19 0.00 0.00 4.83
730 755 9.159364 CAATATGCATCTAGTAGTAGTACCGTA 57.841 37.037 0.19 1.49 0.00 4.02
731 756 9.730705 AATATGCATCTAGTAGTAGTACCGTAA 57.269 33.333 0.19 0.00 0.00 3.18
732 757 9.730705 ATATGCATCTAGTAGTAGTACCGTAAA 57.269 33.333 0.19 0.00 0.00 2.01
733 758 8.632906 ATGCATCTAGTAGTAGTACCGTAAAT 57.367 34.615 4.02 0.00 0.00 1.40
734 759 8.455903 TGCATCTAGTAGTAGTACCGTAAATT 57.544 34.615 4.02 0.00 0.00 1.82
735 760 8.906867 TGCATCTAGTAGTAGTACCGTAAATTT 58.093 33.333 4.02 0.00 0.00 1.82
736 761 9.741647 GCATCTAGTAGTAGTACCGTAAATTTT 57.258 33.333 4.02 0.00 0.00 1.82
838 864 8.526681 CATTTTTAGAAATAATCTGAACGCAGC 58.473 33.333 0.00 0.00 39.30 5.25
910 940 4.681643 CGTGCGTGCGCCACAAAT 62.682 61.111 14.16 0.00 41.09 2.32
1205 1238 3.057337 CGACCACTTCTTCCCGGT 58.943 61.111 0.00 0.00 0.00 5.28
1272 1306 1.226435 CGCCGACTTCTCCTTCTCG 60.226 63.158 0.00 0.00 0.00 4.04
1531 1621 2.266554 CGGAAGAGACAGCATTCAGAC 58.733 52.381 0.00 0.00 0.00 3.51
1641 1734 1.843851 ACTGGTTTGGTCCTTGACAGA 59.156 47.619 9.99 0.00 33.68 3.41
1801 1894 3.077556 CCGACCTCCCACCCAGAG 61.078 72.222 0.00 0.00 0.00 3.35
1803 1896 2.055042 CGACCTCCCACCCAGAGAG 61.055 68.421 0.00 0.00 32.86 3.20
1805 1898 1.229336 ACCTCCCACCCAGAGAGTG 60.229 63.158 0.00 0.00 32.86 3.51
1818 1911 4.761235 CAGAGAGTGGAGTAAACGTGTA 57.239 45.455 0.00 0.00 0.00 2.90
1819 1912 4.724303 CAGAGAGTGGAGTAAACGTGTAG 58.276 47.826 0.00 0.00 0.00 2.74
1820 1913 3.190953 AGAGAGTGGAGTAAACGTGTAGC 59.809 47.826 0.00 0.00 0.00 3.58
1821 1914 2.230750 AGAGTGGAGTAAACGTGTAGCC 59.769 50.000 0.00 0.00 0.00 3.93
1822 1915 1.965643 AGTGGAGTAAACGTGTAGCCA 59.034 47.619 3.67 3.67 0.00 4.75
1825 1918 3.124636 GTGGAGTAAACGTGTAGCCATTG 59.875 47.826 9.78 0.00 0.00 2.82
1826 1919 3.244284 TGGAGTAAACGTGTAGCCATTGT 60.244 43.478 3.67 0.00 0.00 2.71
1827 1920 3.124636 GGAGTAAACGTGTAGCCATTGTG 59.875 47.826 0.00 0.00 0.00 3.33
1828 1921 3.071479 AGTAAACGTGTAGCCATTGTGG 58.929 45.455 0.00 0.00 41.55 4.17
1830 1923 1.808411 AACGTGTAGCCATTGTGGAG 58.192 50.000 0.00 0.00 40.96 3.86
1831 1924 0.036388 ACGTGTAGCCATTGTGGAGG 60.036 55.000 0.00 0.00 40.96 4.30
1838 1931 2.615465 CCATTGTGGAGGCAGGGGA 61.615 63.158 0.00 0.00 40.96 4.81
1839 1932 1.383799 CATTGTGGAGGCAGGGGAA 59.616 57.895 0.00 0.00 0.00 3.97
1840 1933 0.682209 CATTGTGGAGGCAGGGGAAG 60.682 60.000 0.00 0.00 0.00 3.46
1856 1949 3.194417 AGGCAGGCCTGGGATTTT 58.806 55.556 33.46 0.00 46.22 1.82
1857 1950 1.471081 AGGCAGGCCTGGGATTTTT 59.529 52.632 33.46 0.00 46.22 1.94
1858 1951 0.906282 AGGCAGGCCTGGGATTTTTG 60.906 55.000 33.46 6.68 46.22 2.44
1859 1952 1.598517 GCAGGCCTGGGATTTTTGG 59.401 57.895 33.46 4.85 0.00 3.28
1860 1953 1.902765 GCAGGCCTGGGATTTTTGGG 61.903 60.000 33.46 4.28 0.00 4.12
1862 1955 0.193321 AGGCCTGGGATTTTTGGGTT 59.807 50.000 3.11 0.00 0.00 4.11
1863 1956 0.613260 GGCCTGGGATTTTTGGGTTC 59.387 55.000 0.00 0.00 0.00 3.62
1864 1957 0.613260 GCCTGGGATTTTTGGGTTCC 59.387 55.000 0.00 0.00 0.00 3.62
1866 1959 2.550175 CCTGGGATTTTTGGGTTCCAT 58.450 47.619 0.00 0.00 31.53 3.41
1867 1960 2.236893 CCTGGGATTTTTGGGTTCCATG 59.763 50.000 0.00 0.00 31.53 3.66
1869 1962 2.265367 GGGATTTTTGGGTTCCATGGT 58.735 47.619 12.58 0.00 31.53 3.55
1870 1963 2.027285 GGGATTTTTGGGTTCCATGGTG 60.027 50.000 12.58 0.00 31.53 4.17
1871 1964 2.903135 GGATTTTTGGGTTCCATGGTGA 59.097 45.455 12.58 0.00 31.53 4.02
1873 1966 4.202409 GGATTTTTGGGTTCCATGGTGAAA 60.202 41.667 12.58 0.00 31.53 2.69
1874 1967 5.514659 GGATTTTTGGGTTCCATGGTGAAAT 60.515 40.000 12.58 8.57 31.53 2.17
1875 1968 5.379706 TTTTTGGGTTCCATGGTGAAATT 57.620 34.783 12.58 0.00 31.53 1.82
1877 1970 1.622811 TGGGTTCCATGGTGAAATTGC 59.377 47.619 12.58 0.00 0.00 3.56
1880 1973 3.524541 GGTTCCATGGTGAAATTGCATC 58.475 45.455 12.58 0.00 0.00 3.91
1882 1975 4.178540 GTTCCATGGTGAAATTGCATCTG 58.821 43.478 12.58 0.00 0.00 2.90
1883 1976 3.699413 TCCATGGTGAAATTGCATCTGA 58.301 40.909 12.58 0.00 0.00 3.27
1886 1979 4.341235 CCATGGTGAAATTGCATCTGATCT 59.659 41.667 2.57 0.00 0.00 2.75
1887 1980 5.507482 CCATGGTGAAATTGCATCTGATCTC 60.507 44.000 2.57 0.00 0.00 2.75
1888 1981 4.591929 TGGTGAAATTGCATCTGATCTCA 58.408 39.130 0.00 0.00 0.00 3.27
1889 1982 4.638865 TGGTGAAATTGCATCTGATCTCAG 59.361 41.667 0.00 0.56 45.08 3.35
1890 1983 4.497674 GGTGAAATTGCATCTGATCTCAGC 60.498 45.833 2.21 0.00 43.46 4.26
1891 1984 4.335874 GTGAAATTGCATCTGATCTCAGCT 59.664 41.667 2.21 0.00 43.46 4.24
1892 1985 5.526479 GTGAAATTGCATCTGATCTCAGCTA 59.474 40.000 2.21 0.00 43.46 3.32
1893 1986 6.205076 GTGAAATTGCATCTGATCTCAGCTAT 59.795 38.462 2.21 0.00 43.46 2.97
1894 1987 6.204882 TGAAATTGCATCTGATCTCAGCTATG 59.795 38.462 2.21 3.90 43.46 2.23
1895 1988 3.041508 TGCATCTGATCTCAGCTATGC 57.958 47.619 19.38 19.38 46.15 3.14
1896 1989 2.289506 TGCATCTGATCTCAGCTATGCC 60.290 50.000 21.61 10.95 45.75 4.40
1897 1990 2.289506 GCATCTGATCTCAGCTATGCCA 60.290 50.000 17.02 0.00 43.07 4.92
1898 1991 3.620226 GCATCTGATCTCAGCTATGCCAT 60.620 47.826 17.02 0.00 43.07 4.40
1899 1992 4.580868 CATCTGATCTCAGCTATGCCATT 58.419 43.478 2.21 0.00 43.46 3.16
1900 1993 4.004196 TCTGATCTCAGCTATGCCATTG 57.996 45.455 2.21 0.00 43.46 2.82
1901 1994 2.484651 CTGATCTCAGCTATGCCATTGC 59.515 50.000 2.74 2.74 37.15 3.56
1902 1995 4.055214 CTGATCTCAGCTATGCCATTGCA 61.055 47.826 13.41 0.00 44.05 4.08
1903 1996 6.092890 CTGATCTCAGCTATGCCATTGCAC 62.093 50.000 13.41 0.00 43.28 4.57
1912 2005 2.512485 TGCCATTGCACAAAAGACAG 57.488 45.000 0.00 0.00 44.23 3.51
1913 2006 1.068895 TGCCATTGCACAAAAGACAGG 59.931 47.619 0.00 0.00 44.23 4.00
1914 2007 1.787012 CCATTGCACAAAAGACAGGC 58.213 50.000 0.00 0.00 0.00 4.85
1915 2008 1.411394 CATTGCACAAAAGACAGGCG 58.589 50.000 0.00 0.00 0.00 5.52
1916 2009 1.001487 CATTGCACAAAAGACAGGCGA 60.001 47.619 0.00 0.00 0.00 5.54
1917 2010 0.662619 TTGCACAAAAGACAGGCGAG 59.337 50.000 0.00 0.00 0.00 5.03
1918 2011 0.179059 TGCACAAAAGACAGGCGAGA 60.179 50.000 0.00 0.00 0.00 4.04
1919 2012 0.514691 GCACAAAAGACAGGCGAGAG 59.485 55.000 0.00 0.00 0.00 3.20
1921 2014 1.795286 CACAAAAGACAGGCGAGAGTC 59.205 52.381 0.00 0.00 35.02 3.36
1922 2015 1.270358 ACAAAAGACAGGCGAGAGTCC 60.270 52.381 0.00 0.00 35.23 3.85
1925 2018 1.309499 AAGACAGGCGAGAGTCCGAG 61.309 60.000 5.36 0.00 35.23 4.63
1930 2023 3.444805 GCGAGAGTCCGAGCCAGT 61.445 66.667 5.36 0.00 0.00 4.00
1931 2024 2.487428 CGAGAGTCCGAGCCAGTG 59.513 66.667 0.00 0.00 0.00 3.66
1932 2025 2.888863 GAGAGTCCGAGCCAGTGG 59.111 66.667 4.20 4.20 0.00 4.00
1946 2039 3.017265 CCAGTGGCAAATGTTGAAGAC 57.983 47.619 0.00 0.00 0.00 3.01
1947 2040 2.361757 CCAGTGGCAAATGTTGAAGACA 59.638 45.455 0.00 0.00 43.71 3.41
1948 2041 3.181477 CCAGTGGCAAATGTTGAAGACAA 60.181 43.478 0.00 0.00 42.62 3.18
1949 2042 4.501915 CCAGTGGCAAATGTTGAAGACAAT 60.502 41.667 0.00 0.00 42.62 2.71
1951 2044 4.586001 AGTGGCAAATGTTGAAGACAATCT 59.414 37.500 0.00 0.00 42.62 2.40
1952 2045 4.919754 GTGGCAAATGTTGAAGACAATCTC 59.080 41.667 0.00 0.00 42.62 2.75
1954 2047 4.919754 GGCAAATGTTGAAGACAATCTCAC 59.080 41.667 0.00 0.00 42.62 3.51
1955 2048 5.278660 GGCAAATGTTGAAGACAATCTCACT 60.279 40.000 0.00 0.00 42.62 3.41
1956 2049 6.072508 GGCAAATGTTGAAGACAATCTCACTA 60.073 38.462 0.00 0.00 42.62 2.74
1957 2050 7.020010 GCAAATGTTGAAGACAATCTCACTAG 58.980 38.462 0.00 0.00 42.62 2.57
1960 2053 5.784177 TGTTGAAGACAATCTCACTAGACC 58.216 41.667 0.00 0.00 38.32 3.85
1961 2054 5.172205 GTTGAAGACAATCTCACTAGACCC 58.828 45.833 0.00 0.00 38.32 4.46
1962 2055 4.678256 TGAAGACAATCTCACTAGACCCT 58.322 43.478 0.00 0.00 33.57 4.34
1963 2056 4.464244 TGAAGACAATCTCACTAGACCCTG 59.536 45.833 0.00 0.00 33.57 4.45
1964 2057 3.370104 AGACAATCTCACTAGACCCTGG 58.630 50.000 0.00 0.00 33.57 4.45
1965 2058 3.011821 AGACAATCTCACTAGACCCTGGA 59.988 47.826 0.00 0.00 33.57 3.86
1967 2060 5.103473 AGACAATCTCACTAGACCCTGGATA 60.103 44.000 0.00 0.00 33.57 2.59
1969 2062 4.816048 ATCTCACTAGACCCTGGATACA 57.184 45.455 0.00 0.00 38.60 2.29
1970 2063 5.346782 ATCTCACTAGACCCTGGATACAT 57.653 43.478 0.00 0.00 39.82 2.29
1971 2064 6.470456 ATCTCACTAGACCCTGGATACATA 57.530 41.667 0.00 0.00 39.82 2.29
1972 2065 7.050493 ATCTCACTAGACCCTGGATACATAT 57.950 40.000 0.00 0.00 39.82 1.78
1973 2066 8.176216 ATCTCACTAGACCCTGGATACATATA 57.824 38.462 0.00 0.00 39.82 0.86
1993 2086 3.976793 ATTCTATTGATGCTGCAACCG 57.023 42.857 6.36 0.00 0.00 4.44
1994 2087 1.667236 TCTATTGATGCTGCAACCGG 58.333 50.000 6.36 0.00 0.00 5.28
1995 2088 1.209261 TCTATTGATGCTGCAACCGGA 59.791 47.619 9.46 0.00 0.00 5.14
1996 2089 2.016318 CTATTGATGCTGCAACCGGAA 58.984 47.619 9.46 0.00 0.00 4.30
1997 2090 0.813184 ATTGATGCTGCAACCGGAAG 59.187 50.000 9.46 0.00 0.00 3.46
2014 2107 3.754323 CGGAAGGTATTTGCTGTTGGTTA 59.246 43.478 0.00 0.00 0.00 2.85
2015 2108 4.142687 CGGAAGGTATTTGCTGTTGGTTAG 60.143 45.833 0.00 0.00 0.00 2.34
2018 2111 4.332828 AGGTATTTGCTGTTGGTTAGGAC 58.667 43.478 0.00 0.00 0.00 3.85
2019 2112 3.126343 GGTATTTGCTGTTGGTTAGGACG 59.874 47.826 0.00 0.00 0.00 4.79
2020 2113 1.600023 TTTGCTGTTGGTTAGGACGG 58.400 50.000 0.00 0.00 0.00 4.79
2022 2115 2.388232 GCTGTTGGTTAGGACGGCG 61.388 63.158 4.80 4.80 38.28 6.46
2023 2116 1.740296 CTGTTGGTTAGGACGGCGG 60.740 63.158 13.24 0.00 0.00 6.13
2024 2117 3.122971 GTTGGTTAGGACGGCGGC 61.123 66.667 13.24 8.60 0.00 6.53
2025 2118 4.397832 TTGGTTAGGACGGCGGCC 62.398 66.667 28.04 28.04 0.00 6.13
2027 2120 4.525949 GGTTAGGACGGCGGCCTC 62.526 72.222 41.80 25.77 36.96 4.70
2028 2121 3.459063 GTTAGGACGGCGGCCTCT 61.459 66.667 41.80 19.98 36.96 3.69
2029 2122 2.682494 TTAGGACGGCGGCCTCTT 60.682 61.111 41.80 19.07 36.96 2.85
2030 2123 2.718073 TTAGGACGGCGGCCTCTTC 61.718 63.158 41.80 11.58 36.96 2.87
2031 2124 3.657038 TAGGACGGCGGCCTCTTCT 62.657 63.158 41.80 18.14 36.96 2.85
2032 2125 4.821589 GGACGGCGGCCTCTTCTG 62.822 72.222 27.98 2.34 0.00 3.02
2033 2126 4.070552 GACGGCGGCCTCTTCTGT 62.071 66.667 18.34 6.03 0.00 3.41
2035 2128 2.105128 CGGCGGCCTCTTCTGTAG 59.895 66.667 18.34 0.00 0.00 2.74
2036 2129 2.415608 CGGCGGCCTCTTCTGTAGA 61.416 63.158 18.34 0.00 0.00 2.59
2037 2130 1.142097 GGCGGCCTCTTCTGTAGAC 59.858 63.158 12.87 0.00 0.00 2.59
2038 2131 1.605058 GGCGGCCTCTTCTGTAGACA 61.605 60.000 12.87 0.00 0.00 3.41
2039 2132 0.246635 GCGGCCTCTTCTGTAGACAA 59.753 55.000 0.00 0.00 0.00 3.18
2041 2134 2.678190 GCGGCCTCTTCTGTAGACAATT 60.678 50.000 0.00 0.00 0.00 2.32
2042 2135 3.600388 CGGCCTCTTCTGTAGACAATTT 58.400 45.455 0.00 0.00 0.00 1.82
2044 2137 3.691609 GGCCTCTTCTGTAGACAATTTGG 59.308 47.826 0.00 0.00 0.00 3.28
2046 2139 5.488341 GCCTCTTCTGTAGACAATTTGGTA 58.512 41.667 0.78 0.00 0.00 3.25
2047 2140 5.582665 GCCTCTTCTGTAGACAATTTGGTAG 59.417 44.000 0.78 0.00 0.00 3.18
2048 2141 6.574465 GCCTCTTCTGTAGACAATTTGGTAGA 60.574 42.308 0.78 0.00 0.00 2.59
2049 2142 7.038659 CCTCTTCTGTAGACAATTTGGTAGAG 58.961 42.308 0.78 0.00 0.00 2.43
2050 2143 7.093727 CCTCTTCTGTAGACAATTTGGTAGAGA 60.094 40.741 0.78 3.17 0.00 3.10
2052 2145 8.816894 TCTTCTGTAGACAATTTGGTAGAGAAT 58.183 33.333 15.20 0.00 27.83 2.40
2054 2147 9.436957 TTCTGTAGACAATTTGGTAGAGAATTC 57.563 33.333 12.69 0.00 0.00 2.17
2056 2149 8.547967 TGTAGACAATTTGGTAGAGAATTCAC 57.452 34.615 8.44 0.74 0.00 3.18
2057 2150 8.375506 TGTAGACAATTTGGTAGAGAATTCACT 58.624 33.333 10.36 10.36 0.00 3.41
2059 2152 6.591834 AGACAATTTGGTAGAGAATTCACTCG 59.408 38.462 8.79 0.00 41.25 4.18
2061 2154 6.369065 ACAATTTGGTAGAGAATTCACTCGTC 59.631 38.462 8.79 0.00 41.25 4.20
2063 2156 3.340928 TGGTAGAGAATTCACTCGTCGA 58.659 45.455 8.79 0.00 41.25 4.20
2065 2158 4.398358 TGGTAGAGAATTCACTCGTCGAAT 59.602 41.667 8.79 0.00 41.25 3.34
2066 2159 5.587443 TGGTAGAGAATTCACTCGTCGAATA 59.413 40.000 8.79 0.00 41.25 1.75
2071 2164 7.484975 AGAGAATTCACTCGTCGAATATTTCT 58.515 34.615 8.44 2.03 41.25 2.52
2072 2165 7.646130 AGAGAATTCACTCGTCGAATATTTCTC 59.354 37.037 17.86 17.86 41.25 2.87
2073 2166 7.258441 AGAATTCACTCGTCGAATATTTCTCA 58.742 34.615 8.44 0.00 32.79 3.27
2074 2167 7.759886 AGAATTCACTCGTCGAATATTTCTCAA 59.240 33.333 8.44 0.00 32.79 3.02
2075 2168 8.425577 AATTCACTCGTCGAATATTTCTCAAT 57.574 30.769 0.00 0.00 32.79 2.57
2076 2169 6.812481 TCACTCGTCGAATATTTCTCAATG 57.188 37.500 0.00 0.00 0.00 2.82
2077 2170 5.748630 TCACTCGTCGAATATTTCTCAATGG 59.251 40.000 0.00 0.00 0.00 3.16
2078 2171 5.748630 CACTCGTCGAATATTTCTCAATGGA 59.251 40.000 0.00 0.00 0.00 3.41
2079 2172 5.749109 ACTCGTCGAATATTTCTCAATGGAC 59.251 40.000 0.00 0.00 0.00 4.02
2080 2173 4.738252 TCGTCGAATATTTCTCAATGGACG 59.262 41.667 0.00 3.61 44.16 4.79
2081 2174 4.606232 CGTCGAATATTTCTCAATGGACGC 60.606 45.833 0.00 0.00 38.33 5.19
2082 2175 3.807622 TCGAATATTTCTCAATGGACGCC 59.192 43.478 0.00 0.00 0.00 5.68
2084 2177 4.035091 CGAATATTTCTCAATGGACGCCAA 59.965 41.667 2.68 0.00 36.95 4.52
2085 2178 5.505173 AATATTTCTCAATGGACGCCAAG 57.495 39.130 2.68 0.12 36.95 3.61
2087 2180 2.787473 TTCTCAATGGACGCCAAGAT 57.213 45.000 2.68 0.00 36.95 2.40
2088 2181 2.028420 TCTCAATGGACGCCAAGATG 57.972 50.000 2.68 3.77 36.95 2.90
2089 2182 1.278985 TCTCAATGGACGCCAAGATGT 59.721 47.619 2.68 0.00 36.95 3.06
2090 2183 2.086869 CTCAATGGACGCCAAGATGTT 58.913 47.619 2.68 0.00 36.95 2.71
2091 2184 1.811965 TCAATGGACGCCAAGATGTTG 59.188 47.619 2.68 0.00 36.95 3.33
2092 2185 0.527565 AATGGACGCCAAGATGTTGC 59.472 50.000 2.68 0.00 36.95 4.17
2093 2186 0.608856 ATGGACGCCAAGATGTTGCA 60.609 50.000 2.68 0.00 36.95 4.08
2094 2187 1.236616 TGGACGCCAAGATGTTGCAG 61.237 55.000 0.00 0.00 31.64 4.41
2095 2188 1.154150 GACGCCAAGATGTTGCAGC 60.154 57.895 0.00 0.00 31.64 5.25
2097 2190 1.174712 ACGCCAAGATGTTGCAGCTT 61.175 50.000 1.17 0.00 40.92 3.74
2098 2191 0.455633 CGCCAAGATGTTGCAGCTTC 60.456 55.000 8.19 8.19 38.05 3.86
2099 2192 0.599558 GCCAAGATGTTGCAGCTTCA 59.400 50.000 16.83 2.90 38.05 3.02
2100 2193 1.402456 GCCAAGATGTTGCAGCTTCAG 60.402 52.381 16.83 9.62 38.05 3.02
2101 2194 2.156917 CCAAGATGTTGCAGCTTCAGA 58.843 47.619 16.83 0.00 38.05 3.27
2103 2196 2.110901 AGATGTTGCAGCTTCAGAGG 57.889 50.000 16.83 0.00 0.00 3.69
2104 2197 1.093159 GATGTTGCAGCTTCAGAGGG 58.907 55.000 10.93 0.00 0.00 4.30
2107 2200 1.322442 GTTGCAGCTTCAGAGGGTTT 58.678 50.000 0.00 0.00 0.00 3.27
2109 2202 0.183492 TGCAGCTTCAGAGGGTTTGT 59.817 50.000 0.00 0.00 0.00 2.83
2111 2204 0.595095 CAGCTTCAGAGGGTTTGTGC 59.405 55.000 0.00 0.00 0.00 4.57
2112 2205 0.538287 AGCTTCAGAGGGTTTGTGCC 60.538 55.000 0.00 0.00 0.00 5.01
2114 2207 1.691196 CTTCAGAGGGTTTGTGCCAA 58.309 50.000 0.00 0.00 0.00 4.52
2115 2208 2.031120 CTTCAGAGGGTTTGTGCCAAA 58.969 47.619 0.00 0.00 0.00 3.28
2116 2209 1.398692 TCAGAGGGTTTGTGCCAAAC 58.601 50.000 17.47 17.47 0.00 2.93
2117 2210 1.110442 CAGAGGGTTTGTGCCAAACA 58.890 50.000 23.39 2.65 36.85 2.83
2124 2217 3.566273 TTGTGCCAAACAATGCTCG 57.434 47.368 0.00 0.00 43.96 5.03
2125 2218 0.597118 TTGTGCCAAACAATGCTCGC 60.597 50.000 0.00 0.00 43.96 5.03
2127 2220 0.318955 GTGCCAAACAATGCTCGCTT 60.319 50.000 0.00 0.00 0.00 4.68
2128 2221 1.068610 GTGCCAAACAATGCTCGCTTA 60.069 47.619 0.00 0.00 0.00 3.09
2130 2223 2.187707 GCCAAACAATGCTCGCTTATG 58.812 47.619 0.00 0.00 0.00 1.90
2168 6066 5.546499 ACATATATACCGACTTCCCACCATT 59.454 40.000 0.00 0.00 0.00 3.16
2173 6071 1.676006 CCGACTTCCCACCATTATTGC 59.324 52.381 0.00 0.00 0.00 3.56
2545 6699 4.903045 TTTTCGGAGAGGTTGGAATAGT 57.097 40.909 0.00 0.00 38.43 2.12
2597 6781 1.009675 GCTTATCATTGCACCGGCG 60.010 57.895 0.00 0.00 45.35 6.46
2613 6797 2.603560 CCGGCGACTGAAATTCTTCTAC 59.396 50.000 9.30 0.00 32.33 2.59
2649 6833 5.538053 TCTCTCAGCCATCCTTAGATACTTG 59.462 44.000 0.00 0.00 0.00 3.16
2769 7554 0.107945 GAGGGAGCAGCCAGTTAGTG 60.108 60.000 0.00 0.00 38.95 2.74
2792 7577 6.033513 GTGTTTTCTTTCCTTTTTGTGACTCG 59.966 38.462 0.00 0.00 0.00 4.18
2795 7580 5.890424 TCTTTCCTTTTTGTGACTCGTTT 57.110 34.783 0.00 0.00 0.00 3.60
2797 7582 6.683715 TCTTTCCTTTTTGTGACTCGTTTTT 58.316 32.000 0.00 0.00 0.00 1.94
2799 7584 4.170256 TCCTTTTTGTGACTCGTTTTTGC 58.830 39.130 0.00 0.00 0.00 3.68
2807 7592 2.890311 TGACTCGTTTTTGCAATGGGAT 59.110 40.909 0.00 0.00 0.00 3.85
2844 7629 1.069775 GGTTCTCCTACCAAACCCCA 58.930 55.000 0.00 0.00 37.13 4.96
2850 7635 1.980036 TCCTACCAAACCCCACAGTAC 59.020 52.381 0.00 0.00 0.00 2.73
2860 7645 2.171027 ACCCCACAGTACGTTTCTTTCA 59.829 45.455 0.00 0.00 0.00 2.69
2895 7680 7.624360 AGTTTCTGAACTTGTATTGTGAACA 57.376 32.000 0.00 0.00 43.48 3.18
2896 7681 8.225603 AGTTTCTGAACTTGTATTGTGAACAT 57.774 30.769 0.00 0.00 43.48 2.71
2897 7682 8.131100 AGTTTCTGAACTTGTATTGTGAACATG 58.869 33.333 0.00 0.00 43.48 3.21
2898 7683 7.566760 TTCTGAACTTGTATTGTGAACATGT 57.433 32.000 0.00 0.00 36.96 3.21
2899 7684 8.669946 TTCTGAACTTGTATTGTGAACATGTA 57.330 30.769 0.00 0.00 35.04 2.29
2900 7685 8.310406 TCTGAACTTGTATTGTGAACATGTAG 57.690 34.615 0.00 0.00 35.04 2.74
2901 7686 6.898041 TGAACTTGTATTGTGAACATGTAGC 58.102 36.000 0.00 0.00 35.04 3.58
2902 7687 6.484977 TGAACTTGTATTGTGAACATGTAGCA 59.515 34.615 0.00 0.00 35.04 3.49
2903 7688 6.486253 ACTTGTATTGTGAACATGTAGCAG 57.514 37.500 0.00 0.00 34.53 4.24
2904 7689 5.412594 ACTTGTATTGTGAACATGTAGCAGG 59.587 40.000 0.00 0.00 34.53 4.85
2905 7690 5.159273 TGTATTGTGAACATGTAGCAGGA 57.841 39.130 0.00 0.00 0.00 3.86
2920 7705 2.246719 CAGGAATACTGCTAGGTGCC 57.753 55.000 0.00 0.00 40.97 5.01
2921 7706 1.132500 AGGAATACTGCTAGGTGCCC 58.868 55.000 0.00 0.00 42.00 5.36
2926 7711 2.822643 TACTGCTAGGTGCCCAGGCT 62.823 60.000 10.58 0.00 42.00 4.58
2939 7724 2.094545 GCCCAGGCTGTAAATGAACTTG 60.095 50.000 14.43 0.00 38.26 3.16
2945 7730 4.099266 AGGCTGTAAATGAACTTGTGCAAA 59.901 37.500 0.00 0.00 0.00 3.68
2952 7737 8.226448 TGTAAATGAACTTGTGCAAAACAAAAG 58.774 29.630 0.00 0.00 44.97 2.27
2966 7751 7.068955 GCAAAACAAAAGCACCAATTATGTAC 58.931 34.615 0.00 0.00 0.00 2.90
2969 7754 4.082463 ACAAAAGCACCAATTATGTACGGG 60.082 41.667 0.00 0.00 0.00 5.28
2970 7755 3.359695 AAGCACCAATTATGTACGGGT 57.640 42.857 0.00 0.00 0.00 5.28
2976 7761 5.336134 GCACCAATTATGTACGGGTTTTTCT 60.336 40.000 0.00 0.00 0.00 2.52
2995 7780 4.916041 TCTGGACTGATTCCTTCATGTT 57.084 40.909 0.00 0.00 46.10 2.71
2996 7781 4.836825 TCTGGACTGATTCCTTCATGTTC 58.163 43.478 0.00 0.00 46.10 3.18
2999 7784 3.265791 GACTGATTCCTTCATGTTCGCT 58.734 45.455 0.00 0.00 32.72 4.93
3013 7798 0.603707 TTCGCTTGCCTCTGTCCTTG 60.604 55.000 0.00 0.00 0.00 3.61
3030 7815 2.553028 CCTTGTGTGTATCCCAGCTTGT 60.553 50.000 0.00 0.00 0.00 3.16
3031 7816 2.183478 TGTGTGTATCCCAGCTTGTG 57.817 50.000 0.00 0.00 0.00 3.33
3034 7819 2.226437 GTGTGTATCCCAGCTTGTGTTG 59.774 50.000 0.00 0.00 0.00 3.33
3071 7856 3.884693 AGTGTCTGCAATCACATGTTTCA 59.115 39.130 18.67 0.00 37.07 2.69
3072 7857 4.521639 AGTGTCTGCAATCACATGTTTCAT 59.478 37.500 18.67 0.00 37.07 2.57
3076 7861 5.118050 GTCTGCAATCACATGTTTCATGTTG 59.882 40.000 11.89 9.70 0.00 3.33
3088 7873 7.980662 ACATGTTTCATGTTGAGTTGAATCAAA 59.019 29.630 9.21 0.00 40.72 2.69
3095 7880 9.142515 TCATGTTGAGTTGAATCAAAATTATGC 57.857 29.630 0.00 0.00 40.72 3.14
3112 7897 7.678947 AATTATGCTATTCTGTGATACTGGC 57.321 36.000 0.00 0.00 0.00 4.85
3115 7900 5.459536 TGCTATTCTGTGATACTGGCTAG 57.540 43.478 0.00 0.00 0.00 3.42
3122 7907 3.296854 TGTGATACTGGCTAGGTACCTG 58.703 50.000 25.33 14.94 0.00 4.00
3127 7912 5.665812 TGATACTGGCTAGGTACCTGAAATT 59.334 40.000 25.33 6.82 0.00 1.82
3143 7928 7.210174 ACCTGAAATTTTGTTCCTTTAAGCTC 58.790 34.615 0.00 0.00 0.00 4.09
3144 7929 6.363357 CCTGAAATTTTGTTCCTTTAAGCTCG 59.637 38.462 0.00 0.00 0.00 5.03
3145 7930 6.801575 TGAAATTTTGTTCCTTTAAGCTCGT 58.198 32.000 0.00 0.00 0.00 4.18
3146 7931 7.932335 TGAAATTTTGTTCCTTTAAGCTCGTA 58.068 30.769 0.00 0.00 0.00 3.43
3147 7932 8.407064 TGAAATTTTGTTCCTTTAAGCTCGTAA 58.593 29.630 0.00 0.00 0.00 3.18
3148 7933 9.240159 GAAATTTTGTTCCTTTAAGCTCGTAAA 57.760 29.630 0.00 0.00 0.00 2.01
3149 7934 9.589111 AAATTTTGTTCCTTTAAGCTCGTAAAA 57.411 25.926 0.00 0.00 0.00 1.52
3150 7935 7.974243 TTTTGTTCCTTTAAGCTCGTAAAAC 57.026 32.000 0.00 0.00 0.00 2.43
3151 7936 6.930667 TTGTTCCTTTAAGCTCGTAAAACT 57.069 33.333 0.00 0.00 0.00 2.66
3152 7937 6.535274 TGTTCCTTTAAGCTCGTAAAACTC 57.465 37.500 0.00 0.00 0.00 3.01
3153 7938 6.285990 TGTTCCTTTAAGCTCGTAAAACTCT 58.714 36.000 0.00 0.00 0.00 3.24
3179 7964 7.715657 TGAATTAGTATTCATGAATTGGGCAC 58.284 34.615 25.26 16.52 43.93 5.01
3184 7969 6.949715 AGTATTCATGAATTGGGCACAAAAT 58.050 32.000 25.26 1.98 40.55 1.82
3185 7970 8.076910 AGTATTCATGAATTGGGCACAAAATA 57.923 30.769 25.26 0.87 40.55 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 5.217393 CCATGATGGATGTAGCAAAATTCG 58.783 41.667 5.27 0.00 40.96 3.34
51 52 4.342951 CCACCATGATGGATGTAGCAAAAT 59.657 41.667 20.11 0.00 43.02 1.82
94 95 2.040544 CCAACAATTCGGCCTCGCT 61.041 57.895 0.00 0.00 36.13 4.93
99 100 2.885113 GGCTCCAACAATTCGGCC 59.115 61.111 0.00 0.00 0.00 6.13
109 110 2.172851 AAAACATACGACGGCTCCAA 57.827 45.000 0.00 0.00 0.00 3.53
112 113 1.463444 AGCAAAAACATACGACGGCTC 59.537 47.619 0.00 0.00 0.00 4.70
114 115 2.475022 GGTAGCAAAAACATACGACGGC 60.475 50.000 0.00 0.00 0.00 5.68
123 124 0.938713 CGTCGGTGGTAGCAAAAACA 59.061 50.000 0.00 0.00 0.00 2.83
124 125 0.939419 ACGTCGGTGGTAGCAAAAAC 59.061 50.000 0.00 0.00 0.00 2.43
140 141 6.112734 TCATGGATGTAGCAGAATAAAACGT 58.887 36.000 0.00 0.00 0.00 3.99
183 184 6.176183 ACAACAAAAACAAAATCATGGGTCA 58.824 32.000 0.00 0.00 0.00 4.02
187 188 7.806960 ACAACAACAACAAAAACAAAATCATGG 59.193 29.630 0.00 0.00 0.00 3.66
207 208 3.883830 ATTTGCTGGTCACAACAACAA 57.116 38.095 0.00 0.00 32.80 2.83
209 210 3.779759 TCAATTTGCTGGTCACAACAAC 58.220 40.909 0.00 0.00 32.80 3.32
211 212 2.361757 CCTCAATTTGCTGGTCACAACA 59.638 45.455 0.00 0.00 0.00 3.33
212 213 2.622942 TCCTCAATTTGCTGGTCACAAC 59.377 45.455 7.72 0.00 0.00 3.32
243 245 2.050351 CCGTCGTCAAGCTCGTGT 60.050 61.111 0.00 0.00 0.00 4.49
245 247 4.052229 CCCCGTCGTCAAGCTCGT 62.052 66.667 0.00 0.00 0.00 4.18
327 329 3.125573 TCCTCGGTCTCGTGCTCG 61.126 66.667 0.81 0.81 37.69 5.03
451 454 2.430244 GTCGCCGTTGAAGCTCGA 60.430 61.111 0.00 0.00 0.00 4.04
498 523 1.375013 CCCAAATCGGAACCGTCGT 60.375 57.895 12.93 0.00 40.74 4.34
538 563 1.534729 GAGGCTCGACCAAACCAAAT 58.465 50.000 0.00 0.00 43.14 2.32
558 583 2.584418 CGTCAGATCTGCGCAGGG 60.584 66.667 35.36 22.06 0.00 4.45
606 631 0.390860 CAATTGTTGGGCCGGTCAAA 59.609 50.000 9.07 0.00 0.00 2.69
655 680 7.807977 ACAATACAAATGGGCATTCTACTAG 57.192 36.000 0.00 0.00 0.00 2.57
656 681 9.688091 TTTACAATACAAATGGGCATTCTACTA 57.312 29.630 0.00 0.00 0.00 1.82
657 682 8.588290 TTTACAATACAAATGGGCATTCTACT 57.412 30.769 0.00 0.00 0.00 2.57
660 685 9.985730 CATATTTACAATACAAATGGGCATTCT 57.014 29.630 0.00 0.00 0.00 2.40
662 687 8.209584 TGCATATTTACAATACAAATGGGCATT 58.790 29.630 0.00 0.00 34.09 3.56
663 688 7.733969 TGCATATTTACAATACAAATGGGCAT 58.266 30.769 0.00 0.00 34.09 4.40
695 720 9.486123 ACTACTAGATGCATATTGACATATCCT 57.514 33.333 9.74 0.00 0.00 3.24
701 726 9.011095 GGTACTACTACTAGATGCATATTGACA 57.989 37.037 9.74 0.00 0.00 3.58
702 727 8.176365 CGGTACTACTACTAGATGCATATTGAC 58.824 40.741 9.74 0.00 0.00 3.18
703 728 7.881751 ACGGTACTACTACTAGATGCATATTGA 59.118 37.037 9.74 0.00 0.00 2.57
704 729 8.041829 ACGGTACTACTACTAGATGCATATTG 57.958 38.462 0.00 0.00 0.00 1.90
705 730 9.730705 TTACGGTACTACTACTAGATGCATATT 57.269 33.333 0.00 0.00 0.00 1.28
706 731 9.730705 TTTACGGTACTACTACTAGATGCATAT 57.269 33.333 0.00 0.00 0.00 1.78
707 732 9.730705 ATTTACGGTACTACTACTAGATGCATA 57.269 33.333 0.00 0.00 0.00 3.14
710 735 9.741647 AAAATTTACGGTACTACTACTAGATGC 57.258 33.333 0.00 0.00 0.00 3.91
713 738 9.461312 TGGAAAATTTACGGTACTACTACTAGA 57.539 33.333 0.00 0.00 0.00 2.43
716 741 9.777297 TTTTGGAAAATTTACGGTACTACTACT 57.223 29.630 0.00 0.00 0.00 2.57
778 804 9.726438 AAAAATACAAGAAGCATCTACACTACT 57.274 29.630 0.00 0.00 33.77 2.57
831 857 0.319900 AGTCAAGATCACGCTGCGTT 60.320 50.000 26.77 12.65 38.32 4.84
838 864 5.203358 TGCGAATAAAAGTCAAGATCACG 57.797 39.130 0.00 0.00 0.00 4.35
1205 1238 1.390926 GAGGGGTGAGGTGGTAGGA 59.609 63.158 0.00 0.00 0.00 2.94
1272 1306 2.972819 GCAGTGGGAGGGGAGGAAC 61.973 68.421 0.00 0.00 0.00 3.62
1531 1621 1.289800 CGATGCGCCATCCAGATGAG 61.290 60.000 4.18 4.32 41.20 2.90
1553 1643 0.739813 AAACGCGGCCAGCTTAGTAG 60.740 55.000 12.47 3.87 45.59 2.57
1554 1644 1.017177 CAAACGCGGCCAGCTTAGTA 61.017 55.000 12.47 0.00 45.59 1.82
1650 1743 1.768275 TGGATCCGTGACATTATGGCT 59.232 47.619 7.39 0.00 0.00 4.75
1657 1750 0.617535 TGAGGGTGGATCCGTGACAT 60.618 55.000 7.39 0.00 37.00 3.06
1798 1891 3.190953 GCTACACGTTTACTCCACTCTCT 59.809 47.826 0.00 0.00 0.00 3.10
1801 1894 2.029649 TGGCTACACGTTTACTCCACTC 60.030 50.000 0.00 0.00 0.00 3.51
1803 1896 2.443887 TGGCTACACGTTTACTCCAC 57.556 50.000 0.00 0.00 0.00 4.02
1805 1898 3.124636 CACAATGGCTACACGTTTACTCC 59.875 47.826 0.00 0.00 0.00 3.85
1806 1899 3.124636 CCACAATGGCTACACGTTTACTC 59.875 47.826 0.00 0.00 0.00 2.59
1807 1900 3.071479 CCACAATGGCTACACGTTTACT 58.929 45.455 0.00 0.00 0.00 2.24
1808 1901 3.068560 TCCACAATGGCTACACGTTTAC 58.931 45.455 0.00 0.00 37.47 2.01
1810 1903 2.151202 CTCCACAATGGCTACACGTTT 58.849 47.619 0.00 0.00 37.47 3.60
1811 1904 1.610624 CCTCCACAATGGCTACACGTT 60.611 52.381 0.00 0.00 37.47 3.99
1812 1905 0.036388 CCTCCACAATGGCTACACGT 60.036 55.000 0.00 0.00 37.47 4.49
1813 1906 1.369091 GCCTCCACAATGGCTACACG 61.369 60.000 0.00 0.00 45.26 4.49
1814 1907 2.482326 GCCTCCACAATGGCTACAC 58.518 57.895 0.00 0.00 45.26 2.90
1820 1913 2.043652 CCCCTGCCTCCACAATGG 60.044 66.667 0.00 0.00 39.43 3.16
1821 1914 0.682209 CTTCCCCTGCCTCCACAATG 60.682 60.000 0.00 0.00 0.00 2.82
1822 1915 1.693640 CTTCCCCTGCCTCCACAAT 59.306 57.895 0.00 0.00 0.00 2.71
1825 1918 4.432741 GCCTTCCCCTGCCTCCAC 62.433 72.222 0.00 0.00 0.00 4.02
1827 1920 4.120755 CTGCCTTCCCCTGCCTCC 62.121 72.222 0.00 0.00 0.00 4.30
1828 1921 4.120755 CCTGCCTTCCCCTGCCTC 62.121 72.222 0.00 0.00 0.00 4.70
1832 1925 4.437587 CAGGCCTGCCTTCCCCTG 62.438 72.222 22.33 0.00 45.70 4.45
1836 1929 2.520657 AAATCCCAGGCCTGCCTTCC 62.521 60.000 28.39 0.00 45.70 3.46
1838 1931 0.178894 AAAAATCCCAGGCCTGCCTT 60.179 50.000 28.39 16.15 45.70 4.35
1840 1933 1.598517 CAAAAATCCCAGGCCTGCC 59.401 57.895 28.39 0.00 0.00 4.85
1850 1943 2.903135 TCACCATGGAACCCAAAAATCC 59.097 45.455 21.47 0.00 36.95 3.01
1851 1944 4.615588 TTCACCATGGAACCCAAAAATC 57.384 40.909 21.47 0.00 36.95 2.17
1852 1945 5.581350 ATTTCACCATGGAACCCAAAAAT 57.419 34.783 21.47 9.70 36.95 1.82
1854 1947 4.712476 CAATTTCACCATGGAACCCAAAA 58.288 39.130 21.47 9.23 36.95 2.44
1855 1948 3.495806 GCAATTTCACCATGGAACCCAAA 60.496 43.478 21.47 9.47 36.95 3.28
1856 1949 2.038295 GCAATTTCACCATGGAACCCAA 59.962 45.455 21.47 3.92 36.95 4.12
1857 1950 1.622811 GCAATTTCACCATGGAACCCA 59.377 47.619 21.47 0.00 38.19 4.51
1858 1951 1.622811 TGCAATTTCACCATGGAACCC 59.377 47.619 21.47 0.00 0.00 4.11
1859 1952 3.196254 AGATGCAATTTCACCATGGAACC 59.804 43.478 21.47 0.00 0.00 3.62
1860 1953 4.082081 TCAGATGCAATTTCACCATGGAAC 60.082 41.667 21.47 0.00 0.00 3.62
1862 1955 3.699413 TCAGATGCAATTTCACCATGGA 58.301 40.909 21.47 0.00 0.00 3.41
1863 1956 4.341235 AGATCAGATGCAATTTCACCATGG 59.659 41.667 11.19 11.19 0.00 3.66
1864 1957 5.067283 TGAGATCAGATGCAATTTCACCATG 59.933 40.000 0.00 0.00 0.00 3.66
1866 1959 4.591929 TGAGATCAGATGCAATTTCACCA 58.408 39.130 0.00 0.00 0.00 4.17
1867 1960 4.497674 GCTGAGATCAGATGCAATTTCACC 60.498 45.833 13.98 0.00 46.59 4.02
1869 1962 4.524053 AGCTGAGATCAGATGCAATTTCA 58.476 39.130 13.98 0.00 46.59 2.69
1870 1963 6.604012 CATAGCTGAGATCAGATGCAATTTC 58.396 40.000 13.98 0.00 46.59 2.17
1871 1964 5.048643 GCATAGCTGAGATCAGATGCAATTT 60.049 40.000 22.15 0.00 45.69 1.82
1873 1966 4.004314 GCATAGCTGAGATCAGATGCAAT 58.996 43.478 22.15 4.46 45.69 3.56
1874 1967 3.400255 GCATAGCTGAGATCAGATGCAA 58.600 45.455 22.15 2.54 45.69 4.08
1875 1968 2.289506 GGCATAGCTGAGATCAGATGCA 60.290 50.000 25.55 6.08 46.98 3.96
1877 1970 3.679824 TGGCATAGCTGAGATCAGATG 57.320 47.619 13.98 9.95 46.59 2.90
1880 1973 2.484651 GCAATGGCATAGCTGAGATCAG 59.515 50.000 0.00 5.45 42.59 2.90
1894 1987 1.787012 CCTGTCTTTTGTGCAATGGC 58.213 50.000 0.00 0.00 41.68 4.40
1895 1988 1.787012 GCCTGTCTTTTGTGCAATGG 58.213 50.000 0.00 0.00 0.00 3.16
1896 1989 1.001487 TCGCCTGTCTTTTGTGCAATG 60.001 47.619 0.00 0.00 0.00 2.82
1897 1990 1.267806 CTCGCCTGTCTTTTGTGCAAT 59.732 47.619 0.00 0.00 0.00 3.56
1898 1991 0.662619 CTCGCCTGTCTTTTGTGCAA 59.337 50.000 0.00 0.00 0.00 4.08
1899 1992 0.179059 TCTCGCCTGTCTTTTGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
1900 1993 0.514691 CTCTCGCCTGTCTTTTGTGC 59.485 55.000 0.00 0.00 0.00 4.57
1901 1994 1.795286 GACTCTCGCCTGTCTTTTGTG 59.205 52.381 0.00 0.00 0.00 3.33
1902 1995 1.270358 GGACTCTCGCCTGTCTTTTGT 60.270 52.381 0.00 0.00 34.01 2.83
1903 1996 1.433534 GGACTCTCGCCTGTCTTTTG 58.566 55.000 0.00 0.00 34.01 2.44
1908 2001 2.795297 CTCGGACTCTCGCCTGTC 59.205 66.667 0.00 0.00 0.00 3.51
1910 2003 4.200283 GGCTCGGACTCTCGCCTG 62.200 72.222 0.00 0.00 39.42 4.85
1911 2004 4.742649 TGGCTCGGACTCTCGCCT 62.743 66.667 6.74 0.00 42.90 5.52
1912 2005 4.200283 CTGGCTCGGACTCTCGCC 62.200 72.222 0.00 0.00 42.78 5.54
1913 2006 3.444805 ACTGGCTCGGACTCTCGC 61.445 66.667 0.00 0.00 0.00 5.03
1914 2007 2.487428 CACTGGCTCGGACTCTCG 59.513 66.667 0.00 0.00 0.00 4.04
1915 2008 2.888863 CCACTGGCTCGGACTCTC 59.111 66.667 0.00 0.00 0.00 3.20
1916 2009 3.386237 GCCACTGGCTCGGACTCT 61.386 66.667 13.28 0.00 46.69 3.24
1925 2018 5.353632 TGTCTTCAACATTTGCCACTGGC 62.354 47.826 13.68 13.68 40.42 4.85
1927 2020 3.713858 TGTCTTCAACATTTGCCACTG 57.286 42.857 0.00 0.00 31.20 3.66
1928 2021 4.586001 AGATTGTCTTCAACATTTGCCACT 59.414 37.500 0.00 0.00 37.82 4.00
1929 2022 4.874970 AGATTGTCTTCAACATTTGCCAC 58.125 39.130 0.00 0.00 37.82 5.01
1930 2023 4.583907 TGAGATTGTCTTCAACATTTGCCA 59.416 37.500 0.00 0.00 37.82 4.92
1931 2024 4.919754 GTGAGATTGTCTTCAACATTTGCC 59.080 41.667 0.00 0.00 37.82 4.52
1932 2025 5.766222 AGTGAGATTGTCTTCAACATTTGC 58.234 37.500 0.00 0.00 37.82 3.68
1933 2026 8.226448 GTCTAGTGAGATTGTCTTCAACATTTG 58.774 37.037 0.00 0.00 37.82 2.32
1934 2027 7.389053 GGTCTAGTGAGATTGTCTTCAACATTT 59.611 37.037 0.00 0.00 37.82 2.32
1936 2029 6.402222 GGTCTAGTGAGATTGTCTTCAACAT 58.598 40.000 0.00 0.00 37.82 2.71
1938 2031 5.046950 AGGGTCTAGTGAGATTGTCTTCAAC 60.047 44.000 0.00 0.00 36.33 3.18
1939 2032 5.047021 CAGGGTCTAGTGAGATTGTCTTCAA 60.047 44.000 0.00 0.00 37.98 2.69
1940 2033 4.464244 CAGGGTCTAGTGAGATTGTCTTCA 59.536 45.833 0.00 0.00 33.14 3.02
1941 2034 4.142049 CCAGGGTCTAGTGAGATTGTCTTC 60.142 50.000 0.00 0.00 33.14 2.87
1942 2035 3.772025 CCAGGGTCTAGTGAGATTGTCTT 59.228 47.826 0.00 0.00 33.14 3.01
1944 2037 3.366396 TCCAGGGTCTAGTGAGATTGTC 58.634 50.000 0.00 0.00 33.14 3.18
1945 2038 3.474798 TCCAGGGTCTAGTGAGATTGT 57.525 47.619 0.00 0.00 33.14 2.71
1946 2039 4.895889 TGTATCCAGGGTCTAGTGAGATTG 59.104 45.833 0.00 0.00 33.14 2.67
1947 2040 5.144159 TGTATCCAGGGTCTAGTGAGATT 57.856 43.478 0.00 0.00 33.14 2.40
1948 2041 4.816048 TGTATCCAGGGTCTAGTGAGAT 57.184 45.455 0.00 0.00 33.14 2.75
1949 2042 4.816048 ATGTATCCAGGGTCTAGTGAGA 57.184 45.455 0.00 0.00 0.00 3.27
1951 2044 8.624670 AGAATATATGTATCCAGGGTCTAGTGA 58.375 37.037 0.00 0.00 0.00 3.41
1952 2045 8.830915 AGAATATATGTATCCAGGGTCTAGTG 57.169 38.462 0.00 0.00 0.00 2.74
1962 2055 9.551734 GCAGCATCAATAGAATATATGTATCCA 57.448 33.333 0.00 0.00 0.00 3.41
1963 2056 9.551734 TGCAGCATCAATAGAATATATGTATCC 57.448 33.333 0.00 0.00 0.00 2.59
1967 2060 7.148356 CGGTTGCAGCATCAATAGAATATATGT 60.148 37.037 2.05 0.00 0.00 2.29
1969 2062 6.317140 CCGGTTGCAGCATCAATAGAATATAT 59.683 38.462 2.05 0.00 0.00 0.86
1970 2063 5.643348 CCGGTTGCAGCATCAATAGAATATA 59.357 40.000 2.05 0.00 0.00 0.86
1971 2064 4.456911 CCGGTTGCAGCATCAATAGAATAT 59.543 41.667 2.05 0.00 0.00 1.28
1972 2065 3.814842 CCGGTTGCAGCATCAATAGAATA 59.185 43.478 2.05 0.00 0.00 1.75
1973 2066 2.620115 CCGGTTGCAGCATCAATAGAAT 59.380 45.455 2.05 0.00 0.00 2.40
1975 2068 1.209261 TCCGGTTGCAGCATCAATAGA 59.791 47.619 0.00 0.00 0.00 1.98
1977 2070 2.016318 CTTCCGGTTGCAGCATCAATA 58.984 47.619 0.00 0.00 0.00 1.90
1978 2071 0.813184 CTTCCGGTTGCAGCATCAAT 59.187 50.000 0.00 0.00 0.00 2.57
1980 2073 1.675310 CCTTCCGGTTGCAGCATCA 60.675 57.895 0.00 0.00 0.00 3.07
1984 2077 1.135402 CAAATACCTTCCGGTTGCAGC 60.135 52.381 0.00 0.00 42.13 5.25
1985 2078 1.135402 GCAAATACCTTCCGGTTGCAG 60.135 52.381 16.28 2.92 42.13 4.41
1986 2079 0.885196 GCAAATACCTTCCGGTTGCA 59.115 50.000 16.28 0.00 42.13 4.08
1987 2080 1.135402 CAGCAAATACCTTCCGGTTGC 60.135 52.381 14.04 14.04 42.13 4.17
1993 2086 4.157840 CCTAACCAACAGCAAATACCTTCC 59.842 45.833 0.00 0.00 0.00 3.46
1994 2087 5.007682 TCCTAACCAACAGCAAATACCTTC 58.992 41.667 0.00 0.00 0.00 3.46
1995 2088 4.765339 GTCCTAACCAACAGCAAATACCTT 59.235 41.667 0.00 0.00 0.00 3.50
1996 2089 4.332828 GTCCTAACCAACAGCAAATACCT 58.667 43.478 0.00 0.00 0.00 3.08
1997 2090 3.126343 CGTCCTAACCAACAGCAAATACC 59.874 47.826 0.00 0.00 0.00 2.73
1998 2091 3.126343 CCGTCCTAACCAACAGCAAATAC 59.874 47.826 0.00 0.00 0.00 1.89
1999 2092 3.340034 CCGTCCTAACCAACAGCAAATA 58.660 45.455 0.00 0.00 0.00 1.40
2000 2093 2.159382 CCGTCCTAACCAACAGCAAAT 58.841 47.619 0.00 0.00 0.00 2.32
2001 2094 1.600023 CCGTCCTAACCAACAGCAAA 58.400 50.000 0.00 0.00 0.00 3.68
2003 2096 1.302192 GCCGTCCTAACCAACAGCA 60.302 57.895 0.00 0.00 0.00 4.41
2004 2097 2.388232 CGCCGTCCTAACCAACAGC 61.388 63.158 0.00 0.00 0.00 4.40
2005 2098 1.740296 CCGCCGTCCTAACCAACAG 60.740 63.158 0.00 0.00 0.00 3.16
2008 2101 4.397832 GGCCGCCGTCCTAACCAA 62.398 66.667 0.00 0.00 0.00 3.67
2010 2103 4.525949 GAGGCCGCCGTCCTAACC 62.526 72.222 3.05 0.00 33.24 2.85
2015 2108 4.821589 CAGAAGAGGCCGCCGTCC 62.822 72.222 1.49 0.00 0.00 4.79
2018 2111 2.105128 CTACAGAAGAGGCCGCCG 59.895 66.667 1.49 0.00 0.00 6.46
2019 2112 1.142097 GTCTACAGAAGAGGCCGCC 59.858 63.158 1.49 0.00 33.88 6.13
2020 2113 0.246635 TTGTCTACAGAAGAGGCCGC 59.753 55.000 0.00 0.00 33.88 6.53
2022 2115 3.691609 CCAAATTGTCTACAGAAGAGGCC 59.308 47.826 0.00 0.00 33.88 5.19
2023 2116 4.327680 ACCAAATTGTCTACAGAAGAGGC 58.672 43.478 0.00 0.00 33.88 4.70
2024 2117 6.936279 TCTACCAAATTGTCTACAGAAGAGG 58.064 40.000 0.00 0.00 33.88 3.69
2025 2118 7.831753 TCTCTACCAAATTGTCTACAGAAGAG 58.168 38.462 0.00 0.00 33.88 2.85
2026 2119 7.776618 TCTCTACCAAATTGTCTACAGAAGA 57.223 36.000 0.00 0.00 0.00 2.87
2027 2120 9.442047 AATTCTCTACCAAATTGTCTACAGAAG 57.558 33.333 0.00 0.00 0.00 2.85
2028 2121 9.436957 GAATTCTCTACCAAATTGTCTACAGAA 57.563 33.333 0.00 0.00 0.00 3.02
2029 2122 8.593679 TGAATTCTCTACCAAATTGTCTACAGA 58.406 33.333 7.05 0.00 0.00 3.41
2030 2123 8.660373 GTGAATTCTCTACCAAATTGTCTACAG 58.340 37.037 7.05 0.00 0.00 2.74
2031 2124 8.375506 AGTGAATTCTCTACCAAATTGTCTACA 58.624 33.333 8.25 0.00 0.00 2.74
2032 2125 8.779354 AGTGAATTCTCTACCAAATTGTCTAC 57.221 34.615 8.25 0.00 0.00 2.59
2033 2126 7.759886 CGAGTGAATTCTCTACCAAATTGTCTA 59.240 37.037 9.92 0.00 32.83 2.59
2035 2128 6.369065 ACGAGTGAATTCTCTACCAAATTGTC 59.631 38.462 9.92 0.00 32.83 3.18
2036 2129 6.231211 ACGAGTGAATTCTCTACCAAATTGT 58.769 36.000 9.92 0.00 32.83 2.71
2037 2130 6.454318 CGACGAGTGAATTCTCTACCAAATTG 60.454 42.308 9.92 0.00 32.83 2.32
2038 2131 5.577164 CGACGAGTGAATTCTCTACCAAATT 59.423 40.000 9.92 0.00 32.83 1.82
2039 2132 5.103000 CGACGAGTGAATTCTCTACCAAAT 58.897 41.667 9.92 0.00 32.83 2.32
2041 2134 3.754850 TCGACGAGTGAATTCTCTACCAA 59.245 43.478 9.92 0.00 32.83 3.67
2042 2135 3.340928 TCGACGAGTGAATTCTCTACCA 58.659 45.455 9.92 0.00 32.83 3.25
2044 2137 8.563289 AAATATTCGACGAGTGAATTCTCTAC 57.437 34.615 9.92 0.00 37.28 2.59
2046 2139 7.484975 AGAAATATTCGACGAGTGAATTCTCT 58.515 34.615 9.73 9.73 37.28 3.10
2047 2140 7.432545 TGAGAAATATTCGACGAGTGAATTCTC 59.567 37.037 22.78 22.78 38.38 2.87
2048 2141 7.258441 TGAGAAATATTCGACGAGTGAATTCT 58.742 34.615 7.05 13.14 37.28 2.40
2049 2142 7.451281 TGAGAAATATTCGACGAGTGAATTC 57.549 36.000 2.75 0.00 37.28 2.17
2050 2143 7.827819 TTGAGAAATATTCGACGAGTGAATT 57.172 32.000 2.75 0.00 37.28 2.17
2052 2145 6.255670 CCATTGAGAAATATTCGACGAGTGAA 59.744 38.462 2.75 0.00 34.02 3.18
2054 2147 5.748630 TCCATTGAGAAATATTCGACGAGTG 59.251 40.000 2.75 0.00 34.02 3.51
2056 2149 5.108217 CGTCCATTGAGAAATATTCGACGAG 60.108 44.000 0.00 0.00 37.87 4.18
2057 2150 4.738252 CGTCCATTGAGAAATATTCGACGA 59.262 41.667 0.00 0.00 37.87 4.20
2059 2152 4.318831 GGCGTCCATTGAGAAATATTCGAC 60.319 45.833 0.00 0.00 34.02 4.20
2061 2154 3.559655 TGGCGTCCATTGAGAAATATTCG 59.440 43.478 0.00 0.00 34.02 3.34
2063 2156 5.192927 TCTTGGCGTCCATTGAGAAATATT 58.807 37.500 0.00 0.00 31.53 1.28
2065 2158 4.214986 TCTTGGCGTCCATTGAGAAATA 57.785 40.909 0.00 0.00 31.53 1.40
2066 2159 3.071874 TCTTGGCGTCCATTGAGAAAT 57.928 42.857 0.00 0.00 31.53 2.17
2071 2164 1.811965 CAACATCTTGGCGTCCATTGA 59.188 47.619 0.00 2.87 31.53 2.57
2072 2165 1.733389 GCAACATCTTGGCGTCCATTG 60.733 52.381 0.00 2.95 31.53 2.82
2073 2166 0.527565 GCAACATCTTGGCGTCCATT 59.472 50.000 0.00 0.00 31.53 3.16
2074 2167 0.608856 TGCAACATCTTGGCGTCCAT 60.609 50.000 0.00 0.00 31.53 3.41
2075 2168 1.228094 TGCAACATCTTGGCGTCCA 60.228 52.632 0.00 0.00 0.00 4.02
2076 2169 1.503542 CTGCAACATCTTGGCGTCC 59.496 57.895 0.00 0.00 0.00 4.79
2077 2170 1.154150 GCTGCAACATCTTGGCGTC 60.154 57.895 0.00 0.00 0.00 5.19
2078 2171 1.174712 AAGCTGCAACATCTTGGCGT 61.175 50.000 1.02 0.00 0.00 5.68
2079 2172 0.455633 GAAGCTGCAACATCTTGGCG 60.456 55.000 1.02 0.00 0.00 5.69
2080 2173 0.599558 TGAAGCTGCAACATCTTGGC 59.400 50.000 1.02 0.00 0.00 4.52
2081 2174 2.156917 TCTGAAGCTGCAACATCTTGG 58.843 47.619 1.02 0.00 0.00 3.61
2082 2175 2.161808 CCTCTGAAGCTGCAACATCTTG 59.838 50.000 1.02 0.00 0.00 3.02
2084 2177 1.339824 CCCTCTGAAGCTGCAACATCT 60.340 52.381 1.02 0.00 0.00 2.90
2085 2178 1.093159 CCCTCTGAAGCTGCAACATC 58.907 55.000 1.02 0.00 0.00 3.06
2087 2180 0.183492 AACCCTCTGAAGCTGCAACA 59.817 50.000 1.02 0.23 0.00 3.33
2088 2181 1.000938 CAAACCCTCTGAAGCTGCAAC 60.001 52.381 1.02 0.00 0.00 4.17
2089 2182 1.321474 CAAACCCTCTGAAGCTGCAA 58.679 50.000 1.02 0.00 0.00 4.08
2090 2183 0.183492 ACAAACCCTCTGAAGCTGCA 59.817 50.000 1.02 0.00 0.00 4.41
2091 2184 0.595095 CACAAACCCTCTGAAGCTGC 59.405 55.000 0.00 0.00 0.00 5.25
2092 2185 0.595095 GCACAAACCCTCTGAAGCTG 59.405 55.000 0.00 0.00 0.00 4.24
2093 2186 0.538287 GGCACAAACCCTCTGAAGCT 60.538 55.000 0.00 0.00 0.00 3.74
2094 2187 0.823356 TGGCACAAACCCTCTGAAGC 60.823 55.000 0.00 0.00 31.92 3.86
2095 2188 3.419793 TGGCACAAACCCTCTGAAG 57.580 52.632 0.00 0.00 31.92 3.02
2107 2200 1.007502 GCGAGCATTGTTTGGCACA 60.008 52.632 0.00 0.00 0.00 4.57
2109 2202 1.242989 TAAGCGAGCATTGTTTGGCA 58.757 45.000 0.00 0.00 0.00 4.92
2111 2204 3.492421 ACATAAGCGAGCATTGTTTGG 57.508 42.857 0.00 0.00 0.00 3.28
2112 2205 7.324375 CCATTATACATAAGCGAGCATTGTTTG 59.676 37.037 0.00 0.00 0.00 2.93
2114 2207 6.072508 CCCATTATACATAAGCGAGCATTGTT 60.073 38.462 0.00 0.00 0.00 2.83
2115 2208 5.412594 CCCATTATACATAAGCGAGCATTGT 59.587 40.000 0.00 0.75 0.00 2.71
2116 2209 5.643348 TCCCATTATACATAAGCGAGCATTG 59.357 40.000 0.00 0.00 0.00 2.82
2117 2210 5.643777 GTCCCATTATACATAAGCGAGCATT 59.356 40.000 0.00 0.00 0.00 3.56
2118 2211 5.178797 GTCCCATTATACATAAGCGAGCAT 58.821 41.667 0.00 0.00 0.00 3.79
2119 2212 4.039852 TGTCCCATTATACATAAGCGAGCA 59.960 41.667 0.00 0.00 0.00 4.26
2120 2213 4.389077 GTGTCCCATTATACATAAGCGAGC 59.611 45.833 0.00 0.00 0.00 5.03
2121 2214 5.405571 GTGTGTCCCATTATACATAAGCGAG 59.594 44.000 0.00 0.00 0.00 5.03
2123 2216 5.053811 TGTGTGTCCCATTATACATAAGCG 58.946 41.667 0.00 0.00 0.00 4.68
2124 2217 8.792830 ATATGTGTGTCCCATTATACATAAGC 57.207 34.615 0.00 0.00 35.44 3.09
2130 2223 8.689061 TCGGTATATATGTGTGTCCCATTATAC 58.311 37.037 0.00 0.00 0.00 1.47
2168 6066 0.323302 TGCCCGTGAAGACAGCAATA 59.677 50.000 0.00 0.00 30.17 1.90
2173 6071 4.271049 CACTTATATTGCCCGTGAAGACAG 59.729 45.833 0.00 0.00 0.00 3.51
2272 6420 8.607459 CATTAGCTTGACCATCAAAACTACTAG 58.393 37.037 0.00 0.00 35.73 2.57
2314 6463 5.976534 TCAAACAATTCAAACTGGATCAACG 59.023 36.000 0.00 0.00 0.00 4.10
2597 6781 7.138692 ACTGCAATGTAGAAGAATTTCAGTC 57.861 36.000 5.12 0.00 36.08 3.51
2613 6797 2.355132 GGCTGAGAGATTGACTGCAATG 59.645 50.000 0.00 0.00 44.47 2.82
2649 6833 5.376854 TTTGCTTTGAGATTAGAACAGGC 57.623 39.130 0.00 0.00 0.00 4.85
2769 7554 6.090783 ACGAGTCACAAAAAGGAAAGAAAAC 58.909 36.000 0.00 0.00 0.00 2.43
2792 7577 5.652452 AGGTCTACTATCCCATTGCAAAAAC 59.348 40.000 1.71 0.00 0.00 2.43
2795 7580 6.763715 ATAGGTCTACTATCCCATTGCAAA 57.236 37.500 1.71 0.00 37.92 3.68
2797 7582 5.606749 ACAATAGGTCTACTATCCCATTGCA 59.393 40.000 0.00 0.00 41.54 4.08
2799 7584 7.067496 ACACAATAGGTCTACTATCCCATTG 57.933 40.000 0.00 0.00 41.54 2.82
2807 7592 7.059156 GGAGAACCTACACAATAGGTCTACTA 58.941 42.308 6.10 0.00 46.52 1.82
2844 7629 9.754382 TCTAACTAAATGAAAGAAACGTACTGT 57.246 29.630 0.00 0.00 0.00 3.55
2876 7661 7.017645 GCTACATGTTCACAATACAAGTTCAG 58.982 38.462 2.30 0.00 30.91 3.02
2878 7663 6.898041 TGCTACATGTTCACAATACAAGTTC 58.102 36.000 2.30 0.00 30.91 3.01
2879 7664 6.072508 CCTGCTACATGTTCACAATACAAGTT 60.073 38.462 2.30 0.00 30.91 2.66
2880 7665 5.412594 CCTGCTACATGTTCACAATACAAGT 59.587 40.000 2.30 0.00 32.79 3.16
2881 7666 5.643348 TCCTGCTACATGTTCACAATACAAG 59.357 40.000 2.30 0.00 0.00 3.16
2882 7667 5.555966 TCCTGCTACATGTTCACAATACAA 58.444 37.500 2.30 0.00 0.00 2.41
2883 7668 5.159273 TCCTGCTACATGTTCACAATACA 57.841 39.130 2.30 0.00 0.00 2.29
2884 7669 6.683974 ATTCCTGCTACATGTTCACAATAC 57.316 37.500 2.30 0.00 0.00 1.89
2885 7670 7.495606 CAGTATTCCTGCTACATGTTCACAATA 59.504 37.037 2.30 4.07 33.59 1.90
2886 7671 6.317140 CAGTATTCCTGCTACATGTTCACAAT 59.683 38.462 2.30 4.92 33.59 2.71
2887 7672 5.643348 CAGTATTCCTGCTACATGTTCACAA 59.357 40.000 2.30 0.00 33.59 3.33
2888 7673 5.178061 CAGTATTCCTGCTACATGTTCACA 58.822 41.667 2.30 0.00 33.59 3.58
2889 7674 5.725110 CAGTATTCCTGCTACATGTTCAC 57.275 43.478 2.30 0.00 33.59 3.18
2920 7705 3.612479 GCACAAGTTCATTTACAGCCTGG 60.612 47.826 0.00 0.00 0.00 4.45
2921 7706 3.004629 TGCACAAGTTCATTTACAGCCTG 59.995 43.478 0.00 0.00 0.00 4.85
2926 7711 7.658179 TTTGTTTTGCACAAGTTCATTTACA 57.342 28.000 0.00 0.00 46.37 2.41
2945 7730 5.465935 CCGTACATAATTGGTGCTTTTGTT 58.534 37.500 0.00 0.00 0.00 2.83
2952 7737 4.443913 AAAACCCGTACATAATTGGTGC 57.556 40.909 0.00 0.00 0.00 5.01
2961 7746 3.071892 TCAGTCCAGAAAAACCCGTACAT 59.928 43.478 0.00 0.00 0.00 2.29
2966 7751 2.488153 GGAATCAGTCCAGAAAAACCCG 59.512 50.000 0.00 0.00 46.97 5.28
2995 7780 1.004560 CAAGGACAGAGGCAAGCGA 60.005 57.895 0.00 0.00 0.00 4.93
2996 7781 1.302033 ACAAGGACAGAGGCAAGCG 60.302 57.895 0.00 0.00 0.00 4.68
2999 7784 0.546122 ACACACAAGGACAGAGGCAA 59.454 50.000 0.00 0.00 0.00 4.52
3013 7798 2.185004 ACACAAGCTGGGATACACAC 57.815 50.000 0.00 0.00 39.74 3.82
3030 7815 2.093500 ACTCACTTCAGTGTCTGCAACA 60.093 45.455 6.84 0.00 45.76 3.33
3031 7816 2.286294 CACTCACTTCAGTGTCTGCAAC 59.714 50.000 6.84 0.00 45.76 4.17
3058 7843 7.041635 TCAACTCAACATGAAACATGTGATT 57.958 32.000 16.29 8.78 31.80 2.57
3088 7873 7.456725 AGCCAGTATCACAGAATAGCATAATT 58.543 34.615 0.00 0.00 0.00 1.40
3095 7880 6.071840 GGTACCTAGCCAGTATCACAGAATAG 60.072 46.154 4.06 0.00 0.00 1.73
3112 7897 7.761038 AAGGAACAAAATTTCAGGTACCTAG 57.239 36.000 15.80 9.50 0.00 3.02
3115 7900 7.384115 GCTTAAAGGAACAAAATTTCAGGTACC 59.616 37.037 2.73 2.73 0.00 3.34
3122 7907 8.791355 TTACGAGCTTAAAGGAACAAAATTTC 57.209 30.769 0.00 0.00 0.00 2.17
3127 7912 7.281549 AGAGTTTTACGAGCTTAAAGGAACAAA 59.718 33.333 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.