Multiple sequence alignment - TraesCS7B01G426500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G426500 chr7B 100.000 3218 0 0 1 3218 695907478 695910695 0.000000e+00 5943.0
1 TraesCS7B01G426500 chr7B 88.700 1885 185 14 996 2867 697422825 697424694 0.000000e+00 2276.0
2 TraesCS7B01G426500 chr7B 88.531 1831 167 18 939 2750 697120343 697118537 0.000000e+00 2178.0
3 TraesCS7B01G426500 chr7B 87.827 1758 175 15 1001 2737 697615805 697614066 0.000000e+00 2025.0
4 TraesCS7B01G426500 chr7B 84.620 1814 243 19 943 2739 695502368 695500574 0.000000e+00 1772.0
5 TraesCS7B01G426500 chr7B 82.190 1662 237 36 1005 2640 92959502 92961130 0.000000e+00 1375.0
6 TraesCS7B01G426500 chr7B 82.771 1451 215 20 1001 2445 697034010 697035431 0.000000e+00 1262.0
7 TraesCS7B01G426500 chr7B 93.705 699 28 6 1 689 60201749 60201057 0.000000e+00 1033.0
8 TraesCS7B01G426500 chr7B 94.713 435 13 3 1 426 60242254 60241821 0.000000e+00 667.0
9 TraesCS7B01G426500 chr7B 84.568 486 58 9 2738 3215 685050402 685050878 1.750000e-127 466.0
10 TraesCS7B01G426500 chr7B 85.417 432 47 11 2792 3215 694267056 694267479 4.930000e-118 435.0
11 TraesCS7B01G426500 chr7B 91.954 261 16 3 429 689 60241495 60241240 8.490000e-96 361.0
12 TraesCS7B01G426500 chr7D 87.580 1570 165 14 996 2552 608727508 608729060 0.000000e+00 1792.0
13 TraesCS7B01G426500 chr7D 84.285 1839 242 21 923 2729 608116542 608114719 0.000000e+00 1751.0
14 TraesCS7B01G426500 chr7D 94.648 355 13 2 2550 2899 608730565 608730918 2.180000e-151 545.0
15 TraesCS7B01G426500 chr7D 96.454 282 9 1 2618 2899 608721119 608721399 6.290000e-127 464.0
16 TraesCS7B01G426500 chr7D 85.845 438 52 4 2275 2703 83293548 83293112 1.050000e-124 457.0
17 TraesCS7B01G426500 chr7D 85.343 423 49 9 2738 3152 83292963 83292546 2.970000e-115 425.0
18 TraesCS7B01G426500 chr7A 90.976 1230 88 15 1998 3215 700103572 700104790 0.000000e+00 1635.0
19 TraesCS7B01G426500 chr7A 82.037 1659 241 35 1005 2640 130383458 130385082 0.000000e+00 1360.0
20 TraesCS7B01G426500 chr7A 84.245 1060 126 18 1702 2739 699925412 699926452 0.000000e+00 994.0
21 TraesCS7B01G426500 chr7A 85.616 438 53 4 2275 2703 225971586 225972022 4.900000e-123 451.0
22 TraesCS7B01G426500 chr7A 85.078 449 43 14 2778 3218 700090277 700089845 1.370000e-118 436.0
23 TraesCS7B01G426500 chr7A 85.579 423 48 9 2738 3152 225972172 225972589 6.380000e-117 431.0
24 TraesCS7B01G426500 chr7A 86.318 402 41 10 2738 3134 699926485 699926877 2.970000e-115 425.0
25 TraesCS7B01G426500 chr7A 81.527 406 53 16 1 391 470794735 470795133 6.700000e-82 315.0
26 TraesCS7B01G426500 chr7A 95.161 62 3 0 695 756 39501332 39501271 7.350000e-17 99.0
27 TraesCS7B01G426500 chrUn 85.875 1508 185 11 1001 2495 77772829 77774321 0.000000e+00 1580.0
28 TraesCS7B01G426500 chr1D 91.810 464 17 7 1 448 413873851 413873393 7.580000e-176 627.0
29 TraesCS7B01G426500 chr6A 85.106 423 50 9 2738 3152 252108630 252108213 1.380000e-113 420.0
30 TraesCS7B01G426500 chr6A 88.060 67 4 3 691 753 510796310 510796244 3.440000e-10 76.8
31 TraesCS7B01G426500 chr2A 95.000 60 3 0 692 751 17221825 17221884 9.500000e-16 95.3
32 TraesCS7B01G426500 chr2A 90.164 61 3 3 691 749 755121888 755121947 3.440000e-10 76.8
33 TraesCS7B01G426500 chr4A 95.000 60 1 2 695 753 662640163 662640105 3.420000e-15 93.5
34 TraesCS7B01G426500 chr4A 92.063 63 5 0 691 753 6054961 6055023 4.420000e-14 89.8
35 TraesCS7B01G426500 chr2D 95.082 61 0 3 692 751 651424421 651424479 3.420000e-15 93.5
36 TraesCS7B01G426500 chr1A 96.000 50 2 0 691 740 171597793 171597744 7.400000e-12 82.4
37 TraesCS7B01G426500 chr4D 88.525 61 5 2 685 744 415201031 415200972 4.450000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G426500 chr7B 695907478 695910695 3217 False 5943.0 5943 100.0000 1 3218 1 chr7B.!!$F4 3217
1 TraesCS7B01G426500 chr7B 697422825 697424694 1869 False 2276.0 2276 88.7000 996 2867 1 chr7B.!!$F6 1871
2 TraesCS7B01G426500 chr7B 697118537 697120343 1806 True 2178.0 2178 88.5310 939 2750 1 chr7B.!!$R3 1811
3 TraesCS7B01G426500 chr7B 697614066 697615805 1739 True 2025.0 2025 87.8270 1001 2737 1 chr7B.!!$R4 1736
4 TraesCS7B01G426500 chr7B 695500574 695502368 1794 True 1772.0 1772 84.6200 943 2739 1 chr7B.!!$R2 1796
5 TraesCS7B01G426500 chr7B 92959502 92961130 1628 False 1375.0 1375 82.1900 1005 2640 1 chr7B.!!$F1 1635
6 TraesCS7B01G426500 chr7B 697034010 697035431 1421 False 1262.0 1262 82.7710 1001 2445 1 chr7B.!!$F5 1444
7 TraesCS7B01G426500 chr7B 60201057 60201749 692 True 1033.0 1033 93.7050 1 689 1 chr7B.!!$R1 688
8 TraesCS7B01G426500 chr7B 60241240 60242254 1014 True 514.0 667 93.3335 1 689 2 chr7B.!!$R5 688
9 TraesCS7B01G426500 chr7D 608114719 608116542 1823 True 1751.0 1751 84.2850 923 2729 1 chr7D.!!$R1 1806
10 TraesCS7B01G426500 chr7D 608727508 608730918 3410 False 1168.5 1792 91.1140 996 2899 2 chr7D.!!$F2 1903
11 TraesCS7B01G426500 chr7D 83292546 83293548 1002 True 441.0 457 85.5940 2275 3152 2 chr7D.!!$R2 877
12 TraesCS7B01G426500 chr7A 700103572 700104790 1218 False 1635.0 1635 90.9760 1998 3215 1 chr7A.!!$F3 1217
13 TraesCS7B01G426500 chr7A 130383458 130385082 1624 False 1360.0 1360 82.0370 1005 2640 1 chr7A.!!$F1 1635
14 TraesCS7B01G426500 chr7A 699925412 699926877 1465 False 709.5 994 85.2815 1702 3134 2 chr7A.!!$F5 1432
15 TraesCS7B01G426500 chr7A 225971586 225972589 1003 False 441.0 451 85.5975 2275 3152 2 chr7A.!!$F4 877
16 TraesCS7B01G426500 chrUn 77772829 77774321 1492 False 1580.0 1580 85.8750 1001 2495 1 chrUn.!!$F1 1494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 877 0.109458 TAGACACACGGACATGCGAC 60.109 55.0 0.0 0.0 0.0 5.19 F
869 1202 0.179032 TCGGCAGCACAAAGGAAAGA 60.179 50.0 0.0 0.0 0.0 2.52 F
901 1234 0.469892 AATCCCAATCCCAATCCCGC 60.470 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1529 1885 0.605319 GAATGTTGTCACTCCCGCCA 60.605 55.000 0.0 0.0 0.0 5.69 R
1852 2217 1.303643 CTTCCCCTGCCTCCACAAC 60.304 63.158 0.0 0.0 0.0 3.32 R
2365 2745 1.346395 ACACAGTAATGTTCCCGAGCA 59.654 47.619 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 224 9.860898 AAGCCTCATACAAATTTACAATTCTTC 57.139 29.630 0.00 0.00 0.00 2.87
255 256 8.424274 AACTGAATCTTCAAACAATCCAAAAC 57.576 30.769 0.00 0.00 36.64 2.43
313 314 4.265856 AGGAAAAGGAAAGAAACCTGGT 57.734 40.909 0.00 0.00 37.85 4.00
391 392 0.469917 CATCCCTGAACCGGCTGTAT 59.530 55.000 0.00 0.00 0.00 2.29
392 393 1.691976 CATCCCTGAACCGGCTGTATA 59.308 52.381 0.00 0.00 0.00 1.47
393 394 2.097110 TCCCTGAACCGGCTGTATAT 57.903 50.000 0.00 0.00 0.00 0.86
426 436 4.771356 CAGCTGCATGGCGTGTGC 62.771 66.667 15.48 15.48 42.81 4.57
477 810 4.078537 TGGGTTGTCGATGAAATCAATGT 58.921 39.130 0.00 0.00 45.97 2.71
536 869 4.777463 TCTGATATGAGTAGACACACGGA 58.223 43.478 0.00 0.00 0.00 4.69
539 872 4.887655 TGATATGAGTAGACACACGGACAT 59.112 41.667 0.00 0.00 0.00 3.06
541 874 1.067846 TGAGTAGACACACGGACATGC 60.068 52.381 0.00 0.00 0.00 4.06
544 877 0.109458 TAGACACACGGACATGCGAC 60.109 55.000 0.00 0.00 0.00 5.19
570 903 2.797278 CGAACAGCCGGCCTAGGAT 61.797 63.158 26.15 5.00 0.00 3.24
575 908 0.603975 CAGCCGGCCTAGGATAAAGC 60.604 60.000 26.15 7.28 0.00 3.51
576 909 1.054406 AGCCGGCCTAGGATAAAGCA 61.054 55.000 26.15 0.00 0.00 3.91
577 910 0.885150 GCCGGCCTAGGATAAAGCAC 60.885 60.000 18.11 0.00 0.00 4.40
578 911 0.250338 CCGGCCTAGGATAAAGCACC 60.250 60.000 14.75 0.00 0.00 5.01
579 912 0.600255 CGGCCTAGGATAAAGCACCG 60.600 60.000 14.75 9.48 0.00 4.94
586 919 3.149005 AGGATAAAGCACCGGACAAAA 57.851 42.857 9.46 0.00 0.00 2.44
591 924 5.699001 GGATAAAGCACCGGACAAAATTTTT 59.301 36.000 9.46 0.00 0.00 1.94
594 927 3.634283 AGCACCGGACAAAATTTTTACG 58.366 40.909 9.46 6.23 0.00 3.18
689 1022 1.234615 GCTGCTAGTCCGCAACCAAA 61.235 55.000 0.00 0.00 39.80 3.28
690 1023 0.798776 CTGCTAGTCCGCAACCAAAG 59.201 55.000 0.00 0.00 39.80 2.77
691 1024 0.394938 TGCTAGTCCGCAACCAAAGA 59.605 50.000 0.00 0.00 36.89 2.52
692 1025 0.796927 GCTAGTCCGCAACCAAAGAC 59.203 55.000 0.00 0.00 0.00 3.01
693 1026 1.068474 CTAGTCCGCAACCAAAGACG 58.932 55.000 0.00 0.00 34.41 4.18
694 1027 0.675083 TAGTCCGCAACCAAAGACGA 59.325 50.000 0.00 0.00 34.41 4.20
695 1028 0.179067 AGTCCGCAACCAAAGACGAA 60.179 50.000 0.00 0.00 34.41 3.85
696 1029 0.658897 GTCCGCAACCAAAGACGAAA 59.341 50.000 0.00 0.00 0.00 3.46
697 1030 1.064357 GTCCGCAACCAAAGACGAAAA 59.936 47.619 0.00 0.00 0.00 2.29
698 1031 1.743958 TCCGCAACCAAAGACGAAAAA 59.256 42.857 0.00 0.00 0.00 1.94
719 1052 6.665992 AAAAGGTAGAAAAACAATCCTCCC 57.334 37.500 0.00 0.00 0.00 4.30
720 1053 5.600669 AAGGTAGAAAAACAATCCTCCCT 57.399 39.130 0.00 0.00 0.00 4.20
721 1054 5.600669 AGGTAGAAAAACAATCCTCCCTT 57.399 39.130 0.00 0.00 0.00 3.95
722 1055 5.965486 AGGTAGAAAAACAATCCTCCCTTT 58.035 37.500 0.00 0.00 0.00 3.11
723 1056 7.098845 AGGTAGAAAAACAATCCTCCCTTTA 57.901 36.000 0.00 0.00 0.00 1.85
724 1057 7.532199 AGGTAGAAAAACAATCCTCCCTTTAA 58.468 34.615 0.00 0.00 0.00 1.52
725 1058 8.177456 AGGTAGAAAAACAATCCTCCCTTTAAT 58.823 33.333 0.00 0.00 0.00 1.40
726 1059 9.470399 GGTAGAAAAACAATCCTCCCTTTAATA 57.530 33.333 0.00 0.00 0.00 0.98
735 1068 9.684702 ACAATCCTCCCTTTAATATTAGGTAGA 57.315 33.333 4.01 1.80 0.00 2.59
759 1092 9.778741 AGAGATAGAGAGTAGAGATAAACAGTG 57.221 37.037 0.00 0.00 0.00 3.66
760 1093 9.555727 GAGATAGAGAGTAGAGATAAACAGTGT 57.444 37.037 0.00 0.00 0.00 3.55
763 1096 7.562454 AGAGAGTAGAGATAAACAGTGTAGC 57.438 40.000 0.00 0.00 0.00 3.58
764 1097 7.113437 AGAGAGTAGAGATAAACAGTGTAGCA 58.887 38.462 0.00 0.00 0.00 3.49
765 1098 7.777910 AGAGAGTAGAGATAAACAGTGTAGCAT 59.222 37.037 0.00 0.00 0.00 3.79
766 1099 8.299990 AGAGTAGAGATAAACAGTGTAGCATT 57.700 34.615 0.00 0.00 0.00 3.56
767 1100 8.754080 AGAGTAGAGATAAACAGTGTAGCATTT 58.246 33.333 0.00 0.00 0.00 2.32
768 1101 9.372369 GAGTAGAGATAAACAGTGTAGCATTTT 57.628 33.333 0.00 0.00 0.00 1.82
769 1102 9.726438 AGTAGAGATAAACAGTGTAGCATTTTT 57.274 29.630 0.00 0.00 0.00 1.94
792 1125 4.364415 TTTTGCTGTAGCGTTTTGAACT 57.636 36.364 0.00 0.00 45.83 3.01
793 1126 4.364415 TTTGCTGTAGCGTTTTGAACTT 57.636 36.364 0.00 0.00 45.83 2.66
794 1127 4.364415 TTGCTGTAGCGTTTTGAACTTT 57.636 36.364 0.00 0.00 45.83 2.66
795 1128 4.364415 TGCTGTAGCGTTTTGAACTTTT 57.636 36.364 0.00 0.00 45.83 2.27
796 1129 4.739195 TGCTGTAGCGTTTTGAACTTTTT 58.261 34.783 0.00 0.00 45.83 1.94
826 1159 3.205815 ACGGCCCGTTATACCTACA 57.794 52.632 1.02 0.00 36.35 2.74
827 1160 0.746659 ACGGCCCGTTATACCTACAC 59.253 55.000 1.02 0.00 36.35 2.90
828 1161 0.746063 CGGCCCGTTATACCTACACA 59.254 55.000 0.00 0.00 0.00 3.72
829 1162 1.269413 CGGCCCGTTATACCTACACAG 60.269 57.143 0.00 0.00 0.00 3.66
830 1163 1.758862 GGCCCGTTATACCTACACAGT 59.241 52.381 0.00 0.00 0.00 3.55
831 1164 2.223900 GGCCCGTTATACCTACACAGTC 60.224 54.545 0.00 0.00 0.00 3.51
832 1165 2.692041 GCCCGTTATACCTACACAGTCT 59.308 50.000 0.00 0.00 0.00 3.24
833 1166 3.131755 GCCCGTTATACCTACACAGTCTT 59.868 47.826 0.00 0.00 0.00 3.01
834 1167 4.679662 CCCGTTATACCTACACAGTCTTG 58.320 47.826 0.00 0.00 0.00 3.02
835 1168 4.110482 CCGTTATACCTACACAGTCTTGC 58.890 47.826 0.00 0.00 0.00 4.01
836 1169 4.142227 CCGTTATACCTACACAGTCTTGCT 60.142 45.833 0.00 0.00 0.00 3.91
853 1186 2.183409 CTGACCAAGCCCATTTCGG 58.817 57.895 0.00 0.00 0.00 4.30
861 1194 3.364442 CCCATTTCGGCAGCACAA 58.636 55.556 0.00 0.00 0.00 3.33
862 1195 1.664873 CCCATTTCGGCAGCACAAA 59.335 52.632 0.00 0.00 0.00 2.83
863 1196 0.388907 CCCATTTCGGCAGCACAAAG 60.389 55.000 0.00 0.00 0.00 2.77
864 1197 0.388907 CCATTTCGGCAGCACAAAGG 60.389 55.000 0.00 0.00 0.00 3.11
865 1198 0.597568 CATTTCGGCAGCACAAAGGA 59.402 50.000 0.00 0.00 0.00 3.36
866 1199 1.000385 CATTTCGGCAGCACAAAGGAA 60.000 47.619 0.00 0.00 0.00 3.36
867 1200 1.107114 TTTCGGCAGCACAAAGGAAA 58.893 45.000 0.00 0.00 0.00 3.13
868 1201 0.667993 TTCGGCAGCACAAAGGAAAG 59.332 50.000 0.00 0.00 0.00 2.62
869 1202 0.179032 TCGGCAGCACAAAGGAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
870 1203 0.667993 CGGCAGCACAAAGGAAAGAA 59.332 50.000 0.00 0.00 0.00 2.52
871 1204 1.066908 CGGCAGCACAAAGGAAAGAAA 59.933 47.619 0.00 0.00 0.00 2.52
872 1205 2.481104 CGGCAGCACAAAGGAAAGAAAA 60.481 45.455 0.00 0.00 0.00 2.29
873 1206 2.866156 GGCAGCACAAAGGAAAGAAAAC 59.134 45.455 0.00 0.00 0.00 2.43
874 1207 3.520569 GCAGCACAAAGGAAAGAAAACA 58.479 40.909 0.00 0.00 0.00 2.83
875 1208 3.306973 GCAGCACAAAGGAAAGAAAACAC 59.693 43.478 0.00 0.00 0.00 3.32
876 1209 4.747810 CAGCACAAAGGAAAGAAAACACT 58.252 39.130 0.00 0.00 0.00 3.55
877 1210 4.800471 CAGCACAAAGGAAAGAAAACACTC 59.200 41.667 0.00 0.00 0.00 3.51
878 1211 4.112634 GCACAAAGGAAAGAAAACACTCC 58.887 43.478 0.00 0.00 0.00 3.85
879 1212 4.682787 CACAAAGGAAAGAAAACACTCCC 58.317 43.478 0.00 0.00 0.00 4.30
880 1213 3.380320 ACAAAGGAAAGAAAACACTCCCG 59.620 43.478 0.00 0.00 0.00 5.14
881 1214 3.570912 AAGGAAAGAAAACACTCCCGA 57.429 42.857 0.00 0.00 0.00 5.14
882 1215 3.570912 AGGAAAGAAAACACTCCCGAA 57.429 42.857 0.00 0.00 0.00 4.30
883 1216 3.893521 AGGAAAGAAAACACTCCCGAAA 58.106 40.909 0.00 0.00 0.00 3.46
884 1217 4.470602 AGGAAAGAAAACACTCCCGAAAT 58.529 39.130 0.00 0.00 0.00 2.17
885 1218 4.519350 AGGAAAGAAAACACTCCCGAAATC 59.481 41.667 0.00 0.00 0.00 2.17
886 1219 4.321008 GGAAAGAAAACACTCCCGAAATCC 60.321 45.833 0.00 0.00 0.00 3.01
887 1220 2.791655 AGAAAACACTCCCGAAATCCC 58.208 47.619 0.00 0.00 0.00 3.85
888 1221 2.107552 AGAAAACACTCCCGAAATCCCA 59.892 45.455 0.00 0.00 0.00 4.37
889 1222 2.668144 AAACACTCCCGAAATCCCAA 57.332 45.000 0.00 0.00 0.00 4.12
890 1223 2.899303 AACACTCCCGAAATCCCAAT 57.101 45.000 0.00 0.00 0.00 3.16
891 1224 2.420058 ACACTCCCGAAATCCCAATC 57.580 50.000 0.00 0.00 0.00 2.67
892 1225 1.064685 ACACTCCCGAAATCCCAATCC 60.065 52.381 0.00 0.00 0.00 3.01
893 1226 0.551396 ACTCCCGAAATCCCAATCCC 59.449 55.000 0.00 0.00 0.00 3.85
894 1227 0.550914 CTCCCGAAATCCCAATCCCA 59.449 55.000 0.00 0.00 0.00 4.37
895 1228 1.003646 TCCCGAAATCCCAATCCCAA 58.996 50.000 0.00 0.00 0.00 4.12
896 1229 1.573376 TCCCGAAATCCCAATCCCAAT 59.427 47.619 0.00 0.00 0.00 3.16
897 1230 1.963515 CCCGAAATCCCAATCCCAATC 59.036 52.381 0.00 0.00 0.00 2.67
898 1231 1.963515 CCGAAATCCCAATCCCAATCC 59.036 52.381 0.00 0.00 0.00 3.01
899 1232 1.963515 CGAAATCCCAATCCCAATCCC 59.036 52.381 0.00 0.00 0.00 3.85
900 1233 1.963515 GAAATCCCAATCCCAATCCCG 59.036 52.381 0.00 0.00 0.00 5.14
901 1234 0.469892 AATCCCAATCCCAATCCCGC 60.470 55.000 0.00 0.00 0.00 6.13
902 1235 1.654137 ATCCCAATCCCAATCCCGCA 61.654 55.000 0.00 0.00 0.00 5.69
903 1236 1.152483 CCCAATCCCAATCCCGCAT 60.152 57.895 0.00 0.00 0.00 4.73
904 1237 1.181098 CCCAATCCCAATCCCGCATC 61.181 60.000 0.00 0.00 0.00 3.91
905 1238 1.518056 CCAATCCCAATCCCGCATCG 61.518 60.000 0.00 0.00 0.00 3.84
906 1239 1.898574 AATCCCAATCCCGCATCGC 60.899 57.895 0.00 0.00 0.00 4.58
907 1240 3.850098 ATCCCAATCCCGCATCGCC 62.850 63.158 0.00 0.00 0.00 5.54
911 1244 4.935495 AATCCCGCATCGCCGCAT 62.935 61.111 0.00 0.00 0.00 4.73
912 1245 3.529341 AATCCCGCATCGCCGCATA 62.529 57.895 0.00 0.00 0.00 3.14
913 1246 4.961511 TCCCGCATCGCCGCATAC 62.962 66.667 0.00 0.00 0.00 2.39
915 1248 3.268603 CCGCATCGCCGCATACAA 61.269 61.111 0.00 0.00 0.00 2.41
916 1249 2.246397 CGCATCGCCGCATACAAG 59.754 61.111 0.00 0.00 0.00 3.16
917 1250 2.051882 GCATCGCCGCATACAAGC 60.052 61.111 0.00 0.00 0.00 4.01
918 1251 2.633657 CATCGCCGCATACAAGCC 59.366 61.111 0.00 0.00 0.00 4.35
919 1252 2.967076 ATCGCCGCATACAAGCCG 60.967 61.111 0.00 0.00 0.00 5.52
953 1286 1.529309 GCACCTCCTCTTCCCATCC 59.471 63.158 0.00 0.00 0.00 3.51
1036 1378 1.686110 GACATCCCGGACCACCTCT 60.686 63.158 0.73 0.00 0.00 3.69
1050 1392 1.065854 CACCTCTTGGCCGAGATCTTT 60.066 52.381 23.49 5.15 36.63 2.52
1059 1401 1.319541 CCGAGATCTTTCTCCGGCTA 58.680 55.000 6.84 0.00 44.76 3.93
1062 1404 2.312390 GAGATCTTTCTCCGGCTACCT 58.688 52.381 0.00 0.00 42.26 3.08
1066 1408 1.187087 CTTTCTCCGGCTACCTGACT 58.813 55.000 0.00 0.00 0.00 3.41
1140 1482 2.754658 GACGGCTCCTTCCTCCGA 60.755 66.667 6.91 0.00 45.53 4.55
1158 1500 2.666596 GAAGATTCCGCCGCCTCCAT 62.667 60.000 0.00 0.00 0.00 3.41
1661 2020 2.492088 GTTGGAGTGATTTGGCCCTTAC 59.508 50.000 0.00 0.00 0.00 2.34
1759 2118 1.077716 GACTGGGTGGAATTCGGGG 60.078 63.158 0.00 0.00 0.00 5.73
1762 2121 2.274432 GGGTGGAATTCGGGGTCC 59.726 66.667 0.00 0.00 0.00 4.46
1852 2217 1.486726 ACAAGGAAGGAGGAATAGCCG 59.513 52.381 0.00 0.00 43.43 5.52
1910 2275 6.739331 TGGTTTCCATGGTAAAACTTCATT 57.261 33.333 21.87 0.00 36.01 2.57
1991 2356 6.478512 AGAGAAGACAATCCCACTAGATTC 57.521 41.667 0.00 0.00 34.19 2.52
1992 2357 6.201591 AGAGAAGACAATCCCACTAGATTCT 58.798 40.000 0.00 0.00 34.19 2.40
1993 2358 6.098124 AGAGAAGACAATCCCACTAGATTCTG 59.902 42.308 0.00 0.00 34.19 3.02
1994 2359 5.130145 AGAAGACAATCCCACTAGATTCTGG 59.870 44.000 0.00 0.00 34.19 3.86
2034 2399 1.649321 TCAGAGATGCAACCCAGAGT 58.351 50.000 0.00 0.00 0.00 3.24
2067 2435 1.338337 ACAAGGATAGACGCCTCATCG 59.662 52.381 0.00 0.00 33.76 3.84
2129 2497 3.681897 GTCAAGACGTTGCAGATTCAGAT 59.318 43.478 0.00 0.00 33.23 2.90
2199 2567 4.661222 TCAACTTTCCACCATCATTGCTA 58.339 39.130 0.00 0.00 0.00 3.49
2212 2580 5.469421 CCATCATTGCTATCTTCAAGGAGAC 59.531 44.000 0.00 0.00 37.60 3.36
2219 2587 6.810911 TGCTATCTTCAAGGAGACTATGAAC 58.189 40.000 0.00 0.00 42.68 3.18
2278 2648 9.793252 CTTCCCTTTAAAATTATCACATGACTG 57.207 33.333 0.00 0.00 0.00 3.51
2365 2745 8.535335 TCTTATGCTCATGAGAAAACTAAGAGT 58.465 33.333 27.04 0.00 31.57 3.24
2454 2853 7.295952 AGTAAGAGAAATAATCTTGTGCACG 57.704 36.000 13.13 0.00 38.96 5.34
2455 2854 7.097192 AGTAAGAGAAATAATCTTGTGCACGA 58.903 34.615 13.13 9.87 38.96 4.35
2899 4965 2.941064 CCTCAGTATCATGGTTGTGCTG 59.059 50.000 0.00 0.00 0.00 4.41
2947 5013 5.529060 GGTTGAGATGACTGACTGAAACTTT 59.471 40.000 0.00 0.00 0.00 2.66
2948 5014 6.425504 GTTGAGATGACTGACTGAAACTTTG 58.574 40.000 0.00 0.00 0.00 2.77
2975 5044 6.817765 TTCAGGTGATTGTATTGTTTCTCC 57.182 37.500 0.00 0.00 0.00 3.71
2990 5059 0.320374 TCTCCTTGCTACCAACACCG 59.680 55.000 0.00 0.00 0.00 4.94
3016 5092 7.308649 GCCAGTTTCTTTCTTTTCCTTAGTAGG 60.309 40.741 0.00 0.00 43.46 3.18
3064 5140 4.708726 GCAGTAAATGAACTCCTGCAAT 57.291 40.909 5.16 0.00 45.94 3.56
3074 5150 4.263905 TGAACTCCTGCAATACCAATTCCT 60.264 41.667 0.00 0.00 0.00 3.36
3096 5172 6.936900 TCCTTATGAGTTTTTCTGGACTGAAG 59.063 38.462 0.00 0.00 0.00 3.02
3179 5255 1.342496 CTGAAGTGAGTGTCTGCCTGA 59.658 52.381 0.00 0.00 0.00 3.86
3181 5257 2.369860 TGAAGTGAGTGTCTGCCTGAAT 59.630 45.455 0.00 0.00 0.00 2.57
3188 5264 4.020307 TGAGTGTCTGCCTGAATTCACATA 60.020 41.667 3.38 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.472137 ACTGAAATTTTACAGTACCGCATGT 59.528 36.000 10.04 0.00 44.06 3.21
255 256 8.850454 TCCGTTTTCTTTTTAAATCAGACAAG 57.150 30.769 0.00 0.00 0.00 3.16
391 392 3.891977 AGCTGCGTGAGGAAGAAGATATA 59.108 43.478 0.00 0.00 0.00 0.86
392 393 2.697751 AGCTGCGTGAGGAAGAAGATAT 59.302 45.455 0.00 0.00 0.00 1.63
393 394 2.103373 AGCTGCGTGAGGAAGAAGATA 58.897 47.619 0.00 0.00 0.00 1.98
536 869 2.202743 CGTCCATCCGTCGCATGT 60.203 61.111 0.00 0.00 0.00 3.21
539 872 2.126228 GTTCGTCCATCCGTCGCA 60.126 61.111 0.00 0.00 0.00 5.10
541 874 2.158959 GCTGTTCGTCCATCCGTCG 61.159 63.158 0.00 0.00 0.00 5.12
544 877 2.885644 CGGCTGTTCGTCCATCCG 60.886 66.667 5.31 5.31 37.72 4.18
570 903 5.686397 CGTAAAAATTTTGTCCGGTGCTTTA 59.314 36.000 3.73 0.00 0.00 1.85
575 908 6.466730 GCTATACGTAAAAATTTTGTCCGGTG 59.533 38.462 3.73 1.93 0.00 4.94
576 909 6.372381 AGCTATACGTAAAAATTTTGTCCGGT 59.628 34.615 3.73 2.02 0.00 5.28
577 910 6.778108 AGCTATACGTAAAAATTTTGTCCGG 58.222 36.000 3.73 0.00 0.00 5.14
578 911 9.925268 ATTAGCTATACGTAAAAATTTTGTCCG 57.075 29.630 3.73 9.46 0.00 4.79
620 953 6.932960 AGCTATACGTTGTTGGTAGAAAAAGT 59.067 34.615 0.00 0.00 0.00 2.66
695 1028 6.844388 AGGGAGGATTGTTTTTCTACCTTTTT 59.156 34.615 0.00 0.00 37.27 1.94
696 1029 6.382087 AGGGAGGATTGTTTTTCTACCTTTT 58.618 36.000 0.00 0.00 37.27 2.27
697 1030 5.965486 AGGGAGGATTGTTTTTCTACCTTT 58.035 37.500 0.00 0.00 37.27 3.11
698 1031 5.600669 AGGGAGGATTGTTTTTCTACCTT 57.399 39.130 0.00 0.00 37.27 3.50
699 1032 5.600669 AAGGGAGGATTGTTTTTCTACCT 57.399 39.130 0.00 0.00 42.08 3.08
700 1033 7.770366 TTAAAGGGAGGATTGTTTTTCTACC 57.230 36.000 0.00 0.00 0.00 3.18
709 1042 9.684702 TCTACCTAATATTAAAGGGAGGATTGT 57.315 33.333 14.27 0.00 43.22 2.71
733 1066 9.778741 CACTGTTTATCTCTACTCTCTATCTCT 57.221 37.037 0.00 0.00 0.00 3.10
734 1067 9.555727 ACACTGTTTATCTCTACTCTCTATCTC 57.444 37.037 0.00 0.00 0.00 2.75
737 1070 9.280174 GCTACACTGTTTATCTCTACTCTCTAT 57.720 37.037 0.00 0.00 0.00 1.98
738 1071 8.265764 TGCTACACTGTTTATCTCTACTCTCTA 58.734 37.037 0.00 0.00 0.00 2.43
739 1072 7.113437 TGCTACACTGTTTATCTCTACTCTCT 58.887 38.462 0.00 0.00 0.00 3.10
740 1073 7.323049 TGCTACACTGTTTATCTCTACTCTC 57.677 40.000 0.00 0.00 0.00 3.20
741 1074 7.889873 ATGCTACACTGTTTATCTCTACTCT 57.110 36.000 0.00 0.00 0.00 3.24
742 1075 8.934507 AAATGCTACACTGTTTATCTCTACTC 57.065 34.615 0.00 0.00 0.00 2.59
743 1076 9.726438 AAAAATGCTACACTGTTTATCTCTACT 57.274 29.630 0.00 0.00 0.00 2.57
770 1103 4.739195 AGTTCAAAACGCTACAGCAAAAA 58.261 34.783 1.61 0.00 42.21 1.94
771 1104 4.364415 AGTTCAAAACGCTACAGCAAAA 57.636 36.364 1.61 0.00 42.21 2.44
772 1105 4.364415 AAGTTCAAAACGCTACAGCAAA 57.636 36.364 1.61 0.00 42.21 3.68
773 1106 4.364415 AAAGTTCAAAACGCTACAGCAA 57.636 36.364 1.61 0.00 42.21 3.91
774 1107 4.364415 AAAAGTTCAAAACGCTACAGCA 57.636 36.364 1.61 0.00 42.21 4.41
793 1126 1.883926 GGCCGTTCTTCTGCCTAAAAA 59.116 47.619 0.00 0.00 42.07 1.94
794 1127 1.530323 GGCCGTTCTTCTGCCTAAAA 58.470 50.000 0.00 0.00 42.07 1.52
795 1128 0.322187 GGGCCGTTCTTCTGCCTAAA 60.322 55.000 0.00 0.00 44.25 1.85
796 1129 1.298667 GGGCCGTTCTTCTGCCTAA 59.701 57.895 0.00 0.00 44.25 2.69
797 1130 2.987125 GGGCCGTTCTTCTGCCTA 59.013 61.111 0.00 0.00 44.25 3.93
798 1131 4.394712 CGGGCCGTTCTTCTGCCT 62.395 66.667 19.97 0.00 44.25 4.75
799 1132 4.699522 ACGGGCCGTTCTTCTGCC 62.700 66.667 28.83 0.00 44.11 4.85
808 1141 0.746659 GTGTAGGTATAACGGGCCGT 59.253 55.000 28.83 28.83 43.97 5.68
809 1142 0.746063 TGTGTAGGTATAACGGGCCG 59.254 55.000 27.06 27.06 0.00 6.13
810 1143 1.758862 ACTGTGTAGGTATAACGGGCC 59.241 52.381 0.00 0.00 0.00 5.80
811 1144 2.692041 AGACTGTGTAGGTATAACGGGC 59.308 50.000 0.00 0.00 0.00 6.13
812 1145 4.679662 CAAGACTGTGTAGGTATAACGGG 58.320 47.826 0.00 0.00 0.00 5.28
813 1146 4.110482 GCAAGACTGTGTAGGTATAACGG 58.890 47.826 0.00 0.00 0.00 4.44
814 1147 4.798907 CAGCAAGACTGTGTAGGTATAACG 59.201 45.833 0.00 0.00 41.86 3.18
835 1168 2.183409 CCGAAATGGGCTTGGTCAG 58.817 57.895 0.00 0.00 0.00 3.51
836 1169 4.413928 CCGAAATGGGCTTGGTCA 57.586 55.556 0.00 0.00 0.00 4.02
844 1177 0.388907 CTTTGTGCTGCCGAAATGGG 60.389 55.000 0.00 0.00 38.63 4.00
845 1178 0.388907 CCTTTGTGCTGCCGAAATGG 60.389 55.000 0.00 0.00 42.50 3.16
846 1179 0.597568 TCCTTTGTGCTGCCGAAATG 59.402 50.000 0.00 0.00 0.00 2.32
847 1180 1.327303 TTCCTTTGTGCTGCCGAAAT 58.673 45.000 0.00 0.00 0.00 2.17
848 1181 1.066908 CTTTCCTTTGTGCTGCCGAAA 59.933 47.619 0.00 0.00 0.00 3.46
849 1182 0.667993 CTTTCCTTTGTGCTGCCGAA 59.332 50.000 0.00 0.00 0.00 4.30
850 1183 0.179032 TCTTTCCTTTGTGCTGCCGA 60.179 50.000 0.00 0.00 0.00 5.54
851 1184 0.667993 TTCTTTCCTTTGTGCTGCCG 59.332 50.000 0.00 0.00 0.00 5.69
852 1185 2.866156 GTTTTCTTTCCTTTGTGCTGCC 59.134 45.455 0.00 0.00 0.00 4.85
853 1186 3.306973 GTGTTTTCTTTCCTTTGTGCTGC 59.693 43.478 0.00 0.00 0.00 5.25
854 1187 4.747810 AGTGTTTTCTTTCCTTTGTGCTG 58.252 39.130 0.00 0.00 0.00 4.41
855 1188 4.142160 GGAGTGTTTTCTTTCCTTTGTGCT 60.142 41.667 0.00 0.00 0.00 4.40
856 1189 4.112634 GGAGTGTTTTCTTTCCTTTGTGC 58.887 43.478 0.00 0.00 0.00 4.57
857 1190 4.682787 GGGAGTGTTTTCTTTCCTTTGTG 58.317 43.478 0.00 0.00 0.00 3.33
858 1191 3.380320 CGGGAGTGTTTTCTTTCCTTTGT 59.620 43.478 0.00 0.00 0.00 2.83
859 1192 3.630312 TCGGGAGTGTTTTCTTTCCTTTG 59.370 43.478 0.00 0.00 0.00 2.77
860 1193 3.893521 TCGGGAGTGTTTTCTTTCCTTT 58.106 40.909 0.00 0.00 0.00 3.11
861 1194 3.570912 TCGGGAGTGTTTTCTTTCCTT 57.429 42.857 0.00 0.00 0.00 3.36
862 1195 3.570912 TTCGGGAGTGTTTTCTTTCCT 57.429 42.857 0.00 0.00 0.00 3.36
863 1196 4.321008 GGATTTCGGGAGTGTTTTCTTTCC 60.321 45.833 0.00 0.00 0.00 3.13
864 1197 4.321008 GGGATTTCGGGAGTGTTTTCTTTC 60.321 45.833 0.00 0.00 0.00 2.62
865 1198 3.572682 GGGATTTCGGGAGTGTTTTCTTT 59.427 43.478 0.00 0.00 0.00 2.52
866 1199 3.154710 GGGATTTCGGGAGTGTTTTCTT 58.845 45.455 0.00 0.00 0.00 2.52
867 1200 2.107552 TGGGATTTCGGGAGTGTTTTCT 59.892 45.455 0.00 0.00 0.00 2.52
868 1201 2.510613 TGGGATTTCGGGAGTGTTTTC 58.489 47.619 0.00 0.00 0.00 2.29
869 1202 2.668144 TGGGATTTCGGGAGTGTTTT 57.332 45.000 0.00 0.00 0.00 2.43
870 1203 2.668144 TTGGGATTTCGGGAGTGTTT 57.332 45.000 0.00 0.00 0.00 2.83
871 1204 2.620627 GGATTGGGATTTCGGGAGTGTT 60.621 50.000 0.00 0.00 0.00 3.32
872 1205 1.064685 GGATTGGGATTTCGGGAGTGT 60.065 52.381 0.00 0.00 0.00 3.55
873 1206 1.680338 GGATTGGGATTTCGGGAGTG 58.320 55.000 0.00 0.00 0.00 3.51
874 1207 0.551396 GGGATTGGGATTTCGGGAGT 59.449 55.000 0.00 0.00 0.00 3.85
875 1208 0.550914 TGGGATTGGGATTTCGGGAG 59.449 55.000 0.00 0.00 0.00 4.30
876 1209 1.003646 TTGGGATTGGGATTTCGGGA 58.996 50.000 0.00 0.00 0.00 5.14
877 1210 1.963515 GATTGGGATTGGGATTTCGGG 59.036 52.381 0.00 0.00 0.00 5.14
878 1211 1.963515 GGATTGGGATTGGGATTTCGG 59.036 52.381 0.00 0.00 0.00 4.30
879 1212 1.963515 GGGATTGGGATTGGGATTTCG 59.036 52.381 0.00 0.00 0.00 3.46
880 1213 1.963515 CGGGATTGGGATTGGGATTTC 59.036 52.381 0.00 0.00 0.00 2.17
881 1214 2.034268 GCGGGATTGGGATTGGGATTT 61.034 52.381 0.00 0.00 0.00 2.17
882 1215 0.469892 GCGGGATTGGGATTGGGATT 60.470 55.000 0.00 0.00 0.00 3.01
883 1216 1.153756 GCGGGATTGGGATTGGGAT 59.846 57.895 0.00 0.00 0.00 3.85
884 1217 1.654137 ATGCGGGATTGGGATTGGGA 61.654 55.000 0.00 0.00 0.00 4.37
885 1218 1.152483 ATGCGGGATTGGGATTGGG 60.152 57.895 0.00 0.00 0.00 4.12
886 1219 1.518056 CGATGCGGGATTGGGATTGG 61.518 60.000 0.00 0.00 0.00 3.16
887 1220 1.951510 CGATGCGGGATTGGGATTG 59.048 57.895 0.00 0.00 0.00 2.67
888 1221 1.898574 GCGATGCGGGATTGGGATT 60.899 57.895 0.00 0.00 0.00 3.01
889 1222 2.281761 GCGATGCGGGATTGGGAT 60.282 61.111 0.00 0.00 0.00 3.85
890 1223 4.562425 GGCGATGCGGGATTGGGA 62.562 66.667 0.00 0.00 0.00 4.37
894 1227 3.529341 TATGCGGCGATGCGGGATT 62.529 57.895 12.98 0.00 40.00 3.01
895 1228 4.002506 TATGCGGCGATGCGGGAT 62.003 61.111 12.98 8.27 41.83 3.85
896 1229 4.961511 GTATGCGGCGATGCGGGA 62.962 66.667 12.98 0.00 37.81 5.14
898 1231 3.227372 CTTGTATGCGGCGATGCGG 62.227 63.158 12.98 0.00 37.81 5.69
899 1232 2.246397 CTTGTATGCGGCGATGCG 59.754 61.111 12.98 0.00 37.81 4.73
900 1233 2.051882 GCTTGTATGCGGCGATGC 60.052 61.111 12.98 5.76 0.00 3.91
901 1234 2.633657 GGCTTGTATGCGGCGATG 59.366 61.111 12.98 0.00 0.00 3.84
929 1262 3.959991 GAAGAGGAGGTGCGGGTGC 62.960 68.421 0.00 0.00 43.20 5.01
931 1264 3.003763 GGAAGAGGAGGTGCGGGT 61.004 66.667 0.00 0.00 0.00 5.28
934 1267 1.144936 GATGGGAAGAGGAGGTGCG 59.855 63.158 0.00 0.00 0.00 5.34
937 1270 1.383248 CGGGATGGGAAGAGGAGGT 60.383 63.158 0.00 0.00 0.00 3.85
1050 1392 1.451567 CGAGTCAGGTAGCCGGAGA 60.452 63.158 5.05 0.00 0.00 3.71
1059 1401 0.961358 CGAGGTCTTCCGAGTCAGGT 60.961 60.000 0.00 0.00 39.05 4.00
1062 1404 0.959372 GGACGAGGTCTTCCGAGTCA 60.959 60.000 13.46 0.00 42.31 3.41
1140 1482 2.746375 ATGGAGGCGGCGGAATCTT 61.746 57.895 9.78 0.00 0.00 2.40
1158 1500 1.561769 ATCCGAGGATTGGTGGTGCA 61.562 55.000 0.00 0.00 41.84 4.57
1257 1599 1.476477 AGGAGAAGTAGAAGTCGGCC 58.524 55.000 0.00 0.00 0.00 6.13
1335 1677 2.761559 TCTTTTTCGATGTCGCCTTCA 58.238 42.857 0.00 0.00 39.60 3.02
1407 1755 2.753043 GGGAGCAGGACGTACCGA 60.753 66.667 0.00 0.00 44.74 4.69
1430 1778 2.490217 CGGCTAGGTCGTGAGGTG 59.510 66.667 0.00 0.00 0.00 4.00
1529 1885 0.605319 GAATGTTGTCACTCCCGCCA 60.605 55.000 0.00 0.00 0.00 5.69
1538 1894 5.857268 TCAAGATCACTCTGAATGTTGTCA 58.143 37.500 0.00 0.00 0.00 3.58
1759 2118 1.889545 AGCAAGAGCAACTTCTGGAC 58.110 50.000 0.00 0.00 45.49 4.02
1762 2121 2.615447 TGTCAAGCAAGAGCAACTTCTG 59.385 45.455 0.00 0.00 45.49 3.02
1852 2217 1.303643 CTTCCCCTGCCTCCACAAC 60.304 63.158 0.00 0.00 0.00 3.32
1910 2275 5.059161 GTGCAATGGTATAGCTGAGATTGA 58.941 41.667 13.80 1.33 0.00 2.57
1968 2333 6.098124 CAGAATCTAGTGGGATTGTCTTCTCT 59.902 42.308 0.00 0.00 36.24 3.10
1991 2356 5.373812 AAAATATCTGTACCCAGTCCCAG 57.626 43.478 0.00 0.00 39.82 4.45
1992 2357 6.617784 TGATAAAATATCTGTACCCAGTCCCA 59.382 38.462 0.00 0.00 39.82 4.37
1993 2358 7.016268 TCTGATAAAATATCTGTACCCAGTCCC 59.984 40.741 0.00 0.00 39.82 4.46
1994 2359 7.963532 TCTGATAAAATATCTGTACCCAGTCC 58.036 38.462 0.00 0.00 39.82 3.85
1995 2360 8.861086 TCTCTGATAAAATATCTGTACCCAGTC 58.139 37.037 0.00 0.00 39.82 3.51
1996 2361 8.783660 TCTCTGATAAAATATCTGTACCCAGT 57.216 34.615 0.00 0.00 39.82 4.00
2034 2399 6.398918 GTCTATCCTTGTGAAGAGCAAGTAA 58.601 40.000 0.00 0.00 41.08 2.24
2067 2435 5.589452 TCCAGTAAGTCGATCCTTTAGAGAC 59.411 44.000 0.00 0.00 0.00 3.36
2129 2497 8.786826 ACGATAATTCTGTTTCTCATAAACCA 57.213 30.769 0.00 0.00 0.00 3.67
2199 2567 7.251321 ACAAGTTCATAGTCTCCTTGAAGAT 57.749 36.000 0.00 0.00 36.79 2.40
2212 2580 9.167311 AGCAATAGAAACCTTACAAGTTCATAG 57.833 33.333 0.00 0.00 0.00 2.23
2219 2587 6.817765 TGGAAGCAATAGAAACCTTACAAG 57.182 37.500 0.00 0.00 0.00 3.16
2278 2648 7.365741 CCATAATGAACATGAAGCAATAGACC 58.634 38.462 0.00 0.00 0.00 3.85
2352 2732 2.897969 TCCCGAGCACTCTTAGTTTTCT 59.102 45.455 0.00 0.00 0.00 2.52
2365 2745 1.346395 ACACAGTAATGTTCCCGAGCA 59.654 47.619 0.00 0.00 0.00 4.26
2454 2853 3.999663 GACTCATGCATAAGCTACCCATC 59.000 47.826 0.00 0.00 42.74 3.51
2455 2854 3.244700 GGACTCATGCATAAGCTACCCAT 60.245 47.826 0.00 0.00 42.74 4.00
2518 2948 3.994392 TGACCATCAAAACTACTTCTCGC 59.006 43.478 0.00 0.00 0.00 5.03
2648 4593 3.600388 ACTTTTCTGCCTCCTTACATCG 58.400 45.455 0.00 0.00 0.00 3.84
2705 4653 7.172190 CAGGTTTATCTCGAAATAGCATCACAT 59.828 37.037 0.00 0.00 0.00 3.21
2899 4965 6.921857 CCAATATGATTTGCCTTGAGATTCAC 59.078 38.462 0.00 0.00 0.00 3.18
2947 5013 7.502226 AGAAACAATACAATCACCTGAAACTCA 59.498 33.333 0.00 0.00 0.00 3.41
2948 5014 7.875971 AGAAACAATACAATCACCTGAAACTC 58.124 34.615 0.00 0.00 0.00 3.01
2975 5044 1.577328 CTGGCGGTGTTGGTAGCAAG 61.577 60.000 7.79 0.00 0.00 4.01
2990 5059 6.392625 ACTAAGGAAAAGAAAGAAACTGGC 57.607 37.500 0.00 0.00 0.00 4.85
3016 5092 7.045126 AGGCACACTCTATCAGTATAAGAAC 57.955 40.000 0.00 0.00 32.21 3.01
3064 5140 8.167392 TCCAGAAAAACTCATAAGGAATTGGTA 58.833 33.333 0.00 0.00 0.00 3.25
3074 5150 7.730364 GACTTCAGTCCAGAAAAACTCATAA 57.270 36.000 0.00 0.00 39.07 1.90
3096 5172 4.095483 CAGAGGCACATGAACATAAAGGAC 59.905 45.833 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.