Multiple sequence alignment - TraesCS7B01G426600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G426600 chr7B 100.000 6131 0 0 1 6131 695918251 695912121 0.000000e+00 11322.0
1 TraesCS7B01G426600 chr7B 87.908 3060 306 37 1869 4890 697430254 697427221 0.000000e+00 3542.0
2 TraesCS7B01G426600 chr7B 85.231 3013 386 32 1919 4890 695373713 695370719 0.000000e+00 3044.0
3 TraesCS7B01G426600 chr7B 82.876 2768 387 55 1927 4623 697518827 697521578 0.000000e+00 2405.0
4 TraesCS7B01G426600 chr7B 84.162 2475 345 24 1923 4361 685208648 685211111 0.000000e+00 2355.0
5 TraesCS7B01G426600 chr7B 83.369 2369 337 37 1919 4244 697607206 697604852 0.000000e+00 2139.0
6 TraesCS7B01G426600 chr7B 83.916 2089 292 26 1978 4034 684944398 684942322 0.000000e+00 1956.0
7 TraesCS7B01G426600 chr7B 83.000 2153 326 22 1919 4041 697114662 697116804 0.000000e+00 1912.0
8 TraesCS7B01G426600 chr7B 86.094 1431 168 20 4240 5651 697428005 697426587 0.000000e+00 1511.0
9 TraesCS7B01G426600 chr7B 88.003 1292 96 19 18 1275 693342229 693340963 0.000000e+00 1472.0
10 TraesCS7B01G426600 chr7B 87.926 1292 97 19 18 1275 698884852 698883586 0.000000e+00 1467.0
11 TraesCS7B01G426600 chr7B 92.997 971 66 2 1900 2869 685079148 685078179 0.000000e+00 1415.0
12 TraesCS7B01G426600 chr7B 91.632 968 48 14 421 1386 697433173 697432237 0.000000e+00 1308.0
13 TraesCS7B01G426600 chr7B 85.439 1195 167 6 1919 3113 693340241 693339054 0.000000e+00 1236.0
14 TraesCS7B01G426600 chr7B 79.619 1629 216 62 4239 5817 695371495 695369933 0.000000e+00 1062.0
15 TraesCS7B01G426600 chr7B 81.388 1354 185 36 4327 5651 693320172 693318857 0.000000e+00 1042.0
16 TraesCS7B01G426600 chr7B 91.595 702 57 2 4191 4890 693320176 693319475 0.000000e+00 968.0
17 TraesCS7B01G426600 chr7B 82.836 1072 150 20 2865 3910 685072911 685071848 0.000000e+00 929.0
18 TraesCS7B01G426600 chr7B 94.020 602 11 1 1 577 695828531 695829132 0.000000e+00 889.0
19 TraesCS7B01G426600 chr7B 94.020 602 11 1 1 577 695850230 695850831 0.000000e+00 889.0
20 TraesCS7B01G426600 chr7B 94.615 520 19 3 784 1297 685087705 685087189 0.000000e+00 797.0
21 TraesCS7B01G426600 chr7B 81.519 790 134 11 4108 4890 695914012 695913228 1.860000e-179 640.0
22 TraesCS7B01G426600 chr7B 81.542 791 132 12 4240 5024 695914144 695913362 1.860000e-179 640.0
23 TraesCS7B01G426600 chr7B 82.379 681 80 12 4767 5430 685071831 685071174 1.930000e-154 556.0
24 TraesCS7B01G426600 chr7B 76.493 1055 163 49 4503 5509 697521046 697522063 4.270000e-136 496.0
25 TraesCS7B01G426600 chr7B 87.871 404 27 12 5657 6043 693318816 693318418 7.240000e-124 455.0
26 TraesCS7B01G426600 chr7B 90.093 323 31 1 4899 5220 697604989 697604667 9.500000e-113 418.0
27 TraesCS7B01G426600 chr7B 83.596 445 59 7 843 1275 685207893 685208335 7.400000e-109 405.0
28 TraesCS7B01G426600 chr7B 84.858 317 33 8 1564 1869 697430624 697430312 7.720000e-79 305.0
29 TraesCS7B01G426600 chr7B 81.024 332 45 9 421 740 697608703 697608378 1.320000e-61 248.0
30 TraesCS7B01G426600 chr7B 90.503 179 13 3 1373 1551 697430934 697430760 3.700000e-57 233.0
31 TraesCS7B01G426600 chr7B 86.224 196 27 0 1073 1268 697618649 697618844 4.810000e-51 213.0
32 TraesCS7B01G426600 chr7B 94.776 134 7 0 1 134 694271418 694271551 6.230000e-50 209.0
33 TraesCS7B01G426600 chr7B 80.408 245 40 7 3434 3674 697612507 697612747 4.880000e-41 180.0
34 TraesCS7B01G426600 chr7B 89.630 135 9 4 1 134 697057433 697057563 3.800000e-37 167.0
35 TraesCS7B01G426600 chr7B 75.726 379 60 17 158 521 693387509 693387870 1.770000e-35 161.0
36 TraesCS7B01G426600 chr7B 75.332 377 61 17 160 521 698924165 698924524 1.060000e-32 152.0
37 TraesCS7B01G426600 chr7B 85.047 107 10 5 1 107 693342678 693342578 3.020000e-18 104.0
38 TraesCS7B01G426600 chr7B 100.000 40 0 0 1420 1459 685080039 685080000 2.370000e-09 75.0
39 TraesCS7B01G426600 chr7B 100.000 36 0 0 68 103 693387368 693387403 3.970000e-07 67.6
40 TraesCS7B01G426600 chr7A 84.313 2416 330 27 2242 4620 700062083 700064486 0.000000e+00 2316.0
41 TraesCS7B01G426600 chr7A 84.294 2082 279 23 2196 4245 700084947 700087012 0.000000e+00 1989.0
42 TraesCS7B01G426600 chr7A 89.697 1417 125 6 1869 3271 700111263 700109854 0.000000e+00 1788.0
43 TraesCS7B01G426600 chr7A 82.663 1517 231 27 3259 4756 700109301 700107798 0.000000e+00 1315.0
44 TraesCS7B01G426600 chr7A 85.541 989 87 28 543 1500 700112746 700111783 0.000000e+00 983.0
45 TraesCS7B01G426600 chr7A 91.453 702 44 10 856 1552 700055266 700055956 0.000000e+00 950.0
46 TraesCS7B01G426600 chr7A 89.318 674 63 6 4239 4906 700108450 700107780 0.000000e+00 837.0
47 TraesCS7B01G426600 chr7A 82.045 802 128 12 4372 5164 700108449 700107655 0.000000e+00 669.0
48 TraesCS7B01G426600 chr7A 85.843 332 44 3 836 1167 700082580 700082908 3.520000e-92 350.0
49 TraesCS7B01G426600 chr7A 92.647 136 8 1 1 134 700055037 700055172 1.740000e-45 195.0
50 TraesCS7B01G426600 chr7A 86.861 137 13 2 1565 1701 700111609 700111478 1.380000e-31 148.0
51 TraesCS7B01G426600 chr7A 80.556 180 18 8 5657 5820 700106128 700105950 8.350000e-24 122.0
52 TraesCS7B01G426600 chr7A 82.353 136 24 0 4109 4244 700107917 700107782 1.080000e-22 119.0
53 TraesCS7B01G426600 chr7A 97.143 35 0 1 1520 1554 700111778 700111745 2.390000e-04 58.4
54 TraesCS7B01G426600 chrUn 82.926 2167 309 40 1919 4041 312470616 312468467 0.000000e+00 1895.0
55 TraesCS7B01G426600 chr7D 90.547 1206 51 27 4931 6131 608736902 608735755 0.000000e+00 1537.0
56 TraesCS7B01G426600 chr7D 86.510 467 56 6 835 1298 608082819 608083281 1.970000e-139 507.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G426600 chr7B 695912121 695918251 6130 True 11322.000000 11322 100.000000 1 6131 1 chr7B.!!$R3 6130
1 TraesCS7B01G426600 chr7B 695369933 695373713 3780 True 2053.000000 3044 82.425000 1919 5817 2 chr7B.!!$R9 3898
2 TraesCS7B01G426600 chr7B 684942322 684944398 2076 True 1956.000000 1956 83.916000 1978 4034 1 chr7B.!!$R1 2056
3 TraesCS7B01G426600 chr7B 697114662 697116804 2142 False 1912.000000 1912 83.000000 1919 4041 1 chr7B.!!$F5 2122
4 TraesCS7B01G426600 chr7B 698883586 698884852 1266 True 1467.000000 1467 87.926000 18 1275 1 chr7B.!!$R4 1257
5 TraesCS7B01G426600 chr7B 697518827 697522063 3236 False 1450.500000 2405 79.684500 1927 5509 2 chr7B.!!$F11 3582
6 TraesCS7B01G426600 chr7B 685207893 685211111 3218 False 1380.000000 2355 83.879000 843 4361 2 chr7B.!!$F9 3518
7 TraesCS7B01G426600 chr7B 697426587 697433173 6586 True 1379.800000 3542 88.199000 421 5651 5 chr7B.!!$R11 5230
8 TraesCS7B01G426600 chr7B 693339054 693342678 3624 True 937.333333 1472 86.163000 1 3113 3 chr7B.!!$R8 3112
9 TraesCS7B01G426600 chr7B 697604667 697608703 4036 True 935.000000 2139 84.828667 421 5220 3 chr7B.!!$R12 4799
10 TraesCS7B01G426600 chr7B 695828531 695829132 601 False 889.000000 889 94.020000 1 577 1 chr7B.!!$F2 576
11 TraesCS7B01G426600 chr7B 695850230 695850831 601 False 889.000000 889 94.020000 1 577 1 chr7B.!!$F3 576
12 TraesCS7B01G426600 chr7B 693318418 693320176 1758 True 821.666667 1042 86.951333 4191 6043 3 chr7B.!!$R7 1852
13 TraesCS7B01G426600 chr7B 685087189 685087705 516 True 797.000000 797 94.615000 784 1297 1 chr7B.!!$R2 513
14 TraesCS7B01G426600 chr7B 685078179 685080039 1860 True 745.000000 1415 96.498500 1420 2869 2 chr7B.!!$R6 1449
15 TraesCS7B01G426600 chr7B 685071174 685072911 1737 True 742.500000 929 82.607500 2865 5430 2 chr7B.!!$R5 2565
16 TraesCS7B01G426600 chr7B 695913228 695914144 916 True 640.000000 640 81.530500 4108 5024 2 chr7B.!!$R10 916
17 TraesCS7B01G426600 chr7A 700062083 700064486 2403 False 2316.000000 2316 84.313000 2242 4620 1 chr7A.!!$F1 2378
18 TraesCS7B01G426600 chr7A 700082580 700087012 4432 False 1169.500000 1989 85.068500 836 4245 2 chr7A.!!$F3 3409
19 TraesCS7B01G426600 chr7A 700105950 700112746 6796 True 671.044444 1788 86.241889 543 5820 9 chr7A.!!$R1 5277
20 TraesCS7B01G426600 chr7A 700055037 700055956 919 False 572.500000 950 92.050000 1 1552 2 chr7A.!!$F2 1551
21 TraesCS7B01G426600 chrUn 312468467 312470616 2149 True 1895.000000 1895 82.926000 1919 4041 1 chrUn.!!$R1 2122
22 TraesCS7B01G426600 chr7D 608735755 608736902 1147 True 1537.000000 1537 90.547000 4931 6131 1 chr7D.!!$R1 1200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 669 0.250513 CTCCCTAGTTGCCCAGTGTC 59.749 60.000 0.00 0.0 0.00 3.67 F
678 1208 0.470766 TGTGTTTCCCCACGCTACTT 59.529 50.000 0.00 0.0 38.20 2.24 F
1811 5365 0.955919 GTGTGGGCTTGTGCTACTCC 60.956 60.000 0.00 0.0 39.59 3.85 F
1914 5532 1.004398 CTGCGTTCGTGTGCTAACAAA 60.004 47.619 0.00 0.0 38.27 2.83 F
2766 6738 1.091771 ATTGGAGCGGACATTGCGAG 61.092 55.000 0.00 0.0 37.44 5.03 F
3195 7187 0.036022 GCAGAGGAGGTTGCTTCAGT 59.964 55.000 0.00 0.0 37.35 3.41 F
3583 8172 0.179150 TTTGTGTGGCAGTTTGACGC 60.179 50.000 0.00 0.0 36.17 5.19 F
4014 8631 0.395173 ATAACGGCGGGCCAAAGAAT 60.395 50.000 13.24 0.0 35.37 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 5187 0.861837 CGATTCCTTCATACCGCTGC 59.138 55.000 0.00 0.0 0.00 5.25 R
2044 5851 2.356793 GCTCGCCTCCCATCATCG 60.357 66.667 0.00 0.0 0.00 3.84 R
2754 6726 0.095935 CAGCTTTCTCGCAATGTCCG 59.904 55.000 0.00 0.0 0.00 4.79 R
2785 6757 0.322975 CCACTGTTCTGGCTGCTAGT 59.677 55.000 12.90 0.0 0.00 2.57 R
4502 10316 0.601558 CAAGGCATTGAAGCTGCAGT 59.398 50.000 16.64 0.0 41.47 4.40 R
4857 10671 0.108585 GAGACTTGGGCAGTGTTGGA 59.891 55.000 0.00 0.0 35.01 3.53 R
4858 10672 0.109342 AGAGACTTGGGCAGTGTTGG 59.891 55.000 0.00 0.0 35.01 3.77 R
5892 12870 0.189574 TTTCCCCTGAATGCCCAACA 59.810 50.000 0.00 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 661 6.651975 TCTTAGCTATAACTCCCTAGTTGC 57.348 41.667 0.00 0.00 45.63 4.17
184 669 0.250513 CTCCCTAGTTGCCCAGTGTC 59.749 60.000 0.00 0.00 0.00 3.67
415 926 2.406357 GTCGTTACTGTCAGGCGTAAAC 59.594 50.000 4.53 0.44 0.00 2.01
526 1047 6.852853 GGTGCATTAATCAAATCATAGTGTCG 59.147 38.462 0.00 0.00 0.00 4.35
644 1172 2.034558 CCGCCGAATAGAAAATGGCATT 59.965 45.455 6.96 6.96 46.02 3.56
672 1202 0.602905 GTCCTCTGTGTTTCCCCACG 60.603 60.000 0.00 0.00 38.20 4.94
678 1208 0.470766 TGTGTTTCCCCACGCTACTT 59.529 50.000 0.00 0.00 38.20 2.24
827 1428 3.753806 CTGCAGCCTGAGCCTAGCC 62.754 68.421 0.00 0.00 41.25 3.93
953 1560 2.670939 AGGCTCCTCAACAAAGCTTTT 58.329 42.857 9.53 0.00 36.29 2.27
1307 2056 6.930722 TGTGCCACATAGATATGTATGACTTG 59.069 38.462 22.88 12.51 44.57 3.16
1311 2060 8.663025 GCCACATAGATATGTATGACTTGAATG 58.337 37.037 22.88 10.76 44.57 2.67
1496 4329 7.597288 AATTAGCCCAATTACCAGGAATAAC 57.403 36.000 0.00 0.00 34.99 1.89
1502 4335 5.719563 CCCAATTACCAGGAATAACCAAAGT 59.280 40.000 0.00 0.00 42.04 2.66
1508 4341 4.587262 ACCAGGAATAACCAAAGTTTGTCC 59.413 41.667 14.36 13.16 42.04 4.02
1511 4344 4.832823 AGGAATAACCAAAGTTTGTCCCAG 59.167 41.667 14.36 1.45 37.97 4.45
1548 4381 1.489230 ACCGTCTTCCACAAGTTCCTT 59.511 47.619 0.00 0.00 0.00 3.36
1554 4387 5.526111 CGTCTTCCACAAGTTCCTTCTTTTA 59.474 40.000 0.00 0.00 0.00 1.52
1557 4390 7.713942 GTCTTCCACAAGTTCCTTCTTTTACTA 59.286 37.037 0.00 0.00 0.00 1.82
1558 4391 8.269317 TCTTCCACAAGTTCCTTCTTTTACTAA 58.731 33.333 0.00 0.00 0.00 2.24
1559 4392 8.810990 TTCCACAAGTTCCTTCTTTTACTAAA 57.189 30.769 0.00 0.00 0.00 1.85
1560 4393 8.446599 TCCACAAGTTCCTTCTTTTACTAAAG 57.553 34.615 0.00 0.00 41.74 1.85
1561 4394 7.501225 TCCACAAGTTCCTTCTTTTACTAAAGG 59.499 37.037 0.00 0.00 40.93 3.11
1562 4395 7.501225 CCACAAGTTCCTTCTTTTACTAAAGGA 59.499 37.037 0.00 0.00 45.22 3.36
1674 5160 5.339423 AATCTTTCTTTCCTCTCCCCAAA 57.661 39.130 0.00 0.00 0.00 3.28
1701 5187 2.957680 TCTAGAGGAGCATGAGAAGCAG 59.042 50.000 0.00 0.00 0.00 4.24
1726 5267 4.062991 GCGGTATGAAGGAATCGGTTTAT 58.937 43.478 0.00 0.00 0.00 1.40
1728 5269 5.697633 GCGGTATGAAGGAATCGGTTTATTA 59.302 40.000 0.00 0.00 0.00 0.98
1731 5272 7.440255 CGGTATGAAGGAATCGGTTTATTACTT 59.560 37.037 0.00 0.00 41.72 2.24
1811 5365 0.955919 GTGTGGGCTTGTGCTACTCC 60.956 60.000 0.00 0.00 39.59 3.85
1812 5366 1.127567 TGTGGGCTTGTGCTACTCCT 61.128 55.000 0.00 0.00 39.59 3.69
1842 5400 6.391227 AATGCTTTGCCTGTATGGTATTAC 57.609 37.500 0.00 0.00 38.35 1.89
1898 5516 3.751621 CCTCTAATTTCAAGTTGCTGCG 58.248 45.455 0.00 0.00 0.00 5.18
1914 5532 1.004398 CTGCGTTCGTGTGCTAACAAA 60.004 47.619 0.00 0.00 38.27 2.83
1958 5765 5.063880 AGAGTGGTATGTCAAAAGTGGAAC 58.936 41.667 0.00 0.00 0.00 3.62
2002 5809 8.249327 AGATAGAAAGTGCTATAAATGATGCG 57.751 34.615 0.00 0.00 31.45 4.73
2044 5851 1.961277 CTTGCCAGGTGGACGTGAC 60.961 63.158 0.00 0.00 37.39 3.67
2284 6256 7.461918 CACAGTGTGTTTATGATCATGAGAAG 58.538 38.462 18.72 2.29 0.00 2.85
2303 6275 8.225603 TGAGAAGAAGTGTAAGCAAGAAAAAT 57.774 30.769 0.00 0.00 0.00 1.82
2335 6307 6.605849 CCATTTCGATATTGTCATGTGGATC 58.394 40.000 0.00 0.00 0.00 3.36
2348 6320 2.715046 TGTGGATCCATGTTTCTCAGC 58.285 47.619 19.62 0.84 0.00 4.26
2355 6327 4.524316 TCCATGTTTCTCAGCAATTTGG 57.476 40.909 0.00 0.00 0.00 3.28
2367 6339 3.998341 CAGCAATTTGGTTTGGATTCCAG 59.002 43.478 5.36 0.00 33.81 3.86
2538 6510 4.283722 AGGAGACCGTGAAGAACTACAAAT 59.716 41.667 0.00 0.00 0.00 2.32
2575 6547 2.683211 ATGTTGGAAAGGCAGGAAGT 57.317 45.000 0.00 0.00 0.00 3.01
2590 6562 4.508662 CAGGAAGTAGAATCTTGGTGACC 58.491 47.826 0.00 0.00 0.00 4.02
2659 6631 9.249053 GAGAGATGTATTCCAATATCTGACCTA 57.751 37.037 0.00 0.00 30.49 3.08
2691 6663 3.670055 GTGTTCCTTGAAATGTTCATGCG 59.330 43.478 0.00 0.00 39.84 4.73
2733 6705 2.358939 GTAAGTGACCACGATCGGTT 57.641 50.000 20.98 2.18 40.22 4.44
2754 6726 6.912591 CGGTTAATACTTGAAATGATTGGAGC 59.087 38.462 0.00 0.00 0.00 4.70
2766 6738 1.091771 ATTGGAGCGGACATTGCGAG 61.092 55.000 0.00 0.00 37.44 5.03
2785 6757 3.367806 CGAGAAAGCTGAAGAGATCACCA 60.368 47.826 0.00 0.00 33.47 4.17
2834 6807 3.192844 TCTCCGTGAGATACAAACTGTCC 59.807 47.826 0.11 0.00 33.35 4.02
2863 6836 4.078336 TGGAGGAGTCAGAAAGATAGGGAT 60.078 45.833 0.00 0.00 0.00 3.85
3004 6977 3.137728 AGTTAGTTAAGTTGTGGGTGGCT 59.862 43.478 0.00 0.00 0.00 4.75
3072 7045 7.826252 AGATGTTGCTCAGTATTACTTTGATGT 59.174 33.333 0.00 0.00 0.00 3.06
3195 7187 0.036022 GCAGAGGAGGTTGCTTCAGT 59.964 55.000 0.00 0.00 37.35 3.41
3201 7193 2.832129 AGGAGGTTGCTTCAGTATCGAA 59.168 45.455 0.00 0.00 0.00 3.71
3204 7196 4.142881 GGAGGTTGCTTCAGTATCGAAAAC 60.143 45.833 0.00 0.00 0.00 2.43
3250 7242 5.803020 AGATGTCCGCTATCTTTTTGTTC 57.197 39.130 0.00 0.00 30.98 3.18
3289 7846 9.448438 GAGAGATGCTTACTGAGAAGATATCTA 57.552 37.037 5.46 0.00 38.96 1.98
3290 7847 9.806448 AGAGATGCTTACTGAGAAGATATCTAA 57.194 33.333 5.46 0.00 38.96 2.10
3324 7881 2.291365 CGCACCCTCATCATTGATGAA 58.709 47.619 25.29 12.63 46.51 2.57
3450 8035 7.140522 TGATATGTTCTCATTCCCAGATTCA 57.859 36.000 0.00 0.00 35.70 2.57
3460 8045 2.726821 TCCCAGATTCAATTGGTCAGC 58.273 47.619 5.42 0.00 32.40 4.26
3524 8110 3.005155 ACGAAGCTAACTTTACCGACAGT 59.995 43.478 0.00 0.00 35.82 3.55
3546 8132 6.983890 CAGTTTTTACCAAGCTTTACCACATT 59.016 34.615 0.00 0.00 0.00 2.71
3548 8134 5.365403 TTTACCAAGCTTTACCACATTCG 57.635 39.130 0.00 0.00 0.00 3.34
3567 8153 3.150767 TCGGGTGGTAGATTTTGGTTTG 58.849 45.455 0.00 0.00 0.00 2.93
3573 8159 3.068873 TGGTAGATTTTGGTTTGTGTGGC 59.931 43.478 0.00 0.00 0.00 5.01
3583 8172 0.179150 TTTGTGTGGCAGTTTGACGC 60.179 50.000 0.00 0.00 36.17 5.19
3638 8227 2.951642 ACTTGCGCCATGTAATAAGCAT 59.048 40.909 4.18 0.00 34.44 3.79
3639 8228 3.381272 ACTTGCGCCATGTAATAAGCATT 59.619 39.130 4.18 0.00 34.44 3.56
3646 8235 5.106594 CGCCATGTAATAAGCATTGCAGATA 60.107 40.000 11.91 1.50 39.66 1.98
3677 8268 4.601019 CCAAACGTTGGCAGATTGATATC 58.399 43.478 0.00 0.00 45.17 1.63
3684 8275 2.072298 GGCAGATTGATATCGCTCCAC 58.928 52.381 0.00 0.00 35.85 4.02
3757 8355 4.044426 GCTGAAACACCTAAACAAGCTTG 58.956 43.478 24.84 24.84 0.00 4.01
3766 8364 4.344968 ACCTAAACAAGCTTGAAGGCAAAT 59.655 37.500 32.50 15.29 32.73 2.32
3767 8365 5.163311 ACCTAAACAAGCTTGAAGGCAAATT 60.163 36.000 32.50 14.98 32.73 1.82
3768 8366 6.041523 ACCTAAACAAGCTTGAAGGCAAATTA 59.958 34.615 32.50 14.80 32.73 1.40
3769 8367 7.099120 CCTAAACAAGCTTGAAGGCAAATTAT 58.901 34.615 32.50 2.52 32.73 1.28
3845 8444 1.682854 TGCTGGCAAGGAAAAACTCAG 59.317 47.619 0.00 0.00 0.00 3.35
3978 8595 1.545582 CAGGGTACGAGGTTACCGAAA 59.454 52.381 0.00 0.00 37.23 3.46
4014 8631 0.395173 ATAACGGCGGGCCAAAGAAT 60.395 50.000 13.24 0.00 35.37 2.40
4096 8713 5.063944 GCTTTCATTCATCTTCAGTCGCTAA 59.936 40.000 0.00 0.00 0.00 3.09
4106 8723 8.251026 TCATCTTCAGTCGCTAATTCTTTCTAA 58.749 33.333 0.00 0.00 0.00 2.10
4367 10181 4.918583 GTCTCTTGAGGAGTTTAACGTCAG 59.081 45.833 0.00 0.00 42.40 3.51
4368 10182 3.650139 TCTTGAGGAGTTTAACGTCAGC 58.350 45.455 0.00 0.00 34.51 4.26
4408 10222 2.622064 ACGAGGAAATATGGAGCACC 57.378 50.000 0.00 0.00 0.00 5.01
4439 10253 5.106396 CGCTCAAGAAATTTGAGATCAGGTT 60.106 40.000 18.27 0.00 46.57 3.50
4498 10312 5.359716 GTCTCTTGACGAGTTTAGAGTCA 57.640 43.478 12.19 0.00 42.36 3.41
4501 10315 5.473846 TCTCTTGACGAGTTTAGAGTCATGT 59.526 40.000 12.19 0.00 43.34 3.21
4502 10316 6.653740 TCTCTTGACGAGTTTAGAGTCATGTA 59.346 38.462 12.19 0.32 43.34 2.29
4586 10400 2.130395 ACAGTCATGCGAGAATATGCG 58.870 47.619 0.00 0.00 0.00 4.73
4620 10434 4.164221 ACACTTCCAAAGTCTCTTGAGGAA 59.836 41.667 12.60 12.60 40.46 3.36
4632 10446 9.972106 AAGTCTCTTGAGGAATTTATCATCTTT 57.028 29.630 0.00 0.00 39.58 2.52
4648 10462 5.744171 TCATCTTTAACTGCAGCTTGGATA 58.256 37.500 15.27 0.00 0.00 2.59
4668 10482 5.222048 GGATACCTTACCAGGCAATATGGAA 60.222 44.000 0.00 0.00 45.56 3.53
4688 10502 1.486310 ACACCTCACAGCACTCAAGAA 59.514 47.619 0.00 0.00 0.00 2.52
4690 10504 3.144506 CACCTCACAGCACTCAAGAAAT 58.855 45.455 0.00 0.00 0.00 2.17
4693 10507 3.817084 CCTCACAGCACTCAAGAAATTGA 59.183 43.478 0.00 0.00 0.00 2.57
4753 10567 0.980423 GCCCAAGTCTCTTGAGGAGT 59.020 55.000 10.54 0.00 42.40 3.85
4756 10570 3.406764 CCCAAGTCTCTTGAGGAGTTTG 58.593 50.000 10.54 0.00 42.40 2.93
4757 10571 3.181450 CCCAAGTCTCTTGAGGAGTTTGT 60.181 47.826 10.54 0.00 42.40 2.83
4773 10587 1.497991 TTGTCGTTACAGACTGCAGC 58.502 50.000 15.27 6.85 41.47 5.25
4774 10588 0.673985 TGTCGTTACAGACTGCAGCT 59.326 50.000 15.27 9.34 41.47 4.24
4775 10589 1.063806 GTCGTTACAGACTGCAGCTG 58.936 55.000 26.43 26.43 38.09 4.24
4777 10591 1.883926 TCGTTACAGACTGCAGCTGTA 59.116 47.619 30.44 30.44 44.27 2.74
4782 10596 2.704572 ACAGACTGCAGCTGTAATTCC 58.295 47.619 30.02 0.00 44.27 3.01
4783 10597 2.304180 ACAGACTGCAGCTGTAATTCCT 59.696 45.455 30.02 12.93 44.27 3.36
4784 10598 3.244700 ACAGACTGCAGCTGTAATTCCTT 60.245 43.478 30.02 12.38 44.27 3.36
4785 10599 4.020218 ACAGACTGCAGCTGTAATTCCTTA 60.020 41.667 30.02 0.00 44.27 2.69
4786 10600 4.331168 CAGACTGCAGCTGTAATTCCTTAC 59.669 45.833 22.41 0.00 38.17 2.34
4787 10601 3.610911 ACTGCAGCTGTAATTCCTTACC 58.389 45.455 15.27 0.00 37.09 2.85
4788 10602 3.009033 ACTGCAGCTGTAATTCCTTACCA 59.991 43.478 15.27 0.00 37.09 3.25
4789 10603 3.609853 TGCAGCTGTAATTCCTTACCAG 58.390 45.455 16.64 0.00 37.09 4.00
4790 10604 2.945668 GCAGCTGTAATTCCTTACCAGG 59.054 50.000 16.64 0.00 42.50 4.45
4791 10605 2.945668 CAGCTGTAATTCCTTACCAGGC 59.054 50.000 5.25 0.00 40.58 4.85
4792 10606 2.576191 AGCTGTAATTCCTTACCAGGCA 59.424 45.455 0.00 0.00 40.58 4.75
4793 10607 3.010138 AGCTGTAATTCCTTACCAGGCAA 59.990 43.478 0.00 0.00 40.58 4.52
4794 10608 3.954258 GCTGTAATTCCTTACCAGGCAAT 59.046 43.478 0.00 0.00 40.58 3.56
4795 10609 5.104109 AGCTGTAATTCCTTACCAGGCAATA 60.104 40.000 0.00 0.00 40.58 1.90
4796 10610 5.770162 GCTGTAATTCCTTACCAGGCAATAT 59.230 40.000 0.00 0.00 40.58 1.28
4797 10611 6.294176 GCTGTAATTCCTTACCAGGCAATATG 60.294 42.308 0.00 0.00 40.58 1.78
4798 10612 6.068010 TGTAATTCCTTACCAGGCAATATGG 58.932 40.000 0.00 0.00 40.58 2.74
4799 10613 5.402054 AATTCCTTACCAGGCAATATGGA 57.598 39.130 0.00 0.00 40.51 3.41
4800 10614 4.871871 TTCCTTACCAGGCAATATGGAA 57.128 40.909 0.00 2.50 40.51 3.53
4801 10615 4.164843 TCCTTACCAGGCAATATGGAAC 57.835 45.455 0.00 0.00 40.51 3.62
4802 10616 3.525609 TCCTTACCAGGCAATATGGAACA 59.474 43.478 0.00 0.00 41.65 3.18
4803 10617 3.632145 CCTTACCAGGCAATATGGAACAC 59.368 47.826 0.00 0.00 40.51 3.32
4804 10618 5.467670 CCTTACCAGGCAATATGGAACACC 61.468 50.000 0.00 0.00 40.51 4.16
4805 10619 7.628279 CCTTACCAGGCAATATGGAACACCT 62.628 48.000 0.00 0.00 40.51 4.00
4815 10629 2.839486 TGGAACACCTCACATCACTC 57.161 50.000 0.00 0.00 0.00 3.51
4816 10630 2.046292 TGGAACACCTCACATCACTCA 58.954 47.619 0.00 0.00 0.00 3.41
4817 10631 2.437651 TGGAACACCTCACATCACTCAA 59.562 45.455 0.00 0.00 0.00 3.02
4818 10632 3.070018 GGAACACCTCACATCACTCAAG 58.930 50.000 0.00 0.00 0.00 3.02
4819 10633 3.244215 GGAACACCTCACATCACTCAAGA 60.244 47.826 0.00 0.00 0.00 3.02
4820 10634 4.380531 GAACACCTCACATCACTCAAGAA 58.619 43.478 0.00 0.00 0.00 2.52
4821 10635 4.000331 ACACCTCACATCACTCAAGAAG 58.000 45.455 0.00 0.00 0.00 2.85
4822 10636 2.740981 CACCTCACATCACTCAAGAAGC 59.259 50.000 0.00 0.00 0.00 3.86
4823 10637 2.636893 ACCTCACATCACTCAAGAAGCT 59.363 45.455 0.00 0.00 0.00 3.74
4824 10638 3.001414 CCTCACATCACTCAAGAAGCTG 58.999 50.000 0.00 0.00 0.00 4.24
4825 10639 3.556633 CCTCACATCACTCAAGAAGCTGT 60.557 47.826 0.00 0.00 0.00 4.40
4826 10640 4.322273 CCTCACATCACTCAAGAAGCTGTA 60.322 45.833 0.00 0.00 0.00 2.74
4827 10641 5.411831 TCACATCACTCAAGAAGCTGTAT 57.588 39.130 0.00 0.00 0.00 2.29
4828 10642 6.406288 CCTCACATCACTCAAGAAGCTGTATA 60.406 42.308 0.00 0.00 0.00 1.47
4829 10643 7.117285 TCACATCACTCAAGAAGCTGTATAT 57.883 36.000 0.00 0.00 0.00 0.86
4830 10644 8.237811 TCACATCACTCAAGAAGCTGTATATA 57.762 34.615 0.00 0.00 0.00 0.86
4831 10645 8.138074 TCACATCACTCAAGAAGCTGTATATAC 58.862 37.037 5.89 5.89 0.00 1.47
4832 10646 7.922811 CACATCACTCAAGAAGCTGTATATACA 59.077 37.037 14.75 14.75 34.56 2.29
4833 10647 7.923344 ACATCACTCAAGAAGCTGTATATACAC 59.077 37.037 11.62 8.96 31.93 2.90
4834 10648 7.646548 TCACTCAAGAAGCTGTATATACACT 57.353 36.000 11.62 10.89 31.93 3.55
4835 10649 7.708051 TCACTCAAGAAGCTGTATATACACTC 58.292 38.462 11.62 8.67 31.93 3.51
4836 10650 7.339466 TCACTCAAGAAGCTGTATATACACTCA 59.661 37.037 11.62 0.00 31.93 3.41
4837 10651 8.140628 CACTCAAGAAGCTGTATATACACTCAT 58.859 37.037 11.62 0.28 31.93 2.90
4838 10652 8.700051 ACTCAAGAAGCTGTATATACACTCATT 58.300 33.333 11.62 9.27 31.93 2.57
4839 10653 9.190858 CTCAAGAAGCTGTATATACACTCATTC 57.809 37.037 11.62 12.14 31.93 2.67
4840 10654 8.695456 TCAAGAAGCTGTATATACACTCATTCA 58.305 33.333 11.62 0.00 31.93 2.57
4841 10655 9.317936 CAAGAAGCTGTATATACACTCATTCAA 57.682 33.333 11.62 0.00 31.93 2.69
4842 10656 9.539825 AAGAAGCTGTATATACACTCATTCAAG 57.460 33.333 11.62 0.57 31.93 3.02
4843 10657 8.700051 AGAAGCTGTATATACACTCATTCAAGT 58.300 33.333 11.62 0.00 31.93 3.16
4844 10658 9.967346 GAAGCTGTATATACACTCATTCAAGTA 57.033 33.333 11.62 0.00 31.93 2.24
4852 10666 5.998454 ACACTCATTCAAGTATATGCAGC 57.002 39.130 0.00 0.00 0.00 5.25
4853 10667 4.818546 ACACTCATTCAAGTATATGCAGCC 59.181 41.667 0.00 0.00 0.00 4.85
4854 10668 4.060900 ACTCATTCAAGTATATGCAGCCG 58.939 43.478 0.00 0.00 0.00 5.52
4855 10669 2.807967 TCATTCAAGTATATGCAGCCGC 59.192 45.455 0.00 0.00 39.24 6.53
4856 10670 2.620251 TTCAAGTATATGCAGCCGCT 57.380 45.000 0.00 0.00 39.64 5.52
4857 10671 2.620251 TCAAGTATATGCAGCCGCTT 57.380 45.000 0.00 0.00 39.64 4.68
4858 10672 2.483876 TCAAGTATATGCAGCCGCTTC 58.516 47.619 0.00 0.00 39.64 3.86
4859 10673 1.532868 CAAGTATATGCAGCCGCTTCC 59.467 52.381 0.00 0.00 39.64 3.46
4860 10674 0.758734 AGTATATGCAGCCGCTTCCA 59.241 50.000 0.00 0.00 39.64 3.53
4861 10675 1.140852 AGTATATGCAGCCGCTTCCAA 59.859 47.619 0.00 0.00 39.64 3.53
4862 10676 1.264288 GTATATGCAGCCGCTTCCAAC 59.736 52.381 0.00 0.00 39.64 3.77
4863 10677 0.394216 ATATGCAGCCGCTTCCAACA 60.394 50.000 0.00 0.00 39.64 3.33
4864 10678 1.305219 TATGCAGCCGCTTCCAACAC 61.305 55.000 0.00 0.00 39.64 3.32
4865 10679 2.980233 GCAGCCGCTTCCAACACT 60.980 61.111 0.00 0.00 34.30 3.55
4866 10680 2.949106 CAGCCGCTTCCAACACTG 59.051 61.111 0.00 0.00 0.00 3.66
4867 10681 2.980233 AGCCGCTTCCAACACTGC 60.980 61.111 0.00 0.00 0.00 4.40
4868 10682 4.043200 GCCGCTTCCAACACTGCC 62.043 66.667 0.00 0.00 0.00 4.85
4869 10683 3.365265 CCGCTTCCAACACTGCCC 61.365 66.667 0.00 0.00 0.00 5.36
4870 10684 2.594303 CGCTTCCAACACTGCCCA 60.594 61.111 0.00 0.00 0.00 5.36
4871 10685 2.192861 CGCTTCCAACACTGCCCAA 61.193 57.895 0.00 0.00 0.00 4.12
4872 10686 1.662044 GCTTCCAACACTGCCCAAG 59.338 57.895 0.00 0.00 0.00 3.61
4873 10687 1.109323 GCTTCCAACACTGCCCAAGT 61.109 55.000 0.00 0.00 40.93 3.16
4874 10688 0.954452 CTTCCAACACTGCCCAAGTC 59.046 55.000 0.00 0.00 36.83 3.01
4875 10689 0.550914 TTCCAACACTGCCCAAGTCT 59.449 50.000 0.00 0.00 36.83 3.24
4876 10690 0.108585 TCCAACACTGCCCAAGTCTC 59.891 55.000 0.00 0.00 36.83 3.36
4877 10691 0.109342 CCAACACTGCCCAAGTCTCT 59.891 55.000 0.00 0.00 36.83 3.10
4878 10692 1.477558 CCAACACTGCCCAAGTCTCTT 60.478 52.381 0.00 0.00 36.83 2.85
4879 10693 1.605710 CAACACTGCCCAAGTCTCTTG 59.394 52.381 2.90 2.90 36.83 3.02
4880 10694 1.131638 ACACTGCCCAAGTCTCTTGA 58.868 50.000 10.54 0.00 36.83 3.02
4881 10695 1.071385 ACACTGCCCAAGTCTCTTGAG 59.929 52.381 10.54 0.00 36.83 3.02
4882 10696 0.689623 ACTGCCCAAGTCTCTTGAGG 59.310 55.000 10.54 10.49 31.64 3.86
4883 10697 0.979665 CTGCCCAAGTCTCTTGAGGA 59.020 55.000 10.54 0.00 0.00 3.71
4884 10698 0.979665 TGCCCAAGTCTCTTGAGGAG 59.020 55.000 10.54 0.00 43.12 3.69
4885 10699 0.980423 GCCCAAGTCTCTTGAGGAGT 59.020 55.000 10.54 0.00 42.40 3.85
4886 10700 1.349357 GCCCAAGTCTCTTGAGGAGTT 59.651 52.381 10.54 0.00 42.40 3.01
4887 10701 2.614229 GCCCAAGTCTCTTGAGGAGTTC 60.614 54.545 10.54 0.00 42.40 3.01
4888 10702 2.634940 CCCAAGTCTCTTGAGGAGTTCA 59.365 50.000 10.54 0.00 42.40 3.18
4889 10703 3.306641 CCCAAGTCTCTTGAGGAGTTCAG 60.307 52.174 10.54 0.00 42.40 3.02
4890 10704 3.324993 CAAGTCTCTTGAGGAGTTCAGC 58.675 50.000 3.73 0.00 42.40 4.26
4891 10705 2.603021 AGTCTCTTGAGGAGTTCAGCA 58.397 47.619 0.00 0.00 42.40 4.41
4892 10706 3.172339 AGTCTCTTGAGGAGTTCAGCAT 58.828 45.455 0.00 0.00 42.40 3.79
4893 10707 3.582208 AGTCTCTTGAGGAGTTCAGCATT 59.418 43.478 0.00 0.00 42.40 3.56
4894 10708 3.683822 GTCTCTTGAGGAGTTCAGCATTG 59.316 47.826 0.00 0.00 42.40 2.82
4895 10709 3.326006 TCTCTTGAGGAGTTCAGCATTGT 59.674 43.478 0.00 0.00 42.40 2.71
4896 10710 4.528206 TCTCTTGAGGAGTTCAGCATTGTA 59.472 41.667 0.00 0.00 42.40 2.41
4897 10711 4.569943 TCTTGAGGAGTTCAGCATTGTAC 58.430 43.478 0.00 0.00 37.07 2.90
4898 10712 4.040339 TCTTGAGGAGTTCAGCATTGTACA 59.960 41.667 0.00 0.00 37.07 2.90
4899 10713 3.664107 TGAGGAGTTCAGCATTGTACAC 58.336 45.455 0.00 0.00 0.00 2.90
4900 10714 3.324846 TGAGGAGTTCAGCATTGTACACT 59.675 43.478 0.00 0.00 0.00 3.55
4901 10715 3.668447 AGGAGTTCAGCATTGTACACTG 58.332 45.455 8.77 8.77 0.00 3.66
4902 10716 2.160417 GGAGTTCAGCATTGTACACTGC 59.840 50.000 25.93 25.93 37.27 4.40
4903 10717 2.807967 GAGTTCAGCATTGTACACTGCA 59.192 45.455 31.96 15.52 39.16 4.41
4904 10718 2.810274 AGTTCAGCATTGTACACTGCAG 59.190 45.455 31.96 26.20 39.16 4.41
4905 10719 1.159285 TCAGCATTGTACACTGCAGC 58.841 50.000 31.96 15.85 39.16 5.25
4952 10766 2.369860 AGCACCTCACATCACTCAAGAA 59.630 45.455 0.00 0.00 0.00 2.52
4957 10771 3.556633 CCTCACATCACTCAAGAAGCTGT 60.557 47.826 0.00 0.00 0.00 4.40
4994 10808 1.668751 GAATATGCGGTCGCTTCCAAA 59.331 47.619 16.36 0.00 42.51 3.28
4998 10812 1.098712 TGCGGTCGCTTCCAAAACTT 61.099 50.000 16.36 0.00 42.51 2.66
5002 10816 0.237498 GTCGCTTCCAAAACTTCCCG 59.763 55.000 0.00 0.00 0.00 5.14
5011 10825 3.899360 TCCAAAACTTCCCGAGTCTCTTA 59.101 43.478 0.00 0.00 37.72 2.10
5097 10911 2.803030 ACTGGCAGAAGATTGAGCAT 57.197 45.000 23.66 0.00 0.00 3.79
5103 10917 3.505293 GGCAGAAGATTGAGCATATTCCC 59.495 47.826 0.00 0.00 34.09 3.97
5141 10955 8.575649 ACATTCGATAGTTAAAAAGGTCCATT 57.424 30.769 0.00 0.00 37.40 3.16
5155 10971 6.636454 AAGGTCCATTCAGAAGGTATGTAA 57.364 37.500 0.00 0.00 0.00 2.41
5183 11059 8.159344 AGATTCTTTTGATGTCTTCGTTTTCT 57.841 30.769 0.00 0.00 0.00 2.52
5232 11131 6.234920 TGCAACTATTAGCAGTTAAGGTTGA 58.765 36.000 19.91 9.49 39.08 3.18
5237 11136 8.086143 ACTATTAGCAGTTAAGGTTGATGGTA 57.914 34.615 0.00 0.00 0.00 3.25
5253 11154 5.263599 TGATGGTATTTCTGATGGTTGCTT 58.736 37.500 0.00 0.00 0.00 3.91
5270 11172 7.495901 TGGTTGCTTGTATTTTTCTGATTCAA 58.504 30.769 0.00 0.00 0.00 2.69
5286 11188 5.316167 TGATTCAATTGGTAACTGTCAGCT 58.684 37.500 5.42 0.00 37.61 4.24
5316 11247 0.979709 TGGCTGAGGACAGGAGATGG 60.980 60.000 0.00 0.00 43.62 3.51
5322 11253 1.145819 GGACAGGAGATGGAGCTGC 59.854 63.158 0.00 0.00 0.00 5.25
5466 11413 1.394618 AACTACGGGCACTGCAAAAA 58.605 45.000 2.82 0.00 39.14 1.94
5720 12682 6.804677 TCACCAAATTATCCGATTTGATTGG 58.195 36.000 10.89 7.02 45.47 3.16
5735 12697 0.853530 ATTGGTAGGAATCAGGGGCC 59.146 55.000 0.00 0.00 0.00 5.80
5908 12886 0.542702 ACTTGTTGGGCATTCAGGGG 60.543 55.000 0.00 0.00 0.00 4.79
5911 12889 0.189574 TGTTGGGCATTCAGGGGAAA 59.810 50.000 0.00 0.00 36.43 3.13
6117 13096 7.485810 TGCTTTTCTAACTTTGGTTTACCTTC 58.514 34.615 0.00 0.00 36.92 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 659 1.191535 AGTTATAGCGACACTGGGCA 58.808 50.000 0.00 0.00 0.00 5.36
176 661 5.597806 TGATTAAGTTATAGCGACACTGGG 58.402 41.667 0.00 0.00 0.00 4.45
526 1047 7.336396 TCCTACTTTTCTCCTTAATTAGTGCC 58.664 38.462 0.00 0.00 0.00 5.01
621 1149 0.310854 CCATTTTCTATTCGGCGGCC 59.689 55.000 9.54 9.54 0.00 6.13
644 1172 0.900182 ACACAGAGGACGCAGGATGA 60.900 55.000 0.00 0.00 39.69 2.92
678 1208 0.835971 TCTGGTGTGAGGCAGGCTAA 60.836 55.000 0.00 0.00 0.00 3.09
705 1236 2.287547 GCTTGGAGCTCTCTGATCTACG 60.288 54.545 14.64 0.00 38.45 3.51
827 1428 1.078848 CGTTGGGGAGAGAAGGCTG 60.079 63.158 0.00 0.00 0.00 4.85
953 1560 1.606994 CGTTGAAATCCAGGACGGTGA 60.607 52.381 0.00 0.00 35.57 4.02
1311 2060 6.642917 CAAACAAGTGAGAATGCATTTCAAC 58.357 36.000 14.33 11.62 36.75 3.18
1496 4329 2.623416 GGAAGACTGGGACAAACTTTGG 59.377 50.000 6.47 0.00 38.70 3.28
1502 4335 2.038557 GCTAGTGGAAGACTGGGACAAA 59.961 50.000 0.00 0.00 38.70 2.83
1508 4341 2.103373 TGCTAGCTAGTGGAAGACTGG 58.897 52.381 21.62 0.00 35.96 4.00
1511 4344 1.202313 CGGTGCTAGCTAGTGGAAGAC 60.202 57.143 21.62 8.99 0.00 3.01
1674 5160 2.971330 CTCATGCTCCTCTAGATTGGGT 59.029 50.000 0.00 0.00 0.00 4.51
1701 5187 0.861837 CGATTCCTTCATACCGCTGC 59.138 55.000 0.00 0.00 0.00 5.25
1811 5365 4.510038 ACAGGCAAAGCATTTCTAACAG 57.490 40.909 0.00 0.00 35.03 3.16
1812 5366 5.105797 CCATACAGGCAAAGCATTTCTAACA 60.106 40.000 0.00 0.00 35.03 2.41
1842 5400 7.170998 ACTCAAATTCTACTTAACACCAACTCG 59.829 37.037 0.00 0.00 0.00 4.18
1898 5516 3.268013 AGCATTTGTTAGCACACGAAC 57.732 42.857 0.00 0.00 30.32 3.95
1914 5532 4.527816 TCTCCTGCAAAAACCAAATAGCAT 59.472 37.500 0.00 0.00 0.00 3.79
1958 5765 6.998074 TCTATCTTCTCTAGGCTCTTCTTCAG 59.002 42.308 0.00 0.00 0.00 3.02
2002 5809 6.640907 AGTTCAGTTGTTTCAAAACTTCACAC 59.359 34.615 7.12 0.00 39.59 3.82
2044 5851 2.356793 GCTCGCCTCCCATCATCG 60.357 66.667 0.00 0.00 0.00 3.84
2284 6256 7.169813 CCTTCCAATTTTTCTTGCTTACACTTC 59.830 37.037 0.00 0.00 0.00 3.01
2335 6307 4.261578 ACCAAATTGCTGAGAAACATGG 57.738 40.909 4.87 4.87 0.00 3.66
2348 6320 6.940831 AAAACTGGAATCCAAACCAAATTG 57.059 33.333 2.61 0.00 35.67 2.32
2355 6327 5.321927 TCTCCCTAAAACTGGAATCCAAAC 58.678 41.667 2.61 0.00 30.80 2.93
2367 6339 4.017126 CCCCTCAAACATCTCCCTAAAAC 58.983 47.826 0.00 0.00 0.00 2.43
2538 6510 5.335583 CCAACATTCAGCGGAGAAATTAACA 60.336 40.000 0.00 0.00 0.00 2.41
2575 6547 3.427573 TCGACTGGTCACCAAGATTCTA 58.572 45.455 0.00 0.00 30.80 2.10
2607 6579 2.432510 ACAGCACCCAGAGCTACTAATC 59.567 50.000 0.00 0.00 41.14 1.75
2659 6631 8.641498 ACATTTCAAGGAACACTTTATCATCT 57.359 30.769 0.00 0.00 37.29 2.90
2725 6697 7.798516 CCAATCATTTCAAGTATTAACCGATCG 59.201 37.037 8.51 8.51 0.00 3.69
2731 6703 6.912591 CCGCTCCAATCATTTCAAGTATTAAC 59.087 38.462 0.00 0.00 0.00 2.01
2732 6704 6.826231 TCCGCTCCAATCATTTCAAGTATTAA 59.174 34.615 0.00 0.00 0.00 1.40
2733 6705 6.260050 GTCCGCTCCAATCATTTCAAGTATTA 59.740 38.462 0.00 0.00 0.00 0.98
2754 6726 0.095935 CAGCTTTCTCGCAATGTCCG 59.904 55.000 0.00 0.00 0.00 4.79
2785 6757 0.322975 CCACTGTTCTGGCTGCTAGT 59.677 55.000 12.90 0.00 0.00 2.57
2812 6784 3.192844 GGACAGTTTGTATCTCACGGAGA 59.807 47.826 6.14 6.14 43.20 3.71
2834 6807 4.708177 TCTTTCTGACTCCTCCAAAACTG 58.292 43.478 0.00 0.00 0.00 3.16
2863 6836 4.503910 CTCCCATTGTGTCGTTCATAAGA 58.496 43.478 0.00 0.00 31.17 2.10
3004 6977 8.262933 GCCTTACTAGTCTTTATAAACCCTTCA 58.737 37.037 0.00 0.00 0.00 3.02
3072 7045 5.945191 TGCAGAAATGAGGATGACAACAATA 59.055 36.000 0.00 0.00 0.00 1.90
3128 7101 6.092955 TGTAAAGTAATCAACCTCACGTCT 57.907 37.500 0.00 0.00 0.00 4.18
3201 7193 1.141053 ACTTCTCCTGTGAAGCCGTTT 59.859 47.619 8.46 0.00 45.20 3.60
3204 7196 1.433534 GAACTTCTCCTGTGAAGCCG 58.566 55.000 8.46 0.00 45.20 5.52
3226 7218 5.803020 ACAAAAAGATAGCGGACATCTTC 57.197 39.130 5.36 0.00 40.92 2.87
3250 7242 8.952278 AGTAAGCATCTCTCTATTATAAGTCCG 58.048 37.037 0.00 0.00 0.00 4.79
3289 7846 4.384940 AGGGTGCGTAAATTTTGCAATTT 58.615 34.783 16.45 1.10 43.67 1.82
3290 7847 3.993736 GAGGGTGCGTAAATTTTGCAATT 59.006 39.130 16.45 7.72 40.83 2.32
3324 7881 5.505780 TCGTTTGATGGAACCCTTATCATT 58.494 37.500 0.00 0.00 31.54 2.57
3381 7945 1.747367 CAATTTCCGCAGCCCCGTA 60.747 57.895 0.00 0.00 0.00 4.02
3450 8035 3.083122 AGATGCTTCAGCTGACCAATT 57.917 42.857 18.03 6.63 42.66 2.32
3460 8045 3.545078 GCAAAATAACGCAGATGCTTCAG 59.455 43.478 2.95 0.00 39.32 3.02
3524 8110 6.210078 CGAATGTGGTAAAGCTTGGTAAAAA 58.790 36.000 0.00 0.00 0.00 1.94
3546 8132 3.150767 CAAACCAAAATCTACCACCCGA 58.849 45.455 0.00 0.00 0.00 5.14
3548 8134 3.639561 ACACAAACCAAAATCTACCACCC 59.360 43.478 0.00 0.00 0.00 4.61
3573 8159 2.069273 CCACTAGAAGGCGTCAAACTG 58.931 52.381 2.69 0.00 0.00 3.16
3583 8172 7.295322 TCATCATATCTTCACCACTAGAAGG 57.705 40.000 0.00 0.00 42.09 3.46
3669 8260 1.069204 AGCGTGTGGAGCGATATCAAT 59.931 47.619 3.12 0.00 40.04 2.57
3677 8268 1.421410 GAATGGTAGCGTGTGGAGCG 61.421 60.000 0.00 0.00 40.04 5.03
3684 8275 5.220662 CCTTATTGTGAAGAATGGTAGCGTG 60.221 44.000 0.00 0.00 0.00 5.34
3757 8355 7.495055 AGACCATTGATCAATAATTTGCCTTC 58.505 34.615 20.32 6.52 32.61 3.46
3766 8364 8.812513 ACATTCTCAAGACCATTGATCAATAA 57.187 30.769 20.32 8.54 0.00 1.40
3767 8365 8.680001 CAACATTCTCAAGACCATTGATCAATA 58.320 33.333 20.32 2.81 0.00 1.90
3768 8366 7.395206 TCAACATTCTCAAGACCATTGATCAAT 59.605 33.333 15.36 15.36 0.00 2.57
3769 8367 6.716173 TCAACATTCTCAAGACCATTGATCAA 59.284 34.615 11.26 11.26 0.00 2.57
3845 8444 3.934068 TCCCATTCGAGTACCAGTTTTC 58.066 45.455 0.00 0.00 0.00 2.29
3948 8565 2.372264 CTCGTACCCTGGTACTTGCTA 58.628 52.381 20.95 4.32 46.22 3.49
3960 8577 2.543641 CATTTCGGTAACCTCGTACCC 58.456 52.381 0.00 0.00 40.53 3.69
3978 8595 4.326826 CGTTATGCTTACCCATCATCCAT 58.673 43.478 0.00 0.00 0.00 3.41
4014 8631 7.566760 TCTTCTGAATGTAAGTTCTTGCAAA 57.433 32.000 0.00 0.00 0.00 3.68
4096 8713 6.571150 GCATTCCAGTTGCAGTTAGAAAGAAT 60.571 38.462 0.00 0.00 39.90 2.40
4106 8723 0.963962 CAAGGCATTCCAGTTGCAGT 59.036 50.000 0.00 0.00 41.95 4.40
4367 10181 2.882876 CATCCCTGCTGCAGTTGC 59.117 61.111 26.41 1.91 42.50 4.17
4368 10182 2.882876 GCATCCCTGCTGCAGTTG 59.117 61.111 26.41 20.42 45.32 3.16
4408 10222 5.121298 TCTCAAATTTCTTGAGCGATGTGAG 59.879 40.000 9.19 0.00 44.08 3.51
4439 10253 1.798223 GCGACCGCATATTCTTGCATA 59.202 47.619 9.73 0.00 42.91 3.14
4493 10307 2.964740 TGAAGCTGCAGTACATGACTC 58.035 47.619 16.64 1.63 35.64 3.36
4497 10311 2.479049 GGCATTGAAGCTGCAGTACATG 60.479 50.000 16.64 11.49 41.47 3.21
4498 10312 1.747355 GGCATTGAAGCTGCAGTACAT 59.253 47.619 16.64 0.00 41.47 2.29
4501 10315 1.814394 CAAGGCATTGAAGCTGCAGTA 59.186 47.619 16.64 0.00 41.47 2.74
4502 10316 0.601558 CAAGGCATTGAAGCTGCAGT 59.398 50.000 16.64 0.00 41.47 4.40
4561 10375 6.075152 CGCATATTCTCGCATGACTGTATATC 60.075 42.308 0.00 0.00 0.00 1.63
4586 10400 1.398692 TGGAAGTGTTGGAAGCAACC 58.601 50.000 0.00 0.00 34.37 3.77
4620 10434 7.340232 TCCAAGCTGCAGTTAAAGATGATAAAT 59.660 33.333 16.64 0.00 0.00 1.40
4632 10446 4.383770 GGTAAGGTATCCAAGCTGCAGTTA 60.384 45.833 16.64 0.00 35.65 2.24
4635 10449 2.092968 TGGTAAGGTATCCAAGCTGCAG 60.093 50.000 10.11 10.11 35.65 4.41
4648 10462 3.268334 TGTTCCATATTGCCTGGTAAGGT 59.732 43.478 3.10 0.00 46.43 3.50
4668 10482 1.123077 TCTTGAGTGCTGTGAGGTGT 58.877 50.000 0.00 0.00 0.00 4.16
4701 10515 9.547753 GGAAGCAACAGTATATTCTTGAAGATA 57.452 33.333 0.00 0.00 0.00 1.98
4702 10516 8.049117 TGGAAGCAACAGTATATTCTTGAAGAT 58.951 33.333 0.00 0.00 0.00 2.40
4703 10517 7.394016 TGGAAGCAACAGTATATTCTTGAAGA 58.606 34.615 0.00 0.00 0.00 2.87
4704 10518 7.615582 TGGAAGCAACAGTATATTCTTGAAG 57.384 36.000 0.00 0.00 0.00 3.02
4706 10520 6.939730 TGTTGGAAGCAACAGTATATTCTTGA 59.060 34.615 0.00 0.00 39.80 3.02
4721 10535 1.076412 TTGGGCAGTGTTGGAAGCA 60.076 52.632 0.00 0.00 0.00 3.91
4753 10567 1.864711 GCTGCAGTCTGTAACGACAAA 59.135 47.619 16.64 0.00 36.38 2.83
4756 10570 1.063806 CAGCTGCAGTCTGTAACGAC 58.936 55.000 22.41 2.06 0.00 4.34
4757 10571 0.673985 ACAGCTGCAGTCTGTAACGA 59.326 50.000 30.02 0.00 42.45 3.85
4781 10595 7.628279 AGGTGTTCCATATTGCCTGGTAAGG 62.628 48.000 3.10 0.00 40.59 2.69
4782 10596 3.632145 GGTGTTCCATATTGCCTGGTAAG 59.368 47.826 3.10 0.00 35.19 2.34
4783 10597 3.268334 AGGTGTTCCATATTGCCTGGTAA 59.732 43.478 0.00 0.00 35.19 2.85
4784 10598 2.849943 AGGTGTTCCATATTGCCTGGTA 59.150 45.455 0.00 0.00 35.19 3.25
4785 10599 1.640670 AGGTGTTCCATATTGCCTGGT 59.359 47.619 0.00 0.00 35.19 4.00
4786 10600 2.301346 GAGGTGTTCCATATTGCCTGG 58.699 52.381 0.00 0.00 35.89 4.45
4787 10601 2.684881 GTGAGGTGTTCCATATTGCCTG 59.315 50.000 0.00 0.00 35.89 4.85
4788 10602 2.308570 TGTGAGGTGTTCCATATTGCCT 59.691 45.455 0.00 0.00 35.89 4.75
4789 10603 2.722094 TGTGAGGTGTTCCATATTGCC 58.278 47.619 0.00 0.00 35.89 4.52
4790 10604 3.947196 TGATGTGAGGTGTTCCATATTGC 59.053 43.478 0.00 0.00 35.89 3.56
4791 10605 5.188434 AGTGATGTGAGGTGTTCCATATTG 58.812 41.667 0.00 0.00 35.89 1.90
4792 10606 5.045651 TGAGTGATGTGAGGTGTTCCATATT 60.046 40.000 0.00 0.00 35.89 1.28
4793 10607 4.471025 TGAGTGATGTGAGGTGTTCCATAT 59.529 41.667 0.00 0.00 35.89 1.78
4794 10608 3.837731 TGAGTGATGTGAGGTGTTCCATA 59.162 43.478 0.00 0.00 35.89 2.74
4795 10609 2.639347 TGAGTGATGTGAGGTGTTCCAT 59.361 45.455 0.00 0.00 35.89 3.41
4796 10610 2.046292 TGAGTGATGTGAGGTGTTCCA 58.954 47.619 0.00 0.00 35.89 3.53
4797 10611 2.839486 TGAGTGATGTGAGGTGTTCC 57.161 50.000 0.00 0.00 0.00 3.62
4798 10612 3.995199 TCTTGAGTGATGTGAGGTGTTC 58.005 45.455 0.00 0.00 0.00 3.18
4799 10613 4.384056 CTTCTTGAGTGATGTGAGGTGTT 58.616 43.478 0.00 0.00 0.00 3.32
4800 10614 3.805108 GCTTCTTGAGTGATGTGAGGTGT 60.805 47.826 0.00 0.00 0.00 4.16
4801 10615 2.740981 GCTTCTTGAGTGATGTGAGGTG 59.259 50.000 0.00 0.00 0.00 4.00
4802 10616 2.636893 AGCTTCTTGAGTGATGTGAGGT 59.363 45.455 0.00 0.00 0.00 3.85
4803 10617 3.001414 CAGCTTCTTGAGTGATGTGAGG 58.999 50.000 0.00 0.00 0.00 3.86
4804 10618 3.661944 ACAGCTTCTTGAGTGATGTGAG 58.338 45.455 0.00 0.00 0.00 3.51
4805 10619 3.758755 ACAGCTTCTTGAGTGATGTGA 57.241 42.857 0.00 0.00 0.00 3.58
4806 10620 7.922811 TGTATATACAGCTTCTTGAGTGATGTG 59.077 37.037 11.62 0.00 0.00 3.21
4807 10621 7.923344 GTGTATATACAGCTTCTTGAGTGATGT 59.077 37.037 15.93 0.00 36.78 3.06
4808 10622 8.140628 AGTGTATATACAGCTTCTTGAGTGATG 58.859 37.037 15.93 0.00 36.78 3.07
4809 10623 8.243961 AGTGTATATACAGCTTCTTGAGTGAT 57.756 34.615 15.93 0.00 36.78 3.06
4810 10624 7.339466 TGAGTGTATATACAGCTTCTTGAGTGA 59.661 37.037 15.93 0.00 36.78 3.41
4811 10625 7.484140 TGAGTGTATATACAGCTTCTTGAGTG 58.516 38.462 15.93 0.00 36.78 3.51
4812 10626 7.646548 TGAGTGTATATACAGCTTCTTGAGT 57.353 36.000 15.93 0.00 36.78 3.41
4813 10627 9.190858 GAATGAGTGTATATACAGCTTCTTGAG 57.809 37.037 15.93 0.00 36.78 3.02
4814 10628 8.695456 TGAATGAGTGTATATACAGCTTCTTGA 58.305 33.333 15.93 6.12 36.78 3.02
4815 10629 8.877808 TGAATGAGTGTATATACAGCTTCTTG 57.122 34.615 15.93 0.00 36.78 3.02
4816 10630 9.539825 CTTGAATGAGTGTATATACAGCTTCTT 57.460 33.333 15.93 12.06 36.78 2.52
4817 10631 8.700051 ACTTGAATGAGTGTATATACAGCTTCT 58.300 33.333 15.93 9.36 36.78 2.85
4818 10632 8.879342 ACTTGAATGAGTGTATATACAGCTTC 57.121 34.615 15.93 14.77 36.78 3.86
4826 10640 9.376075 GCTGCATATACTTGAATGAGTGTATAT 57.624 33.333 0.00 0.00 38.41 0.86
4827 10641 7.819415 GGCTGCATATACTTGAATGAGTGTATA 59.181 37.037 0.50 0.00 33.76 1.47
4828 10642 6.652481 GGCTGCATATACTTGAATGAGTGTAT 59.348 38.462 0.50 0.00 35.23 2.29
4829 10643 5.991606 GGCTGCATATACTTGAATGAGTGTA 59.008 40.000 0.50 0.00 0.00 2.90
4830 10644 4.818546 GGCTGCATATACTTGAATGAGTGT 59.181 41.667 0.50 0.00 0.00 3.55
4831 10645 4.084171 CGGCTGCATATACTTGAATGAGTG 60.084 45.833 0.50 0.00 0.00 3.51
4832 10646 4.060900 CGGCTGCATATACTTGAATGAGT 58.939 43.478 0.50 0.00 0.00 3.41
4833 10647 3.120408 GCGGCTGCATATACTTGAATGAG 60.120 47.826 14.08 0.00 42.15 2.90
4834 10648 2.807967 GCGGCTGCATATACTTGAATGA 59.192 45.455 14.08 0.00 42.15 2.57
4835 10649 2.810274 AGCGGCTGCATATACTTGAATG 59.190 45.455 21.93 0.00 46.23 2.67
4836 10650 3.131709 AGCGGCTGCATATACTTGAAT 57.868 42.857 21.93 0.00 46.23 2.57
4837 10651 2.620251 AGCGGCTGCATATACTTGAA 57.380 45.000 21.93 0.00 46.23 2.69
4838 10652 2.483876 GAAGCGGCTGCATATACTTGA 58.516 47.619 21.93 0.00 46.23 3.02
4839 10653 1.532868 GGAAGCGGCTGCATATACTTG 59.467 52.381 21.93 0.00 46.23 3.16
4840 10654 1.140852 TGGAAGCGGCTGCATATACTT 59.859 47.619 21.93 3.31 46.23 2.24
4841 10655 0.758734 TGGAAGCGGCTGCATATACT 59.241 50.000 21.93 0.00 46.23 2.12
4842 10656 1.264288 GTTGGAAGCGGCTGCATATAC 59.736 52.381 21.93 6.78 46.23 1.47
4843 10657 1.134250 TGTTGGAAGCGGCTGCATATA 60.134 47.619 21.93 0.00 46.23 0.86
4844 10658 0.394216 TGTTGGAAGCGGCTGCATAT 60.394 50.000 21.93 5.09 46.23 1.78
4845 10659 1.002746 TGTTGGAAGCGGCTGCATA 60.003 52.632 21.93 0.00 46.23 3.14
4846 10660 2.282391 TGTTGGAAGCGGCTGCAT 60.282 55.556 21.93 7.93 46.23 3.96
4847 10661 3.286751 GTGTTGGAAGCGGCTGCA 61.287 61.111 21.93 0.00 46.23 4.41
4848 10662 2.980233 AGTGTTGGAAGCGGCTGC 60.980 61.111 10.33 10.33 43.24 5.25
4849 10663 2.949106 CAGTGTTGGAAGCGGCTG 59.051 61.111 1.81 0.00 0.00 4.85
4850 10664 2.980233 GCAGTGTTGGAAGCGGCT 60.980 61.111 0.00 0.00 0.00 5.52
4851 10665 4.043200 GGCAGTGTTGGAAGCGGC 62.043 66.667 0.00 0.00 0.00 6.53
4852 10666 3.365265 GGGCAGTGTTGGAAGCGG 61.365 66.667 0.00 0.00 0.00 5.52
4853 10667 2.133742 CTTGGGCAGTGTTGGAAGCG 62.134 60.000 0.00 0.00 0.00 4.68
4854 10668 1.109323 ACTTGGGCAGTGTTGGAAGC 61.109 55.000 0.00 0.00 32.83 3.86
4855 10669 0.954452 GACTTGGGCAGTGTTGGAAG 59.046 55.000 0.00 0.00 35.01 3.46
4856 10670 0.550914 AGACTTGGGCAGTGTTGGAA 59.449 50.000 0.00 0.00 35.01 3.53
4857 10671 0.108585 GAGACTTGGGCAGTGTTGGA 59.891 55.000 0.00 0.00 35.01 3.53
4858 10672 0.109342 AGAGACTTGGGCAGTGTTGG 59.891 55.000 0.00 0.00 35.01 3.77
4859 10673 1.605710 CAAGAGACTTGGGCAGTGTTG 59.394 52.381 0.00 0.00 35.01 3.33
4860 10674 1.490490 TCAAGAGACTTGGGCAGTGTT 59.510 47.619 10.84 0.00 35.01 3.32
4861 10675 1.071385 CTCAAGAGACTTGGGCAGTGT 59.929 52.381 10.84 0.00 35.01 3.55
4862 10676 1.610102 CCTCAAGAGACTTGGGCAGTG 60.610 57.143 10.84 0.00 35.01 3.66
4863 10677 0.689623 CCTCAAGAGACTTGGGCAGT 59.310 55.000 10.84 0.00 39.07 4.40
4864 10678 0.979665 TCCTCAAGAGACTTGGGCAG 59.020 55.000 10.84 2.70 0.00 4.85
4865 10679 0.979665 CTCCTCAAGAGACTTGGGCA 59.020 55.000 10.84 0.00 46.50 5.36
4866 10680 0.980423 ACTCCTCAAGAGACTTGGGC 59.020 55.000 10.84 0.00 46.50 5.36
4867 10681 2.634940 TGAACTCCTCAAGAGACTTGGG 59.365 50.000 10.84 7.85 46.50 4.12
4868 10682 3.864160 GCTGAACTCCTCAAGAGACTTGG 60.864 52.174 10.84 3.30 46.50 3.61
4869 10683 3.244009 TGCTGAACTCCTCAAGAGACTTG 60.244 47.826 5.29 5.29 46.50 3.16
4870 10684 2.968574 TGCTGAACTCCTCAAGAGACTT 59.031 45.455 0.00 0.00 46.50 3.01
4871 10685 2.603021 TGCTGAACTCCTCAAGAGACT 58.397 47.619 0.00 0.00 46.50 3.24
4872 10686 3.608316 ATGCTGAACTCCTCAAGAGAC 57.392 47.619 0.00 0.00 46.50 3.36
4873 10687 3.326006 ACAATGCTGAACTCCTCAAGAGA 59.674 43.478 0.00 0.00 46.50 3.10
4875 10689 3.777106 ACAATGCTGAACTCCTCAAGA 57.223 42.857 0.00 0.00 32.17 3.02
4876 10690 4.153117 GTGTACAATGCTGAACTCCTCAAG 59.847 45.833 0.00 0.00 32.17 3.02
4877 10691 4.065088 GTGTACAATGCTGAACTCCTCAA 58.935 43.478 0.00 0.00 32.17 3.02
4878 10692 3.324846 AGTGTACAATGCTGAACTCCTCA 59.675 43.478 0.00 0.00 0.00 3.86
4879 10693 3.681897 CAGTGTACAATGCTGAACTCCTC 59.318 47.826 10.76 0.00 32.39 3.71
4880 10694 3.668447 CAGTGTACAATGCTGAACTCCT 58.332 45.455 10.76 0.00 32.39 3.69
4890 10704 3.902261 TTCAAGCTGCAGTGTACAATG 57.098 42.857 18.64 18.64 0.00 2.82
4891 10705 3.366679 GCATTCAAGCTGCAGTGTACAAT 60.367 43.478 16.64 0.00 39.46 2.71
4892 10706 2.030893 GCATTCAAGCTGCAGTGTACAA 60.031 45.455 16.64 2.75 39.46 2.41
4893 10707 1.536766 GCATTCAAGCTGCAGTGTACA 59.463 47.619 16.64 0.00 39.46 2.90
4894 10708 1.135575 GGCATTCAAGCTGCAGTGTAC 60.136 52.381 16.64 0.00 41.47 2.90
4895 10709 1.167851 GGCATTCAAGCTGCAGTGTA 58.832 50.000 16.64 0.47 41.47 2.90
4896 10710 0.538977 AGGCATTCAAGCTGCAGTGT 60.539 50.000 16.64 0.00 41.47 3.55
4897 10711 0.601558 AAGGCATTCAAGCTGCAGTG 59.398 50.000 16.64 6.80 41.47 3.66
4898 10712 1.815003 GTAAGGCATTCAAGCTGCAGT 59.185 47.619 16.64 0.00 41.47 4.40
4899 10713 1.133790 GGTAAGGCATTCAAGCTGCAG 59.866 52.381 10.11 10.11 41.47 4.41
4900 10714 1.176527 GGTAAGGCATTCAAGCTGCA 58.823 50.000 1.02 0.00 41.47 4.41
4901 10715 1.133790 CTGGTAAGGCATTCAAGCTGC 59.866 52.381 0.00 0.00 38.93 5.25
4902 10716 1.747355 CCTGGTAAGGCATTCAAGCTG 59.253 52.381 0.00 0.00 36.56 4.24
4903 10717 2.134789 CCTGGTAAGGCATTCAAGCT 57.865 50.000 0.00 0.00 36.56 3.74
4957 10771 7.492344 CCGCATATTCTTGCATGACTGTATATA 59.508 37.037 1.02 0.00 42.91 0.86
4994 10808 3.764972 CTCCTTAAGAGACTCGGGAAGTT 59.235 47.826 3.36 0.00 46.50 2.66
5097 10911 9.015367 TCGAATGTAATTGTTTTCTTGGGAATA 57.985 29.630 0.00 0.00 36.07 1.75
5221 11099 7.557719 CCATCAGAAATACCATCAACCTTAACT 59.442 37.037 0.00 0.00 0.00 2.24
5232 11131 5.018809 ACAAGCAACCATCAGAAATACCAT 58.981 37.500 0.00 0.00 0.00 3.55
5237 11136 8.370182 AGAAAAATACAAGCAACCATCAGAAAT 58.630 29.630 0.00 0.00 0.00 2.17
5270 11172 1.270839 ACGCAGCTGACAGTTACCAAT 60.271 47.619 20.43 0.00 0.00 3.16
5316 11247 0.534412 TAGCAAGAGTCTGGCAGCTC 59.466 55.000 21.72 22.99 31.78 4.09
5322 11253 5.236047 GCATGTAGATTTAGCAAGAGTCTGG 59.764 44.000 0.00 0.00 0.00 3.86
5364 11295 8.391106 CAAAGTAGATAAAATCCAACGAAGAGG 58.609 37.037 0.00 0.00 0.00 3.69
5365 11296 8.391106 CCAAAGTAGATAAAATCCAACGAAGAG 58.609 37.037 0.00 0.00 0.00 2.85
5544 11500 8.358895 TCGTTCCACGTTATTACATCCATAATA 58.641 33.333 0.00 0.00 43.14 0.98
5545 11501 7.211573 TCGTTCCACGTTATTACATCCATAAT 58.788 34.615 0.00 0.00 43.14 1.28
5546 11502 6.571605 TCGTTCCACGTTATTACATCCATAA 58.428 36.000 0.00 0.00 43.14 1.90
5720 12682 0.846693 ATGTGGCCCCTGATTCCTAC 59.153 55.000 0.00 0.00 0.00 3.18
5892 12870 0.189574 TTTCCCCTGAATGCCCAACA 59.810 50.000 0.00 0.00 0.00 3.33
5908 12886 1.862806 GCCGTGTGAGAGCACTTTC 59.137 57.895 0.00 0.00 45.36 2.62
5911 12889 4.363990 CCGCCGTGTGAGAGCACT 62.364 66.667 0.00 0.00 45.36 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.