Multiple sequence alignment - TraesCS7B01G429000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G429000 chr7B 100.000 3020 0 0 1 3020 697616615 697613596 0.000000e+00 5578.0
1 TraesCS7B01G429000 chr7B 87.251 1757 172 28 811 2550 697120273 697118552 0.000000e+00 1956.0
2 TraesCS7B01G429000 chr7B 85.634 1782 214 24 787 2550 697422806 697424563 0.000000e+00 1834.0
3 TraesCS7B01G429000 chr7B 85.277 1766 223 19 806 2556 695502314 695500571 0.000000e+00 1786.0
4 TraesCS7B01G429000 chr7B 83.916 1716 211 44 773 2456 92959451 92961133 0.000000e+00 1580.0
5 TraesCS7B01G429000 chr7B 93.425 730 39 5 2044 2771 694266530 694267252 0.000000e+00 1074.0
6 TraesCS7B01G429000 chr7B 93.333 255 10 5 2773 3020 694267395 694267649 1.320000e-98 370.0
7 TraesCS7B01G429000 chr7B 91.633 251 10 5 335 584 693367154 693367394 1.340000e-88 337.0
8 TraesCS7B01G429000 chr7B 91.633 251 10 5 335 584 698905351 698905591 1.340000e-88 337.0
9 TraesCS7B01G429000 chr7B 90.323 248 21 2 2774 3020 697118130 697117885 3.760000e-84 322.0
10 TraesCS7B01G429000 chr7B 89.558 249 24 1 2774 3020 698231744 698231496 6.280000e-82 315.0
11 TraesCS7B01G429000 chr7B 89.113 248 26 1 2774 3020 697537987 697538234 1.050000e-79 307.0
12 TraesCS7B01G429000 chr7B 90.500 200 18 1 2572 2771 685050453 685050651 2.310000e-66 263.0
13 TraesCS7B01G429000 chr7B 88.208 212 23 1 2562 2771 695492949 695492738 5.000000e-63 252.0
14 TraesCS7B01G429000 chr7A 93.691 1474 83 6 1086 2556 700028797 700030263 0.000000e+00 2198.0
15 TraesCS7B01G429000 chr7A 86.411 1744 181 21 815 2550 700160750 700159055 0.000000e+00 1857.0
16 TraesCS7B01G429000 chr7A 83.703 1712 218 41 773 2456 130383407 130385085 0.000000e+00 1559.0
17 TraesCS7B01G429000 chr7A 91.723 447 30 3 2077 2521 225971586 225972027 5.530000e-172 614.0
18 TraesCS7B01G429000 chr7A 94.821 251 10 1 2773 3020 700030552 700030802 3.650000e-104 388.0
19 TraesCS7B01G429000 chr7A 94.444 216 11 1 2806 3020 700158620 700158405 6.240000e-87 331.0
20 TraesCS7B01G429000 chr7A 93.069 202 9 5 2572 2771 225972223 225972421 1.060000e-74 291.0
21 TraesCS7B01G429000 chrUn 88.272 1620 155 15 723 2325 77772741 77774342 0.000000e+00 1906.0
22 TraesCS7B01G429000 chrUn 89.924 397 38 2 201 597 77771545 77771939 7.470000e-141 510.0
23 TraesCS7B01G429000 chrUn 88.400 250 25 2 2774 3020 77781857 77782105 6.330000e-77 298.0
24 TraesCS7B01G429000 chrUn 88.208 212 23 1 2562 2771 77781542 77781753 5.000000e-63 252.0
25 TraesCS7B01G429000 chrUn 97.414 116 3 0 640 755 77772610 77772725 6.600000e-47 198.0
26 TraesCS7B01G429000 chrUn 95.745 94 4 0 106 199 222674052 222673959 5.210000e-33 152.0
27 TraesCS7B01G429000 chrUn 95.745 94 4 0 106 199 229497380 229497287 5.210000e-33 152.0
28 TraesCS7B01G429000 chrUn 95.745 94 4 0 106 199 237101822 237101729 5.210000e-33 152.0
29 TraesCS7B01G429000 chrUn 96.491 57 1 1 56 112 189396876 189396931 3.210000e-15 93.5
30 TraesCS7B01G429000 chrUn 96.491 57 1 1 56 112 399419143 399419088 3.210000e-15 93.5
31 TraesCS7B01G429000 chr7D 84.253 1740 240 20 844 2564 610651447 610653171 0.000000e+00 1664.0
32 TraesCS7B01G429000 chr7D 85.090 1603 190 22 782 2361 608727484 608729060 0.000000e+00 1591.0
33 TraesCS7B01G429000 chr7D 76.706 1846 317 64 760 2548 609947328 609945539 0.000000e+00 922.0
34 TraesCS7B01G429000 chr7D 78.179 1274 226 34 787 2033 609498460 609497212 0.000000e+00 765.0
35 TraesCS7B01G429000 chr7D 90.361 249 20 2 2774 3020 608103176 608102930 1.040000e-84 324.0
36 TraesCS7B01G429000 chr7D 84.225 355 28 10 201 550 609949533 609949202 1.350000e-83 320.0
37 TraesCS7B01G429000 chr7D 89.960 249 23 1 2774 3020 610653449 610653697 1.350000e-83 320.0
38 TraesCS7B01G429000 chr7D 83.333 354 32 9 201 550 607927559 607927889 4.890000e-78 302.0
39 TraesCS7B01G429000 chr7D 93.909 197 11 1 2575 2771 609945432 609945237 2.280000e-76 296.0
40 TraesCS7B01G429000 chr7D 93.401 197 12 1 2575 2771 83292909 83292714 1.060000e-74 291.0
41 TraesCS7B01G429000 chr7D 88.208 212 23 1 2562 2771 610653134 610653345 5.000000e-63 252.0
42 TraesCS7B01G429000 chr7D 89.474 190 8 8 539 728 607929478 607929655 2.340000e-56 230.0
43 TraesCS7B01G429000 chr7D 95.745 94 4 0 106 199 381902173 381902080 5.210000e-33 152.0
44 TraesCS7B01G429000 chr7D 94.845 97 5 0 760 856 607929779 607929875 5.210000e-33 152.0
45 TraesCS7B01G429000 chr7D 95.775 71 2 1 539 609 609947607 609947538 2.460000e-21 113.0
46 TraesCS7B01G429000 chr7D 100.000 55 0 0 1 55 607927508 607927562 5.330000e-18 102.0
47 TraesCS7B01G429000 chr7D 98.182 55 1 0 1 55 608676205 608676259 2.480000e-16 97.1
48 TraesCS7B01G429000 chr7D 96.552 58 2 0 673 730 609947507 609947450 2.480000e-16 97.1
49 TraesCS7B01G429000 chr7D 98.182 55 1 0 1 55 609949584 609949530 2.480000e-16 97.1
50 TraesCS7B01G429000 chr6A 92.893 197 13 1 2575 2771 252108576 252108381 4.930000e-73 285.0
51 TraesCS7B01G429000 chr6B 95.745 94 4 0 106 199 297481642 297481549 5.210000e-33 152.0
52 TraesCS7B01G429000 chr6B 95.745 94 4 0 106 199 596634949 596635042 5.210000e-33 152.0
53 TraesCS7B01G429000 chr5B 95.745 94 4 0 106 199 567255963 567255870 5.210000e-33 152.0
54 TraesCS7B01G429000 chr1D 95.745 94 4 0 106 199 141329461 141329368 5.210000e-33 152.0
55 TraesCS7B01G429000 chr1B 95.745 94 4 0 106 199 135112211 135112118 5.210000e-33 152.0
56 TraesCS7B01G429000 chr2A 93.750 64 2 2 49 112 735196981 735197042 8.910000e-16 95.3
57 TraesCS7B01G429000 chr6D 96.491 57 1 1 56 112 124521916 124521971 3.210000e-15 93.5
58 TraesCS7B01G429000 chr4D 96.491 57 1 1 56 112 123417215 123417270 3.210000e-15 93.5
59 TraesCS7B01G429000 chr4D 96.491 57 1 1 56 112 134994470 134994415 3.210000e-15 93.5
60 TraesCS7B01G429000 chr4D 96.491 57 1 1 56 112 241119557 241119502 3.210000e-15 93.5
61 TraesCS7B01G429000 chr4D 96.491 57 1 1 56 112 241279952 241279897 3.210000e-15 93.5
62 TraesCS7B01G429000 chr4D 96.491 57 1 1 56 112 241356924 241356869 3.210000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G429000 chr7B 697613596 697616615 3019 True 5578.000000 5578 100.000000 1 3020 1 chr7B.!!$R3 3019
1 TraesCS7B01G429000 chr7B 697422806 697424563 1757 False 1834.000000 1834 85.634000 787 2550 1 chr7B.!!$F4 1763
2 TraesCS7B01G429000 chr7B 695500571 695502314 1743 True 1786.000000 1786 85.277000 806 2556 1 chr7B.!!$R2 1750
3 TraesCS7B01G429000 chr7B 92959451 92961133 1682 False 1580.000000 1580 83.916000 773 2456 1 chr7B.!!$F1 1683
4 TraesCS7B01G429000 chr7B 697117885 697120273 2388 True 1139.000000 1956 88.787000 811 3020 2 chr7B.!!$R5 2209
5 TraesCS7B01G429000 chr7B 694266530 694267649 1119 False 722.000000 1074 93.379000 2044 3020 2 chr7B.!!$F7 976
6 TraesCS7B01G429000 chr7A 130383407 130385085 1678 False 1559.000000 1559 83.703000 773 2456 1 chr7A.!!$F1 1683
7 TraesCS7B01G429000 chr7A 700028797 700030802 2005 False 1293.000000 2198 94.256000 1086 3020 2 chr7A.!!$F3 1934
8 TraesCS7B01G429000 chr7A 700158405 700160750 2345 True 1094.000000 1857 90.427500 815 3020 2 chr7A.!!$R1 2205
9 TraesCS7B01G429000 chr7A 225971586 225972421 835 False 452.500000 614 92.396000 2077 2771 2 chr7A.!!$F2 694
10 TraesCS7B01G429000 chrUn 77771545 77774342 2797 False 871.333333 1906 91.870000 201 2325 3 chrUn.!!$F2 2124
11 TraesCS7B01G429000 chrUn 77781542 77782105 563 False 275.000000 298 88.304000 2562 3020 2 chrUn.!!$F3 458
12 TraesCS7B01G429000 chr7D 608727484 608729060 1576 False 1591.000000 1591 85.090000 782 2361 1 chr7D.!!$F2 1579
13 TraesCS7B01G429000 chr7D 609497212 609498460 1248 True 765.000000 765 78.179000 787 2033 1 chr7D.!!$R4 1246
14 TraesCS7B01G429000 chr7D 610651447 610653697 2250 False 745.333333 1664 87.473667 844 3020 3 chr7D.!!$F4 2176
15 TraesCS7B01G429000 chr7D 609945237 609949584 4347 True 307.533333 922 90.891500 1 2771 6 chr7D.!!$R5 2770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 160 0.036388 GCTGCCTGTGTGCCTACTAA 60.036 55.0 0.0 0.0 0.00 2.24 F
957 3326 0.105778 CTCCTTCCTCCGCAGATTCC 59.894 60.0 0.0 0.0 0.00 3.01 F
1078 3455 0.109272 CGCAGCCGACTTCTACTTCA 60.109 55.0 0.0 0.0 36.29 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1078 3455 0.722676 TAGTGGGAGGGGATGAAGGT 59.277 55.000 0.00 0.0 0.00 3.50 R
1846 4257 2.694213 GGCTTCTCTCCTTGTGAAGAC 58.306 52.381 10.42 5.0 44.55 3.01 R
2997 5822 1.849039 CTCCCCTGGATCTGGACAAAT 59.151 52.381 0.00 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.397190 GGCGTTTGTCGATCATATGCG 60.397 52.381 0.00 0.00 39.65 4.73
55 56 1.593006 CGGTGCGAATATTGTGGAGTC 59.407 52.381 0.00 0.00 0.00 3.36
56 57 1.940613 GGTGCGAATATTGTGGAGTCC 59.059 52.381 0.73 0.73 0.00 3.85
57 58 1.940613 GTGCGAATATTGTGGAGTCCC 59.059 52.381 6.74 0.00 0.00 4.46
58 59 1.837439 TGCGAATATTGTGGAGTCCCT 59.163 47.619 6.74 0.00 0.00 4.20
59 60 2.238646 TGCGAATATTGTGGAGTCCCTT 59.761 45.455 6.74 0.00 0.00 3.95
60 61 3.452990 TGCGAATATTGTGGAGTCCCTTA 59.547 43.478 6.74 0.00 0.00 2.69
61 62 4.102524 TGCGAATATTGTGGAGTCCCTTAT 59.897 41.667 6.74 0.00 0.00 1.73
62 63 4.691216 GCGAATATTGTGGAGTCCCTTATC 59.309 45.833 6.74 0.00 0.00 1.75
63 64 5.511545 GCGAATATTGTGGAGTCCCTTATCT 60.512 44.000 6.74 0.00 0.00 1.98
64 65 6.525629 CGAATATTGTGGAGTCCCTTATCTT 58.474 40.000 6.74 0.00 0.00 2.40
65 66 6.425114 CGAATATTGTGGAGTCCCTTATCTTG 59.575 42.308 6.74 0.00 0.00 3.02
66 67 7.451731 AATATTGTGGAGTCCCTTATCTTGA 57.548 36.000 6.74 0.00 0.00 3.02
67 68 5.983333 ATTGTGGAGTCCCTTATCTTGAT 57.017 39.130 6.74 0.00 0.00 2.57
68 69 8.742125 ATATTGTGGAGTCCCTTATCTTGATA 57.258 34.615 6.74 0.00 0.00 2.15
69 70 7.639062 ATTGTGGAGTCCCTTATCTTGATAT 57.361 36.000 6.74 0.00 0.00 1.63
70 71 8.742125 ATTGTGGAGTCCCTTATCTTGATATA 57.258 34.615 6.74 0.00 0.00 0.86
71 72 7.782897 TGTGGAGTCCCTTATCTTGATATAG 57.217 40.000 6.74 0.00 0.00 1.31
72 73 7.535738 TGTGGAGTCCCTTATCTTGATATAGA 58.464 38.462 6.74 0.00 0.00 1.98
73 74 8.010697 TGTGGAGTCCCTTATCTTGATATAGAA 58.989 37.037 6.74 0.00 0.00 2.10
74 75 9.041354 GTGGAGTCCCTTATCTTGATATAGAAT 57.959 37.037 6.74 0.00 0.00 2.40
139 140 2.880963 TTTTTCCTTCCTTGCAACGG 57.119 45.000 0.00 1.43 0.00 4.44
140 141 1.036707 TTTTCCTTCCTTGCAACGGG 58.963 50.000 12.99 6.72 0.00 5.28
141 142 1.460273 TTTCCTTCCTTGCAACGGGC 61.460 55.000 12.99 0.00 45.13 6.13
142 143 2.282462 CCTTCCTTGCAACGGGCT 60.282 61.111 12.99 0.00 45.15 5.19
143 144 2.629656 CCTTCCTTGCAACGGGCTG 61.630 63.158 12.99 0.00 45.15 4.85
144 145 3.273080 CTTCCTTGCAACGGGCTGC 62.273 63.158 12.99 0.00 45.15 5.25
147 148 4.047059 CTTGCAACGGGCTGCCTG 62.047 66.667 25.62 25.62 45.15 4.85
148 149 4.892965 TTGCAACGGGCTGCCTGT 62.893 61.111 27.12 27.12 46.37 4.00
151 152 3.663176 CAACGGGCTGCCTGTGTG 61.663 66.667 32.39 25.30 43.15 3.82
155 156 4.033776 GGGCTGCCTGTGTGCCTA 62.034 66.667 19.68 0.00 45.45 3.93
156 157 2.747855 GGCTGCCTGTGTGCCTAC 60.748 66.667 12.43 0.00 43.05 3.18
157 158 2.348998 GCTGCCTGTGTGCCTACT 59.651 61.111 0.00 0.00 0.00 2.57
158 159 1.596934 GCTGCCTGTGTGCCTACTA 59.403 57.895 0.00 0.00 0.00 1.82
159 160 0.036388 GCTGCCTGTGTGCCTACTAA 60.036 55.000 0.00 0.00 0.00 2.24
160 161 1.407437 GCTGCCTGTGTGCCTACTAAT 60.407 52.381 0.00 0.00 0.00 1.73
161 162 2.158957 GCTGCCTGTGTGCCTACTAATA 60.159 50.000 0.00 0.00 0.00 0.98
162 163 3.458189 CTGCCTGTGTGCCTACTAATAC 58.542 50.000 0.00 0.00 0.00 1.89
163 164 3.104512 TGCCTGTGTGCCTACTAATACT 58.895 45.455 0.00 0.00 0.00 2.12
164 165 3.517901 TGCCTGTGTGCCTACTAATACTT 59.482 43.478 0.00 0.00 0.00 2.24
165 166 4.712829 TGCCTGTGTGCCTACTAATACTTA 59.287 41.667 0.00 0.00 0.00 2.24
166 167 5.048507 GCCTGTGTGCCTACTAATACTTAC 58.951 45.833 0.00 0.00 0.00 2.34
167 168 5.163437 GCCTGTGTGCCTACTAATACTTACT 60.163 44.000 0.00 0.00 0.00 2.24
168 169 6.629739 GCCTGTGTGCCTACTAATACTTACTT 60.630 42.308 0.00 0.00 0.00 2.24
169 170 7.417116 GCCTGTGTGCCTACTAATACTTACTTA 60.417 40.741 0.00 0.00 0.00 2.24
170 171 7.919621 CCTGTGTGCCTACTAATACTTACTTAC 59.080 40.741 0.00 0.00 0.00 2.34
171 172 8.585471 TGTGTGCCTACTAATACTTACTTACT 57.415 34.615 0.00 0.00 0.00 2.24
172 173 9.028284 TGTGTGCCTACTAATACTTACTTACTT 57.972 33.333 0.00 0.00 0.00 2.24
173 174 9.513727 GTGTGCCTACTAATACTTACTTACTTC 57.486 37.037 0.00 0.00 0.00 3.01
174 175 9.246670 TGTGCCTACTAATACTTACTTACTTCA 57.753 33.333 0.00 0.00 0.00 3.02
181 182 9.379791 ACTAATACTTACTTACTTCAATGGTGC 57.620 33.333 0.00 0.00 0.00 5.01
182 183 6.903883 ATACTTACTTACTTCAATGGTGCG 57.096 37.500 0.00 0.00 0.00 5.34
183 184 3.435671 ACTTACTTACTTCAATGGTGCGC 59.564 43.478 0.00 0.00 0.00 6.09
184 185 2.185004 ACTTACTTCAATGGTGCGCT 57.815 45.000 9.73 0.00 0.00 5.92
185 186 3.328382 ACTTACTTCAATGGTGCGCTA 57.672 42.857 9.73 0.00 0.00 4.26
186 187 3.670625 ACTTACTTCAATGGTGCGCTAA 58.329 40.909 9.73 0.00 0.00 3.09
187 188 3.435671 ACTTACTTCAATGGTGCGCTAAC 59.564 43.478 9.73 0.00 0.00 2.34
188 189 2.185004 ACTTCAATGGTGCGCTAACT 57.815 45.000 9.73 0.00 0.00 2.24
189 190 2.504367 ACTTCAATGGTGCGCTAACTT 58.496 42.857 9.73 0.00 0.00 2.66
190 191 2.884639 ACTTCAATGGTGCGCTAACTTT 59.115 40.909 9.73 0.00 0.00 2.66
191 192 4.069304 ACTTCAATGGTGCGCTAACTTTA 58.931 39.130 9.73 0.00 0.00 1.85
192 193 4.154195 ACTTCAATGGTGCGCTAACTTTAG 59.846 41.667 9.73 0.00 0.00 1.85
193 194 3.932822 TCAATGGTGCGCTAACTTTAGA 58.067 40.909 9.73 0.00 32.47 2.10
194 195 4.320023 TCAATGGTGCGCTAACTTTAGAA 58.680 39.130 9.73 0.00 32.47 2.10
195 196 4.153475 TCAATGGTGCGCTAACTTTAGAAC 59.847 41.667 9.73 0.00 32.47 3.01
196 197 2.063266 TGGTGCGCTAACTTTAGAACG 58.937 47.619 9.73 0.00 32.47 3.95
197 198 2.288334 TGGTGCGCTAACTTTAGAACGA 60.288 45.455 9.73 0.00 32.47 3.85
198 199 2.344741 GGTGCGCTAACTTTAGAACGAG 59.655 50.000 9.73 0.00 32.47 4.18
199 200 2.985139 GTGCGCTAACTTTAGAACGAGT 59.015 45.455 9.73 0.00 32.47 4.18
210 211 6.553524 ACTTTAGAACGAGTGAGTGTATAGC 58.446 40.000 0.00 0.00 0.00 2.97
219 220 2.782192 GTGAGTGTATAGCGCTAACACG 59.218 50.000 32.68 0.00 46.33 4.49
221 222 0.850856 GTGTATAGCGCTAACACGGC 59.149 55.000 29.51 19.97 34.72 5.68
260 261 1.890876 TTGCCGACTTGCAACACTAT 58.109 45.000 0.00 0.00 45.77 2.12
264 265 2.333926 CCGACTTGCAACACTATTCGA 58.666 47.619 0.00 0.00 29.93 3.71
271 272 7.214449 CGACTTGCAACACTATTCGATAAAAAG 59.786 37.037 0.00 0.00 29.93 2.27
284 285 7.938140 TTCGATAAAAAGGGAATGTTCTCAT 57.062 32.000 0.00 0.00 35.59 2.90
321 322 8.048534 ACTTTGATCATGAAGTGGATACTTTG 57.951 34.615 11.20 0.00 46.79 2.77
323 324 4.571984 TGATCATGAAGTGGATACTTTGCG 59.428 41.667 0.00 0.00 46.79 4.85
327 328 4.274602 TGAAGTGGATACTTTGCGGTTA 57.725 40.909 0.00 0.00 46.79 2.85
333 334 3.196039 TGGATACTTTGCGGTTACAGCTA 59.804 43.478 9.09 0.00 34.26 3.32
395 396 1.277557 AGCTTTGAGTGGTAGCTCCTG 59.722 52.381 0.00 0.00 41.15 3.86
396 397 1.276421 GCTTTGAGTGGTAGCTCCTGA 59.724 52.381 0.00 0.00 37.07 3.86
399 400 4.202305 GCTTTGAGTGGTAGCTCCTGATAT 60.202 45.833 0.00 0.00 37.07 1.63
405 406 4.965532 AGTGGTAGCTCCTGATATTTCTGT 59.034 41.667 0.00 0.00 37.07 3.41
415 416 6.103997 TCCTGATATTTCTGTAACGGTGTTC 58.896 40.000 0.00 0.00 0.00 3.18
444 449 2.591715 GGCGCGTGGCATATCCTT 60.592 61.111 18.64 0.00 46.16 3.36
457 462 5.248477 TGGCATATCCTTGATAGGGTCTAAC 59.752 44.000 0.00 0.00 42.26 2.34
469 474 7.005296 TGATAGGGTCTAACTAGATGGAGAAC 58.995 42.308 0.00 0.00 34.39 3.01
471 476 4.957327 AGGGTCTAACTAGATGGAGAACAC 59.043 45.833 0.00 0.00 34.39 3.32
484 489 2.514267 GAACACGACCCGTTCTCAC 58.486 57.895 0.00 0.00 38.32 3.51
526 532 5.087323 AGAATGTGGAGAGGACAGTTCTTA 58.913 41.667 0.00 0.00 0.00 2.10
574 2186 6.349243 TCCAACTCGTACTCCATCTAAAAA 57.651 37.500 0.00 0.00 0.00 1.94
609 2863 9.062674 GTACTCTTTGAAACTTCTTTTGAACAC 57.937 33.333 0.00 0.00 34.31 3.32
611 2865 5.571357 TCTTTGAAACTTCTTTTGAACACGC 59.429 36.000 0.00 0.00 34.31 5.34
612 2866 4.427096 TGAAACTTCTTTTGAACACGCA 57.573 36.364 0.00 0.00 34.31 5.24
618 2872 6.131544 ACTTCTTTTGAACACGCAGTATTT 57.868 33.333 0.00 0.00 34.41 1.40
680 2934 3.054287 TGGAAACTTGGCCCGTCATTATA 60.054 43.478 0.00 0.00 0.00 0.98
741 3081 2.060383 CATCTCGTCCAGGGCAGGA 61.060 63.158 0.00 0.00 34.64 3.86
953 3322 3.077556 GGCTCCTTCCTCCGCAGA 61.078 66.667 0.00 0.00 0.00 4.26
954 3323 2.439104 GGCTCCTTCCTCCGCAGAT 61.439 63.158 0.00 0.00 0.00 2.90
956 3325 0.531753 GCTCCTTCCTCCGCAGATTC 60.532 60.000 0.00 0.00 0.00 2.52
957 3326 0.105778 CTCCTTCCTCCGCAGATTCC 59.894 60.000 0.00 0.00 0.00 3.01
958 3327 1.227380 CCTTCCTCCGCAGATTCCG 60.227 63.158 0.00 0.00 0.00 4.30
959 3328 1.884926 CTTCCTCCGCAGATTCCGC 60.885 63.158 0.00 0.00 0.00 5.54
988 3357 1.765314 CACCAATCCTCGGATTCCTCT 59.235 52.381 8.19 0.00 42.30 3.69
1078 3455 0.109272 CGCAGCCGACTTCTACTTCA 60.109 55.000 0.00 0.00 36.29 3.02
1121 3498 2.662596 GACCGTGCAGGACATCCA 59.337 61.111 8.24 0.00 45.00 3.41
1560 3959 1.158007 ACTGGGACTGGGTGGAATTT 58.842 50.000 0.00 0.00 0.00 1.82
1595 4000 1.805869 CTCTTGCTTGACACCAGGAG 58.194 55.000 0.00 0.00 0.00 3.69
1596 4001 0.250467 TCTTGCTTGACACCAGGAGC 60.250 55.000 0.00 0.00 35.74 4.70
1597 4002 0.535780 CTTGCTTGACACCAGGAGCA 60.536 55.000 0.00 0.00 42.84 4.26
1598 4003 0.535780 TTGCTTGACACCAGGAGCAG 60.536 55.000 0.00 0.00 44.90 4.24
1599 4004 1.673665 GCTTGACACCAGGAGCAGG 60.674 63.158 0.00 0.00 35.29 4.85
1600 4005 2.061220 CTTGACACCAGGAGCAGGA 58.939 57.895 0.00 0.00 0.00 3.86
1683 4094 3.732849 GTGGAGGCAGGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1685 4096 2.614013 GGAGGCAGGGGAAGGGAA 60.614 66.667 0.00 0.00 0.00 3.97
1846 4257 2.254546 TGCAACACAGAGGTACTTGG 57.745 50.000 0.00 0.00 41.55 3.61
1929 4352 2.101750 TGTCAAGACGTTCCAGCTACAA 59.898 45.455 0.00 0.00 0.00 2.41
1941 4364 5.116084 TCCAGCTACAAAGGCTTTATGAT 57.884 39.130 12.95 1.70 38.03 2.45
2008 4434 4.018141 TCCCACCATCATTCTTGTCTTCAT 60.018 41.667 0.00 0.00 0.00 2.57
2058 4484 5.862924 TTGCTTCCAAGTTATCTCTTTCG 57.137 39.130 0.00 0.00 0.00 3.46
2063 4490 4.174009 TCCAAGTTATCTCTTTCGCTTCG 58.826 43.478 0.00 0.00 0.00 3.79
2067 4494 6.090358 CCAAGTTATCTCTTTCGCTTCGTTAA 59.910 38.462 0.00 0.00 0.00 2.01
2129 4564 7.118101 TGGCAATTGCTAATTCTTGTTTGATTC 59.882 33.333 28.42 6.99 41.70 2.52
2278 4737 4.391216 CACTATGAGTAGCTTATGCATGGC 59.609 45.833 10.16 13.54 42.74 4.40
2279 4738 3.497103 ATGAGTAGCTTATGCATGGCA 57.503 42.857 22.27 0.00 44.86 4.92
2403 4884 7.392766 TCTGGTATACCTTGGATTGATTCAT 57.607 36.000 22.41 0.00 36.82 2.57
2483 4965 3.198853 AGATGTAGGGAGGCAGAAAAGTC 59.801 47.826 0.00 0.00 0.00 3.01
2497 4979 5.392811 GCAGAAAAGTCCTCCTTTCATCATG 60.393 44.000 0.00 0.00 42.62 3.07
2498 4980 4.704057 AGAAAAGTCCTCCTTTCATCATGC 59.296 41.667 0.00 0.00 42.62 4.06
2550 5076 7.820648 ACTGTTTCAAGATAAACCTGCATAAG 58.179 34.615 0.00 0.00 38.35 1.73
2551 5077 7.665559 ACTGTTTCAAGATAAACCTGCATAAGA 59.334 33.333 0.00 0.00 38.35 2.10
2552 5078 8.579850 TGTTTCAAGATAAACCTGCATAAGAT 57.420 30.769 0.00 0.00 38.35 2.40
2553 5079 8.461222 TGTTTCAAGATAAACCTGCATAAGATG 58.539 33.333 0.00 0.00 38.35 2.90
2554 5080 7.572523 TTCAAGATAAACCTGCATAAGATGG 57.427 36.000 0.00 0.00 0.00 3.51
2555 5081 6.899089 TCAAGATAAACCTGCATAAGATGGA 58.101 36.000 0.00 0.00 0.00 3.41
2556 5082 7.520798 TCAAGATAAACCTGCATAAGATGGAT 58.479 34.615 0.00 0.00 0.00 3.41
2557 5083 7.446319 TCAAGATAAACCTGCATAAGATGGATG 59.554 37.037 0.00 0.00 0.00 3.51
2558 5084 7.083062 AGATAAACCTGCATAAGATGGATGA 57.917 36.000 0.00 0.00 0.00 2.92
2559 5085 7.696981 AGATAAACCTGCATAAGATGGATGAT 58.303 34.615 0.00 0.00 0.00 2.45
2560 5086 8.829746 AGATAAACCTGCATAAGATGGATGATA 58.170 33.333 0.00 0.00 0.00 2.15
2568 5094 7.281841 TGCATAAGATGGATGATACTGTTTCA 58.718 34.615 3.46 3.46 0.00 2.69
2642 5282 7.904094 TGAAATTGTTGTTTATTGCAGTCAAC 58.096 30.769 5.60 5.60 38.82 3.18
2712 5352 8.599624 ATCTCCAAGAAAATCATATTGGTTGT 57.400 30.769 2.99 0.00 42.32 3.32
2736 5408 9.234827 TGTGATGATTGACTGAAACATAAGAAT 57.765 29.630 0.00 0.00 0.00 2.40
2771 5446 3.636300 TGCATTGTTTCTTGCTACCAACT 59.364 39.130 0.00 0.00 39.60 3.16
2822 5640 3.004106 GCTCACTGAATTGAGTGTTTGCT 59.996 43.478 22.08 0.00 44.34 3.91
2872 5690 6.392911 TCAATATTATGCTATTCTGCCCCT 57.607 37.500 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.248054 CCACAATATTCGCACCGTGC 60.248 55.000 13.81 13.81 40.69 5.34
70 71 9.832445 TTTTTAGTGTGAACTCACTTCTATTCT 57.168 29.630 13.30 2.19 44.92 2.40
120 121 1.410882 CCCGTTGCAAGGAAGGAAAAA 59.589 47.619 20.29 0.00 0.00 1.94
121 122 1.036707 CCCGTTGCAAGGAAGGAAAA 58.963 50.000 20.29 0.00 0.00 2.29
122 123 1.460273 GCCCGTTGCAAGGAAGGAAA 61.460 55.000 20.29 0.00 40.77 3.13
123 124 1.901464 GCCCGTTGCAAGGAAGGAA 60.901 57.895 20.29 0.00 40.77 3.36
124 125 2.282180 GCCCGTTGCAAGGAAGGA 60.282 61.111 20.29 0.00 40.77 3.36
125 126 2.282462 AGCCCGTTGCAAGGAAGG 60.282 61.111 20.29 14.25 44.83 3.46
126 127 2.956987 CAGCCCGTTGCAAGGAAG 59.043 61.111 20.29 11.92 44.83 3.46
127 128 3.294493 GCAGCCCGTTGCAAGGAA 61.294 61.111 20.29 0.00 44.83 3.36
130 131 4.047059 CAGGCAGCCCGTTGCAAG 62.047 66.667 8.22 0.00 45.86 4.01
131 132 4.892965 ACAGGCAGCCCGTTGCAA 62.893 61.111 8.22 0.00 45.86 4.08
134 135 3.663176 CACACAGGCAGCCCGTTG 61.663 66.667 8.22 5.33 35.76 4.10
142 143 8.939630 AAGTAAGTATTAGTAGGCACACAGGCA 61.940 40.741 0.00 0.00 38.13 4.75
143 144 3.821421 AGTATTAGTAGGCACACAGGC 57.179 47.619 0.00 0.00 44.61 4.85
144 145 6.466885 AGTAAGTATTAGTAGGCACACAGG 57.533 41.667 0.00 0.00 31.10 4.00
145 146 8.684520 AGTAAGTAAGTATTAGTAGGCACACAG 58.315 37.037 0.00 0.00 31.83 3.66
146 147 8.585471 AGTAAGTAAGTATTAGTAGGCACACA 57.415 34.615 0.00 0.00 31.83 3.72
147 148 9.513727 GAAGTAAGTAAGTATTAGTAGGCACAC 57.486 37.037 0.00 0.00 31.83 3.82
148 149 9.246670 TGAAGTAAGTAAGTATTAGTAGGCACA 57.753 33.333 0.00 0.00 31.83 4.57
155 156 9.379791 GCACCATTGAAGTAAGTAAGTATTAGT 57.620 33.333 0.00 0.00 35.27 2.24
156 157 8.540492 CGCACCATTGAAGTAAGTAAGTATTAG 58.460 37.037 0.00 0.00 0.00 1.73
157 158 7.010738 GCGCACCATTGAAGTAAGTAAGTATTA 59.989 37.037 0.30 0.00 0.00 0.98
158 159 6.183360 GCGCACCATTGAAGTAAGTAAGTATT 60.183 38.462 0.30 0.00 0.00 1.89
159 160 5.293569 GCGCACCATTGAAGTAAGTAAGTAT 59.706 40.000 0.30 0.00 0.00 2.12
160 161 4.628333 GCGCACCATTGAAGTAAGTAAGTA 59.372 41.667 0.30 0.00 0.00 2.24
161 162 3.435671 GCGCACCATTGAAGTAAGTAAGT 59.564 43.478 0.30 0.00 0.00 2.24
162 163 3.684788 AGCGCACCATTGAAGTAAGTAAG 59.315 43.478 11.47 0.00 0.00 2.34
163 164 3.670625 AGCGCACCATTGAAGTAAGTAA 58.329 40.909 11.47 0.00 0.00 2.24
164 165 3.328382 AGCGCACCATTGAAGTAAGTA 57.672 42.857 11.47 0.00 0.00 2.24
165 166 2.185004 AGCGCACCATTGAAGTAAGT 57.815 45.000 11.47 0.00 0.00 2.24
166 167 3.684788 AGTTAGCGCACCATTGAAGTAAG 59.315 43.478 11.47 0.00 0.00 2.34
167 168 3.670625 AGTTAGCGCACCATTGAAGTAA 58.329 40.909 11.47 0.00 0.00 2.24
168 169 3.328382 AGTTAGCGCACCATTGAAGTA 57.672 42.857 11.47 0.00 0.00 2.24
169 170 2.185004 AGTTAGCGCACCATTGAAGT 57.815 45.000 11.47 0.00 0.00 3.01
170 171 3.559238 AAAGTTAGCGCACCATTGAAG 57.441 42.857 11.47 0.00 0.00 3.02
171 172 4.320023 TCTAAAGTTAGCGCACCATTGAA 58.680 39.130 11.47 0.00 0.00 2.69
172 173 3.932822 TCTAAAGTTAGCGCACCATTGA 58.067 40.909 11.47 0.00 0.00 2.57
173 174 4.403453 GTTCTAAAGTTAGCGCACCATTG 58.597 43.478 11.47 0.00 0.00 2.82
174 175 3.124636 CGTTCTAAAGTTAGCGCACCATT 59.875 43.478 11.47 0.92 0.00 3.16
175 176 2.671396 CGTTCTAAAGTTAGCGCACCAT 59.329 45.455 11.47 0.00 0.00 3.55
176 177 2.063266 CGTTCTAAAGTTAGCGCACCA 58.937 47.619 11.47 0.00 0.00 4.17
177 178 2.331194 TCGTTCTAAAGTTAGCGCACC 58.669 47.619 11.47 0.00 0.00 5.01
178 179 2.985139 ACTCGTTCTAAAGTTAGCGCAC 59.015 45.455 11.47 0.00 0.00 5.34
179 180 2.984471 CACTCGTTCTAAAGTTAGCGCA 59.016 45.455 11.47 0.00 0.00 6.09
180 181 3.240069 TCACTCGTTCTAAAGTTAGCGC 58.760 45.455 0.00 0.00 0.00 5.92
181 182 4.321217 CACTCACTCGTTCTAAAGTTAGCG 59.679 45.833 0.00 0.00 0.00 4.26
182 183 5.221130 ACACTCACTCGTTCTAAAGTTAGC 58.779 41.667 0.00 0.00 0.00 3.09
183 184 9.705471 CTATACACTCACTCGTTCTAAAGTTAG 57.295 37.037 0.00 0.00 0.00 2.34
184 185 8.180267 GCTATACACTCACTCGTTCTAAAGTTA 58.820 37.037 0.00 0.00 0.00 2.24
185 186 7.028361 GCTATACACTCACTCGTTCTAAAGTT 58.972 38.462 0.00 0.00 0.00 2.66
186 187 6.553524 GCTATACACTCACTCGTTCTAAAGT 58.446 40.000 0.00 0.00 0.00 2.66
187 188 5.677612 CGCTATACACTCACTCGTTCTAAAG 59.322 44.000 0.00 0.00 0.00 1.85
188 189 5.566623 CGCTATACACTCACTCGTTCTAAA 58.433 41.667 0.00 0.00 0.00 1.85
189 190 4.495349 GCGCTATACACTCACTCGTTCTAA 60.495 45.833 0.00 0.00 0.00 2.10
190 191 3.002042 GCGCTATACACTCACTCGTTCTA 59.998 47.826 0.00 0.00 0.00 2.10
191 192 2.223294 GCGCTATACACTCACTCGTTCT 60.223 50.000 0.00 0.00 0.00 3.01
192 193 2.110226 GCGCTATACACTCACTCGTTC 58.890 52.381 0.00 0.00 0.00 3.95
193 194 1.743958 AGCGCTATACACTCACTCGTT 59.256 47.619 8.99 0.00 0.00 3.85
194 195 1.380524 AGCGCTATACACTCACTCGT 58.619 50.000 8.99 0.00 0.00 4.18
195 196 3.242641 TGTTAGCGCTATACACTCACTCG 60.243 47.826 19.60 0.00 0.00 4.18
196 197 4.036352 GTGTTAGCGCTATACACTCACTC 58.964 47.826 32.46 19.83 39.18 3.51
197 198 3.487042 CGTGTTAGCGCTATACACTCACT 60.487 47.826 34.00 10.60 39.90 3.41
198 199 2.782192 CGTGTTAGCGCTATACACTCAC 59.218 50.000 34.00 25.52 39.90 3.51
199 200 2.223409 CCGTGTTAGCGCTATACACTCA 60.223 50.000 34.00 20.33 39.90 3.41
260 261 7.938140 ATGAGAACATTCCCTTTTTATCGAA 57.062 32.000 0.00 0.00 32.21 3.71
271 272 5.588648 TCGGATTTGTTATGAGAACATTCCC 59.411 40.000 13.45 6.11 37.87 3.97
284 285 7.680442 TCATGATCAAAGTTCGGATTTGTTA 57.320 32.000 0.00 0.00 38.50 2.41
321 322 2.287009 GGCATCAATTAGCTGTAACCGC 60.287 50.000 0.00 0.00 0.00 5.68
323 324 4.202050 CCTTGGCATCAATTAGCTGTAACC 60.202 45.833 0.00 0.00 31.75 2.85
327 328 2.025037 TCCCTTGGCATCAATTAGCTGT 60.025 45.455 0.00 0.00 31.75 4.40
333 334 3.203710 TCATCTCTCCCTTGGCATCAATT 59.796 43.478 0.00 0.00 31.75 2.32
395 396 6.735063 CGTTTGAACACCGTTACAGAAATATC 59.265 38.462 0.00 0.00 0.00 1.63
396 397 6.424509 TCGTTTGAACACCGTTACAGAAATAT 59.575 34.615 0.00 0.00 0.00 1.28
399 400 3.931468 TCGTTTGAACACCGTTACAGAAA 59.069 39.130 0.00 0.00 0.00 2.52
405 406 4.437121 CCTTGTTTCGTTTGAACACCGTTA 60.437 41.667 0.00 0.00 32.71 3.18
415 416 1.298041 ACGCGCCTTGTTTCGTTTG 60.298 52.632 5.73 0.00 0.00 2.93
444 449 6.781857 TCTCCATCTAGTTAGACCCTATCA 57.218 41.667 0.00 0.00 34.72 2.15
457 462 1.065701 CGGGTCGTGTTCTCCATCTAG 59.934 57.143 0.00 0.00 0.00 2.43
469 474 1.372997 CCTGTGAGAACGGGTCGTG 60.373 63.158 0.00 0.00 39.99 4.35
471 476 2.261671 CCCTGTGAGAACGGGTCG 59.738 66.667 3.16 0.00 34.36 4.79
501 507 3.692257 ACTGTCCTCTCCACATTCTTG 57.308 47.619 0.00 0.00 0.00 3.02
526 532 3.256704 TGGAACCATTCTAACCTGTCCT 58.743 45.455 0.00 0.00 0.00 3.85
574 2186 9.543783 AGAAGTTTCAAAGAGTACGAGTATTTT 57.456 29.630 0.00 0.00 0.00 1.82
593 2205 4.434713 ACTGCGTGTTCAAAAGAAGTTT 57.565 36.364 0.00 0.00 0.00 2.66
625 2879 3.460712 AGTCTACCCTCTCTCTCTTACCC 59.539 52.174 0.00 0.00 0.00 3.69
626 2880 4.080186 ACAGTCTACCCTCTCTCTCTTACC 60.080 50.000 0.00 0.00 0.00 2.85
627 2881 4.879545 CACAGTCTACCCTCTCTCTCTTAC 59.120 50.000 0.00 0.00 0.00 2.34
628 2882 4.626771 GCACAGTCTACCCTCTCTCTCTTA 60.627 50.000 0.00 0.00 0.00 2.10
629 2883 3.876156 GCACAGTCTACCCTCTCTCTCTT 60.876 52.174 0.00 0.00 0.00 2.85
630 2884 2.356741 GCACAGTCTACCCTCTCTCTCT 60.357 54.545 0.00 0.00 0.00 3.10
631 2885 2.021457 GCACAGTCTACCCTCTCTCTC 58.979 57.143 0.00 0.00 0.00 3.20
632 2886 1.341581 GGCACAGTCTACCCTCTCTCT 60.342 57.143 0.00 0.00 0.00 3.10
951 3320 4.162690 GGAGCGTGGGCGGAATCT 62.163 66.667 0.00 0.00 46.35 2.40
953 3322 4.778143 GTGGAGCGTGGGCGGAAT 62.778 66.667 0.00 0.00 46.35 3.01
958 3327 3.134127 GATTGGTGGAGCGTGGGC 61.134 66.667 0.00 0.00 40.37 5.36
959 3328 2.438434 GGATTGGTGGAGCGTGGG 60.438 66.667 0.00 0.00 0.00 4.61
966 3335 0.837272 GGAATCCGAGGATTGGTGGA 59.163 55.000 20.86 0.00 43.98 4.02
1055 3432 1.677966 TAGAAGTCGGCTGCGAGGT 60.678 57.895 0.00 0.00 0.00 3.85
1062 3439 1.926108 AGGTGAAGTAGAAGTCGGCT 58.074 50.000 0.00 0.00 0.00 5.52
1078 3455 0.722676 TAGTGGGAGGGGATGAAGGT 59.277 55.000 0.00 0.00 0.00 3.50
1683 4094 3.554960 GGAAACCAAACATCCCAAGCTTC 60.555 47.826 0.00 0.00 0.00 3.86
1685 4096 1.970640 GGAAACCAAACATCCCAAGCT 59.029 47.619 0.00 0.00 0.00 3.74
1720 4131 3.854666 CAATGGTATAGCTGAGATCGGG 58.145 50.000 0.00 0.00 0.00 5.14
1846 4257 2.694213 GGCTTCTCTCCTTGTGAAGAC 58.306 52.381 10.42 5.00 44.55 3.01
1929 4352 8.716674 AATATTGTGGATCATCATAAAGCCTT 57.283 30.769 0.00 0.00 0.00 4.35
2058 4484 7.005062 ACAAGTCATGTGATATTAACGAAGC 57.995 36.000 0.00 0.00 41.93 3.86
2063 4490 9.869844 GCAATAGACAAGTCATGTGATATTAAC 57.130 33.333 2.72 0.00 44.12 2.01
2067 4494 7.989170 TGAAGCAATAGACAAGTCATGTGATAT 59.011 33.333 2.72 0.00 44.12 1.63
2129 4564 3.181526 GCACAAGAAATGAGACGCTACTG 60.182 47.826 0.00 0.00 0.00 2.74
2281 4740 6.825721 AGTTTATTGTGATTCCATCAGGACTC 59.174 38.462 0.00 0.00 45.73 3.36
2282 4741 6.725364 AGTTTATTGTGATTCCATCAGGACT 58.275 36.000 0.00 0.00 45.73 3.85
2306 4777 9.502091 CCTCGAAAATAATTATATTGACCTGGA 57.498 33.333 0.00 0.00 32.06 3.86
2377 4856 7.815383 TGAATCAATCCAAGGTATACCAGATT 58.185 34.615 23.87 21.95 38.89 2.40
2403 4884 9.740239 CTTTGACTTGAATGAATTTTCTCAAGA 57.260 29.630 21.61 6.54 38.24 3.02
2483 4965 3.555527 TCTGAGCATGATGAAAGGAGG 57.444 47.619 0.00 0.00 0.00 4.30
2497 4979 9.534565 TCACAAGATAAAACTATACATCTGAGC 57.465 33.333 0.00 0.00 0.00 4.26
2551 5077 9.125026 GGTTTATCTTGAAACAGTATCATCCAT 57.875 33.333 1.86 0.00 40.43 3.41
2552 5078 8.328758 AGGTTTATCTTGAAACAGTATCATCCA 58.671 33.333 1.86 0.00 40.43 3.41
2553 5079 8.616076 CAGGTTTATCTTGAAACAGTATCATCC 58.384 37.037 1.86 0.00 40.43 3.51
2554 5080 8.125448 GCAGGTTTATCTTGAAACAGTATCATC 58.875 37.037 1.86 0.00 40.43 2.92
2555 5081 7.611467 TGCAGGTTTATCTTGAAACAGTATCAT 59.389 33.333 1.86 0.00 40.43 2.45
2556 5082 6.939730 TGCAGGTTTATCTTGAAACAGTATCA 59.060 34.615 1.86 0.00 40.43 2.15
2557 5083 7.377766 TGCAGGTTTATCTTGAAACAGTATC 57.622 36.000 1.86 0.00 40.43 2.24
2558 5084 7.944729 ATGCAGGTTTATCTTGAAACAGTAT 57.055 32.000 0.00 0.00 40.43 2.12
2559 5085 8.856153 TTATGCAGGTTTATCTTGAAACAGTA 57.144 30.769 0.00 0.00 40.43 2.74
2560 5086 7.665559 TCTTATGCAGGTTTATCTTGAAACAGT 59.334 33.333 0.00 0.00 40.43 3.55
2568 5094 6.774656 CCTTCCATCTTATGCAGGTTTATCTT 59.225 38.462 0.00 0.00 0.00 2.40
2642 5282 3.193691 ACAATCTAAGAGTGGTGGAGACG 59.806 47.826 0.00 0.00 31.53 4.18
2736 5408 3.902881 ACAATGCAACCACCTGAAAAA 57.097 38.095 0.00 0.00 0.00 1.94
2822 5640 5.821995 TCAACTGAATCTGAAACATGTGACA 59.178 36.000 0.00 1.86 0.00 3.58
2997 5822 1.849039 CTCCCCTGGATCTGGACAAAT 59.151 52.381 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.