Multiple sequence alignment - TraesCS7B01G425400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G425400 chr7B 100.000 4306 0 0 1 4306 694262701 694267006 0.000000e+00 7952.0
1 TraesCS7B01G425400 chr7B 90.098 1838 109 24 228 2010 695950413 695948594 0.000000e+00 2318.0
2 TraesCS7B01G425400 chr7B 91.835 1531 93 10 501 2010 684954092 684952573 0.000000e+00 2106.0
3 TraesCS7B01G425400 chr7B 92.503 1454 70 15 584 2010 697048052 697049493 0.000000e+00 2045.0
4 TraesCS7B01G425400 chr7B 79.966 1163 193 27 428 1562 695359017 695360167 0.000000e+00 821.0
5 TraesCS7B01G425400 chr7B 77.335 1456 262 42 421 1827 697615843 697614407 0.000000e+00 798.0
6 TraesCS7B01G425400 chr7B 77.314 1415 249 51 465 1829 697120267 697118875 0.000000e+00 769.0
7 TraesCS7B01G425400 chr7B 91.684 481 31 5 3833 4306 697614569 697614091 0.000000e+00 658.0
8 TraesCS7B01G425400 chr7B 78.863 932 162 23 412 1325 697804336 697803422 7.970000e-167 597.0
9 TraesCS7B01G425400 chr7B 77.919 865 106 45 2901 3712 695710292 695711124 1.090000e-125 460.0
10 TraesCS7B01G425400 chr7B 79.037 706 109 33 421 1099 685013195 685013888 8.490000e-122 448.0
11 TraesCS7B01G425400 chr7B 78.898 635 88 25 3029 3640 695948267 695947656 5.220000e-104 388.0
12 TraesCS7B01G425400 chr7B 79.825 570 67 25 3251 3795 695648286 695648832 5.260000e-99 372.0
13 TraesCS7B01G425400 chr7B 77.155 731 86 43 3120 3795 697127027 697126323 2.460000e-92 350.0
14 TraesCS7B01G425400 chr7B 77.912 498 77 16 3028 3499 697049821 697050311 3.280000e-71 279.0
15 TraesCS7B01G425400 chr7B 90.323 155 13 2 2007 2160 697125971 697125818 7.300000e-48 202.0
16 TraesCS7B01G425400 chr7B 92.308 130 8 1 1883 2010 697644374 697644245 2.640000e-42 183.0
17 TraesCS7B01G425400 chr7B 91.597 119 9 1 2007 2124 695649184 695649302 3.450000e-36 163.0
18 TraesCS7B01G425400 chr7A 91.848 3729 189 39 197 3843 699935409 699939104 0.000000e+00 5096.0
19 TraesCS7B01G425400 chr7A 78.373 1401 251 35 465 1830 700160748 700159365 0.000000e+00 861.0
20 TraesCS7B01G425400 chr7A 92.873 463 29 4 3847 4306 700029771 700030232 0.000000e+00 669.0
21 TraesCS7B01G425400 chr7A 91.176 442 36 3 3864 4302 225971586 225972027 7.970000e-167 597.0
22 TraesCS7B01G425400 chr7A 82.759 232 29 7 3444 3674 700536446 700536667 3.400000e-46 196.0
23 TraesCS7B01G425400 chr7A 82.456 228 33 7 2135 2358 699980339 699980563 4.390000e-45 193.0
24 TraesCS7B01G425400 chr7A 78.879 232 39 9 3283 3509 700071768 700071542 9.650000e-32 148.0
25 TraesCS7B01G425400 chr7A 97.143 35 1 0 3130 3164 700066973 700066939 4.650000e-05 60.2
26 TraesCS7B01G425400 chr7A 100.000 31 0 0 71 101 467851818 467851848 1.670000e-04 58.4
27 TraesCS7B01G425400 chr7D 90.006 1631 113 14 422 2010 609904888 609906510 0.000000e+00 2063.0
28 TraesCS7B01G425400 chr7D 90.702 1140 88 6 422 1552 609899984 609901114 0.000000e+00 1502.0
29 TraesCS7B01G425400 chr7D 88.280 529 57 5 2007 2533 607938583 607939108 2.830000e-176 628.0
30 TraesCS7B01G425400 chr7D 91.403 442 35 3 3864 4302 83293548 83293107 1.710000e-168 603.0
31 TraesCS7B01G425400 chr7D 91.449 421 34 2 3864 4282 587479394 587478974 1.040000e-160 577.0
32 TraesCS7B01G425400 chr7D 91.211 421 35 2 3864 4282 594250955 594250535 4.830000e-159 571.0
33 TraesCS7B01G425400 chr7D 92.340 235 14 2 1778 2010 607937064 607937296 8.930000e-87 331.0
34 TraesCS7B01G425400 chr7D 77.716 359 53 13 3012 3348 607941399 607941752 1.220000e-45 195.0
35 TraesCS7B01G425400 chr7D 75.735 272 51 10 3289 3552 609941344 609941608 5.850000e-24 122.0
36 TraesCS7B01G425400 chrUn 77.571 1449 268 41 421 1830 77772791 77774221 0.000000e+00 822.0
37 TraesCS7B01G425400 chr5B 91.026 468 30 7 3384 3843 482137485 482137948 4.730000e-174 621.0
38 TraesCS7B01G425400 chr6A 90.498 442 38 4 3864 4302 252109215 252108775 8.030000e-162 580.0
39 TraesCS7B01G425400 chr2D 91.449 421 34 2 3864 4282 418426489 418426069 1.040000e-160 577.0
40 TraesCS7B01G425400 chr1D 91.211 421 35 2 3864 4282 353386523 353386943 4.830000e-159 571.0
41 TraesCS7B01G425400 chr3B 95.763 118 5 0 3384 3501 661975577 661975460 1.580000e-44 191.0
42 TraesCS7B01G425400 chr3B 96.491 114 4 0 3388 3501 356022932 356022819 5.680000e-44 189.0
43 TraesCS7B01G425400 chr3B 97.059 34 1 0 72 105 130644532 130644499 1.670000e-04 58.4
44 TraesCS7B01G425400 chr5D 97.143 35 1 0 66 100 565751107 565751073 4.650000e-05 60.2
45 TraesCS7B01G425400 chr2B 100.000 31 0 0 74 104 1261930 1261960 1.670000e-04 58.4
46 TraesCS7B01G425400 chr2B 92.308 39 3 0 66 104 94514647 94514609 6.020000e-04 56.5
47 TraesCS7B01G425400 chr2B 96.970 33 1 0 72 104 735759985 735759953 6.020000e-04 56.5
48 TraesCS7B01G425400 chr4D 100.000 30 0 0 72 101 389092138 389092167 6.020000e-04 56.5
49 TraesCS7B01G425400 chr4B 96.970 33 1 0 72 104 82163465 82163433 6.020000e-04 56.5
50 TraesCS7B01G425400 chr3D 92.308 39 1 2 75 113 516197359 516197323 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G425400 chr7B 694262701 694267006 4305 False 7952.000000 7952 100.0000 1 4306 1 chr7B.!!$F2 4305
1 TraesCS7B01G425400 chr7B 684952573 684954092 1519 True 2106.000000 2106 91.8350 501 2010 1 chr7B.!!$R1 1509
2 TraesCS7B01G425400 chr7B 695947656 695950413 2757 True 1353.000000 2318 84.4980 228 3640 2 chr7B.!!$R5 3412
3 TraesCS7B01G425400 chr7B 697048052 697050311 2259 False 1162.000000 2045 85.2075 584 3499 2 chr7B.!!$F6 2915
4 TraesCS7B01G425400 chr7B 695359017 695360167 1150 False 821.000000 821 79.9660 428 1562 1 chr7B.!!$F3 1134
5 TraesCS7B01G425400 chr7B 697118875 697120267 1392 True 769.000000 769 77.3140 465 1829 1 chr7B.!!$R2 1364
6 TraesCS7B01G425400 chr7B 697614091 697615843 1752 True 728.000000 798 84.5095 421 4306 2 chr7B.!!$R7 3885
7 TraesCS7B01G425400 chr7B 697803422 697804336 914 True 597.000000 597 78.8630 412 1325 1 chr7B.!!$R4 913
8 TraesCS7B01G425400 chr7B 695710292 695711124 832 False 460.000000 460 77.9190 2901 3712 1 chr7B.!!$F4 811
9 TraesCS7B01G425400 chr7B 685013195 685013888 693 False 448.000000 448 79.0370 421 1099 1 chr7B.!!$F1 678
10 TraesCS7B01G425400 chr7B 697125818 697127027 1209 True 276.000000 350 83.7390 2007 3795 2 chr7B.!!$R6 1788
11 TraesCS7B01G425400 chr7B 695648286 695649302 1016 False 267.500000 372 85.7110 2007 3795 2 chr7B.!!$F5 1788
12 TraesCS7B01G425400 chr7A 699935409 699939104 3695 False 5096.000000 5096 91.8480 197 3843 1 chr7A.!!$F3 3646
13 TraesCS7B01G425400 chr7A 700159365 700160748 1383 True 861.000000 861 78.3730 465 1830 1 chr7A.!!$R3 1365
14 TraesCS7B01G425400 chr7D 609899984 609906510 6526 False 1782.500000 2063 90.3540 422 2010 2 chr7D.!!$F3 1588
15 TraesCS7B01G425400 chr7D 607937064 607941752 4688 False 384.666667 628 86.1120 1778 3348 3 chr7D.!!$F2 1570
16 TraesCS7B01G425400 chrUn 77772791 77774221 1430 False 822.000000 822 77.5710 421 1830 1 chrUn.!!$F1 1409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.044244 CCTGGGGTCCTCCTCCTTTA 59.956 60.000 0.00 0.00 32.02 1.85 F
668 704 0.179073 CGGGTTCCATCCAGCACTAG 60.179 60.000 0.00 0.00 0.00 2.57 F
1051 1125 1.007734 GTGTTCTCGTCGAGCACCA 60.008 57.895 19.98 12.04 45.02 4.17 F
2778 8124 0.520404 CTGAATCGTGCTTGCTGCTT 59.480 50.000 0.00 0.00 43.37 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1051 1125 0.392729 GCAGCAGCTCTCCATTGTCT 60.393 55.000 0.00 0.00 37.91 3.41 R
1996 7334 2.295885 GCATTGCTGATAAGCACTCCT 58.704 47.619 3.48 0.00 45.32 3.69 R
2784 8130 1.066716 ACGCATCTTACGTAAAGCCCA 60.067 47.619 9.68 0.00 43.02 5.36 R
3741 9221 0.249447 CTGTCAGACACGTGAAGGCA 60.249 55.000 25.01 16.96 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.191641 GATGCAGAGCCTGGGGTC 59.808 66.667 10.48 10.48 42.36 4.46
18 19 3.412624 GATGCAGAGCCTGGGGTCC 62.413 68.421 14.27 2.32 42.97 4.46
19 20 3.958629 ATGCAGAGCCTGGGGTCCT 62.959 63.158 14.27 1.02 42.97 3.85
20 21 3.791586 GCAGAGCCTGGGGTCCTC 61.792 72.222 14.27 4.14 42.97 3.71
21 22 3.086600 CAGAGCCTGGGGTCCTCC 61.087 72.222 14.27 0.00 42.97 4.30
22 23 3.288381 AGAGCCTGGGGTCCTCCT 61.288 66.667 14.27 0.00 42.97 3.69
23 24 2.766229 GAGCCTGGGGTCCTCCTC 60.766 72.222 7.53 0.00 36.72 3.71
24 25 4.423209 AGCCTGGGGTCCTCCTCC 62.423 72.222 0.00 0.00 32.02 4.30
25 26 4.423209 GCCTGGGGTCCTCCTCCT 62.423 72.222 0.00 0.00 32.02 3.69
26 27 2.456840 CCTGGGGTCCTCCTCCTT 59.543 66.667 0.00 0.00 32.02 3.36
27 28 1.229984 CCTGGGGTCCTCCTCCTTT 60.230 63.158 0.00 0.00 32.02 3.11
28 29 0.044244 CCTGGGGTCCTCCTCCTTTA 59.956 60.000 0.00 0.00 32.02 1.85
29 30 1.557188 CCTGGGGTCCTCCTCCTTTAA 60.557 57.143 0.00 0.00 32.02 1.52
30 31 2.275466 CTGGGGTCCTCCTCCTTTAAA 58.725 52.381 0.00 0.00 32.02 1.52
31 32 2.647802 CTGGGGTCCTCCTCCTTTAAAA 59.352 50.000 0.00 0.00 32.02 1.52
32 33 3.065175 TGGGGTCCTCCTCCTTTAAAAA 58.935 45.455 0.00 0.00 32.02 1.94
69 70 7.880059 AAAGAATCAAATGAAGCTAACTTGC 57.120 32.000 0.00 0.00 35.82 4.01
70 71 5.634896 AGAATCAAATGAAGCTAACTTGCG 58.365 37.500 0.00 0.00 35.82 4.85
71 72 5.182001 AGAATCAAATGAAGCTAACTTGCGT 59.818 36.000 0.00 0.00 35.82 5.24
72 73 4.829064 TCAAATGAAGCTAACTTGCGTT 57.171 36.364 0.00 0.00 35.82 4.84
73 74 4.536065 TCAAATGAAGCTAACTTGCGTTG 58.464 39.130 0.00 0.00 35.82 4.10
74 75 4.036262 TCAAATGAAGCTAACTTGCGTTGT 59.964 37.500 0.00 0.00 35.82 3.32
75 76 5.237561 TCAAATGAAGCTAACTTGCGTTGTA 59.762 36.000 0.00 0.00 35.82 2.41
76 77 4.663636 ATGAAGCTAACTTGCGTTGTAC 57.336 40.909 0.00 0.00 35.82 2.90
77 78 3.724374 TGAAGCTAACTTGCGTTGTACT 58.276 40.909 0.00 0.00 35.82 2.73
78 79 3.739300 TGAAGCTAACTTGCGTTGTACTC 59.261 43.478 0.00 0.00 35.82 2.59
79 80 2.685100 AGCTAACTTGCGTTGTACTCC 58.315 47.619 0.00 0.00 38.13 3.85
80 81 1.730612 GCTAACTTGCGTTGTACTCCC 59.269 52.381 0.00 0.00 34.59 4.30
81 82 2.612221 GCTAACTTGCGTTGTACTCCCT 60.612 50.000 0.00 0.00 34.59 4.20
82 83 2.165319 AACTTGCGTTGTACTCCCTC 57.835 50.000 0.00 0.00 30.67 4.30
83 84 0.320697 ACTTGCGTTGTACTCCCTCC 59.679 55.000 0.00 0.00 0.00 4.30
84 85 0.320374 CTTGCGTTGTACTCCCTCCA 59.680 55.000 0.00 0.00 0.00 3.86
85 86 0.981183 TTGCGTTGTACTCCCTCCAT 59.019 50.000 0.00 0.00 0.00 3.41
86 87 0.535335 TGCGTTGTACTCCCTCCATC 59.465 55.000 0.00 0.00 0.00 3.51
87 88 0.179081 GCGTTGTACTCCCTCCATCC 60.179 60.000 0.00 0.00 0.00 3.51
88 89 0.464452 CGTTGTACTCCCTCCATCCC 59.536 60.000 0.00 0.00 0.00 3.85
89 90 1.580059 GTTGTACTCCCTCCATCCCA 58.420 55.000 0.00 0.00 0.00 4.37
90 91 2.127708 GTTGTACTCCCTCCATCCCAT 58.872 52.381 0.00 0.00 0.00 4.00
91 92 3.314693 GTTGTACTCCCTCCATCCCATA 58.685 50.000 0.00 0.00 0.00 2.74
92 93 3.714798 GTTGTACTCCCTCCATCCCATAA 59.285 47.826 0.00 0.00 0.00 1.90
93 94 4.228237 TGTACTCCCTCCATCCCATAAT 57.772 45.455 0.00 0.00 0.00 1.28
94 95 5.363124 TGTACTCCCTCCATCCCATAATA 57.637 43.478 0.00 0.00 0.00 0.98
95 96 5.927465 TGTACTCCCTCCATCCCATAATAT 58.073 41.667 0.00 0.00 0.00 1.28
96 97 7.063801 TGTACTCCCTCCATCCCATAATATA 57.936 40.000 0.00 0.00 0.00 0.86
97 98 7.492552 TGTACTCCCTCCATCCCATAATATAA 58.507 38.462 0.00 0.00 0.00 0.98
98 99 7.623677 TGTACTCCCTCCATCCCATAATATAAG 59.376 40.741 0.00 0.00 0.00 1.73
99 100 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
100 101 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
101 102 7.068679 TCCCTCCATCCCATAATATAAGAGA 57.931 40.000 0.00 0.00 0.00 3.10
102 103 7.135522 TCCCTCCATCCCATAATATAAGAGAG 58.864 42.308 0.00 0.00 0.00 3.20
103 104 6.905776 CCCTCCATCCCATAATATAAGAGAGT 59.094 42.308 0.00 0.00 0.00 3.24
104 105 8.068110 CCCTCCATCCCATAATATAAGAGAGTA 58.932 40.741 0.00 0.00 0.00 2.59
105 106 9.142014 CCTCCATCCCATAATATAAGAGAGTAG 57.858 40.741 0.00 0.00 0.00 2.57
106 107 8.540507 TCCATCCCATAATATAAGAGAGTAGC 57.459 38.462 0.00 0.00 0.00 3.58
107 108 8.347591 TCCATCCCATAATATAAGAGAGTAGCT 58.652 37.037 0.00 0.00 0.00 3.32
108 109 8.986991 CCATCCCATAATATAAGAGAGTAGCTT 58.013 37.037 0.00 0.00 0.00 3.74
142 143 9.634163 ATTTTCTAGTCAAAGTTTGAAACGTTT 57.366 25.926 19.63 14.57 42.15 3.60
143 144 8.442605 TTTCTAGTCAAAGTTTGAAACGTTTG 57.557 30.769 20.10 18.37 42.15 2.93
144 145 7.367159 TCTAGTCAAAGTTTGAAACGTTTGA 57.633 32.000 20.10 20.91 42.15 2.69
145 146 7.981142 TCTAGTCAAAGTTTGAAACGTTTGAT 58.019 30.769 24.33 18.74 42.15 2.57
146 147 8.120465 TCTAGTCAAAGTTTGAAACGTTTGATC 58.880 33.333 24.33 19.84 42.15 2.92
147 148 6.852664 AGTCAAAGTTTGAAACGTTTGATCT 58.147 32.000 24.33 20.89 42.15 2.75
148 149 7.981142 AGTCAAAGTTTGAAACGTTTGATCTA 58.019 30.769 24.33 0.00 42.15 1.98
149 150 8.122952 AGTCAAAGTTTGAAACGTTTGATCTAG 58.877 33.333 24.33 8.29 42.15 2.43
150 151 7.376072 GTCAAAGTTTGAAACGTTTGATCTAGG 59.624 37.037 24.33 7.69 42.15 3.02
151 152 7.281324 TCAAAGTTTGAAACGTTTGATCTAGGA 59.719 33.333 20.10 9.58 35.56 2.94
152 153 7.745620 AAGTTTGAAACGTTTGATCTAGGAT 57.254 32.000 20.10 0.00 36.23 3.24
153 154 8.842358 AAGTTTGAAACGTTTGATCTAGGATA 57.158 30.769 20.10 0.00 36.23 2.59
154 155 8.842358 AGTTTGAAACGTTTGATCTAGGATAA 57.158 30.769 20.10 0.00 36.23 1.75
155 156 9.280174 AGTTTGAAACGTTTGATCTAGGATAAA 57.720 29.630 20.10 0.00 36.23 1.40
158 159 9.667107 TTGAAACGTTTGATCTAGGATAAATCT 57.333 29.630 20.10 0.00 0.00 2.40
159 160 9.667107 TGAAACGTTTGATCTAGGATAAATCTT 57.333 29.630 20.10 0.00 0.00 2.40
224 225 9.880157 CTTTGATTAATTTGGAATGGATGAAGT 57.120 29.630 0.00 0.00 0.00 3.01
241 242 6.641723 GGATGAAGTACTAGTTATCTTTCGCC 59.358 42.308 0.00 3.80 0.00 5.54
244 247 7.380536 TGAAGTACTAGTTATCTTTCGCCAAA 58.619 34.615 0.00 0.00 0.00 3.28
461 493 2.061028 CGGCCAACAAGAAGAAAATGC 58.939 47.619 2.24 0.00 0.00 3.56
493 525 0.686441 CGGACATCCCTGACCACCTA 60.686 60.000 0.00 0.00 37.08 3.08
567 600 4.020617 CGCCTGCCTCACCTTCCA 62.021 66.667 0.00 0.00 0.00 3.53
668 704 0.179073 CGGGTTCCATCCAGCACTAG 60.179 60.000 0.00 0.00 0.00 2.57
736 772 4.837972 CCGATTTCTCCTTCTCTTTCCTT 58.162 43.478 0.00 0.00 0.00 3.36
818 854 2.824041 CCGAAATGGGCGAGGTGG 60.824 66.667 0.00 0.00 0.00 4.61
911 952 3.914024 GACCTAGTCGCTTCGGTAC 57.086 57.895 0.00 0.00 0.00 3.34
912 953 1.377536 GACCTAGTCGCTTCGGTACT 58.622 55.000 0.00 0.00 0.00 2.73
913 954 1.742268 GACCTAGTCGCTTCGGTACTT 59.258 52.381 0.00 0.00 0.00 2.24
914 955 1.742268 ACCTAGTCGCTTCGGTACTTC 59.258 52.381 0.00 0.00 0.00 3.01
1051 1125 1.007734 GTGTTCTCGTCGAGCACCA 60.008 57.895 19.98 12.04 45.02 4.17
1500 6518 6.784473 TGATAAGGACACCAGACATATCTCAT 59.216 38.462 0.00 0.00 30.42 2.90
1676 6707 8.098912 GTGGTAAAATCCTAGTTAACTCCTTCA 58.901 37.037 12.39 0.00 0.00 3.02
1822 6868 7.784633 AACATAATTGTGTTCCTTGTTTTGG 57.215 32.000 14.15 0.00 37.80 3.28
1934 7272 5.012664 TGGGTCACTGCTCTAAATAAGAACA 59.987 40.000 0.00 0.00 32.46 3.18
1996 7334 6.294899 CCTGAAATCAGCCTCAAAAGATCAAA 60.295 38.462 4.87 0.00 42.47 2.69
2060 7398 3.576078 ACAAAGGTGATCCACTGTGAA 57.424 42.857 9.86 0.00 34.40 3.18
2112 7450 7.621428 AACAACACTATCATCAGGAAGAATG 57.379 36.000 0.00 0.00 0.00 2.67
2160 7498 3.354089 AGACATTGTTTGCAGAAACCG 57.646 42.857 0.00 0.00 40.81 4.44
2228 7566 5.429762 TGGAATGATCTCTGGTCTGGTAATT 59.570 40.000 0.00 0.00 0.00 1.40
2250 7588 6.959639 TTCACCTTTCTTGCATTAGTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
2277 7615 9.469807 CTGTTCTCTTTAGTATATGTGGTGATC 57.530 37.037 0.00 0.00 0.00 2.92
2341 7679 5.123027 GGTGATGATCTCTTTCAGGACAAAC 59.877 44.000 0.00 0.00 0.00 2.93
2380 7718 5.938125 ACGTAGTATGTGAGCTTTGGAATTT 59.062 36.000 0.00 0.00 41.94 1.82
2538 7884 9.213799 GAGTCAATCTGTATGAAGAAGAGTTTT 57.786 33.333 0.00 0.00 0.00 2.43
2688 8034 0.806868 ATGTGTTGCTGCCAGATTCG 59.193 50.000 0.00 0.00 0.00 3.34
2740 8086 0.758685 TTTGGTTCAGGGGGTTGCTG 60.759 55.000 0.00 0.00 0.00 4.41
2745 8091 3.260100 CAGGGGGTTGCTGGGAGT 61.260 66.667 0.00 0.00 0.00 3.85
2775 8121 1.802960 AGTTCTGAATCGTGCTTGCTG 59.197 47.619 0.00 0.00 0.00 4.41
2778 8124 0.520404 CTGAATCGTGCTTGCTGCTT 59.480 50.000 0.00 0.00 43.37 3.91
2784 8130 2.426522 TCGTGCTTGCTGCTTAATTCT 58.573 42.857 0.00 0.00 43.37 2.40
2793 8139 3.443681 TGCTGCTTAATTCTGGGCTTTAC 59.556 43.478 0.00 0.00 0.00 2.01
2802 8148 2.901249 TCTGGGCTTTACGTAAGATGC 58.099 47.619 8.23 13.32 43.62 3.91
2823 8169 8.131100 AGATGCGTGATAATATGGTTTTTGAAG 58.869 33.333 0.00 0.00 0.00 3.02
2835 8181 6.824305 TGGTTTTTGAAGGAAAATTTTGCA 57.176 29.167 22.35 6.71 33.46 4.08
2883 8229 0.740149 CGCCCATCTATTTTGCAGCA 59.260 50.000 0.00 0.00 0.00 4.41
3008 8388 4.568072 TTCTGCCAGGTTGTGTATATGT 57.432 40.909 0.00 0.00 0.00 2.29
3016 8413 6.513180 CCAGGTTGTGTATATGTACTACCAG 58.487 44.000 19.14 14.04 33.64 4.00
3042 8439 9.362539 GTTCTGCATGATTAAGTTTTTCATGAT 57.637 29.630 22.33 0.00 46.16 2.45
3187 8598 5.469373 TTAGCAATGCGAGAATACTGTTG 57.531 39.130 0.00 0.00 0.00 3.33
3199 8610 1.429930 TACTGTTGTGCCTCTTCCCA 58.570 50.000 0.00 0.00 0.00 4.37
3308 8766 9.971922 CTTTCTTTATCTTGTTTGTCCAGATTT 57.028 29.630 0.00 0.00 0.00 2.17
3353 8811 8.347771 TCAGATTTCAGAGTTCAAAGTGATTTG 58.652 33.333 0.00 0.00 0.00 2.32
3389 8848 3.262660 TGGAGTTCTTGCTGATGTGATCT 59.737 43.478 0.00 0.00 0.00 2.75
3390 8849 3.870419 GGAGTTCTTGCTGATGTGATCTC 59.130 47.826 0.00 0.00 0.00 2.75
3412 8871 1.470632 CCTCTCTGACAAGATGGCGTC 60.471 57.143 0.00 0.00 0.00 5.19
3583 9046 3.103080 ACCAACAACTGTGGGGTAAAA 57.897 42.857 8.17 0.00 43.61 1.52
3593 9056 2.290071 TGTGGGGTAAAACTAGCTGCTC 60.290 50.000 4.91 0.00 0.00 4.26
3731 9211 0.183492 AGTCTCAAGCCAGGCAACAA 59.817 50.000 15.80 0.00 41.41 2.83
3746 9226 0.763986 AACAATGCTTGGGGTGCCTT 60.764 50.000 1.84 0.00 34.12 4.35
3792 9282 6.808008 TTCTTAGGAGATGCAGAAACAAAG 57.192 37.500 0.00 0.00 0.00 2.77
3794 9284 3.515602 AGGAGATGCAGAAACAAAGGT 57.484 42.857 0.00 0.00 0.00 3.50
3809 9307 6.976934 AACAAAGGTTATGAACAGTTCCAT 57.023 33.333 10.93 7.06 34.87 3.41
3811 9309 5.163513 CAAAGGTTATGAACAGTTCCATGC 58.836 41.667 10.93 0.00 0.00 4.06
3830 9328 5.395214 CCATGCCAGCGGTATATATTAGTCA 60.395 44.000 0.00 0.00 0.00 3.41
3836 9334 7.320399 CCAGCGGTATATATTAGTCATGTTCA 58.680 38.462 0.00 0.00 0.00 3.18
3837 9335 7.981789 CCAGCGGTATATATTAGTCATGTTCAT 59.018 37.037 0.00 0.00 0.00 2.57
3839 9337 8.972127 AGCGGTATATATTAGTCATGTTCATCT 58.028 33.333 0.00 0.00 0.00 2.90
3841 9339 9.737427 CGGTATATATTAGTCATGTTCATCTCC 57.263 37.037 0.00 0.00 0.00 3.71
3849 9347 4.080638 AGTCATGTTCATCTCCTTCCCTTC 60.081 45.833 0.00 0.00 0.00 3.46
3850 9348 3.845992 TCATGTTCATCTCCTTCCCTTCA 59.154 43.478 0.00 0.00 0.00 3.02
3851 9349 4.476113 TCATGTTCATCTCCTTCCCTTCAT 59.524 41.667 0.00 0.00 0.00 2.57
3852 9350 5.667172 TCATGTTCATCTCCTTCCCTTCATA 59.333 40.000 0.00 0.00 0.00 2.15
3853 9351 5.620738 TGTTCATCTCCTTCCCTTCATAG 57.379 43.478 0.00 0.00 0.00 2.23
3856 9354 6.672218 TGTTCATCTCCTTCCCTTCATAGTTA 59.328 38.462 0.00 0.00 0.00 2.24
3857 9355 7.348274 TGTTCATCTCCTTCCCTTCATAGTTAT 59.652 37.037 0.00 0.00 0.00 1.89
3860 9358 6.732896 TCTCCTTCCCTTCATAGTTATCAC 57.267 41.667 0.00 0.00 0.00 3.06
3861 9359 6.202331 TCTCCTTCCCTTCATAGTTATCACA 58.798 40.000 0.00 0.00 0.00 3.58
3862 9360 6.846505 TCTCCTTCCCTTCATAGTTATCACAT 59.153 38.462 0.00 0.00 0.00 3.21
3864 9362 6.615316 TCCTTCCCTTCATAGTTATCACATGA 59.385 38.462 0.00 0.00 0.00 3.07
3865 9363 6.708054 CCTTCCCTTCATAGTTATCACATGAC 59.292 42.308 0.00 0.00 0.00 3.06
3868 9366 7.275183 TCCCTTCATAGTTATCACATGACTTG 58.725 38.462 0.00 0.00 31.07 3.16
3870 9368 7.225538 CCCTTCATAGTTATCACATGACTTGTC 59.774 40.741 0.00 0.00 36.00 3.18
3884 9382 8.939929 CACATGACTTGTCTATTACTTCATGTT 58.060 33.333 10.76 0.00 43.57 2.71
3885 9383 9.507329 ACATGACTTGTCTATTACTTCATGTTT 57.493 29.630 0.00 0.00 43.57 2.83
3886 9384 9.764870 CATGACTTGTCTATTACTTCATGTTTG 57.235 33.333 2.35 0.00 36.64 2.93
3887 9385 8.902540 TGACTTGTCTATTACTTCATGTTTGT 57.097 30.769 2.35 0.00 0.00 2.83
3888 9386 9.337396 TGACTTGTCTATTACTTCATGTTTGTT 57.663 29.630 2.35 0.00 0.00 2.83
3893 9391 8.673711 TGTCTATTACTTCATGTTTGTTATGGC 58.326 33.333 0.00 0.00 0.00 4.40
3894 9392 8.673711 GTCTATTACTTCATGTTTGTTATGGCA 58.326 33.333 0.00 0.00 0.00 4.92
3895 9393 9.237187 TCTATTACTTCATGTTTGTTATGGCAA 57.763 29.630 0.00 0.00 0.00 4.52
3898 9396 8.531622 TTACTTCATGTTTGTTATGGCAATTG 57.468 30.769 0.00 0.00 0.00 2.32
3899 9397 5.933463 ACTTCATGTTTGTTATGGCAATTGG 59.067 36.000 7.72 0.00 0.00 3.16
3900 9398 5.480642 TCATGTTTGTTATGGCAATTGGT 57.519 34.783 7.72 0.00 0.00 3.67
3901 9399 5.236282 TCATGTTTGTTATGGCAATTGGTG 58.764 37.500 7.72 0.00 0.00 4.17
3904 9402 5.862845 TGTTTGTTATGGCAATTGGTGATT 58.137 33.333 7.72 0.00 0.00 2.57
3906 9404 5.999205 TTGTTATGGCAATTGGTGATTCT 57.001 34.783 7.72 0.00 0.00 2.40
3907 9405 5.999205 TGTTATGGCAATTGGTGATTCTT 57.001 34.783 7.72 0.00 0.00 2.52
3909 9407 5.245751 TGTTATGGCAATTGGTGATTCTTGT 59.754 36.000 7.72 0.00 0.00 3.16
3911 9409 3.992643 TGGCAATTGGTGATTCTTGTTG 58.007 40.909 7.72 0.00 0.00 3.33
3912 9410 3.244146 TGGCAATTGGTGATTCTTGTTGG 60.244 43.478 7.72 0.00 0.00 3.77
3914 9412 4.379652 GCAATTGGTGATTCTTGTTGGTT 58.620 39.130 7.72 0.00 0.00 3.67
3915 9413 4.815846 GCAATTGGTGATTCTTGTTGGTTT 59.184 37.500 7.72 0.00 0.00 3.27
3917 9415 6.481644 GCAATTGGTGATTCTTGTTGGTTTAA 59.518 34.615 7.72 0.00 0.00 1.52
3919 9417 9.703892 CAATTGGTGATTCTTGTTGGTTTAATA 57.296 29.630 0.00 0.00 0.00 0.98
3920 9418 9.927668 AATTGGTGATTCTTGTTGGTTTAATAG 57.072 29.630 0.00 0.00 0.00 1.73
3922 9420 7.881142 TGGTGATTCTTGTTGGTTTAATAGTG 58.119 34.615 0.00 0.00 0.00 2.74
3923 9421 7.504238 TGGTGATTCTTGTTGGTTTAATAGTGT 59.496 33.333 0.00 0.00 0.00 3.55
3925 9423 9.744468 GTGATTCTTGTTGGTTTAATAGTGTTT 57.256 29.630 0.00 0.00 0.00 2.83
3942 9440 9.630098 AATAGTGTTTAATTTCTTGTGCTCATG 57.370 29.630 0.00 0.00 0.00 3.07
3943 9441 6.449698 AGTGTTTAATTTCTTGTGCTCATGG 58.550 36.000 0.00 0.00 0.00 3.66
3944 9442 5.634859 GTGTTTAATTTCTTGTGCTCATGGG 59.365 40.000 0.00 0.00 0.00 4.00
3945 9443 5.538053 TGTTTAATTTCTTGTGCTCATGGGA 59.462 36.000 0.00 0.00 0.00 4.37
3946 9444 6.041409 TGTTTAATTTCTTGTGCTCATGGGAA 59.959 34.615 0.00 0.00 0.00 3.97
3947 9445 6.662865 TTAATTTCTTGTGCTCATGGGAAA 57.337 33.333 0.00 11.53 0.00 3.13
3948 9446 5.549742 AATTTCTTGTGCTCATGGGAAAA 57.450 34.783 0.00 0.00 0.00 2.29
3951 9449 4.365514 TCTTGTGCTCATGGGAAAACTA 57.634 40.909 0.00 0.00 0.00 2.24
3952 9450 4.724399 TCTTGTGCTCATGGGAAAACTAA 58.276 39.130 0.00 0.00 0.00 2.24
3953 9451 4.761739 TCTTGTGCTCATGGGAAAACTAAG 59.238 41.667 0.00 0.00 0.00 2.18
3954 9452 4.365514 TGTGCTCATGGGAAAACTAAGA 57.634 40.909 0.00 0.00 0.00 2.10
3956 9454 5.136828 TGTGCTCATGGGAAAACTAAGAAA 58.863 37.500 0.00 0.00 0.00 2.52
3957 9455 5.241506 TGTGCTCATGGGAAAACTAAGAAAG 59.758 40.000 0.00 0.00 0.00 2.62
3958 9456 4.218417 TGCTCATGGGAAAACTAAGAAAGC 59.782 41.667 0.00 0.00 0.00 3.51
3959 9457 4.460731 GCTCATGGGAAAACTAAGAAAGCT 59.539 41.667 0.00 0.00 0.00 3.74
3960 9458 5.047731 GCTCATGGGAAAACTAAGAAAGCTT 60.048 40.000 0.00 0.00 38.15 3.74
3961 9459 6.331369 TCATGGGAAAACTAAGAAAGCTTG 57.669 37.500 0.00 0.00 35.56 4.01
3962 9460 5.243730 TCATGGGAAAACTAAGAAAGCTTGG 59.756 40.000 0.00 0.00 38.45 3.61
3964 9462 4.149598 GGGAAAACTAAGAAAGCTTGGGA 58.850 43.478 0.00 0.00 36.96 4.37
3966 9464 5.509163 GGGAAAACTAAGAAAGCTTGGGAAC 60.509 44.000 0.00 0.00 36.96 3.62
3970 9468 7.833285 AAACTAAGAAAGCTTGGGAACATAA 57.167 32.000 0.00 0.00 42.32 1.90
3971 9469 8.422577 AAACTAAGAAAGCTTGGGAACATAAT 57.577 30.769 0.00 0.00 42.32 1.28
3973 9471 7.830739 ACTAAGAAAGCTTGGGAACATAATTG 58.169 34.615 0.00 0.00 42.32 2.32
3974 9472 6.670695 AAGAAAGCTTGGGAACATAATTGT 57.329 33.333 0.00 0.00 42.32 2.71
3981 9540 6.041979 AGCTTGGGAACATAATTGTGTTTCTT 59.958 34.615 21.54 2.08 42.08 2.52
3988 9547 7.096065 GGAACATAATTGTGTTTCTTGTCTTGC 60.096 37.037 19.87 5.12 42.08 4.01
3989 9548 7.042797 ACATAATTGTGTTTCTTGTCTTGCT 57.957 32.000 1.42 0.00 33.85 3.91
3990 9549 6.919662 ACATAATTGTGTTTCTTGTCTTGCTG 59.080 34.615 1.42 0.00 33.85 4.41
3991 9550 4.989279 ATTGTGTTTCTTGTCTTGCTGT 57.011 36.364 0.00 0.00 0.00 4.40
3993 9552 4.782019 TGTGTTTCTTGTCTTGCTGTTT 57.218 36.364 0.00 0.00 0.00 2.83
3994 9553 4.732784 TGTGTTTCTTGTCTTGCTGTTTC 58.267 39.130 0.00 0.00 0.00 2.78
3996 9555 3.181501 TGTTTCTTGTCTTGCTGTTTCGG 60.182 43.478 0.00 0.00 0.00 4.30
3997 9556 2.325583 TCTTGTCTTGCTGTTTCGGT 57.674 45.000 0.00 0.00 0.00 4.69
3998 9557 2.639065 TCTTGTCTTGCTGTTTCGGTT 58.361 42.857 0.00 0.00 0.00 4.44
3999 9558 2.354510 TCTTGTCTTGCTGTTTCGGTTG 59.645 45.455 0.00 0.00 0.00 3.77
4001 9560 0.317854 GTCTTGCTGTTTCGGTTGCC 60.318 55.000 0.00 0.00 0.00 4.52
4003 9562 0.385390 CTTGCTGTTTCGGTTGCCTT 59.615 50.000 0.00 0.00 0.00 4.35
4004 9563 0.820871 TTGCTGTTTCGGTTGCCTTT 59.179 45.000 0.00 0.00 0.00 3.11
4005 9564 0.820871 TGCTGTTTCGGTTGCCTTTT 59.179 45.000 0.00 0.00 0.00 2.27
4006 9565 2.025155 TGCTGTTTCGGTTGCCTTTTA 58.975 42.857 0.00 0.00 0.00 1.52
4007 9566 2.427453 TGCTGTTTCGGTTGCCTTTTAA 59.573 40.909 0.00 0.00 0.00 1.52
4008 9567 3.119101 TGCTGTTTCGGTTGCCTTTTAAA 60.119 39.130 0.00 0.00 0.00 1.52
4009 9568 3.489416 GCTGTTTCGGTTGCCTTTTAAAG 59.511 43.478 0.00 0.00 0.00 1.85
4010 9569 4.735283 GCTGTTTCGGTTGCCTTTTAAAGA 60.735 41.667 6.24 0.00 0.00 2.52
4011 9570 4.927422 TGTTTCGGTTGCCTTTTAAAGAG 58.073 39.130 6.24 0.00 0.00 2.85
4012 9571 4.641094 TGTTTCGGTTGCCTTTTAAAGAGA 59.359 37.500 6.24 0.00 0.00 3.10
4013 9572 5.125739 TGTTTCGGTTGCCTTTTAAAGAGAA 59.874 36.000 6.24 0.00 0.00 2.87
4016 9575 4.217550 TCGGTTGCCTTTTAAAGAGAATGG 59.782 41.667 6.24 0.00 0.00 3.16
4017 9576 4.618227 CGGTTGCCTTTTAAAGAGAATGGG 60.618 45.833 6.24 0.00 0.00 4.00
4018 9577 4.322725 GGTTGCCTTTTAAAGAGAATGGGG 60.323 45.833 6.24 0.00 0.00 4.96
4020 9579 4.488770 TGCCTTTTAAAGAGAATGGGGTT 58.511 39.130 6.24 0.00 0.00 4.11
4021 9580 5.646215 TGCCTTTTAAAGAGAATGGGGTTA 58.354 37.500 6.24 0.00 0.00 2.85
4022 9581 5.714806 TGCCTTTTAAAGAGAATGGGGTTAG 59.285 40.000 6.24 0.00 0.00 2.34
4023 9582 5.394224 GCCTTTTAAAGAGAATGGGGTTAGC 60.394 44.000 6.24 0.00 0.00 3.09
4024 9583 5.714806 CCTTTTAAAGAGAATGGGGTTAGCA 59.285 40.000 6.24 0.00 0.00 3.49
4025 9584 6.210584 CCTTTTAAAGAGAATGGGGTTAGCAA 59.789 38.462 6.24 0.00 0.00 3.91
4026 9585 6.834168 TTTAAAGAGAATGGGGTTAGCAAG 57.166 37.500 0.00 0.00 0.00 4.01
4027 9586 4.657814 AAAGAGAATGGGGTTAGCAAGA 57.342 40.909 0.00 0.00 0.00 3.02
4029 9588 3.454858 AGAGAATGGGGTTAGCAAGAGA 58.545 45.455 0.00 0.00 0.00 3.10
4030 9589 3.846588 AGAGAATGGGGTTAGCAAGAGAA 59.153 43.478 0.00 0.00 0.00 2.87
4031 9590 4.289672 AGAGAATGGGGTTAGCAAGAGAAA 59.710 41.667 0.00 0.00 0.00 2.52
4033 9592 5.196695 AGAATGGGGTTAGCAAGAGAAATC 58.803 41.667 0.00 0.00 0.00 2.17
4034 9593 4.591321 ATGGGGTTAGCAAGAGAAATCA 57.409 40.909 0.00 0.00 0.00 2.57
4036 9595 4.526970 TGGGGTTAGCAAGAGAAATCATC 58.473 43.478 0.00 0.00 0.00 2.92
4037 9596 4.228210 TGGGGTTAGCAAGAGAAATCATCT 59.772 41.667 0.00 0.00 42.61 2.90
4060 9619 9.868277 ATCTTGTAGATTATGAGTAGCTTATGC 57.132 33.333 0.00 0.00 28.69 3.14
4062 9621 9.650539 CTTGTAGATTATGAGTAGCTTATGCAT 57.349 33.333 3.79 3.79 42.74 3.96
4063 9622 8.992835 TGTAGATTATGAGTAGCTTATGCATG 57.007 34.615 10.16 0.00 42.74 4.06
4064 9623 8.806146 TGTAGATTATGAGTAGCTTATGCATGA 58.194 33.333 10.16 0.00 42.74 3.07
4065 9624 9.299963 GTAGATTATGAGTAGCTTATGCATGAG 57.700 37.037 13.92 13.92 42.74 2.90
4069 9628 3.963374 TGAGTAGCTTATGCATGAGTCCT 59.037 43.478 18.68 11.13 42.74 3.85
4070 9629 4.202192 TGAGTAGCTTATGCATGAGTCCTG 60.202 45.833 18.68 0.00 42.74 3.86
4071 9630 3.963374 AGTAGCTTATGCATGAGTCCTGA 59.037 43.478 18.68 0.00 42.74 3.86
4072 9631 4.592351 AGTAGCTTATGCATGAGTCCTGAT 59.408 41.667 18.68 0.00 42.74 2.90
4073 9632 3.741249 AGCTTATGCATGAGTCCTGATG 58.259 45.455 18.68 0.00 42.74 3.07
4074 9633 2.812591 GCTTATGCATGAGTCCTGATGG 59.187 50.000 18.68 0.00 39.41 3.51
4075 9634 3.495629 GCTTATGCATGAGTCCTGATGGA 60.496 47.826 18.68 0.00 38.47 3.41
4077 9728 3.878237 ATGCATGAGTCCTGATGGAAT 57.122 42.857 0.00 0.00 45.18 3.01
4095 9746 5.741011 TGGAATCACTATAAACACCAGGTC 58.259 41.667 0.00 0.00 0.00 3.85
4098 9749 6.828785 GGAATCACTATAAACACCAGGTCAAT 59.171 38.462 0.00 0.00 0.00 2.57
4112 9763 9.621629 ACACCAGGTCAATATAATTATTTTCGA 57.378 29.630 2.68 1.13 0.00 3.71
4114 9765 9.847224 ACCAGGTCAATATAATTATTTTCGAGT 57.153 29.630 2.68 0.00 0.00 4.18
4134 11906 7.052248 TCGAGTAGTAGTTATGATGGTCAAGA 58.948 38.462 0.00 0.00 0.00 3.02
4139 11911 9.413048 GTAGTAGTTATGATGGTCAAGATAAGC 57.587 37.037 0.00 0.00 0.00 3.09
4140 11912 8.023021 AGTAGTTATGATGGTCAAGATAAGCA 57.977 34.615 0.00 0.00 0.00 3.91
4141 11913 8.654997 AGTAGTTATGATGGTCAAGATAAGCAT 58.345 33.333 0.00 0.00 37.54 3.79
4142 11914 9.929180 GTAGTTATGATGGTCAAGATAAGCATA 57.071 33.333 0.00 0.00 35.13 3.14
4154 11926 9.937175 GTCAAGATAAGCATAAAGGAATACAAC 57.063 33.333 0.00 0.00 0.00 3.32
4192 11964 4.043310 ACCTTGGATTGATTCACCTTGAGA 59.957 41.667 0.00 0.00 0.00 3.27
4196 11968 7.310237 CCTTGGATTGATTCACCTTGAGAAAAT 60.310 37.037 0.00 0.00 0.00 1.82
4202 11974 9.649167 ATTGATTCACCTTGAGAAAATTCATTC 57.351 29.630 0.00 0.00 0.00 2.67
4203 11975 8.180706 TGATTCACCTTGAGAAAATTCATTCA 57.819 30.769 0.00 0.00 0.00 2.57
4204 11976 8.640651 TGATTCACCTTGAGAAAATTCATTCAA 58.359 29.630 0.00 0.00 0.00 2.69
4207 11979 7.651808 TCACCTTGAGAAAATTCATTCAAGTC 58.348 34.615 17.10 0.00 43.00 3.01
4209 11981 7.922278 CACCTTGAGAAAATTCATTCAAGTCAA 59.078 33.333 17.10 7.51 43.00 3.18
4210 11982 8.477256 ACCTTGAGAAAATTCATTCAAGTCAAA 58.523 29.630 17.10 0.00 43.00 2.69
4212 11984 9.740239 CTTGAGAAAATTCATTCAAGTCAAAGA 57.260 29.630 13.14 0.00 40.84 2.52
4213 11985 9.520204 TTGAGAAAATTCATTCAAGTCAAAGAC 57.480 29.630 0.00 0.00 0.00 3.01
4215 11987 9.688592 GAGAAAATTCATTCAAGTCAAAGACAT 57.311 29.630 0.00 0.00 34.60 3.06
4216 11988 9.688592 AGAAAATTCATTCAAGTCAAAGACATC 57.311 29.630 0.00 0.00 34.60 3.06
4217 11989 8.822652 AAAATTCATTCAAGTCAAAGACATCC 57.177 30.769 0.00 0.00 34.60 3.51
4232 12004 6.976934 AAGACATCCCATTTTGTACACTTT 57.023 33.333 0.00 0.00 0.00 2.66
4233 12005 6.976934 AGACATCCCATTTTGTACACTTTT 57.023 33.333 0.00 0.00 0.00 2.27
4238 12010 8.264347 ACATCCCATTTTGTACACTTTTTCTTT 58.736 29.630 0.00 0.00 0.00 2.52
4262 12036 4.968719 TGATAGATGTAGGGAGGCAGAAAA 59.031 41.667 0.00 0.00 0.00 2.29
4263 12037 3.922171 AGATGTAGGGAGGCAGAAAAG 57.078 47.619 0.00 0.00 0.00 2.27
4266 12040 3.418684 TGTAGGGAGGCAGAAAAGTTC 57.581 47.619 0.00 0.00 0.00 3.01
4269 12043 1.002544 AGGGAGGCAGAAAAGTTCTCG 59.997 52.381 0.00 0.00 38.11 4.04
4273 12047 3.058846 GGAGGCAGAAAAGTTCTCGTTTC 60.059 47.826 0.00 0.00 40.49 2.78
4274 12048 3.541632 AGGCAGAAAAGTTCTCGTTTCA 58.458 40.909 8.65 0.00 41.83 2.69
4284 12058 6.718454 AAGTTCTCGTTTCATCATCTTCAG 57.282 37.500 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.288381 AGGAGGACCCCAGGCTCT 61.288 66.667 2.29 0.00 36.73 4.09
6 7 2.766229 GAGGAGGACCCCAGGCTC 60.766 72.222 2.29 0.00 36.73 4.70
7 8 4.423209 GGAGGAGGACCCCAGGCT 62.423 72.222 2.29 0.00 36.73 4.58
8 9 3.952799 AAGGAGGAGGACCCCAGGC 62.953 68.421 2.29 0.00 36.73 4.85
9 10 0.044244 TAAAGGAGGAGGACCCCAGG 59.956 60.000 2.29 0.00 36.73 4.45
10 11 1.966845 TTAAAGGAGGAGGACCCCAG 58.033 55.000 2.29 0.00 36.73 4.45
11 12 2.444033 TTTAAAGGAGGAGGACCCCA 57.556 50.000 2.29 0.00 36.73 4.96
12 13 3.820195 TTTTTAAAGGAGGAGGACCCC 57.180 47.619 0.00 0.00 36.73 4.95
43 44 9.410556 GCAAGTTAGCTTCATTTGATTCTTTAA 57.589 29.630 0.00 0.00 31.49 1.52
44 45 7.750458 CGCAAGTTAGCTTCATTTGATTCTTTA 59.250 33.333 0.00 0.00 31.49 1.85
45 46 6.583806 CGCAAGTTAGCTTCATTTGATTCTTT 59.416 34.615 0.00 0.00 31.49 2.52
46 47 6.088824 CGCAAGTTAGCTTCATTTGATTCTT 58.911 36.000 0.00 0.00 31.49 2.52
47 48 5.634896 CGCAAGTTAGCTTCATTTGATTCT 58.365 37.500 0.00 0.00 31.49 2.40
48 49 5.921784 CGCAAGTTAGCTTCATTTGATTC 57.078 39.130 0.00 0.00 31.49 2.52
66 67 0.981183 ATGGAGGGAGTACAACGCAA 59.019 50.000 0.00 0.00 0.00 4.85
67 68 0.535335 GATGGAGGGAGTACAACGCA 59.465 55.000 0.00 0.00 0.00 5.24
68 69 0.179081 GGATGGAGGGAGTACAACGC 60.179 60.000 0.00 0.00 0.00 4.84
69 70 0.464452 GGGATGGAGGGAGTACAACG 59.536 60.000 0.00 0.00 0.00 4.10
70 71 1.580059 TGGGATGGAGGGAGTACAAC 58.420 55.000 0.00 0.00 0.00 3.32
71 72 2.587060 ATGGGATGGAGGGAGTACAA 57.413 50.000 0.00 0.00 0.00 2.41
72 73 3.717507 TTATGGGATGGAGGGAGTACA 57.282 47.619 0.00 0.00 0.00 2.90
73 74 7.844779 TCTTATATTATGGGATGGAGGGAGTAC 59.155 40.741 0.00 0.00 0.00 2.73
74 75 7.961940 TCTTATATTATGGGATGGAGGGAGTA 58.038 38.462 0.00 0.00 0.00 2.59
75 76 6.826727 TCTTATATTATGGGATGGAGGGAGT 58.173 40.000 0.00 0.00 0.00 3.85
76 77 7.135522 TCTCTTATATTATGGGATGGAGGGAG 58.864 42.308 0.00 0.00 0.00 4.30
77 78 7.068679 TCTCTTATATTATGGGATGGAGGGA 57.931 40.000 0.00 0.00 0.00 4.20
78 79 6.905776 ACTCTCTTATATTATGGGATGGAGGG 59.094 42.308 0.00 0.00 0.00 4.30
79 80 7.986553 ACTCTCTTATATTATGGGATGGAGG 57.013 40.000 0.00 0.00 0.00 4.30
80 81 8.637986 GCTACTCTCTTATATTATGGGATGGAG 58.362 40.741 0.00 0.00 0.00 3.86
81 82 8.347591 AGCTACTCTCTTATATTATGGGATGGA 58.652 37.037 0.00 0.00 0.00 3.41
82 83 8.546083 AGCTACTCTCTTATATTATGGGATGG 57.454 38.462 0.00 0.00 0.00 3.51
116 117 9.634163 AAACGTTTCAAACTTTGACTAGAAAAT 57.366 25.926 7.96 0.00 39.87 1.82
117 118 8.907685 CAAACGTTTCAAACTTTGACTAGAAAA 58.092 29.630 11.37 0.00 39.87 2.29
118 119 8.291032 TCAAACGTTTCAAACTTTGACTAGAAA 58.709 29.630 11.37 0.00 39.87 2.52
119 120 7.808672 TCAAACGTTTCAAACTTTGACTAGAA 58.191 30.769 11.37 0.00 39.87 2.10
120 121 7.367159 TCAAACGTTTCAAACTTTGACTAGA 57.633 32.000 11.37 0.00 39.87 2.43
121 122 8.122952 AGATCAAACGTTTCAAACTTTGACTAG 58.877 33.333 20.64 1.64 39.23 2.57
122 123 7.981142 AGATCAAACGTTTCAAACTTTGACTA 58.019 30.769 20.64 7.97 39.23 2.59
123 124 6.852664 AGATCAAACGTTTCAAACTTTGACT 58.147 32.000 20.64 17.49 39.23 3.41
124 125 7.376072 CCTAGATCAAACGTTTCAAACTTTGAC 59.624 37.037 20.64 16.33 39.23 3.18
125 126 7.281324 TCCTAGATCAAACGTTTCAAACTTTGA 59.719 33.333 20.56 20.56 39.93 2.69
126 127 7.414436 TCCTAGATCAAACGTTTCAAACTTTG 58.586 34.615 11.37 14.29 34.13 2.77
127 128 7.562454 TCCTAGATCAAACGTTTCAAACTTT 57.438 32.000 11.37 0.00 0.00 2.66
128 129 7.745620 ATCCTAGATCAAACGTTTCAAACTT 57.254 32.000 11.37 0.00 0.00 2.66
129 130 8.842358 TTATCCTAGATCAAACGTTTCAAACT 57.158 30.769 11.37 8.96 0.00 2.66
132 133 9.667107 AGATTTATCCTAGATCAAACGTTTCAA 57.333 29.630 11.37 2.60 0.00 2.69
133 134 9.667107 AAGATTTATCCTAGATCAAACGTTTCA 57.333 29.630 11.37 0.00 0.00 2.69
191 192 9.927668 CCATTCCAAATTAATCAAAGTTGTACT 57.072 29.630 0.00 0.00 40.67 2.73
192 193 9.921637 TCCATTCCAAATTAATCAAAGTTGTAC 57.078 29.630 0.00 0.00 40.67 2.90
194 195 9.439500 CATCCATTCCAAATTAATCAAAGTTGT 57.561 29.630 0.00 0.00 40.67 3.32
195 196 9.656040 TCATCCATTCCAAATTAATCAAAGTTG 57.344 29.630 0.00 0.00 41.66 3.16
215 216 7.201145 GCGAAAGATAACTAGTACTTCATCCA 58.799 38.462 0.00 0.00 0.00 3.41
262 265 2.032377 CCTTAACGAGCGCAGTTTTCAA 60.032 45.455 22.68 12.45 33.42 2.69
305 324 2.098680 GGAGAGCGAGTCGTGTCG 59.901 66.667 15.08 5.04 43.08 4.35
350 378 2.731571 CCCTCGGCGAGATGGGAAA 61.732 63.158 36.47 0.00 38.69 3.13
409 441 1.602605 GTGGGGAAACTCGTTGGGG 60.603 63.158 0.00 0.00 0.00 4.96
443 475 3.110447 TGGCATTTTCTTCTTGTTGGC 57.890 42.857 0.00 0.00 0.00 4.52
447 479 4.074970 AGACGATGGCATTTTCTTCTTGT 58.925 39.130 0.00 0.00 0.00 3.16
493 525 1.045911 GGAGGAAGATCTCGGCCAGT 61.046 60.000 2.24 0.00 34.74 4.00
557 590 1.213013 CGAGTCGGTGGAAGGTGAG 59.787 63.158 4.10 0.00 0.00 3.51
736 772 2.679342 CCAAAGGCGATGGGAGGGA 61.679 63.158 3.93 0.00 34.15 4.20
907 948 1.755380 ACATCTGCCTACCGAAGTACC 59.245 52.381 0.00 0.00 0.00 3.34
908 949 2.541178 CGACATCTGCCTACCGAAGTAC 60.541 54.545 0.00 0.00 0.00 2.73
909 950 1.674441 CGACATCTGCCTACCGAAGTA 59.326 52.381 0.00 0.00 0.00 2.24
910 951 0.456221 CGACATCTGCCTACCGAAGT 59.544 55.000 0.00 0.00 0.00 3.01
911 952 0.249073 CCGACATCTGCCTACCGAAG 60.249 60.000 0.00 0.00 0.00 3.79
912 953 0.968901 ACCGACATCTGCCTACCGAA 60.969 55.000 0.00 0.00 0.00 4.30
913 954 1.379443 ACCGACATCTGCCTACCGA 60.379 57.895 0.00 0.00 0.00 4.69
914 955 1.226974 CACCGACATCTGCCTACCG 60.227 63.158 0.00 0.00 0.00 4.02
1051 1125 0.392729 GCAGCAGCTCTCCATTGTCT 60.393 55.000 0.00 0.00 37.91 3.41
1500 6518 8.477419 AAAAATATTCAAAGAGTGGGTTCTCA 57.523 30.769 0.00 0.00 36.97 3.27
1676 6707 6.698380 ACAAGTCGTGTGATAATTAGGAAGT 58.302 36.000 0.00 0.00 39.72 3.01
1745 6781 8.989980 GCACAAGAAAGTAGACACTACTAAATT 58.010 33.333 11.09 3.66 33.48 1.82
1892 7223 5.191727 ACCCATGATCTTATTTGTGACCA 57.808 39.130 0.00 0.00 0.00 4.02
1996 7334 2.295885 GCATTGCTGATAAGCACTCCT 58.704 47.619 3.48 0.00 45.32 3.69
2018 7356 5.291858 TGTTTGCACATTTTTATCGTTTGCA 59.708 32.000 0.00 0.00 36.74 4.08
2068 7406 5.708948 TGTTTTTCAATATGTACAGGCTGC 58.291 37.500 15.89 0.00 0.00 5.25
2112 7450 8.333186 GGCAAATTTCTGCAATGAAGATTATTC 58.667 33.333 4.59 0.00 44.52 1.75
2160 7498 2.819284 CGGGCCCCCTAATCCAGAC 61.819 68.421 18.66 0.00 0.00 3.51
2204 7542 2.837947 ACCAGACCAGAGATCATTCCA 58.162 47.619 0.00 0.00 0.00 3.53
2228 7566 6.205464 CAGAGAAACTAATGCAAGAAAGGTGA 59.795 38.462 0.00 0.00 0.00 4.02
2250 7588 8.589701 TCACCACATATACTAAAGAGAACAGA 57.410 34.615 0.00 0.00 0.00 3.41
2341 7679 3.463944 ACTACGTTCCTCCACAACAAAG 58.536 45.455 0.00 0.00 0.00 2.77
2346 7684 3.827876 TCACATACTACGTTCCTCCACAA 59.172 43.478 0.00 0.00 0.00 3.33
2401 7739 5.754782 TGGTACCAGATGCACATTTCTAAT 58.245 37.500 11.60 0.00 0.00 1.73
2500 7846 3.374367 CAGATTGACTCCACTTGCATGAG 59.626 47.826 6.60 4.24 0.00 2.90
2688 8034 4.399618 TCATCTCTACCTAGCAACTCACAC 59.600 45.833 0.00 0.00 0.00 3.82
2740 8086 4.134563 TCAGAACTGCTTAAAACACTCCC 58.865 43.478 0.00 0.00 0.00 4.30
2745 8091 5.747565 CACGATTCAGAACTGCTTAAAACA 58.252 37.500 0.00 0.00 0.00 2.83
2775 8121 5.583457 TCTTACGTAAAGCCCAGAATTAAGC 59.417 40.000 9.68 0.00 34.97 3.09
2778 8124 5.526111 GCATCTTACGTAAAGCCCAGAATTA 59.474 40.000 9.68 0.00 34.97 1.40
2784 8130 1.066716 ACGCATCTTACGTAAAGCCCA 60.067 47.619 9.68 0.00 43.02 5.36
2793 8139 6.706055 AACCATATTATCACGCATCTTACG 57.294 37.500 0.00 0.00 0.00 3.18
2802 8148 9.632807 TTTTCCTTCAAAAACCATATTATCACG 57.367 29.630 0.00 0.00 30.58 4.35
2823 8169 4.397420 AGGGATGGTTTGCAAAATTTTCC 58.603 39.130 14.67 16.32 0.00 3.13
2835 8181 4.018050 AGCAAGTAATCAGAGGGATGGTTT 60.018 41.667 0.00 0.00 36.02 3.27
2988 8363 4.714802 AGTACATATACACAACCTGGCAGA 59.285 41.667 17.94 0.00 33.30 4.26
3008 8388 7.182817 ACTTAATCATGCAGAACTGGTAGTA 57.817 36.000 3.99 0.00 0.00 1.82
3016 8413 8.746922 TCATGAAAAACTTAATCATGCAGAAC 57.253 30.769 10.01 0.00 46.31 3.01
3112 8510 5.414454 TGACTGCAAACACTCAACTTAGTTT 59.586 36.000 0.00 0.00 34.78 2.66
3168 8579 3.419915 CACAACAGTATTCTCGCATTGC 58.580 45.455 0.00 0.00 0.00 3.56
3187 8598 3.567478 AGTATCATTGGGAAGAGGCAC 57.433 47.619 0.00 0.00 0.00 5.01
3199 8610 6.239345 GCTGCAGGTACTTAGGTAGTATCATT 60.239 42.308 17.12 0.00 42.02 2.57
3353 8811 2.622064 ACTCCATGCTATCGAAACCC 57.378 50.000 0.00 0.00 0.00 4.11
3389 8848 1.552337 GCCATCTTGTCAGAGAGGTGA 59.448 52.381 0.00 0.00 32.86 4.02
3390 8849 1.738365 CGCCATCTTGTCAGAGAGGTG 60.738 57.143 0.00 0.00 34.26 4.00
3440 8899 4.932799 CACGAACACCATAGACATAACCAA 59.067 41.667 0.00 0.00 0.00 3.67
3523 8986 6.560253 ACTGTTACTTTCATGGTCACATTC 57.440 37.500 0.00 0.00 34.35 2.67
3583 9046 6.042093 TGGCTTGTAAATATAGAGCAGCTAGT 59.958 38.462 0.00 0.00 35.12 2.57
3593 9056 7.707035 AGAAGAAGACGTGGCTTGTAAATATAG 59.293 37.037 0.00 0.00 0.00 1.31
3731 9211 1.607467 GTGAAGGCACCCCAAGCAT 60.607 57.895 0.00 0.00 39.14 3.79
3741 9221 0.249447 CTGTCAGACACGTGAAGGCA 60.249 55.000 25.01 16.96 0.00 4.75
3746 9226 3.123050 CAAATCACTGTCAGACACGTGA 58.877 45.455 25.01 25.37 39.07 4.35
3792 9282 3.088532 TGGCATGGAACTGTTCATAACC 58.911 45.455 21.01 16.09 0.00 2.85
3794 9284 2.754552 GCTGGCATGGAACTGTTCATAA 59.245 45.455 21.01 7.45 0.00 1.90
3809 9307 5.186992 ACATGACTAATATATACCGCTGGCA 59.813 40.000 0.00 0.00 0.00 4.92
3811 9309 7.320399 TGAACATGACTAATATATACCGCTGG 58.680 38.462 0.00 0.00 0.00 4.85
3830 9328 5.669447 ACTATGAAGGGAAGGAGATGAACAT 59.331 40.000 0.00 0.00 0.00 2.71
3836 9334 6.846505 TGTGATAACTATGAAGGGAAGGAGAT 59.153 38.462 0.00 0.00 0.00 2.75
3837 9335 6.202331 TGTGATAACTATGAAGGGAAGGAGA 58.798 40.000 0.00 0.00 0.00 3.71
3839 9337 6.615316 TCATGTGATAACTATGAAGGGAAGGA 59.385 38.462 0.00 0.00 0.00 3.36
3841 9339 7.504403 AGTCATGTGATAACTATGAAGGGAAG 58.496 38.462 0.00 0.00 33.10 3.46
3856 9354 9.322773 CATGAAGTAATAGACAAGTCATGTGAT 57.677 33.333 2.72 0.00 44.12 3.06
3857 9355 8.314021 ACATGAAGTAATAGACAAGTCATGTGA 58.686 33.333 13.85 0.00 45.71 3.58
3860 9358 9.764870 CAAACATGAAGTAATAGACAAGTCATG 57.235 33.333 0.00 8.73 43.21 3.07
3861 9359 9.507329 ACAAACATGAAGTAATAGACAAGTCAT 57.493 29.630 0.00 0.00 30.55 3.06
3862 9360 8.902540 ACAAACATGAAGTAATAGACAAGTCA 57.097 30.769 0.00 0.00 0.00 3.41
3868 9366 8.673711 TGCCATAACAAACATGAAGTAATAGAC 58.326 33.333 0.00 0.00 0.00 2.59
3872 9370 9.153721 CAATTGCCATAACAAACATGAAGTAAT 57.846 29.630 0.00 0.00 32.27 1.89
3874 9372 7.095910 CCAATTGCCATAACAAACATGAAGTA 58.904 34.615 0.00 0.00 32.27 2.24
3875 9373 5.933463 CCAATTGCCATAACAAACATGAAGT 59.067 36.000 0.00 0.00 32.27 3.01
3877 9375 5.699915 CACCAATTGCCATAACAAACATGAA 59.300 36.000 0.00 0.00 32.27 2.57
3878 9376 5.011431 TCACCAATTGCCATAACAAACATGA 59.989 36.000 0.00 0.00 32.27 3.07
3879 9377 5.236282 TCACCAATTGCCATAACAAACATG 58.764 37.500 0.00 0.00 32.27 3.21
3880 9378 5.480642 TCACCAATTGCCATAACAAACAT 57.519 34.783 0.00 0.00 32.27 2.71
3881 9379 4.944619 TCACCAATTGCCATAACAAACA 57.055 36.364 0.00 0.00 32.27 2.83
3884 9382 5.999205 AGAATCACCAATTGCCATAACAA 57.001 34.783 0.00 0.00 0.00 2.83
3885 9383 5.245751 ACAAGAATCACCAATTGCCATAACA 59.754 36.000 0.00 0.00 0.00 2.41
3886 9384 5.723295 ACAAGAATCACCAATTGCCATAAC 58.277 37.500 0.00 0.00 0.00 1.89
3887 9385 5.999205 ACAAGAATCACCAATTGCCATAA 57.001 34.783 0.00 0.00 0.00 1.90
3888 9386 5.337410 CCAACAAGAATCACCAATTGCCATA 60.337 40.000 0.00 0.00 0.00 2.74
3890 9388 3.244146 CCAACAAGAATCACCAATTGCCA 60.244 43.478 0.00 0.00 0.00 4.92
3891 9389 3.244181 ACCAACAAGAATCACCAATTGCC 60.244 43.478 0.00 0.00 0.00 4.52
3892 9390 3.993920 ACCAACAAGAATCACCAATTGC 58.006 40.909 0.00 0.00 0.00 3.56
3893 9391 8.606040 ATTAAACCAACAAGAATCACCAATTG 57.394 30.769 0.00 0.00 0.00 2.32
3894 9392 9.927668 CTATTAAACCAACAAGAATCACCAATT 57.072 29.630 0.00 0.00 0.00 2.32
3895 9393 9.088987 ACTATTAAACCAACAAGAATCACCAAT 57.911 29.630 0.00 0.00 0.00 3.16
3896 9394 8.356657 CACTATTAAACCAACAAGAATCACCAA 58.643 33.333 0.00 0.00 0.00 3.67
3898 9396 7.882179 ACACTATTAAACCAACAAGAATCACC 58.118 34.615 0.00 0.00 0.00 4.02
3899 9397 9.744468 AAACACTATTAAACCAACAAGAATCAC 57.256 29.630 0.00 0.00 0.00 3.06
3917 9415 8.246180 CCATGAGCACAAGAAATTAAACACTAT 58.754 33.333 0.00 0.00 0.00 2.12
3919 9417 6.449698 CCATGAGCACAAGAAATTAAACACT 58.550 36.000 0.00 0.00 0.00 3.55
3920 9418 5.634859 CCCATGAGCACAAGAAATTAAACAC 59.365 40.000 0.00 0.00 0.00 3.32
3922 9420 6.024552 TCCCATGAGCACAAGAAATTAAAC 57.975 37.500 0.00 0.00 0.00 2.01
3923 9421 6.662865 TTCCCATGAGCACAAGAAATTAAA 57.337 33.333 0.00 0.00 0.00 1.52
3925 9423 6.267471 AGTTTTCCCATGAGCACAAGAAATTA 59.733 34.615 0.00 0.00 0.00 1.40
3926 9424 5.070847 AGTTTTCCCATGAGCACAAGAAATT 59.929 36.000 0.00 0.42 0.00 1.82
3927 9425 4.590222 AGTTTTCCCATGAGCACAAGAAAT 59.410 37.500 0.00 0.00 0.00 2.17
3928 9426 3.960102 AGTTTTCCCATGAGCACAAGAAA 59.040 39.130 0.00 0.00 0.00 2.52
3929 9427 3.565307 AGTTTTCCCATGAGCACAAGAA 58.435 40.909 0.00 0.00 0.00 2.52
3930 9428 3.228188 AGTTTTCCCATGAGCACAAGA 57.772 42.857 0.00 0.00 0.00 3.02
3932 9430 4.724399 TCTTAGTTTTCCCATGAGCACAA 58.276 39.130 0.00 0.00 0.00 3.33
3933 9431 4.365514 TCTTAGTTTTCCCATGAGCACA 57.634 40.909 0.00 0.00 0.00 4.57
3934 9432 5.703876 CTTTCTTAGTTTTCCCATGAGCAC 58.296 41.667 0.00 0.00 0.00 4.40
3935 9433 4.218417 GCTTTCTTAGTTTTCCCATGAGCA 59.782 41.667 0.00 0.00 0.00 4.26
3936 9434 4.460731 AGCTTTCTTAGTTTTCCCATGAGC 59.539 41.667 0.00 0.00 0.00 4.26
3937 9435 6.385033 CAAGCTTTCTTAGTTTTCCCATGAG 58.615 40.000 0.00 0.00 0.00 2.90
3938 9436 5.243730 CCAAGCTTTCTTAGTTTTCCCATGA 59.756 40.000 0.00 0.00 0.00 3.07
3939 9437 5.473039 CCAAGCTTTCTTAGTTTTCCCATG 58.527 41.667 0.00 0.00 0.00 3.66
3940 9438 4.528206 CCCAAGCTTTCTTAGTTTTCCCAT 59.472 41.667 0.00 0.00 0.00 4.00
3942 9440 4.149598 TCCCAAGCTTTCTTAGTTTTCCC 58.850 43.478 0.00 0.00 0.00 3.97
3943 9441 5.068591 TGTTCCCAAGCTTTCTTAGTTTTCC 59.931 40.000 0.00 0.00 0.00 3.13
3944 9442 6.144078 TGTTCCCAAGCTTTCTTAGTTTTC 57.856 37.500 0.00 0.00 0.00 2.29
3945 9443 6.731292 ATGTTCCCAAGCTTTCTTAGTTTT 57.269 33.333 0.00 0.00 0.00 2.43
3946 9444 7.833285 TTATGTTCCCAAGCTTTCTTAGTTT 57.167 32.000 0.00 0.00 0.00 2.66
3947 9445 8.306761 CAATTATGTTCCCAAGCTTTCTTAGTT 58.693 33.333 0.00 0.00 0.00 2.24
3948 9446 7.451566 ACAATTATGTTCCCAAGCTTTCTTAGT 59.548 33.333 0.00 0.00 35.91 2.24
3951 9449 6.041979 ACACAATTATGTTCCCAAGCTTTCTT 59.958 34.615 0.00 0.00 37.82 2.52
3952 9450 5.539955 ACACAATTATGTTCCCAAGCTTTCT 59.460 36.000 0.00 0.00 37.82 2.52
3953 9451 5.783111 ACACAATTATGTTCCCAAGCTTTC 58.217 37.500 0.00 0.00 37.82 2.62
3954 9452 5.806654 ACACAATTATGTTCCCAAGCTTT 57.193 34.783 0.00 0.00 37.82 3.51
3956 9454 5.539955 AGAAACACAATTATGTTCCCAAGCT 59.460 36.000 1.92 0.00 42.01 3.74
3957 9455 5.783111 AGAAACACAATTATGTTCCCAAGC 58.217 37.500 1.92 0.00 42.01 4.01
3958 9456 7.209475 ACAAGAAACACAATTATGTTCCCAAG 58.791 34.615 1.92 0.00 42.01 3.61
3959 9457 7.069331 AGACAAGAAACACAATTATGTTCCCAA 59.931 33.333 1.92 0.00 42.01 4.12
3960 9458 6.549364 AGACAAGAAACACAATTATGTTCCCA 59.451 34.615 1.92 0.00 42.01 4.37
3961 9459 6.981722 AGACAAGAAACACAATTATGTTCCC 58.018 36.000 1.92 0.00 42.01 3.97
3962 9460 7.096065 GCAAGACAAGAAACACAATTATGTTCC 60.096 37.037 1.92 0.00 42.01 3.62
3964 9462 7.436080 CAGCAAGACAAGAAACACAATTATGTT 59.564 33.333 0.00 0.00 44.76 2.71
3966 9464 6.919662 ACAGCAAGACAAGAAACACAATTATG 59.080 34.615 0.00 0.00 0.00 1.90
3970 9468 4.989279 ACAGCAAGACAAGAAACACAAT 57.011 36.364 0.00 0.00 0.00 2.71
3971 9469 4.782019 AACAGCAAGACAAGAAACACAA 57.218 36.364 0.00 0.00 0.00 3.33
3973 9471 3.786048 CGAAACAGCAAGACAAGAAACAC 59.214 43.478 0.00 0.00 0.00 3.32
3974 9472 3.181501 CCGAAACAGCAAGACAAGAAACA 60.182 43.478 0.00 0.00 0.00 2.83
3981 9540 0.380378 GCAACCGAAACAGCAAGACA 59.620 50.000 0.00 0.00 0.00 3.41
3988 9547 4.927422 TCTTTAAAAGGCAACCGAAACAG 58.073 39.130 0.00 0.00 37.17 3.16
3989 9548 4.641094 TCTCTTTAAAAGGCAACCGAAACA 59.359 37.500 0.00 0.00 37.17 2.83
3990 9549 5.177725 TCTCTTTAAAAGGCAACCGAAAC 57.822 39.130 0.00 0.00 37.17 2.78
3991 9550 5.838531 TTCTCTTTAAAAGGCAACCGAAA 57.161 34.783 0.00 0.00 37.17 3.46
3993 9552 4.217550 CCATTCTCTTTAAAAGGCAACCGA 59.782 41.667 0.00 0.00 37.17 4.69
3994 9553 4.485163 CCATTCTCTTTAAAAGGCAACCG 58.515 43.478 0.00 0.00 37.17 4.44
3996 9555 4.283467 ACCCCATTCTCTTTAAAAGGCAAC 59.717 41.667 0.00 0.00 0.00 4.17
3997 9556 4.488770 ACCCCATTCTCTTTAAAAGGCAA 58.511 39.130 0.00 0.00 0.00 4.52
3998 9557 4.126520 ACCCCATTCTCTTTAAAAGGCA 57.873 40.909 0.00 0.00 0.00 4.75
3999 9558 5.394224 GCTAACCCCATTCTCTTTAAAAGGC 60.394 44.000 0.00 0.00 0.00 4.35
4001 9560 6.834168 TGCTAACCCCATTCTCTTTAAAAG 57.166 37.500 0.00 0.00 0.00 2.27
4003 9562 6.548321 TCTTGCTAACCCCATTCTCTTTAAA 58.452 36.000 0.00 0.00 0.00 1.52
4004 9563 6.012858 TCTCTTGCTAACCCCATTCTCTTTAA 60.013 38.462 0.00 0.00 0.00 1.52
4005 9564 5.487488 TCTCTTGCTAACCCCATTCTCTTTA 59.513 40.000 0.00 0.00 0.00 1.85
4006 9565 4.289672 TCTCTTGCTAACCCCATTCTCTTT 59.710 41.667 0.00 0.00 0.00 2.52
4007 9566 3.846588 TCTCTTGCTAACCCCATTCTCTT 59.153 43.478 0.00 0.00 0.00 2.85
4008 9567 3.454858 TCTCTTGCTAACCCCATTCTCT 58.545 45.455 0.00 0.00 0.00 3.10
4009 9568 3.914426 TCTCTTGCTAACCCCATTCTC 57.086 47.619 0.00 0.00 0.00 2.87
4010 9569 4.657814 TTTCTCTTGCTAACCCCATTCT 57.342 40.909 0.00 0.00 0.00 2.40
4011 9570 4.949856 TGATTTCTCTTGCTAACCCCATTC 59.050 41.667 0.00 0.00 0.00 2.67
4012 9571 4.934356 TGATTTCTCTTGCTAACCCCATT 58.066 39.130 0.00 0.00 0.00 3.16
4013 9572 4.591321 TGATTTCTCTTGCTAACCCCAT 57.409 40.909 0.00 0.00 0.00 4.00
4016 9575 6.129053 CAAGATGATTTCTCTTGCTAACCC 57.871 41.667 0.58 0.00 42.11 4.11
4034 9593 9.868277 GCATAAGCTACTCATAATCTACAAGAT 57.132 33.333 0.00 0.00 35.43 2.40
4036 9595 9.650539 ATGCATAAGCTACTCATAATCTACAAG 57.349 33.333 0.00 0.00 42.74 3.16
4037 9596 9.428097 CATGCATAAGCTACTCATAATCTACAA 57.572 33.333 0.00 0.00 42.74 2.41
4039 9598 9.299963 CTCATGCATAAGCTACTCATAATCTAC 57.700 37.037 0.00 0.00 42.74 2.59
4040 9599 9.029368 ACTCATGCATAAGCTACTCATAATCTA 57.971 33.333 0.00 0.00 42.74 1.98
4041 9600 7.905265 ACTCATGCATAAGCTACTCATAATCT 58.095 34.615 0.00 0.00 42.74 2.40
4042 9601 7.277539 GGACTCATGCATAAGCTACTCATAATC 59.722 40.741 0.00 0.00 42.74 1.75
4043 9602 7.038445 AGGACTCATGCATAAGCTACTCATAAT 60.038 37.037 0.00 0.00 42.74 1.28
4044 9603 6.268617 AGGACTCATGCATAAGCTACTCATAA 59.731 38.462 0.00 0.00 42.74 1.90
4045 9604 5.777223 AGGACTCATGCATAAGCTACTCATA 59.223 40.000 0.00 0.00 42.74 2.15
4046 9605 4.592351 AGGACTCATGCATAAGCTACTCAT 59.408 41.667 0.00 0.00 42.74 2.90
4047 9606 3.963374 AGGACTCATGCATAAGCTACTCA 59.037 43.478 0.00 0.00 42.74 3.41
4048 9607 4.038522 TCAGGACTCATGCATAAGCTACTC 59.961 45.833 0.00 0.00 42.74 2.59
4049 9608 3.963374 TCAGGACTCATGCATAAGCTACT 59.037 43.478 0.00 0.00 42.74 2.57
4050 9609 4.327982 TCAGGACTCATGCATAAGCTAC 57.672 45.455 0.00 0.00 42.74 3.58
4051 9610 4.262765 CCATCAGGACTCATGCATAAGCTA 60.263 45.833 0.00 0.00 38.40 3.32
4053 9612 2.812591 CCATCAGGACTCATGCATAAGC 59.187 50.000 0.00 0.00 38.15 3.09
4054 9613 4.347360 TCCATCAGGACTCATGCATAAG 57.653 45.455 0.00 0.00 39.61 1.73
4055 9614 4.776435 TTCCATCAGGACTCATGCATAA 57.224 40.909 0.00 0.00 45.73 1.90
4057 9616 3.137728 TGATTCCATCAGGACTCATGCAT 59.862 43.478 0.00 0.00 45.50 3.96
4058 9617 2.506644 TGATTCCATCAGGACTCATGCA 59.493 45.455 1.00 0.00 45.50 3.96
4063 9622 7.439655 GTGTTTATAGTGATTCCATCAGGACTC 59.560 40.741 0.00 0.00 45.73 3.36
4064 9623 7.275920 GTGTTTATAGTGATTCCATCAGGACT 58.724 38.462 0.00 0.00 45.73 3.85
4065 9624 6.483640 GGTGTTTATAGTGATTCCATCAGGAC 59.516 42.308 0.00 0.00 45.73 3.85
4069 9628 6.069673 ACCTGGTGTTTATAGTGATTCCATCA 60.070 38.462 0.00 0.00 36.84 3.07
4070 9629 6.357367 ACCTGGTGTTTATAGTGATTCCATC 58.643 40.000 0.00 0.00 0.00 3.51
4071 9630 6.069673 TGACCTGGTGTTTATAGTGATTCCAT 60.070 38.462 2.82 0.00 0.00 3.41
4072 9631 5.249622 TGACCTGGTGTTTATAGTGATTCCA 59.750 40.000 2.82 0.00 0.00 3.53
4073 9632 5.741011 TGACCTGGTGTTTATAGTGATTCC 58.259 41.667 2.82 0.00 0.00 3.01
4074 9633 7.865706 ATTGACCTGGTGTTTATAGTGATTC 57.134 36.000 2.82 0.00 0.00 2.52
4086 9737 9.621629 TCGAAAATAATTATATTGACCTGGTGT 57.378 29.630 2.82 0.00 32.06 4.16
4105 9756 8.692710 TGACCATCATAACTACTACTCGAAAAT 58.307 33.333 0.00 0.00 0.00 1.82
4107 9758 7.634671 TGACCATCATAACTACTACTCGAAA 57.365 36.000 0.00 0.00 0.00 3.46
4108 9759 7.555195 TCTTGACCATCATAACTACTACTCGAA 59.445 37.037 0.00 0.00 0.00 3.71
4110 9761 7.260558 TCTTGACCATCATAACTACTACTCG 57.739 40.000 0.00 0.00 0.00 4.18
4113 9764 9.413048 GCTTATCTTGACCATCATAACTACTAC 57.587 37.037 0.00 0.00 0.00 2.73
4114 9765 9.143155 TGCTTATCTTGACCATCATAACTACTA 57.857 33.333 0.00 0.00 0.00 1.82
4116 11888 8.839310 ATGCTTATCTTGACCATCATAACTAC 57.161 34.615 0.00 0.00 0.00 2.73
4122 11894 7.520798 TCCTTTATGCTTATCTTGACCATCAT 58.479 34.615 0.00 0.00 0.00 2.45
4159 11931 8.375506 GTGAATCAATCCAAGGTATACCAGATA 58.624 37.037 23.87 9.03 38.89 1.98
4160 11932 7.227156 GTGAATCAATCCAAGGTATACCAGAT 58.773 38.462 23.87 17.96 38.89 2.90
4163 11935 5.431731 AGGTGAATCAATCCAAGGTATACCA 59.568 40.000 23.87 3.25 38.89 3.25
4164 11936 5.941788 AGGTGAATCAATCCAAGGTATACC 58.058 41.667 14.54 14.54 0.00 2.73
4167 11939 6.069440 TCTCAAGGTGAATCAATCCAAGGTAT 60.069 38.462 0.00 0.00 0.00 2.73
4170 11942 4.592942 TCTCAAGGTGAATCAATCCAAGG 58.407 43.478 0.00 0.00 0.00 3.61
4175 11947 9.649167 AATGAATTTTCTCAAGGTGAATCAATC 57.351 29.630 0.00 0.00 0.00 2.67
4180 11952 8.645110 ACTTGAATGAATTTTCTCAAGGTGAAT 58.355 29.630 19.86 4.92 38.91 2.57
4192 11964 7.874528 GGGATGTCTTTGACTTGAATGAATTTT 59.125 33.333 0.00 0.00 33.15 1.82
4196 11968 5.384336 TGGGATGTCTTTGACTTGAATGAA 58.616 37.500 0.00 0.00 33.15 2.57
4202 11974 5.846203 ACAAAATGGGATGTCTTTGACTTG 58.154 37.500 0.73 0.00 33.84 3.16
4203 11975 6.549364 TGTACAAAATGGGATGTCTTTGACTT 59.451 34.615 0.00 0.00 33.84 3.01
4204 11976 6.016276 GTGTACAAAATGGGATGTCTTTGACT 60.016 38.462 0.00 0.00 33.84 3.41
4207 11979 6.331369 AGTGTACAAAATGGGATGTCTTTG 57.669 37.500 0.00 0.00 35.39 2.77
4209 11981 6.976934 AAAGTGTACAAAATGGGATGTCTT 57.023 33.333 0.00 0.00 0.00 3.01
4210 11982 6.976934 AAAAGTGTACAAAATGGGATGTCT 57.023 33.333 0.00 0.00 0.00 3.41
4212 11984 7.360113 AGAAAAAGTGTACAAAATGGGATGT 57.640 32.000 0.00 0.00 0.00 3.06
4213 11985 8.661352 AAAGAAAAAGTGTACAAAATGGGATG 57.339 30.769 0.00 0.00 0.00 3.51
4215 11987 8.314751 TCAAAAGAAAAAGTGTACAAAATGGGA 58.685 29.630 0.00 0.00 0.00 4.37
4216 11988 8.485976 TCAAAAGAAAAAGTGTACAAAATGGG 57.514 30.769 0.00 0.00 0.00 4.00
4232 12004 6.069673 TGCCTCCCTACATCTATCAAAAGAAA 60.070 38.462 0.00 0.00 0.00 2.52
4233 12005 5.428457 TGCCTCCCTACATCTATCAAAAGAA 59.572 40.000 0.00 0.00 0.00 2.52
4238 12010 4.199002 TCTGCCTCCCTACATCTATCAA 57.801 45.455 0.00 0.00 0.00 2.57
4245 12017 3.589288 AGAACTTTTCTGCCTCCCTACAT 59.411 43.478 0.00 0.00 38.91 2.29
4247 12019 3.601435 GAGAACTTTTCTGCCTCCCTAC 58.399 50.000 0.00 0.00 40.87 3.18
4262 12036 6.030548 TCTGAAGATGATGAAACGAGAACT 57.969 37.500 0.00 0.00 0.00 3.01
4263 12037 6.900568 ATCTGAAGATGATGAAACGAGAAC 57.099 37.500 0.00 0.00 32.68 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.