Multiple sequence alignment - TraesCS7B01G426700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G426700 chr7B 100.000 2570 0 0 1 2570 695955806 695953237 0.000000e+00 4747.0
1 TraesCS7B01G426700 chr7B 83.355 1520 194 25 270 1777 694253439 694254911 0.000000e+00 1351.0
2 TraesCS7B01G426700 chr7B 81.565 1546 237 27 336 1852 695366243 695367769 0.000000e+00 1232.0
3 TraesCS7B01G426700 chr7B 79.895 1522 253 39 378 1884 695644365 695645848 0.000000e+00 1066.0
4 TraesCS7B01G426700 chr7B 80.906 1126 174 16 889 1999 733046465 733047564 0.000000e+00 850.0
5 TraesCS7B01G426700 chr7B 75.703 1885 329 80 312 2146 695359025 695360830 0.000000e+00 824.0
6 TraesCS7B01G426700 chr7B 74.476 1861 341 83 336 2146 697120273 697118497 0.000000e+00 682.0
7 TraesCS7B01G426700 chr7B 79.894 945 143 29 1082 2012 685067881 685068792 0.000000e+00 649.0
8 TraesCS7B01G426700 chr7B 77.819 1082 184 40 314 1372 694263138 694264186 3.630000e-173 617.0
9 TraesCS7B01G426700 chr7B 75.623 1083 215 34 312 1372 697545248 697546303 2.300000e-135 492.0
10 TraesCS7B01G426700 chr7B 78.544 783 128 19 1228 1999 697581701 697582454 1.790000e-131 479.0
11 TraesCS7B01G426700 chr7B 79.017 529 88 7 312 835 733045935 733046445 8.810000e-90 340.0
12 TraesCS7B01G426700 chr7B 76.816 647 98 30 1523 2146 697559219 697559836 1.480000e-82 316.0
13 TraesCS7B01G426700 chr7B 92.793 222 8 1 2357 2570 694256598 694256819 5.340000e-82 315.0
14 TraesCS7B01G426700 chr7B 74.923 646 118 32 1523 2146 695501144 695500521 3.280000e-64 255.0
15 TraesCS7B01G426700 chr7B 90.769 130 10 2 2237 2364 694254991 694255120 3.400000e-39 172.0
16 TraesCS7B01G426700 chr7B 75.728 206 41 9 2174 2374 695356602 695356803 7.570000e-16 95.3
17 TraesCS7B01G426700 chr7B 79.200 125 24 2 2174 2296 685051923 685052047 4.560000e-13 86.1
18 TraesCS7B01G426700 chr7D 89.694 1145 97 14 854 1994 608101120 608099993 0.000000e+00 1441.0
19 TraesCS7B01G426700 chr7D 78.413 1084 178 40 312 1372 609899998 609901048 0.000000e+00 654.0
20 TraesCS7B01G426700 chr7D 75.830 1084 197 33 336 1374 600282119 600283182 8.260000e-135 490.0
21 TraesCS7B01G426700 chr7D 84.466 206 12 7 2383 2570 608099960 608099757 4.370000e-43 185.0
22 TraesCS7B01G426700 chr7A 81.315 1338 207 19 312 1641 726416974 726418276 0.000000e+00 1046.0
23 TraesCS7B01G426700 chr7A 79.504 1049 175 20 334 1370 700074329 700073309 0.000000e+00 710.0
24 TraesCS7B01G426700 chr7A 77.870 1089 183 43 305 1372 699935665 699936716 7.810000e-175 623.0
25 TraesCS7B01G426700 chr7A 75.057 870 165 22 619 1457 700028800 700029648 8.740000e-95 357.0
26 TraesCS7B01G426700 chr7A 76.022 367 65 19 1523 1885 700159597 700159250 4.400000e-38 169.0
27 TraesCS7B01G426700 chrUn 78.180 1187 189 40 305 1457 77772799 77773949 0.000000e+00 693.0
28 TraesCS7B01G426700 chr4D 75.120 209 40 10 2174 2374 50176269 50176473 1.270000e-13 87.9
29 TraesCS7B01G426700 chr4D 74.163 209 42 9 2174 2374 464041703 464041907 2.740000e-10 76.8
30 TraesCS7B01G426700 chr4D 74.286 210 40 10 2174 2374 464046157 464046361 2.740000e-10 76.8
31 TraesCS7B01G426700 chr1B 75.120 209 40 10 2174 2374 543457620 543457824 1.270000e-13 87.9
32 TraesCS7B01G426700 chr2B 78.358 134 26 3 2174 2305 239147372 239147240 1.640000e-12 84.2
33 TraesCS7B01G426700 chr3B 73.684 209 43 10 2174 2374 141237880 141238084 1.280000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G426700 chr7B 695953237 695955806 2569 True 4747.000000 4747 100.000000 1 2570 1 chr7B.!!$R2 2569
1 TraesCS7B01G426700 chr7B 695366243 695367769 1526 False 1232.000000 1232 81.565000 336 1852 1 chr7B.!!$F4 1516
2 TraesCS7B01G426700 chr7B 695644365 695645848 1483 False 1066.000000 1066 79.895000 378 1884 1 chr7B.!!$F5 1506
3 TraesCS7B01G426700 chr7B 697118497 697120273 1776 True 682.000000 682 74.476000 336 2146 1 chr7B.!!$R3 1810
4 TraesCS7B01G426700 chr7B 685067881 685068792 911 False 649.000000 649 79.894000 1082 2012 1 chr7B.!!$F2 930
5 TraesCS7B01G426700 chr7B 694263138 694264186 1048 False 617.000000 617 77.819000 314 1372 1 chr7B.!!$F3 1058
6 TraesCS7B01G426700 chr7B 694253439 694256819 3380 False 612.666667 1351 88.972333 270 2570 3 chr7B.!!$F9 2300
7 TraesCS7B01G426700 chr7B 733045935 733047564 1629 False 595.000000 850 79.961500 312 1999 2 chr7B.!!$F11 1687
8 TraesCS7B01G426700 chr7B 697545248 697546303 1055 False 492.000000 492 75.623000 312 1372 1 chr7B.!!$F6 1060
9 TraesCS7B01G426700 chr7B 697581701 697582454 753 False 479.000000 479 78.544000 1228 1999 1 chr7B.!!$F8 771
10 TraesCS7B01G426700 chr7B 695356602 695360830 4228 False 459.650000 824 75.715500 312 2374 2 chr7B.!!$F10 2062
11 TraesCS7B01G426700 chr7B 697559219 697559836 617 False 316.000000 316 76.816000 1523 2146 1 chr7B.!!$F7 623
12 TraesCS7B01G426700 chr7B 695500521 695501144 623 True 255.000000 255 74.923000 1523 2146 1 chr7B.!!$R1 623
13 TraesCS7B01G426700 chr7D 608099757 608101120 1363 True 813.000000 1441 87.080000 854 2570 2 chr7D.!!$R1 1716
14 TraesCS7B01G426700 chr7D 609899998 609901048 1050 False 654.000000 654 78.413000 312 1372 1 chr7D.!!$F2 1060
15 TraesCS7B01G426700 chr7D 600282119 600283182 1063 False 490.000000 490 75.830000 336 1374 1 chr7D.!!$F1 1038
16 TraesCS7B01G426700 chr7A 726416974 726418276 1302 False 1046.000000 1046 81.315000 312 1641 1 chr7A.!!$F3 1329
17 TraesCS7B01G426700 chr7A 700073309 700074329 1020 True 710.000000 710 79.504000 334 1370 1 chr7A.!!$R1 1036
18 TraesCS7B01G426700 chr7A 699935665 699936716 1051 False 623.000000 623 77.870000 305 1372 1 chr7A.!!$F1 1067
19 TraesCS7B01G426700 chr7A 700028800 700029648 848 False 357.000000 357 75.057000 619 1457 1 chr7A.!!$F2 838
20 TraesCS7B01G426700 chrUn 77772799 77773949 1150 False 693.000000 693 78.180000 305 1457 1 chrUn.!!$F1 1152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.106719 GGGGGAAATCGCTCATTCCA 60.107 55.0 11.75 0.0 45.64 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2134 4418 0.248621 GCGCACTGACAAGCTGTTTT 60.249 50.0 0.3 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.593864 GGTCTCCCGATCCAGCGC 62.594 72.222 0.00 0.00 0.00 5.92
47 48 2.887568 CGCCGCCAGCTTACAGAG 60.888 66.667 0.00 0.00 40.39 3.35
48 49 2.512515 GCCGCCAGCTTACAGAGG 60.513 66.667 0.00 0.00 38.99 3.69
49 50 3.019003 GCCGCCAGCTTACAGAGGA 62.019 63.158 0.00 0.00 38.99 3.71
50 51 1.142748 CCGCCAGCTTACAGAGGAG 59.857 63.158 0.00 0.00 0.00 3.69
51 52 1.323271 CCGCCAGCTTACAGAGGAGA 61.323 60.000 0.00 0.00 0.00 3.71
52 53 0.179124 CGCCAGCTTACAGAGGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
53 54 0.179124 GCCAGCTTACAGAGGAGACG 60.179 60.000 0.00 0.00 0.00 4.18
54 55 1.178276 CCAGCTTACAGAGGAGACGT 58.822 55.000 0.00 0.00 0.00 4.34
55 56 1.135257 CCAGCTTACAGAGGAGACGTG 60.135 57.143 0.00 0.00 0.00 4.49
57 58 0.458716 GCTTACAGAGGAGACGTGCC 60.459 60.000 0.00 0.00 0.00 5.01
59 60 1.255667 TTACAGAGGAGACGTGCCCC 61.256 60.000 0.00 0.00 0.00 5.80
61 62 2.997897 AGAGGAGACGTGCCCCAC 60.998 66.667 0.00 0.00 0.00 4.61
74 75 3.917760 CCCACGCCCGATCTCCTC 61.918 72.222 0.00 0.00 0.00 3.71
76 77 4.933064 CACGCCCGATCTCCTCGC 62.933 72.222 0.00 0.00 46.25 5.03
78 79 4.335584 CGCCCGATCTCCTCGCTC 62.336 72.222 0.00 0.00 46.25 5.03
79 80 3.984749 GCCCGATCTCCTCGCTCC 61.985 72.222 0.00 0.00 46.25 4.70
80 81 3.299190 CCCGATCTCCTCGCTCCC 61.299 72.222 0.00 0.00 46.25 4.30
81 82 3.299190 CCGATCTCCTCGCTCCCC 61.299 72.222 0.00 0.00 46.25 4.81
84 85 1.456705 GATCTCCTCGCTCCCCTGT 60.457 63.158 0.00 0.00 0.00 4.00
86 87 1.045911 ATCTCCTCGCTCCCCTGTTC 61.046 60.000 0.00 0.00 0.00 3.18
87 88 2.683933 TCCTCGCTCCCCTGTTCC 60.684 66.667 0.00 0.00 0.00 3.62
88 89 4.148825 CCTCGCTCCCCTGTTCCG 62.149 72.222 0.00 0.00 0.00 4.30
129 130 3.299190 CCGCCGATCTCCTCCTCC 61.299 72.222 0.00 0.00 0.00 4.30
131 132 3.984749 GCCGATCTCCTCCTCCGC 61.985 72.222 0.00 0.00 0.00 5.54
132 133 3.665226 CCGATCTCCTCCTCCGCG 61.665 72.222 0.00 0.00 0.00 6.46
133 134 4.335584 CGATCTCCTCCTCCGCGC 62.336 72.222 0.00 0.00 0.00 6.86
134 135 3.984749 GATCTCCTCCTCCGCGCC 61.985 72.222 0.00 0.00 0.00 6.53
141 142 4.812476 TCCTCCGCGCCGTTCATG 62.812 66.667 0.00 0.00 0.00 3.07
147 148 3.195698 GCGCCGTTCATGGGTCTC 61.196 66.667 0.00 0.00 0.00 3.36
148 149 2.579201 CGCCGTTCATGGGTCTCT 59.421 61.111 0.00 0.00 0.00 3.10
149 150 1.519455 CGCCGTTCATGGGTCTCTC 60.519 63.158 0.00 0.00 0.00 3.20
150 151 1.901085 GCCGTTCATGGGTCTCTCT 59.099 57.895 0.00 0.00 0.00 3.10
151 152 0.460987 GCCGTTCATGGGTCTCTCTG 60.461 60.000 0.00 0.00 0.00 3.35
152 153 0.898320 CCGTTCATGGGTCTCTCTGT 59.102 55.000 0.00 0.00 0.00 3.41
154 155 1.468224 CGTTCATGGGTCTCTCTGTCG 60.468 57.143 0.00 0.00 0.00 4.35
155 156 1.134965 GTTCATGGGTCTCTCTGTCGG 60.135 57.143 0.00 0.00 0.00 4.79
156 157 0.331616 TCATGGGTCTCTCTGTCGGA 59.668 55.000 0.00 0.00 0.00 4.55
157 158 0.743688 CATGGGTCTCTCTGTCGGAG 59.256 60.000 1.83 1.83 43.12 4.63
158 159 0.396417 ATGGGTCTCTCTGTCGGAGG 60.396 60.000 8.86 0.35 42.10 4.30
159 160 1.755008 GGGTCTCTCTGTCGGAGGG 60.755 68.421 8.86 5.45 43.71 4.30
160 161 1.755008 GGTCTCTCTGTCGGAGGGG 60.755 68.421 8.77 2.95 42.63 4.79
161 162 1.755008 GTCTCTCTGTCGGAGGGGG 60.755 68.421 8.77 0.64 42.63 5.40
162 163 1.929088 TCTCTCTGTCGGAGGGGGA 60.929 63.158 8.77 2.87 42.63 4.81
163 164 1.000486 CTCTCTGTCGGAGGGGGAA 60.000 63.158 8.86 0.00 42.10 3.97
164 165 0.614979 CTCTCTGTCGGAGGGGGAAA 60.615 60.000 8.86 0.00 42.10 3.13
166 167 0.466124 CTCTGTCGGAGGGGGAAATC 59.534 60.000 0.11 0.00 38.35 2.17
167 168 1.144057 CTGTCGGAGGGGGAAATCG 59.856 63.158 0.00 0.00 0.00 3.34
170 171 2.109181 CGGAGGGGGAAATCGCTC 59.891 66.667 0.00 0.00 43.36 5.03
171 172 2.731571 CGGAGGGGGAAATCGCTCA 61.732 63.158 10.28 0.00 45.11 4.26
172 173 1.839894 GGAGGGGGAAATCGCTCAT 59.160 57.895 10.28 0.00 45.11 2.90
173 174 0.183731 GGAGGGGGAAATCGCTCATT 59.816 55.000 10.28 0.00 45.11 2.57
174 175 1.598882 GAGGGGGAAATCGCTCATTC 58.401 55.000 0.00 0.00 43.50 2.67
175 176 0.183731 AGGGGGAAATCGCTCATTCC 59.816 55.000 0.00 3.42 43.58 3.01
176 177 0.106719 GGGGGAAATCGCTCATTCCA 60.107 55.000 11.75 0.00 45.64 3.53
177 178 1.312815 GGGGAAATCGCTCATTCCAG 58.687 55.000 11.75 0.00 45.64 3.86
178 179 1.408822 GGGGAAATCGCTCATTCCAGT 60.409 52.381 11.75 0.00 45.64 4.00
179 180 2.158813 GGGGAAATCGCTCATTCCAGTA 60.159 50.000 11.75 0.00 45.64 2.74
180 181 3.134458 GGGAAATCGCTCATTCCAGTAG 58.866 50.000 11.75 0.00 45.64 2.57
181 182 3.134458 GGAAATCGCTCATTCCAGTAGG 58.866 50.000 6.44 0.00 43.73 3.18
197 198 4.742138 CCAGTAGGAAAATAGCTCCAGCTC 60.742 50.000 3.81 0.00 44.37 4.09
198 199 7.709195 CCAGTAGGAAAATAGCTCCAGCTCC 62.709 52.000 3.81 0.00 44.37 4.70
205 206 2.753029 GCTCCAGCTCCCAACACT 59.247 61.111 0.00 0.00 38.21 3.55
207 208 1.835927 GCTCCAGCTCCCAACACTCT 61.836 60.000 0.00 0.00 38.21 3.24
208 209 0.248843 CTCCAGCTCCCAACACTCTC 59.751 60.000 0.00 0.00 0.00 3.20
209 210 0.471780 TCCAGCTCCCAACACTCTCA 60.472 55.000 0.00 0.00 0.00 3.27
211 212 0.683973 CAGCTCCCAACACTCTCACT 59.316 55.000 0.00 0.00 0.00 3.41
212 213 0.683973 AGCTCCCAACACTCTCACTG 59.316 55.000 0.00 0.00 0.00 3.66
214 215 0.321122 CTCCCAACACTCTCACTGCC 60.321 60.000 0.00 0.00 0.00 4.85
215 216 1.669115 CCCAACACTCTCACTGCCG 60.669 63.158 0.00 0.00 0.00 5.69
217 218 1.595109 CAACACTCTCACTGCCGCA 60.595 57.895 0.00 0.00 0.00 5.69
219 220 2.029518 CACTCTCACTGCCGCACA 59.970 61.111 0.00 0.00 0.00 4.57
220 221 2.029666 ACTCTCACTGCCGCACAC 59.970 61.111 0.00 0.00 0.00 3.82
221 222 2.029518 CTCTCACTGCCGCACACA 59.970 61.111 0.00 0.00 0.00 3.72
222 223 2.025969 CTCTCACTGCCGCACACAG 61.026 63.158 0.00 0.00 41.08 3.66
223 224 3.720193 CTCACTGCCGCACACAGC 61.720 66.667 0.00 0.00 38.79 4.40
250 251 1.090052 CGGCTCCTTCCGTTCCATTC 61.090 60.000 0.00 0.00 44.18 2.67
251 252 0.748367 GGCTCCTTCCGTTCCATTCC 60.748 60.000 0.00 0.00 0.00 3.01
252 253 1.090052 GCTCCTTCCGTTCCATTCCG 61.090 60.000 0.00 0.00 0.00 4.30
254 255 0.248289 TCCTTCCGTTCCATTCCGTC 59.752 55.000 0.00 0.00 0.00 4.79
255 256 0.249398 CCTTCCGTTCCATTCCGTCT 59.751 55.000 0.00 0.00 0.00 4.18
256 257 1.641577 CTTCCGTTCCATTCCGTCTC 58.358 55.000 0.00 0.00 0.00 3.36
259 260 2.165301 CGTTCCATTCCGTCTCGCC 61.165 63.158 0.00 0.00 0.00 5.54
260 261 1.814169 GTTCCATTCCGTCTCGCCC 60.814 63.158 0.00 0.00 0.00 6.13
261 262 2.287274 TTCCATTCCGTCTCGCCCA 61.287 57.895 0.00 0.00 0.00 5.36
262 263 2.202932 CCATTCCGTCTCGCCCAG 60.203 66.667 0.00 0.00 0.00 4.45
263 264 2.202932 CATTCCGTCTCGCCCAGG 60.203 66.667 0.00 0.00 0.00 4.45
268 269 4.452733 CGTCTCGCCCAGGGGTTC 62.453 72.222 7.91 0.00 37.65 3.62
358 2470 1.215647 GTCGCCTCTGACGGACATT 59.784 57.895 0.00 0.00 0.00 2.71
524 2648 0.760567 CCTCGGGATCCTCCACATCA 60.761 60.000 12.58 0.00 38.64 3.07
526 2650 1.696336 CTCGGGATCCTCCACATCAAT 59.304 52.381 12.58 0.00 38.64 2.57
819 2993 1.550130 CGCTCACCCACCCTTTCCTA 61.550 60.000 0.00 0.00 0.00 2.94
840 3014 4.154347 CCCCTCAGCGAGCAGGAC 62.154 72.222 3.35 0.00 30.32 3.85
841 3015 4.504916 CCCTCAGCGAGCAGGACG 62.505 72.222 3.35 0.00 30.32 4.79
852 3026 4.135153 CAGGACGCTGCGGCTACT 62.135 66.667 28.53 14.63 34.07 2.57
942 3148 2.020131 GAGCATCGGACAATGGCAG 58.980 57.895 0.00 0.00 0.00 4.85
987 3193 2.075355 ATTTGGGCCTTGACACGGGA 62.075 55.000 4.53 0.00 0.00 5.14
1126 3345 2.475155 AGAGCATGGAGTTCTCCATCA 58.525 47.619 25.81 5.73 46.85 3.07
1264 3495 7.120579 TCAGTTATACCATTTTGCGAAACAGAT 59.879 33.333 0.00 0.00 0.00 2.90
1379 3618 0.532573 TTGATGAGGACAGAGTCGCC 59.467 55.000 0.00 0.00 32.65 5.54
1415 3657 2.334023 AGAGAAGCCACTCCTTGAGTT 58.666 47.619 4.46 0.00 41.37 3.01
1441 3683 8.634335 TTTCTCAATGGACATCAAGACATTAA 57.366 30.769 0.00 0.00 32.71 1.40
1444 3686 7.337689 TCTCAATGGACATCAAGACATTAAAGG 59.662 37.037 0.00 0.00 32.71 3.11
1459 3701 5.241728 ACATTAAAGGTTCAGAGGCTTTGTC 59.758 40.000 4.83 0.41 0.00 3.18
1461 3703 2.849294 AGGTTCAGAGGCTTTGTCTC 57.151 50.000 4.83 0.00 34.04 3.36
1548 3790 2.985896 TCCAACTTCCCATCATCGTTC 58.014 47.619 0.00 0.00 0.00 3.95
1562 3804 0.976641 TCGTTCTTGCCTCCACAGAT 59.023 50.000 0.00 0.00 0.00 2.90
1631 3882 8.281531 TCCTTCCCTTCATAATTATCACACAAT 58.718 33.333 0.00 0.00 0.00 2.71
1654 3907 8.767085 CAATGTGTCTAATGCTTGAATGTTTTT 58.233 29.630 0.00 0.00 0.00 1.94
1655 3908 9.979578 AATGTGTCTAATGCTTGAATGTTTTTA 57.020 25.926 0.00 0.00 0.00 1.52
1681 3934 7.838884 TGCAATTGATCATTCTTGTTTGGATA 58.161 30.769 10.34 0.00 0.00 2.59
1805 4077 9.981460 AAGAGAATGGGATTAGTAAGTGAAAAT 57.019 29.630 0.00 0.00 0.00 1.82
1893 4173 8.538039 GGTCACGACAATTATTTTAGTACTAGC 58.462 37.037 2.23 0.00 0.00 3.42
1919 4199 6.867519 TGATGGTCAAGGTAACATAGAAGA 57.132 37.500 0.00 0.00 41.41 2.87
1994 4277 2.995939 TCGAGTCATGCACAACTCATTC 59.004 45.455 23.05 4.79 41.61 2.67
1999 4283 4.934001 AGTCATGCACAACTCATTCTGTAG 59.066 41.667 0.00 0.00 0.00 2.74
2038 4322 9.520515 AGAGATAGAATGTTTTCTTTTTAGCCA 57.479 29.630 0.00 0.00 42.29 4.75
2044 4328 8.641541 AGAATGTTTTCTTTTTAGCCATCTTCA 58.358 29.630 0.00 0.00 39.18 3.02
2045 4329 8.593492 AATGTTTTCTTTTTAGCCATCTTCAC 57.407 30.769 0.00 0.00 0.00 3.18
2046 4330 7.106439 TGTTTTCTTTTTAGCCATCTTCACA 57.894 32.000 0.00 0.00 0.00 3.58
2047 4331 7.725251 TGTTTTCTTTTTAGCCATCTTCACAT 58.275 30.769 0.00 0.00 0.00 3.21
2048 4332 7.652909 TGTTTTCTTTTTAGCCATCTTCACATG 59.347 33.333 0.00 0.00 0.00 3.21
2049 4333 6.899393 TTCTTTTTAGCCATCTTCACATGT 57.101 33.333 0.00 0.00 0.00 3.21
2050 4334 7.994425 TTCTTTTTAGCCATCTTCACATGTA 57.006 32.000 0.00 0.00 0.00 2.29
2051 4335 8.579850 TTCTTTTTAGCCATCTTCACATGTAT 57.420 30.769 0.00 0.00 0.00 2.29
2052 4336 9.679661 TTCTTTTTAGCCATCTTCACATGTATA 57.320 29.630 0.00 0.00 0.00 1.47
2053 4337 9.679661 TCTTTTTAGCCATCTTCACATGTATAA 57.320 29.630 0.00 0.00 0.00 0.98
2058 4342 9.625747 TTAGCCATCTTCACATGTATAATTTCA 57.374 29.630 0.00 0.00 0.00 2.69
2059 4343 7.934457 AGCCATCTTCACATGTATAATTTCAC 58.066 34.615 0.00 0.00 0.00 3.18
2060 4344 7.013655 AGCCATCTTCACATGTATAATTTCACC 59.986 37.037 0.00 0.00 0.00 4.02
2061 4345 7.013655 GCCATCTTCACATGTATAATTTCACCT 59.986 37.037 0.00 0.00 0.00 4.00
2062 4346 8.562892 CCATCTTCACATGTATAATTTCACCTC 58.437 37.037 0.00 0.00 0.00 3.85
2063 4347 8.562892 CATCTTCACATGTATAATTTCACCTCC 58.437 37.037 0.00 0.00 0.00 4.30
2064 4348 7.861629 TCTTCACATGTATAATTTCACCTCCT 58.138 34.615 0.00 0.00 0.00 3.69
2065 4349 8.988060 TCTTCACATGTATAATTTCACCTCCTA 58.012 33.333 0.00 0.00 0.00 2.94
2066 4350 9.613428 CTTCACATGTATAATTTCACCTCCTAA 57.387 33.333 0.00 0.00 0.00 2.69
2068 4352 9.559732 TCACATGTATAATTTCACCTCCTAATG 57.440 33.333 0.00 0.00 0.00 1.90
2069 4353 9.342308 CACATGTATAATTTCACCTCCTAATGT 57.658 33.333 0.00 0.00 0.00 2.71
2070 4354 9.920946 ACATGTATAATTTCACCTCCTAATGTT 57.079 29.630 0.00 0.00 0.00 2.71
2078 4362 9.753674 AATTTCACCTCCTAATGTTATTCTGAA 57.246 29.630 0.00 0.00 0.00 3.02
2079 4363 9.753674 ATTTCACCTCCTAATGTTATTCTGAAA 57.246 29.630 0.00 0.00 0.00 2.69
2080 4364 9.753674 TTTCACCTCCTAATGTTATTCTGAAAT 57.246 29.630 0.00 0.00 0.00 2.17
2104 4388 9.845740 AATAAATATGCATAACTGGTAGTCACA 57.154 29.630 11.13 0.00 0.00 3.58
2105 4389 9.845740 ATAAATATGCATAACTGGTAGTCACAA 57.154 29.630 11.13 0.00 0.00 3.33
2106 4390 8.574251 AAATATGCATAACTGGTAGTCACAAA 57.426 30.769 11.13 0.00 0.00 2.83
2107 4391 5.880054 ATGCATAACTGGTAGTCACAAAC 57.120 39.130 0.00 0.00 0.00 2.93
2108 4392 4.709250 TGCATAACTGGTAGTCACAAACA 58.291 39.130 0.00 0.00 0.00 2.83
2109 4393 5.126779 TGCATAACTGGTAGTCACAAACAA 58.873 37.500 0.00 0.00 0.00 2.83
2110 4394 5.590663 TGCATAACTGGTAGTCACAAACAAA 59.409 36.000 0.00 0.00 0.00 2.83
2111 4395 6.095580 TGCATAACTGGTAGTCACAAACAAAA 59.904 34.615 0.00 0.00 0.00 2.44
2112 4396 7.145323 GCATAACTGGTAGTCACAAACAAAAT 58.855 34.615 0.00 0.00 0.00 1.82
2113 4397 7.326063 GCATAACTGGTAGTCACAAACAAAATC 59.674 37.037 0.00 0.00 0.00 2.17
2114 4398 5.767816 ACTGGTAGTCACAAACAAAATCC 57.232 39.130 0.00 0.00 0.00 3.01
2115 4399 4.583073 ACTGGTAGTCACAAACAAAATCCC 59.417 41.667 0.00 0.00 0.00 3.85
2116 4400 3.566322 TGGTAGTCACAAACAAAATCCCG 59.434 43.478 0.00 0.00 0.00 5.14
2117 4401 3.816523 GGTAGTCACAAACAAAATCCCGA 59.183 43.478 0.00 0.00 0.00 5.14
2118 4402 4.083484 GGTAGTCACAAACAAAATCCCGAG 60.083 45.833 0.00 0.00 0.00 4.63
2119 4403 3.551846 AGTCACAAACAAAATCCCGAGT 58.448 40.909 0.00 0.00 0.00 4.18
2120 4404 3.564225 AGTCACAAACAAAATCCCGAGTC 59.436 43.478 0.00 0.00 0.00 3.36
2121 4405 3.314080 GTCACAAACAAAATCCCGAGTCA 59.686 43.478 0.00 0.00 0.00 3.41
2122 4406 3.314080 TCACAAACAAAATCCCGAGTCAC 59.686 43.478 0.00 0.00 0.00 3.67
2123 4407 3.315191 CACAAACAAAATCCCGAGTCACT 59.685 43.478 0.00 0.00 0.00 3.41
2124 4408 3.315191 ACAAACAAAATCCCGAGTCACTG 59.685 43.478 0.00 0.00 0.00 3.66
2125 4409 1.523758 ACAAAATCCCGAGTCACTGC 58.476 50.000 0.00 0.00 0.00 4.40
2126 4410 1.072331 ACAAAATCCCGAGTCACTGCT 59.928 47.619 0.00 0.00 0.00 4.24
2127 4411 1.734465 CAAAATCCCGAGTCACTGCTC 59.266 52.381 0.00 0.00 0.00 4.26
2128 4412 1.270907 AAATCCCGAGTCACTGCTCT 58.729 50.000 0.00 0.00 33.55 4.09
2129 4413 2.145397 AATCCCGAGTCACTGCTCTA 57.855 50.000 0.00 0.00 33.55 2.43
2130 4414 2.373335 ATCCCGAGTCACTGCTCTAT 57.627 50.000 0.00 0.00 33.55 1.98
2131 4415 3.510531 ATCCCGAGTCACTGCTCTATA 57.489 47.619 0.00 0.00 33.55 1.31
2132 4416 3.510531 TCCCGAGTCACTGCTCTATAT 57.489 47.619 0.00 0.00 33.55 0.86
2133 4417 4.635699 TCCCGAGTCACTGCTCTATATA 57.364 45.455 0.00 0.00 33.55 0.86
2134 4418 4.981812 TCCCGAGTCACTGCTCTATATAA 58.018 43.478 0.00 0.00 33.55 0.98
2135 4419 5.382616 TCCCGAGTCACTGCTCTATATAAA 58.617 41.667 0.00 0.00 33.55 1.40
2136 4420 5.831525 TCCCGAGTCACTGCTCTATATAAAA 59.168 40.000 0.00 0.00 33.55 1.52
2137 4421 6.322969 TCCCGAGTCACTGCTCTATATAAAAA 59.677 38.462 0.00 0.00 33.55 1.94
2138 4422 6.421202 CCCGAGTCACTGCTCTATATAAAAAC 59.579 42.308 0.00 0.00 33.55 2.43
2139 4423 6.978659 CCGAGTCACTGCTCTATATAAAAACA 59.021 38.462 0.00 0.00 33.55 2.83
2140 4424 7.168302 CCGAGTCACTGCTCTATATAAAAACAG 59.832 40.741 0.00 0.00 33.55 3.16
2141 4425 7.306283 CGAGTCACTGCTCTATATAAAAACAGC 60.306 40.741 0.00 0.00 33.55 4.40
2142 4426 7.560368 AGTCACTGCTCTATATAAAAACAGCT 58.440 34.615 0.00 0.00 0.00 4.24
2143 4427 8.043710 AGTCACTGCTCTATATAAAAACAGCTT 58.956 33.333 0.00 0.00 0.00 3.74
2144 4428 8.119226 GTCACTGCTCTATATAAAAACAGCTTG 58.881 37.037 0.00 0.00 0.00 4.01
2145 4429 7.824289 TCACTGCTCTATATAAAAACAGCTTGT 59.176 33.333 0.00 0.00 0.00 3.16
2146 4430 8.119226 CACTGCTCTATATAAAAACAGCTTGTC 58.881 37.037 0.00 0.00 0.00 3.18
2147 4431 7.824289 ACTGCTCTATATAAAAACAGCTTGTCA 59.176 33.333 0.00 0.00 0.00 3.58
2148 4432 8.201554 TGCTCTATATAAAAACAGCTTGTCAG 57.798 34.615 0.00 0.00 0.00 3.51
2149 4433 7.824289 TGCTCTATATAAAAACAGCTTGTCAGT 59.176 33.333 0.00 0.00 0.00 3.41
2150 4434 8.119226 GCTCTATATAAAAACAGCTTGTCAGTG 58.881 37.037 0.00 0.00 0.00 3.66
2151 4435 7.974675 TCTATATAAAAACAGCTTGTCAGTGC 58.025 34.615 0.00 0.00 0.00 4.40
2152 4436 2.193306 AAAAACAGCTTGTCAGTGCG 57.807 45.000 0.00 0.00 0.00 5.34
2153 4437 0.248621 AAAACAGCTTGTCAGTGCGC 60.249 50.000 0.00 0.00 0.00 6.09
2154 4438 1.375853 AAACAGCTTGTCAGTGCGCA 61.376 50.000 5.66 5.66 0.00 6.09
2155 4439 2.051804 AACAGCTTGTCAGTGCGCAC 62.052 55.000 32.79 32.79 0.00 5.34
2156 4440 2.203056 AGCTTGTCAGTGCGCACA 60.203 55.556 39.21 19.92 0.00 4.57
2157 4441 1.819208 AGCTTGTCAGTGCGCACAA 60.819 52.632 39.21 25.36 0.00 3.33
2158 4442 1.063972 GCTTGTCAGTGCGCACAAA 59.936 52.632 39.21 25.00 32.16 2.83
2159 4443 1.202348 GCTTGTCAGTGCGCACAAAC 61.202 55.000 39.21 33.01 32.16 2.93
2160 4444 0.378257 CTTGTCAGTGCGCACAAACT 59.622 50.000 39.21 18.73 32.16 2.66
2161 4445 1.597195 CTTGTCAGTGCGCACAAACTA 59.403 47.619 39.21 28.76 32.16 2.24
2162 4446 1.657822 TGTCAGTGCGCACAAACTAA 58.342 45.000 39.21 19.43 0.00 2.24
2163 4447 2.010497 TGTCAGTGCGCACAAACTAAA 58.990 42.857 39.21 18.78 0.00 1.85
2164 4448 2.420372 TGTCAGTGCGCACAAACTAAAA 59.580 40.909 39.21 18.46 0.00 1.52
2165 4449 3.066064 TGTCAGTGCGCACAAACTAAAAT 59.934 39.130 39.21 15.19 0.00 1.82
2166 4450 4.041723 GTCAGTGCGCACAAACTAAAATT 58.958 39.130 39.21 14.41 0.00 1.82
2167 4451 4.146443 GTCAGTGCGCACAAACTAAAATTC 59.854 41.667 39.21 10.53 0.00 2.17
2168 4452 4.036262 TCAGTGCGCACAAACTAAAATTCT 59.964 37.500 39.21 13.65 0.00 2.40
2169 4453 4.739716 CAGTGCGCACAAACTAAAATTCTT 59.260 37.500 39.21 13.18 0.00 2.52
2170 4454 4.739716 AGTGCGCACAAACTAAAATTCTTG 59.260 37.500 39.21 0.00 0.00 3.02
2171 4455 4.502645 GTGCGCACAAACTAAAATTCTTGT 59.497 37.500 34.52 0.00 32.31 3.16
2172 4456 4.737765 TGCGCACAAACTAAAATTCTTGTC 59.262 37.500 5.66 0.00 29.70 3.18
2173 4457 4.976116 GCGCACAAACTAAAATTCTTGTCT 59.024 37.500 0.30 0.00 29.70 3.41
2174 4458 6.140110 GCGCACAAACTAAAATTCTTGTCTA 58.860 36.000 0.30 0.00 29.70 2.59
2175 4459 6.801862 GCGCACAAACTAAAATTCTTGTCTAT 59.198 34.615 0.30 0.00 29.70 1.98
2176 4460 7.326063 GCGCACAAACTAAAATTCTTGTCTATT 59.674 33.333 0.30 0.00 29.70 1.73
2177 4461 9.180678 CGCACAAACTAAAATTCTTGTCTATTT 57.819 29.630 0.00 0.00 29.70 1.40
2180 4464 9.893305 ACAAACTAAAATTCTTGTCTATTTCGG 57.107 29.630 0.00 0.00 0.00 4.30
2181 4465 9.893305 CAAACTAAAATTCTTGTCTATTTCGGT 57.107 29.630 0.00 0.00 0.00 4.69
2183 4467 8.842358 ACTAAAATTCTTGTCTATTTCGGTCA 57.158 30.769 0.00 0.00 0.00 4.02
2184 4468 9.280174 ACTAAAATTCTTGTCTATTTCGGTCAA 57.720 29.630 0.00 0.00 0.00 3.18
2187 4471 8.567285 AAATTCTTGTCTATTTCGGTCAATCT 57.433 30.769 0.00 0.00 0.00 2.40
2188 4472 7.778470 ATTCTTGTCTATTTCGGTCAATCTC 57.222 36.000 0.00 0.00 0.00 2.75
2189 4473 5.661458 TCTTGTCTATTTCGGTCAATCTCC 58.339 41.667 0.00 0.00 0.00 3.71
2190 4474 5.186992 TCTTGTCTATTTCGGTCAATCTCCA 59.813 40.000 0.00 0.00 0.00 3.86
2191 4475 4.755411 TGTCTATTTCGGTCAATCTCCAC 58.245 43.478 0.00 0.00 0.00 4.02
2192 4476 4.120589 GTCTATTTCGGTCAATCTCCACC 58.879 47.826 0.00 0.00 0.00 4.61
2193 4477 3.772572 TCTATTTCGGTCAATCTCCACCA 59.227 43.478 0.00 0.00 32.33 4.17
2194 4478 2.178912 TTTCGGTCAATCTCCACCAC 57.821 50.000 0.00 0.00 32.33 4.16
2195 4479 1.348064 TTCGGTCAATCTCCACCACT 58.652 50.000 0.00 0.00 32.33 4.00
2196 4480 0.895530 TCGGTCAATCTCCACCACTC 59.104 55.000 0.00 0.00 32.33 3.51
2197 4481 0.898320 CGGTCAATCTCCACCACTCT 59.102 55.000 0.00 0.00 32.33 3.24
2198 4482 1.276421 CGGTCAATCTCCACCACTCTT 59.724 52.381 0.00 0.00 32.33 2.85
2199 4483 2.496070 CGGTCAATCTCCACCACTCTTA 59.504 50.000 0.00 0.00 32.33 2.10
2200 4484 3.429547 CGGTCAATCTCCACCACTCTTAG 60.430 52.174 0.00 0.00 32.33 2.18
2201 4485 3.769844 GGTCAATCTCCACCACTCTTAGA 59.230 47.826 0.00 0.00 32.33 2.10
2202 4486 4.407296 GGTCAATCTCCACCACTCTTAGAT 59.593 45.833 0.00 0.00 32.33 1.98
2203 4487 5.452636 GGTCAATCTCCACCACTCTTAGATC 60.453 48.000 0.00 0.00 32.33 2.75
2204 4488 4.651503 TCAATCTCCACCACTCTTAGATCC 59.348 45.833 0.00 0.00 0.00 3.36
2205 4489 4.551215 ATCTCCACCACTCTTAGATCCT 57.449 45.455 0.00 0.00 0.00 3.24
2206 4490 3.904717 TCTCCACCACTCTTAGATCCTC 58.095 50.000 0.00 0.00 0.00 3.71
2207 4491 3.269643 TCTCCACCACTCTTAGATCCTCA 59.730 47.826 0.00 0.00 0.00 3.86
2208 4492 4.078922 TCTCCACCACTCTTAGATCCTCAT 60.079 45.833 0.00 0.00 0.00 2.90
2209 4493 3.963374 TCCACCACTCTTAGATCCTCATG 59.037 47.826 0.00 0.00 0.00 3.07
2210 4494 3.708631 CCACCACTCTTAGATCCTCATGT 59.291 47.826 0.00 0.00 0.00 3.21
2211 4495 4.202202 CCACCACTCTTAGATCCTCATGTC 60.202 50.000 0.00 0.00 0.00 3.06
2212 4496 4.403752 CACCACTCTTAGATCCTCATGTCA 59.596 45.833 0.00 0.00 0.00 3.58
2213 4497 5.070180 CACCACTCTTAGATCCTCATGTCAT 59.930 44.000 0.00 0.00 0.00 3.06
2214 4498 5.070180 ACCACTCTTAGATCCTCATGTCATG 59.930 44.000 6.47 6.47 0.00 3.07
2215 4499 5.511031 CCACTCTTAGATCCTCATGTCATGG 60.511 48.000 12.90 3.95 0.00 3.66
2216 4500 4.040217 ACTCTTAGATCCTCATGTCATGGC 59.960 45.833 12.90 0.00 0.00 4.40
2217 4501 3.326006 TCTTAGATCCTCATGTCATGGCC 59.674 47.826 12.90 0.00 0.00 5.36
2218 4502 0.395686 AGATCCTCATGTCATGGCCG 59.604 55.000 12.90 2.45 0.00 6.13
2219 4503 0.107456 GATCCTCATGTCATGGCCGT 59.893 55.000 12.90 0.00 0.00 5.68
2220 4504 0.548031 ATCCTCATGTCATGGCCGTT 59.452 50.000 12.90 0.00 0.00 4.44
2221 4505 0.107703 TCCTCATGTCATGGCCGTTC 60.108 55.000 12.90 0.00 0.00 3.95
2222 4506 0.107508 CCTCATGTCATGGCCGTTCT 60.108 55.000 12.90 0.00 0.00 3.01
2223 4507 1.679944 CCTCATGTCATGGCCGTTCTT 60.680 52.381 12.90 0.00 0.00 2.52
2224 4508 1.667724 CTCATGTCATGGCCGTTCTTC 59.332 52.381 12.90 0.00 0.00 2.87
2225 4509 1.278985 TCATGTCATGGCCGTTCTTCT 59.721 47.619 12.90 0.00 0.00 2.85
2226 4510 2.499693 TCATGTCATGGCCGTTCTTCTA 59.500 45.455 12.90 0.00 0.00 2.10
2227 4511 3.055458 TCATGTCATGGCCGTTCTTCTAA 60.055 43.478 12.90 0.00 0.00 2.10
2228 4512 3.627395 TGTCATGGCCGTTCTTCTAAT 57.373 42.857 0.00 0.00 0.00 1.73
2229 4513 3.950397 TGTCATGGCCGTTCTTCTAATT 58.050 40.909 0.00 0.00 0.00 1.40
2230 4514 4.331968 TGTCATGGCCGTTCTTCTAATTT 58.668 39.130 0.00 0.00 0.00 1.82
2231 4515 4.394920 TGTCATGGCCGTTCTTCTAATTTC 59.605 41.667 0.00 0.00 0.00 2.17
2232 4516 4.394920 GTCATGGCCGTTCTTCTAATTTCA 59.605 41.667 0.00 0.00 0.00 2.69
2233 4517 5.007034 TCATGGCCGTTCTTCTAATTTCAA 58.993 37.500 0.00 0.00 0.00 2.69
2234 4518 5.475220 TCATGGCCGTTCTTCTAATTTCAAA 59.525 36.000 0.00 0.00 0.00 2.69
2235 4519 5.776173 TGGCCGTTCTTCTAATTTCAAAA 57.224 34.783 0.00 0.00 0.00 2.44
2240 4524 7.010645 GGCCGTTCTTCTAATTTCAAAACAAAA 59.989 33.333 0.00 0.00 0.00 2.44
2246 4530 8.538856 TCTTCTAATTTCAAAACAAAACATGCG 58.461 29.630 0.00 0.00 0.00 4.73
2278 4563 8.954950 ATGATTGACTAATCTTAAGGTGACAG 57.045 34.615 1.85 0.00 42.56 3.51
2314 4599 4.056740 AGCAGCTCTGATACATGAATTCG 58.943 43.478 0.00 0.00 0.00 3.34
2316 4601 4.509230 GCAGCTCTGATACATGAATTCGAA 59.491 41.667 0.00 0.00 0.00 3.71
2327 4612 0.678048 GAATTCGAAGCTGGCACCCT 60.678 55.000 3.35 0.00 0.00 4.34
2334 4619 0.178953 AAGCTGGCACCCTGATTTGT 60.179 50.000 0.00 0.00 26.95 2.83
2339 4624 1.962807 TGGCACCCTGATTTGTCTTTG 59.037 47.619 0.00 0.00 0.00 2.77
2459 6239 2.618709 CTGGAGTCTCACCAAAAACACC 59.381 50.000 1.47 0.00 36.95 4.16
2474 6254 7.338957 ACCAAAAACACCAAATCATGACAATTT 59.661 29.630 0.00 0.00 0.00 1.82
2503 6283 5.053978 AGAGGTTCTTTTGATGGTCAAGT 57.946 39.130 0.00 0.00 37.70 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.593864 GGCGCTGGATCGGGAGAC 62.594 72.222 7.64 0.00 44.82 3.36
31 32 2.512515 CCTCTGTAAGCTGGCGGC 60.513 66.667 11.19 11.19 42.19 6.53
32 33 1.142748 CTCCTCTGTAAGCTGGCGG 59.857 63.158 0.00 0.00 0.00 6.13
34 35 0.179124 CGTCTCCTCTGTAAGCTGGC 60.179 60.000 0.00 0.00 0.00 4.85
35 36 1.135257 CACGTCTCCTCTGTAAGCTGG 60.135 57.143 0.00 0.00 0.00 4.85
36 37 1.734047 GCACGTCTCCTCTGTAAGCTG 60.734 57.143 0.00 0.00 0.00 4.24
37 38 0.528470 GCACGTCTCCTCTGTAAGCT 59.472 55.000 0.00 0.00 0.00 3.74
38 39 0.458716 GGCACGTCTCCTCTGTAAGC 60.459 60.000 0.00 0.00 0.00 3.09
39 40 0.173708 GGGCACGTCTCCTCTGTAAG 59.826 60.000 3.66 0.00 0.00 2.34
41 42 1.681327 GGGGCACGTCTCCTCTGTA 60.681 63.158 3.66 0.00 0.00 2.74
42 43 2.997897 GGGGCACGTCTCCTCTGT 60.998 66.667 3.66 0.00 0.00 3.41
43 44 2.997315 TGGGGCACGTCTCCTCTG 60.997 66.667 5.00 0.00 0.00 3.35
44 45 2.997897 GTGGGGCACGTCTCCTCT 60.998 66.667 5.00 0.00 0.00 3.69
57 58 3.917760 GAGGAGATCGGGCGTGGG 61.918 72.222 0.00 0.00 0.00 4.61
66 67 1.045911 AACAGGGGAGCGAGGAGATC 61.046 60.000 0.00 0.00 33.78 2.75
67 68 1.002274 AACAGGGGAGCGAGGAGAT 59.998 57.895 0.00 0.00 0.00 2.75
68 69 1.682684 GAACAGGGGAGCGAGGAGA 60.683 63.158 0.00 0.00 0.00 3.71
69 70 2.726351 GGAACAGGGGAGCGAGGAG 61.726 68.421 0.00 0.00 0.00 3.69
72 73 4.821589 GCGGAACAGGGGAGCGAG 62.822 72.222 0.00 0.00 0.00 5.03
111 112 3.984749 GAGGAGGAGATCGGCGGC 61.985 72.222 7.21 0.00 0.00 6.53
112 113 3.299190 GGAGGAGGAGATCGGCGG 61.299 72.222 7.21 0.00 0.00 6.13
113 114 3.665226 CGGAGGAGGAGATCGGCG 61.665 72.222 0.00 0.00 0.00 6.46
114 115 3.984749 GCGGAGGAGGAGATCGGC 61.985 72.222 0.00 0.00 35.12 5.54
115 116 3.665226 CGCGGAGGAGGAGATCGG 61.665 72.222 0.00 0.00 0.00 4.18
116 117 4.335584 GCGCGGAGGAGGAGATCG 62.336 72.222 8.83 0.00 0.00 3.69
117 118 3.984749 GGCGCGGAGGAGGAGATC 61.985 72.222 8.83 0.00 0.00 2.75
124 125 4.812476 CATGAACGGCGCGGAGGA 62.812 66.667 22.76 4.56 0.00 3.71
131 132 1.519455 GAGAGACCCATGAACGGCG 60.519 63.158 4.80 4.80 0.00 6.46
132 133 0.460987 CAGAGAGACCCATGAACGGC 60.461 60.000 0.00 0.00 0.00 5.68
133 134 0.898320 ACAGAGAGACCCATGAACGG 59.102 55.000 0.00 0.00 0.00 4.44
134 135 1.468224 CGACAGAGAGACCCATGAACG 60.468 57.143 0.00 0.00 0.00 3.95
135 136 1.134965 CCGACAGAGAGACCCATGAAC 60.135 57.143 0.00 0.00 0.00 3.18
137 138 0.331616 TCCGACAGAGAGACCCATGA 59.668 55.000 0.00 0.00 0.00 3.07
138 139 0.743688 CTCCGACAGAGAGACCCATG 59.256 60.000 0.00 0.00 46.50 3.66
141 142 1.755008 CCCTCCGACAGAGAGACCC 60.755 68.421 0.00 0.00 46.50 4.46
142 143 1.755008 CCCCTCCGACAGAGAGACC 60.755 68.421 0.00 0.00 46.50 3.85
144 145 1.506907 TTCCCCCTCCGACAGAGAGA 61.507 60.000 0.00 0.00 46.50 3.10
145 146 0.614979 TTTCCCCCTCCGACAGAGAG 60.615 60.000 0.00 0.00 46.50 3.20
146 147 0.042731 ATTTCCCCCTCCGACAGAGA 59.957 55.000 0.00 0.00 46.50 3.10
147 148 0.466124 GATTTCCCCCTCCGACAGAG 59.534 60.000 0.00 0.00 42.83 3.35
148 149 1.327690 CGATTTCCCCCTCCGACAGA 61.328 60.000 0.00 0.00 0.00 3.41
149 150 1.144057 CGATTTCCCCCTCCGACAG 59.856 63.158 0.00 0.00 0.00 3.51
150 151 3.026431 GCGATTTCCCCCTCCGACA 62.026 63.158 0.00 0.00 0.00 4.35
151 152 2.203029 GCGATTTCCCCCTCCGAC 60.203 66.667 0.00 0.00 0.00 4.79
152 153 2.365105 AGCGATTTCCCCCTCCGA 60.365 61.111 0.00 0.00 0.00 4.55
154 155 0.183731 AATGAGCGATTTCCCCCTCC 59.816 55.000 0.00 0.00 0.00 4.30
155 156 1.598882 GAATGAGCGATTTCCCCCTC 58.401 55.000 0.00 0.00 0.00 4.30
156 157 0.183731 GGAATGAGCGATTTCCCCCT 59.816 55.000 0.00 0.00 36.24 4.79
157 158 0.106719 TGGAATGAGCGATTTCCCCC 60.107 55.000 1.86 0.00 40.61 5.40
158 159 1.312815 CTGGAATGAGCGATTTCCCC 58.687 55.000 1.86 0.00 40.61 4.81
159 160 2.044123 ACTGGAATGAGCGATTTCCC 57.956 50.000 1.86 0.00 40.61 3.97
160 161 3.134458 CCTACTGGAATGAGCGATTTCC 58.866 50.000 0.00 0.00 41.51 3.13
161 162 4.060038 TCCTACTGGAATGAGCGATTTC 57.940 45.455 0.00 0.00 39.87 2.17
162 163 4.487714 TTCCTACTGGAATGAGCGATTT 57.512 40.909 0.00 0.00 46.57 2.17
170 171 7.680366 GCTGGAGCTATTTTCCTACTGGAATG 61.680 46.154 0.00 0.00 43.77 2.67
171 172 5.688766 GCTGGAGCTATTTTCCTACTGGAAT 60.689 44.000 0.00 0.00 43.77 3.01
172 173 4.384208 GCTGGAGCTATTTTCCTACTGGAA 60.384 45.833 0.00 0.00 43.20 3.53
173 174 3.134804 GCTGGAGCTATTTTCCTACTGGA 59.865 47.826 0.00 0.00 38.18 3.86
174 175 3.471680 GCTGGAGCTATTTTCCTACTGG 58.528 50.000 0.00 0.00 38.21 4.00
188 189 1.376553 GAGTGTTGGGAGCTGGAGC 60.377 63.158 0.00 0.00 42.49 4.70
189 190 0.248843 GAGAGTGTTGGGAGCTGGAG 59.751 60.000 0.00 0.00 0.00 3.86
191 192 0.321122 GTGAGAGTGTTGGGAGCTGG 60.321 60.000 0.00 0.00 0.00 4.85
192 193 0.683973 AGTGAGAGTGTTGGGAGCTG 59.316 55.000 0.00 0.00 0.00 4.24
193 194 0.683973 CAGTGAGAGTGTTGGGAGCT 59.316 55.000 0.00 0.00 0.00 4.09
194 195 0.952984 GCAGTGAGAGTGTTGGGAGC 60.953 60.000 0.00 0.00 0.00 4.70
197 198 1.669115 CGGCAGTGAGAGTGTTGGG 60.669 63.158 0.00 0.00 0.00 4.12
198 199 2.320587 GCGGCAGTGAGAGTGTTGG 61.321 63.158 0.00 0.00 0.00 3.77
199 200 1.595109 TGCGGCAGTGAGAGTGTTG 60.595 57.895 0.00 0.00 0.00 3.33
201 202 2.029666 GTGCGGCAGTGAGAGTGT 59.970 61.111 1.18 0.00 0.00 3.55
203 204 2.029666 GTGTGCGGCAGTGAGAGT 59.970 61.111 1.18 0.00 0.00 3.24
205 206 2.029518 CTGTGTGCGGCAGTGAGA 59.970 61.111 1.18 0.00 0.00 3.27
232 233 0.748367 GGAATGGAACGGAAGGAGCC 60.748 60.000 0.00 0.00 0.00 4.70
233 234 1.090052 CGGAATGGAACGGAAGGAGC 61.090 60.000 0.00 0.00 0.00 4.70
236 237 0.249398 AGACGGAATGGAACGGAAGG 59.751 55.000 0.00 0.00 0.00 3.46
237 238 1.641577 GAGACGGAATGGAACGGAAG 58.358 55.000 0.00 0.00 0.00 3.46
238 239 0.108992 CGAGACGGAATGGAACGGAA 60.109 55.000 0.00 0.00 0.00 4.30
239 240 1.509463 CGAGACGGAATGGAACGGA 59.491 57.895 0.00 0.00 0.00 4.69
240 241 2.165301 GCGAGACGGAATGGAACGG 61.165 63.158 0.00 0.00 0.00 4.44
241 242 2.165301 GGCGAGACGGAATGGAACG 61.165 63.158 0.00 0.00 0.00 3.95
243 244 2.238847 CTGGGCGAGACGGAATGGAA 62.239 60.000 0.00 0.00 0.00 3.53
244 245 2.682136 TGGGCGAGACGGAATGGA 60.682 61.111 0.00 0.00 0.00 3.41
245 246 2.202932 CTGGGCGAGACGGAATGG 60.203 66.667 0.00 0.00 0.00 3.16
246 247 2.202932 CCTGGGCGAGACGGAATG 60.203 66.667 0.00 0.00 0.00 2.67
247 248 3.470888 CCCTGGGCGAGACGGAAT 61.471 66.667 0.00 0.00 0.00 3.01
251 252 4.452733 GAACCCCTGGGCGAGACG 62.453 72.222 7.39 0.00 39.32 4.18
252 253 4.097361 GGAACCCCTGGGCGAGAC 62.097 72.222 7.39 0.00 39.32 3.36
292 293 3.506398 TGGATATGGATTAGAGTGGCGA 58.494 45.455 0.00 0.00 0.00 5.54
294 295 4.946157 CCAATGGATATGGATTAGAGTGGC 59.054 45.833 0.00 0.00 40.56 5.01
368 2480 0.105246 AGGAAGATCTCGGCCAGGAT 60.105 55.000 2.24 5.21 0.00 3.24
835 3009 4.135153 AGTAGCCGCAGCGTCCTG 62.135 66.667 15.05 0.00 46.67 3.86
840 3014 1.875813 CTCTTCAGTAGCCGCAGCG 60.876 63.158 8.18 8.18 46.67 5.18
841 3015 0.804156 GTCTCTTCAGTAGCCGCAGC 60.804 60.000 0.00 0.00 40.32 5.25
842 3016 0.814457 AGTCTCTTCAGTAGCCGCAG 59.186 55.000 0.00 0.00 0.00 5.18
843 3017 1.202582 GAAGTCTCTTCAGTAGCCGCA 59.797 52.381 4.85 0.00 0.00 5.69
844 3018 1.202582 TGAAGTCTCTTCAGTAGCCGC 59.797 52.381 7.92 0.00 0.00 6.53
845 3019 3.791973 ATGAAGTCTCTTCAGTAGCCG 57.208 47.619 15.59 0.00 0.00 5.52
846 3020 5.078411 TGAATGAAGTCTCTTCAGTAGCC 57.922 43.478 15.59 4.86 0.00 3.93
847 3021 5.108517 CCTGAATGAAGTCTCTTCAGTAGC 58.891 45.833 15.59 5.42 42.69 3.58
848 3022 5.186797 ACCCTGAATGAAGTCTCTTCAGTAG 59.813 44.000 15.59 12.71 42.69 2.57
849 3023 5.047021 CACCCTGAATGAAGTCTCTTCAGTA 60.047 44.000 15.59 5.92 42.69 2.74
850 3024 3.906846 ACCCTGAATGAAGTCTCTTCAGT 59.093 43.478 15.59 13.54 42.69 3.41
851 3025 4.020751 TCACCCTGAATGAAGTCTCTTCAG 60.021 45.833 15.59 9.36 43.46 3.02
852 3026 3.903714 TCACCCTGAATGAAGTCTCTTCA 59.096 43.478 13.34 13.34 0.00 3.02
987 3193 0.247736 GTGACATCTTGGCCGAGTCT 59.752 55.000 19.96 5.97 0.00 3.24
1126 3345 1.305046 CTCCCGGTGGTAGGTCAGT 60.305 63.158 0.00 0.00 0.00 3.41
1264 3495 3.385384 CTGGCTGGGACTCTCGCA 61.385 66.667 0.00 0.00 36.96 5.10
1336 3575 3.388024 AGCAAACACCTCTCTGTTACAGA 59.612 43.478 14.77 14.77 38.25 3.41
1415 3657 7.528996 AATGTCTTGATGTCCATTGAGAAAA 57.471 32.000 0.00 0.00 0.00 2.29
1441 3683 2.439507 TGAGACAAAGCCTCTGAACCTT 59.560 45.455 0.00 0.00 0.00 3.50
1444 3686 3.627577 TGTTTGAGACAAAGCCTCTGAAC 59.372 43.478 0.00 0.00 34.69 3.18
1459 3701 4.835199 GCATAAGCTTGCATTGTTTGAG 57.165 40.909 9.86 0.00 42.31 3.02
1528 3770 2.571653 AGAACGATGATGGGAAGTTGGA 59.428 45.455 0.00 0.00 0.00 3.53
1540 3782 0.684535 TGTGGAGGCAAGAACGATGA 59.315 50.000 0.00 0.00 0.00 2.92
1548 3790 4.944619 TCATACTATCTGTGGAGGCAAG 57.055 45.455 0.00 0.00 0.00 4.01
1584 3826 7.716799 AGGAGATAAACATGGTGCAATAAAA 57.283 32.000 0.00 0.00 0.00 1.52
1585 3827 7.147915 GGAAGGAGATAAACATGGTGCAATAAA 60.148 37.037 0.00 0.00 0.00 1.40
1586 3828 6.321181 GGAAGGAGATAAACATGGTGCAATAA 59.679 38.462 0.00 0.00 0.00 1.40
1631 3882 9.409312 CATAAAAACATTCAAGCATTAGACACA 57.591 29.630 0.00 0.00 0.00 3.72
1654 3907 7.838884 TCCAAACAAGAATGATCAATTGCATA 58.161 30.769 14.97 0.00 0.00 3.14
1655 3908 6.703319 TCCAAACAAGAATGATCAATTGCAT 58.297 32.000 14.97 0.00 0.00 3.96
1729 3988 3.576078 AATCAGGATTATGTTCCCGCA 57.424 42.857 0.00 0.00 36.35 5.69
1730 3989 6.016276 ACAATAAATCAGGATTATGTTCCCGC 60.016 38.462 0.00 0.00 36.35 6.13
1732 3991 9.533253 CAAACAATAAATCAGGATTATGTTCCC 57.467 33.333 15.18 0.00 36.35 3.97
1799 4070 9.844790 CTCATAGTGTGCAAGATTTTATTTTCA 57.155 29.630 0.00 0.00 0.00 2.69
1805 4077 9.890629 AAGATACTCATAGTGTGCAAGATTTTA 57.109 29.630 0.00 0.00 0.00 1.52
1893 4173 7.824289 TCTTCTATGTTACCTTGACCATCAAAG 59.176 37.037 0.00 0.00 35.73 2.77
1919 4199 8.098912 AGGTAAACCGAATCTACACTTGTATTT 58.901 33.333 0.00 0.00 42.08 1.40
1935 4215 3.816523 GTGAACAATCCAAGGTAAACCGA 59.183 43.478 0.00 0.00 42.08 4.69
1937 4217 3.892588 TGGTGAACAATCCAAGGTAAACC 59.107 43.478 0.00 0.00 0.00 3.27
2018 4302 8.641541 TGAAGATGGCTAAAAAGAAAACATTCT 58.358 29.630 0.00 0.00 0.00 2.40
2019 4303 8.703336 GTGAAGATGGCTAAAAAGAAAACATTC 58.297 33.333 0.00 0.00 0.00 2.67
2020 4304 8.203485 TGTGAAGATGGCTAAAAAGAAAACATT 58.797 29.630 0.00 0.00 0.00 2.71
2021 4305 7.725251 TGTGAAGATGGCTAAAAAGAAAACAT 58.275 30.769 0.00 0.00 0.00 2.71
2022 4306 7.106439 TGTGAAGATGGCTAAAAAGAAAACA 57.894 32.000 0.00 0.00 0.00 2.83
2023 4307 7.653311 ACATGTGAAGATGGCTAAAAAGAAAAC 59.347 33.333 0.00 0.00 0.00 2.43
2025 4309 7.288810 ACATGTGAAGATGGCTAAAAAGAAA 57.711 32.000 0.00 0.00 0.00 2.52
2026 4310 6.899393 ACATGTGAAGATGGCTAAAAAGAA 57.101 33.333 0.00 0.00 0.00 2.52
2027 4311 9.679661 TTATACATGTGAAGATGGCTAAAAAGA 57.320 29.630 9.11 0.00 0.00 2.52
2032 4316 9.625747 TGAAATTATACATGTGAAGATGGCTAA 57.374 29.630 9.11 0.00 0.00 3.09
2033 4317 9.056005 GTGAAATTATACATGTGAAGATGGCTA 57.944 33.333 9.11 0.00 0.00 3.93
2034 4318 7.013655 GGTGAAATTATACATGTGAAGATGGCT 59.986 37.037 9.11 0.00 0.00 4.75
2035 4319 7.013655 AGGTGAAATTATACATGTGAAGATGGC 59.986 37.037 9.11 0.00 0.00 4.40
2036 4320 8.455903 AGGTGAAATTATACATGTGAAGATGG 57.544 34.615 9.11 0.00 0.00 3.51
2037 4321 8.562892 GGAGGTGAAATTATACATGTGAAGATG 58.437 37.037 9.11 0.00 0.00 2.90
2038 4322 8.497745 AGGAGGTGAAATTATACATGTGAAGAT 58.502 33.333 9.11 0.00 0.00 2.40
2039 4323 7.861629 AGGAGGTGAAATTATACATGTGAAGA 58.138 34.615 9.11 0.00 0.00 2.87
2040 4324 9.613428 TTAGGAGGTGAAATTATACATGTGAAG 57.387 33.333 9.11 0.00 0.00 3.02
2042 4326 9.559732 CATTAGGAGGTGAAATTATACATGTGA 57.440 33.333 9.11 0.00 0.00 3.58
2043 4327 9.342308 ACATTAGGAGGTGAAATTATACATGTG 57.658 33.333 9.11 0.00 0.00 3.21
2044 4328 9.920946 AACATTAGGAGGTGAAATTATACATGT 57.079 29.630 2.69 2.69 0.00 3.21
2052 4336 9.753674 TTCAGAATAACATTAGGAGGTGAAATT 57.246 29.630 0.00 0.00 0.00 1.82
2053 4337 9.753674 TTTCAGAATAACATTAGGAGGTGAAAT 57.246 29.630 0.00 0.00 0.00 2.17
2054 4338 9.753674 ATTTCAGAATAACATTAGGAGGTGAAA 57.246 29.630 0.00 0.00 35.37 2.69
2078 4362 9.845740 TGTGACTACCAGTTATGCATATTTATT 57.154 29.630 7.36 0.00 0.00 1.40
2079 4363 9.845740 TTGTGACTACCAGTTATGCATATTTAT 57.154 29.630 7.36 0.00 0.00 1.40
2080 4364 9.674068 TTTGTGACTACCAGTTATGCATATTTA 57.326 29.630 7.36 0.00 0.00 1.40
2081 4365 8.458843 GTTTGTGACTACCAGTTATGCATATTT 58.541 33.333 7.36 0.00 0.00 1.40
2082 4366 7.609918 TGTTTGTGACTACCAGTTATGCATATT 59.390 33.333 7.36 0.00 0.00 1.28
2083 4367 7.109501 TGTTTGTGACTACCAGTTATGCATAT 58.890 34.615 7.36 0.00 0.00 1.78
2084 4368 6.468543 TGTTTGTGACTACCAGTTATGCATA 58.531 36.000 1.16 1.16 0.00 3.14
2085 4369 5.312895 TGTTTGTGACTACCAGTTATGCAT 58.687 37.500 3.79 3.79 0.00 3.96
2086 4370 4.709250 TGTTTGTGACTACCAGTTATGCA 58.291 39.130 0.00 0.00 0.00 3.96
2087 4371 5.682943 TTGTTTGTGACTACCAGTTATGC 57.317 39.130 0.00 0.00 0.00 3.14
2088 4372 7.807907 GGATTTTGTTTGTGACTACCAGTTATG 59.192 37.037 0.00 0.00 0.00 1.90
2089 4373 7.039993 GGGATTTTGTTTGTGACTACCAGTTAT 60.040 37.037 0.00 0.00 0.00 1.89
2090 4374 6.263617 GGGATTTTGTTTGTGACTACCAGTTA 59.736 38.462 0.00 0.00 0.00 2.24
2091 4375 5.068591 GGGATTTTGTTTGTGACTACCAGTT 59.931 40.000 0.00 0.00 0.00 3.16
2092 4376 4.583073 GGGATTTTGTTTGTGACTACCAGT 59.417 41.667 0.00 0.00 0.00 4.00
2093 4377 4.320202 CGGGATTTTGTTTGTGACTACCAG 60.320 45.833 0.00 0.00 0.00 4.00
2094 4378 3.566322 CGGGATTTTGTTTGTGACTACCA 59.434 43.478 0.00 0.00 0.00 3.25
2095 4379 3.816523 TCGGGATTTTGTTTGTGACTACC 59.183 43.478 0.00 0.00 0.00 3.18
2096 4380 4.514066 ACTCGGGATTTTGTTTGTGACTAC 59.486 41.667 0.00 0.00 0.00 2.73
2097 4381 4.710324 ACTCGGGATTTTGTTTGTGACTA 58.290 39.130 0.00 0.00 0.00 2.59
2098 4382 3.551846 ACTCGGGATTTTGTTTGTGACT 58.448 40.909 0.00 0.00 0.00 3.41
2099 4383 3.314080 TGACTCGGGATTTTGTTTGTGAC 59.686 43.478 0.00 0.00 0.00 3.67
2100 4384 3.314080 GTGACTCGGGATTTTGTTTGTGA 59.686 43.478 0.00 0.00 0.00 3.58
2101 4385 3.315191 AGTGACTCGGGATTTTGTTTGTG 59.685 43.478 0.00 0.00 0.00 3.33
2102 4386 3.315191 CAGTGACTCGGGATTTTGTTTGT 59.685 43.478 0.00 0.00 0.00 2.83
2103 4387 3.853307 GCAGTGACTCGGGATTTTGTTTG 60.853 47.826 0.00 0.00 0.00 2.93
2104 4388 2.293399 GCAGTGACTCGGGATTTTGTTT 59.707 45.455 0.00 0.00 0.00 2.83
2105 4389 1.880027 GCAGTGACTCGGGATTTTGTT 59.120 47.619 0.00 0.00 0.00 2.83
2106 4390 1.072331 AGCAGTGACTCGGGATTTTGT 59.928 47.619 0.00 0.00 0.00 2.83
2107 4391 1.734465 GAGCAGTGACTCGGGATTTTG 59.266 52.381 0.00 0.00 0.00 2.44
2108 4392 1.625818 AGAGCAGTGACTCGGGATTTT 59.374 47.619 0.00 0.00 41.77 1.82
2109 4393 1.270907 AGAGCAGTGACTCGGGATTT 58.729 50.000 0.00 0.00 41.77 2.17
2110 4394 2.145397 TAGAGCAGTGACTCGGGATT 57.855 50.000 0.00 0.00 41.77 3.01
2111 4395 2.373335 ATAGAGCAGTGACTCGGGAT 57.627 50.000 0.00 0.00 41.77 3.85
2112 4396 3.510531 ATATAGAGCAGTGACTCGGGA 57.489 47.619 0.00 0.00 41.77 5.14
2113 4397 5.707242 TTTATATAGAGCAGTGACTCGGG 57.293 43.478 0.00 0.00 41.77 5.14
2114 4398 6.978659 TGTTTTTATATAGAGCAGTGACTCGG 59.021 38.462 0.00 0.00 41.77 4.63
2115 4399 7.306283 GCTGTTTTTATATAGAGCAGTGACTCG 60.306 40.741 0.00 0.00 41.77 4.18
2116 4400 7.708752 AGCTGTTTTTATATAGAGCAGTGACTC 59.291 37.037 0.00 0.00 36.91 3.36
2117 4401 7.560368 AGCTGTTTTTATATAGAGCAGTGACT 58.440 34.615 0.00 0.00 0.00 3.41
2118 4402 7.778470 AGCTGTTTTTATATAGAGCAGTGAC 57.222 36.000 0.00 0.00 0.00 3.67
2119 4403 7.824289 ACAAGCTGTTTTTATATAGAGCAGTGA 59.176 33.333 0.00 0.00 0.00 3.41
2120 4404 7.978982 ACAAGCTGTTTTTATATAGAGCAGTG 58.021 34.615 11.16 0.00 0.00 3.66
2121 4405 7.824289 TGACAAGCTGTTTTTATATAGAGCAGT 59.176 33.333 11.16 0.00 0.00 4.40
2122 4406 8.201554 TGACAAGCTGTTTTTATATAGAGCAG 57.798 34.615 0.00 7.33 0.00 4.24
2123 4407 7.824289 ACTGACAAGCTGTTTTTATATAGAGCA 59.176 33.333 0.00 0.00 0.00 4.26
2124 4408 8.119226 CACTGACAAGCTGTTTTTATATAGAGC 58.881 37.037 0.00 0.00 0.00 4.09
2125 4409 8.119226 GCACTGACAAGCTGTTTTTATATAGAG 58.881 37.037 0.00 0.00 0.00 2.43
2126 4410 7.201522 CGCACTGACAAGCTGTTTTTATATAGA 60.202 37.037 0.00 0.00 0.00 1.98
2127 4411 6.901887 CGCACTGACAAGCTGTTTTTATATAG 59.098 38.462 0.00 0.00 0.00 1.31
2128 4412 6.674519 GCGCACTGACAAGCTGTTTTTATATA 60.675 38.462 0.30 0.00 0.00 0.86
2129 4413 5.631026 CGCACTGACAAGCTGTTTTTATAT 58.369 37.500 0.00 0.00 0.00 0.86
2130 4414 4.612712 GCGCACTGACAAGCTGTTTTTATA 60.613 41.667 0.30 0.00 0.00 0.98
2131 4415 3.853307 GCGCACTGACAAGCTGTTTTTAT 60.853 43.478 0.30 0.00 0.00 1.40
2132 4416 2.540769 GCGCACTGACAAGCTGTTTTTA 60.541 45.455 0.30 0.00 0.00 1.52
2133 4417 1.798813 GCGCACTGACAAGCTGTTTTT 60.799 47.619 0.30 0.00 0.00 1.94
2134 4418 0.248621 GCGCACTGACAAGCTGTTTT 60.249 50.000 0.30 0.00 0.00 2.43
2135 4419 1.356624 GCGCACTGACAAGCTGTTT 59.643 52.632 0.30 0.00 0.00 2.83
2136 4420 1.819208 TGCGCACTGACAAGCTGTT 60.819 52.632 5.66 0.00 0.00 3.16
2137 4421 2.203056 TGCGCACTGACAAGCTGT 60.203 55.556 5.66 0.00 0.00 4.40
2138 4422 2.050639 TTGTGCGCACTGACAAGCTG 62.051 55.000 37.59 0.00 0.00 4.24
2139 4423 1.375853 TTTGTGCGCACTGACAAGCT 61.376 50.000 37.59 0.00 33.73 3.74
2140 4424 1.063972 TTTGTGCGCACTGACAAGC 59.936 52.632 37.59 12.69 33.73 4.01
2141 4425 0.378257 AGTTTGTGCGCACTGACAAG 59.622 50.000 37.59 0.00 33.73 3.16
2142 4426 1.657822 TAGTTTGTGCGCACTGACAA 58.342 45.000 37.59 22.81 0.00 3.18
2143 4427 1.657822 TTAGTTTGTGCGCACTGACA 58.342 45.000 37.59 18.07 0.00 3.58
2144 4428 2.748461 TTTAGTTTGTGCGCACTGAC 57.252 45.000 37.59 32.06 0.00 3.51
2145 4429 3.980646 ATTTTAGTTTGTGCGCACTGA 57.019 38.095 37.59 24.73 0.00 3.41
2146 4430 4.290155 AGAATTTTAGTTTGTGCGCACTG 58.710 39.130 37.59 0.00 0.00 3.66
2147 4431 4.568152 AGAATTTTAGTTTGTGCGCACT 57.432 36.364 37.59 22.18 0.00 4.40
2148 4432 4.502645 ACAAGAATTTTAGTTTGTGCGCAC 59.497 37.500 33.11 33.11 32.90 5.34
2149 4433 4.677584 ACAAGAATTTTAGTTTGTGCGCA 58.322 34.783 5.66 5.66 32.90 6.09
2150 4434 4.976116 AGACAAGAATTTTAGTTTGTGCGC 59.024 37.500 0.00 0.00 34.18 6.09
2151 4435 8.728088 AATAGACAAGAATTTTAGTTTGTGCG 57.272 30.769 0.00 0.00 34.18 5.34
2154 4438 9.893305 CCGAAATAGACAAGAATTTTAGTTTGT 57.107 29.630 0.00 0.00 36.54 2.83
2155 4439 9.893305 ACCGAAATAGACAAGAATTTTAGTTTG 57.107 29.630 0.00 0.00 0.00 2.93
2157 4441 9.280174 TGACCGAAATAGACAAGAATTTTAGTT 57.720 29.630 0.00 0.00 0.00 2.24
2158 4442 8.842358 TGACCGAAATAGACAAGAATTTTAGT 57.158 30.769 0.00 0.00 0.00 2.24
2161 4445 9.014297 AGATTGACCGAAATAGACAAGAATTTT 57.986 29.630 0.00 0.00 0.00 1.82
2162 4446 8.567285 AGATTGACCGAAATAGACAAGAATTT 57.433 30.769 0.00 0.00 0.00 1.82
2163 4447 7.281100 GGAGATTGACCGAAATAGACAAGAATT 59.719 37.037 0.00 0.00 0.00 2.17
2164 4448 6.763610 GGAGATTGACCGAAATAGACAAGAAT 59.236 38.462 0.00 0.00 0.00 2.40
2165 4449 6.106673 GGAGATTGACCGAAATAGACAAGAA 58.893 40.000 0.00 0.00 0.00 2.52
2166 4450 5.186992 TGGAGATTGACCGAAATAGACAAGA 59.813 40.000 0.00 0.00 0.00 3.02
2167 4451 5.292101 GTGGAGATTGACCGAAATAGACAAG 59.708 44.000 0.00 0.00 0.00 3.16
2168 4452 5.175859 GTGGAGATTGACCGAAATAGACAA 58.824 41.667 0.00 0.00 0.00 3.18
2169 4453 4.382685 GGTGGAGATTGACCGAAATAGACA 60.383 45.833 0.00 0.00 0.00 3.41
2170 4454 4.120589 GGTGGAGATTGACCGAAATAGAC 58.879 47.826 0.00 0.00 0.00 2.59
2171 4455 3.772572 TGGTGGAGATTGACCGAAATAGA 59.227 43.478 0.00 0.00 34.69 1.98
2172 4456 3.871594 GTGGTGGAGATTGACCGAAATAG 59.128 47.826 0.00 0.00 34.69 1.73
2173 4457 3.517901 AGTGGTGGAGATTGACCGAAATA 59.482 43.478 0.00 0.00 34.69 1.40
2174 4458 2.305927 AGTGGTGGAGATTGACCGAAAT 59.694 45.455 0.00 0.00 34.69 2.17
2175 4459 1.697432 AGTGGTGGAGATTGACCGAAA 59.303 47.619 0.00 0.00 34.69 3.46
2176 4460 1.275291 GAGTGGTGGAGATTGACCGAA 59.725 52.381 0.00 0.00 34.69 4.30
2177 4461 0.895530 GAGTGGTGGAGATTGACCGA 59.104 55.000 0.00 0.00 34.69 4.69
2178 4462 0.898320 AGAGTGGTGGAGATTGACCG 59.102 55.000 0.00 0.00 34.69 4.79
2179 4463 3.769844 TCTAAGAGTGGTGGAGATTGACC 59.230 47.826 0.00 0.00 0.00 4.02
2180 4464 5.452636 GGATCTAAGAGTGGTGGAGATTGAC 60.453 48.000 0.00 0.00 0.00 3.18
2181 4465 4.651503 GGATCTAAGAGTGGTGGAGATTGA 59.348 45.833 0.00 0.00 0.00 2.57
2182 4466 4.653341 AGGATCTAAGAGTGGTGGAGATTG 59.347 45.833 0.00 0.00 0.00 2.67
2183 4467 4.889780 AGGATCTAAGAGTGGTGGAGATT 58.110 43.478 0.00 0.00 0.00 2.40
2184 4468 4.078922 TGAGGATCTAAGAGTGGTGGAGAT 60.079 45.833 0.00 0.00 34.92 2.75
2185 4469 3.269643 TGAGGATCTAAGAGTGGTGGAGA 59.730 47.826 0.00 0.00 34.92 3.71
2186 4470 3.636679 TGAGGATCTAAGAGTGGTGGAG 58.363 50.000 0.00 0.00 34.92 3.86
2187 4471 3.757947 TGAGGATCTAAGAGTGGTGGA 57.242 47.619 0.00 0.00 34.92 4.02
2188 4472 3.708631 ACATGAGGATCTAAGAGTGGTGG 59.291 47.826 0.00 0.00 34.92 4.61
2189 4473 4.403752 TGACATGAGGATCTAAGAGTGGTG 59.596 45.833 0.00 0.00 34.92 4.17
2190 4474 4.614475 TGACATGAGGATCTAAGAGTGGT 58.386 43.478 0.00 0.00 34.92 4.16
2191 4475 5.511031 CCATGACATGAGGATCTAAGAGTGG 60.511 48.000 17.24 0.00 34.92 4.00
2192 4476 5.539979 CCATGACATGAGGATCTAAGAGTG 58.460 45.833 17.24 0.00 34.92 3.51
2193 4477 4.040217 GCCATGACATGAGGATCTAAGAGT 59.960 45.833 17.24 0.00 34.92 3.24
2194 4478 4.563168 GGCCATGACATGAGGATCTAAGAG 60.563 50.000 17.24 0.00 34.92 2.85
2195 4479 3.326006 GGCCATGACATGAGGATCTAAGA 59.674 47.826 17.24 0.00 34.92 2.10
2196 4480 3.672808 GGCCATGACATGAGGATCTAAG 58.327 50.000 17.24 0.00 34.92 2.18
2197 4481 2.037641 CGGCCATGACATGAGGATCTAA 59.962 50.000 17.24 0.00 34.92 2.10
2198 4482 1.620323 CGGCCATGACATGAGGATCTA 59.380 52.381 17.24 0.00 34.92 1.98
2199 4483 0.395686 CGGCCATGACATGAGGATCT 59.604 55.000 17.24 0.00 34.92 2.75
2200 4484 0.107456 ACGGCCATGACATGAGGATC 59.893 55.000 17.24 0.88 0.00 3.36
2201 4485 0.548031 AACGGCCATGACATGAGGAT 59.452 50.000 17.24 0.00 0.00 3.24
2202 4486 0.107703 GAACGGCCATGACATGAGGA 60.108 55.000 17.24 0.00 0.00 3.71
2203 4487 0.107508 AGAACGGCCATGACATGAGG 60.108 55.000 17.24 7.74 0.00 3.86
2204 4488 1.667724 GAAGAACGGCCATGACATGAG 59.332 52.381 17.24 9.94 0.00 2.90
2205 4489 1.278985 AGAAGAACGGCCATGACATGA 59.721 47.619 17.24 0.00 0.00 3.07
2206 4490 1.742761 AGAAGAACGGCCATGACATG 58.257 50.000 8.56 8.56 0.00 3.21
2207 4491 3.627395 TTAGAAGAACGGCCATGACAT 57.373 42.857 2.24 0.00 0.00 3.06
2208 4492 3.627395 ATTAGAAGAACGGCCATGACA 57.373 42.857 2.24 0.00 0.00 3.58
2209 4493 4.394920 TGAAATTAGAAGAACGGCCATGAC 59.605 41.667 2.24 0.00 0.00 3.06
2210 4494 4.584874 TGAAATTAGAAGAACGGCCATGA 58.415 39.130 2.24 0.00 0.00 3.07
2211 4495 4.963276 TGAAATTAGAAGAACGGCCATG 57.037 40.909 2.24 0.00 0.00 3.66
2212 4496 5.975693 TTTGAAATTAGAAGAACGGCCAT 57.024 34.783 2.24 0.00 0.00 4.40
2213 4497 5.067936 TGTTTTGAAATTAGAAGAACGGCCA 59.932 36.000 2.24 0.00 0.00 5.36
2214 4498 5.525199 TGTTTTGAAATTAGAAGAACGGCC 58.475 37.500 0.00 0.00 0.00 6.13
2215 4499 7.458038 TTTGTTTTGAAATTAGAAGAACGGC 57.542 32.000 0.00 0.00 0.00 5.68
2216 4500 8.865001 TGTTTTGTTTTGAAATTAGAAGAACGG 58.135 29.630 0.00 0.00 0.00 4.44
2220 4504 8.538856 CGCATGTTTTGTTTTGAAATTAGAAGA 58.461 29.630 0.00 0.00 0.00 2.87
2221 4505 8.538856 TCGCATGTTTTGTTTTGAAATTAGAAG 58.461 29.630 0.00 0.00 0.00 2.85
2222 4506 8.412608 TCGCATGTTTTGTTTTGAAATTAGAA 57.587 26.923 0.00 0.00 0.00 2.10
2223 4507 7.704472 ACTCGCATGTTTTGTTTTGAAATTAGA 59.296 29.630 0.00 0.00 0.00 2.10
2224 4508 7.788846 CACTCGCATGTTTTGTTTTGAAATTAG 59.211 33.333 0.00 0.00 0.00 1.73
2225 4509 7.489435 TCACTCGCATGTTTTGTTTTGAAATTA 59.511 29.630 0.00 0.00 0.00 1.40
2226 4510 6.312426 TCACTCGCATGTTTTGTTTTGAAATT 59.688 30.769 0.00 0.00 0.00 1.82
2227 4511 5.809562 TCACTCGCATGTTTTGTTTTGAAAT 59.190 32.000 0.00 0.00 0.00 2.17
2228 4512 5.164233 TCACTCGCATGTTTTGTTTTGAAA 58.836 33.333 0.00 0.00 0.00 2.69
2229 4513 4.738124 TCACTCGCATGTTTTGTTTTGAA 58.262 34.783 0.00 0.00 0.00 2.69
2230 4514 4.095632 TCTCACTCGCATGTTTTGTTTTGA 59.904 37.500 0.00 0.00 0.00 2.69
2231 4515 4.350346 TCTCACTCGCATGTTTTGTTTTG 58.650 39.130 0.00 0.00 0.00 2.44
2232 4516 4.630894 TCTCACTCGCATGTTTTGTTTT 57.369 36.364 0.00 0.00 0.00 2.43
2233 4517 4.275689 TCATCTCACTCGCATGTTTTGTTT 59.724 37.500 0.00 0.00 0.00 2.83
2234 4518 3.814842 TCATCTCACTCGCATGTTTTGTT 59.185 39.130 0.00 0.00 0.00 2.83
2235 4519 3.402110 TCATCTCACTCGCATGTTTTGT 58.598 40.909 0.00 0.00 0.00 2.83
2240 4524 3.118847 AGTCAATCATCTCACTCGCATGT 60.119 43.478 0.00 0.00 0.00 3.21
2245 4529 9.179552 CTTAAGATTAGTCAATCATCTCACTCG 57.820 37.037 0.00 0.00 42.66 4.18
2246 4530 9.474920 CCTTAAGATTAGTCAATCATCTCACTC 57.525 37.037 3.36 0.00 42.66 3.51
2278 4563 2.675348 GAGCTGCTAATTCACAGTCACC 59.325 50.000 0.15 0.00 36.26 4.02
2314 4599 0.529378 CAAATCAGGGTGCCAGCTTC 59.471 55.000 0.00 0.00 0.00 3.86
2316 4601 0.610232 GACAAATCAGGGTGCCAGCT 60.610 55.000 0.00 0.00 0.00 4.24
2351 4637 5.105756 CCATCCCAGAACAAAAAGGATACAC 60.106 44.000 0.00 0.00 35.56 2.90
2364 4650 1.414919 TGCCGTATACCATCCCAGAAC 59.585 52.381 0.00 0.00 0.00 3.01
2487 6267 7.776030 TGTACCTTAAACTTGACCATCAAAAGA 59.224 33.333 0.00 0.00 35.73 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.